0s autopkgtest [16:44:08]: starting date and time: 2026-02-09 16:44:08+0000 0s autopkgtest [16:44:08]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [16:44:08]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8_u8gmde/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade transtermhp --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.42-2ubuntu5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-s390x-23.secgroup --name adt-resolute-s390x-transtermhp-20260209-141840-juju-7f2275-prod-proposed-migration-environment-20-63d52b3a-0d09-4aa1-95d7-1c9a17217379 --image adt/ubuntu-resolute-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-s390x -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 6s Creating nova instance adt-resolute-s390x-transtermhp-20260209-141840-juju-7f2275-prod-proposed-migration-environment-20-63d52b3a-0d09-4aa1-95d7-1c9a17217379 from image adt/ubuntu-resolute-s390x-server-20260209.img (UUID 9cc437fa-9eb6-47c5-b3be-2034f91c6244)... 130s autopkgtest [16:46:18]: testbed dpkg architecture: s390x 130s autopkgtest [16:46:18]: testbed apt version: 3.1.15 131s autopkgtest [16:46:19]: @@@@@@@@@@@@@@@@@@@@ test bed setup 131s autopkgtest [16:46:19]: testbed release detected to be: None 133s autopkgtest [16:46:21]: updating testbed package index (apt update) 134s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 134s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 134s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 134s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 134s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1618 kB] 134s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [1764 B] 134s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [173 kB] 134s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 134s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x Packages [244 kB] 134s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe s390x Packages [1438 kB] 135s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse s390x Packages [8136 B] 137s Fetched 3637 kB in 4s (995 kB/s) 143s Reading package lists... 145s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 145s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 145s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 145s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 151s Reading package lists... 152s Reading package lists... 153s Building dependency tree... 153s Reading state information... 154s Calculating upgrade... 155s The following packages will be upgraded: 155s cryptsetup-bin dracut-install libc-bin libc-gconv-modules-extra libc6 155s libcryptsetup12 locales 155s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 155s Need to get 8469 kB of archives. 155s After this operation, 0 B of additional disk space will be used. 155s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x libc-gconv-modules-extra s390x 2.42-2ubuntu5 [1369 kB] 156s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x libc6 s390x 2.42-2ubuntu5 [1623 kB] 156s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x libc-bin s390x 2.42-2ubuntu5 [674 kB] 156s Get:4 http://ftpmaster.internal/ubuntu resolute/main s390x libcryptsetup12 s390x 2:2.8.0-1ubuntu3 [273 kB] 156s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x locales all 2.42-2ubuntu5 [4255 kB] 157s Get:6 http://ftpmaster.internal/ubuntu resolute/main s390x cryptsetup-bin s390x 2:2.8.0-1ubuntu3 [227 kB] 157s Get:7 http://ftpmaster.internal/ubuntu resolute/main s390x dracut-install s390x 109-11ubuntu1 [46.9 kB] 162s dpkg-preconfigure: unable to re-open stdin: No such file or directory 162s Fetched 8469 kB in 2s (4746 kB/s) 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88641 files and directories currently installed.) 173s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_s390x.deb ... 173s Unpacking libc-gconv-modules-extra:s390x (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 175s Setting up libc-gconv-modules-extra:s390x (2.42-2ubuntu5) ... 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88641 files and directories currently installed.) 176s Preparing to unpack .../libc6_2.42-2ubuntu5_s390x.deb ... 178s Unpacking libc6:s390x (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 179s Setting up libc6:s390x (2.42-2ubuntu5) ... 183s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88641 files and directories currently installed.) 183s Preparing to unpack .../libc-bin_2.42-2ubuntu5_s390x.deb ... 184s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 188s Setting up libc-bin (2.42-2ubuntu5) ... 195s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88641 files and directories currently installed.) 195s Preparing to unpack .../libcryptsetup12_2%3a2.8.0-1ubuntu3_s390x.deb ... 196s Unpacking libcryptsetup12:s390x (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 196s Preparing to unpack .../locales_2.42-2ubuntu5_all.deb ... 199s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 203s Preparing to unpack .../cryptsetup-bin_2%3a2.8.0-1ubuntu3_s390x.deb ... 203s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 204s Preparing to unpack .../dracut-install_109-11ubuntu1_s390x.deb ... 204s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 205s Setting up locales (2.42-2ubuntu5) ... 208s Generating locales (this might take a while)... 216s en_US.UTF-8... done 217s Generation complete. 217s Setting up dracut-install (109-11ubuntu1) ... 218s Setting up libcryptsetup12:s390x (2:2.8.0-1ubuntu3) ... 219s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 219s Processing triggers for systemd (259-1ubuntu3) ... 225s Processing triggers for man-db (2.13.1-1build1) ... 255s Processing triggers for libc-bin (2.42-2ubuntu5) ... 259s autopkgtest [16:48:27]: upgrading testbed (apt dist-upgrade and autopurge) 259s Reading package lists... 261s Building dependency tree... 261s Reading state information... 262s Calculating upgrade... 263s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 264s Reading package lists... 265s Building dependency tree... 265s Reading state information... 266s Solving dependencies... 267s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 277s autopkgtest [16:48:45]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP Fri Jan 23 19:02:49 UTC 2026 277s autopkgtest [16:48:45]: @@@@@@@@@@@@@@@@@@@@ apt-source transtermhp 285s Get:1 http://ftpmaster.internal/ubuntu resolute/universe transtermhp 2.09-5build1 (dsc) [2094 B] 285s Get:2 http://ftpmaster.internal/ubuntu resolute/universe transtermhp 2.09-5build1 (tar) [71.3 kB] 285s Get:3 http://ftpmaster.internal/ubuntu resolute/universe transtermhp 2.09-5build1 (diff) [16.0 kB] 287s gpgv: Signature made Tue Dec 2 22:01:13 2025 UTC 287s gpgv: using RSA key 92FE4F8B40CADC4ECCD60C1F5961FDBE9C619809 287s gpgv: Can't check signature: No public key 287s dpkg-source: warning: cannot verify inline signature for ./transtermhp_2.09-5build1.dsc: no acceptable signature found 288s autopkgtest [16:48:56]: testing package transtermhp version 2.09-5build1 288s autopkgtest [16:48:56]: build not needed 289s autopkgtest [16:48:57]: test run-unit-test: preparing testbed 290s Reading package lists... 292s Building dependency tree... 293s Reading state information... 293s Solving dependencies... 295s The following NEW packages will be installed: 295s transtermhp 295s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 295s Need to get 122 kB of archives. 295s After this operation, 374 kB of additional disk space will be used. 295s Get:1 http://ftpmaster.internal/ubuntu resolute/universe s390x transtermhp s390x 2.09-5build1 [122 kB] 298s Fetched 122 kB in 0s (264 kB/s) 298s Selecting previously unselected package transtermhp. 298s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88641 files and directories currently installed.) 298s Preparing to unpack .../transtermhp_2.09-5build1_s390x.deb ... 298s Unpacking transtermhp (2.09-5build1) ... 299s Setting up transtermhp (2.09-5build1) ... 299s Processing triggers for man-db (2.13.1-1build1) ... 308s autopkgtest [16:49:16]: test run-unit-test: [----------------------- 309s calibrate.sh 309s expterm.dat 309s infile.fasta 309s make_expterm.py 309s mfold_rna.sh 309s random_fasta.py 309s Test 1 309s TransTerm Options = 309s NOTE: warnings about 'using version 1.0 confidence' are expected and OK. 309s TransTermHP v2.08 (built on Dec 2 2025) 309s WARNING: USING VERSION 1.0 CONFIDENCE. 309s (use -p expterm.dat to use v2.0 confidence) 309s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 309s 309s --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 309s --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 309s --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 309s --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 309s --start-cut=0 --end-cut=25 309s 309s 309s warning: no examples in genes; can't compute conf. 309s 309s Each terminator entry starts in column 3 and is of the form: 309s term # start - end +/- regionconf hp tail | notes 309s Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. 309s Genes are interspersed, and start the first column. 309s 309s 309s Wall clock time = 0 seconds. 309s calibrate.sh: Running TransTerm on random sequence with %AT = 0.26 424s WARNING: USING VERSION 1.0 CONFIDENCE. 424s (use -p expterm.dat to use v2.0 confidence) 424s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 545s Seq: random (length 20000000, 14782 genes) 545s 551s Wall clock time = 126 seconds. 551s calibrate.sh: Running TransTerm on random sequence with %AT = 0.28 640s WARNING: USING VERSION 1.0 CONFIDENCE. 640s (use -p expterm.dat to use v2.0 confidence) 640s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 763s Seq: random (length 20000000, 14830 genes) 763s 769s Wall clock time = 129 seconds. 769s calibrate.sh: Running TransTerm on random sequence with %AT = 0.30 863s WARNING: USING VERSION 1.0 CONFIDENCE. 863s (use -p expterm.dat to use v2.0 confidence) 863s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1020s Seq: random (length 20000000, 14765 genes) 1020s 1027s Wall clock time = 164 seconds. 1027s calibrate.sh: Running TransTerm on random sequence with %AT = 0.32 1143s WARNING: USING VERSION 1.0 CONFIDENCE. 1143s (use -p expterm.dat to use v2.0 confidence) 1143s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1316s Seq: random (length 20000000, 14780 genes) 1316s 1325s Wall clock time = 182 seconds. 1325s calibrate.sh: Running TransTerm on random sequence with %AT = 0.34 1435s WARNING: USING VERSION 1.0 CONFIDENCE. 1435s (use -p expterm.dat to use v2.0 confidence) 1435s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1626s Seq: random (length 20000000, 14778 genes) 1626s 1634s Wall clock time = 198 seconds. 1634s calibrate.sh: Running TransTerm on random sequence with %AT = 0.36 1747s WARNING: USING VERSION 1.0 CONFIDENCE. 1747s (use -p expterm.dat to use v2.0 confidence) 1747s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1956s Seq: random (length 20000000, 14766 genes) 1956s 1964s Wall clock time = 217 seconds. 1965s calibrate.sh: Running TransTerm on random sequence with %AT = 0.38 2070s WARNING: USING VERSION 1.0 CONFIDENCE. 2070s (use -p expterm.dat to use v2.0 confidence) 2070s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 2300s Seq: random (length 20000000, 14768 genes) 2300s 2307s Wall clock time = 236 seconds. 2307s calibrate.sh: Running TransTerm on random sequence with %AT = 0.40 2404s WARNING: USING VERSION 1.0 CONFIDENCE. 2404s (use -p expterm.dat to use v2.0 confidence) 2404s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 2636s Seq: random (length 20000000, 14794 genes) 2636s 2643s Wall clock time = 238 seconds. 2643s calibrate.sh: Running TransTerm on random sequence with %AT = 0.42 2759s WARNING: USING VERSION 1.0 CONFIDENCE. 2759s (use -p expterm.dat to use v2.0 confidence) 2759s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 3006s Seq: random (length 20000000, 14783 genes) 3006s 3012s Wall clock time = 253 seconds. 3012s calibrate.sh: Running TransTerm on random sequence with %AT = 0.44 3111s WARNING: USING VERSION 1.0 CONFIDENCE. 3111s (use -p expterm.dat to use v2.0 confidence) 3111s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 3360s Seq: random (length 20000000, 14793 genes) 3360s 3367s Wall clock time = 257 seconds. 3367s calibrate.sh: Running TransTerm on random sequence with %AT = 0.46 3476s WARNING: USING VERSION 1.0 CONFIDENCE. 3476s (use -p expterm.dat to use v2.0 confidence) 3476s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 4682s Seq: random (length 20000000, 14820 genes) autopkgtest-virt-ssh [18:02:10]: ------- nova console-log 81595e46-8cbe-4ce2-a6f7-778f9174f0f0 (adt-resolute-s390x-transtermhp-20260209-141840-juju-7f2275-prod-proposed-migration-environment-20-63d52b3a-0d09-4aa1-95d7-1c9a17217379) ------ 4682s ERROR (CommandError): No server with a name or ID of '81595e46-8cbe-4ce2-a6f7-778f9174f0f0' exists. 4682s --------------------------------------------------- 4682s ------- nova show 81595e46-8cbe-4ce2-a6f7-778f9174f0f0 (adt-resolute-s390x-transtermhp-20260209-141840-juju-7f2275-prod-proposed-migration-environment-20-63d52b3a-0d09-4aa1-95d7-1c9a17217379) ------ 4682s ERROR (CommandError): No server with a name or ID of '81595e46-8cbe-4ce2-a6f7-778f9174f0f0' exists. 4682s --------------------------------------------------- 4682s 5225s autopkgtest [18:11:13]: ERROR: testbed failure: testbed auxverb failed with exit code 255