0s autopkgtest [02:27:41]: starting date and time: 2025-12-02 02:27:41+0000 0s autopkgtest [02:27:41]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [02:27:41]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._x_1__k3/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:mathjax --apt-upgrade snakemake --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=mathjax/2.7.9+dfsg-1build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-9.secgroup --name adt-resolute-s390x-snakemake-20251202-022741-juju-7f2275-prod-proposed-migration-environment-15-74153078-6823-454d-bb59-02f5c08d036e --image adt/ubuntu-resolute-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-s390x-snakemake-20251202-022741-juju-7f2275-prod-proposed-migration-environment-15-74153078-6823-454d-bb59-02f5c08d036e from image adt/ubuntu-resolute-s390x-server-20251201.img (UUID 8b543b6a-e578-44a2-9fed-51cc5e2754ca)... 46s autopkgtest [02:28:27]: testbed dpkg architecture: s390x 46s autopkgtest [02:28:27]: testbed apt version: 3.1.12 46s autopkgtest [02:28:27]: @@@@@@@@@@@@@@@@@@@@ test bed setup 46s autopkgtest [02:28:27]: testbed release detected to be: None 47s autopkgtest [02:28:28]: updating testbed package index (apt update) 47s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 47s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 47s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 47s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 48s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [20.5 kB] 48s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [159 kB] 48s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [824 kB] 48s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x Packages [88.2 kB] 48s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe s390x Packages [467 kB] 48s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse s390x Packages [5564 B] 48s Fetched 1689 kB in 1s (1609 kB/s) 49s Reading package lists... 49s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 49s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 49s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 49s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 50s Reading package lists... 50s Reading package lists... 50s Building dependency tree... 50s Reading state information... 50s Calculating upgrade...autopkgtest [02:28:31]: upgrading testbed (apt dist-upgrade and autopurge) 50s 50s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 51s Reading package lists... 51s Building dependency tree... 51s Reading state information... 51s Calculating upgrade... 51s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 51s Reading package lists... 51s Building dependency tree... 51s Reading state information... 51s Solving dependencies... 51s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 54s autopkgtest [02:28:35]: testbed running kernel: Linux 6.17.0-6-generic #6-Ubuntu SMP Tue Oct 7 12:36:22 UTC 2025 54s autopkgtest [02:28:35]: @@@@@@@@@@@@@@@@@@@@ apt-source snakemake 56s Get:1 http://ftpmaster.internal/ubuntu resolute/universe snakemake 7.32.4-7 (dsc) [3526 B] 56s Get:2 http://ftpmaster.internal/ubuntu resolute/universe snakemake 7.32.4-7 (tar) [8886 kB] 56s Get:3 http://ftpmaster.internal/ubuntu resolute/universe snakemake 7.32.4-7 (diff) [29.8 kB] 56s gpgv: Signature made Sun Feb 9 22:32:14 2025 UTC 56s gpgv: using RSA key 67CB311005C4EDBE32175308DEE50D0D567EA266 56s gpgv: issuer "rebecca_palmer@zoho.com" 56s gpgv: Can't check signature: No public key 56s dpkg-source: warning: cannot verify inline signature for ./snakemake_7.32.4-7.dsc: no acceptable signature found 57s autopkgtest [02:28:38]: testing package snakemake version 7.32.4-7 57s run-unit-test SKIP Test declares architecture as not supported: s390x 57s autopkgtest [02:28:38]: build not needed 59s run-unit-test SKIP Test declares architecture as not supported: s390x 59s autopkgtest [02:28:40]: test command1: preparing testbed 60s Reading package lists... 60s Building dependency tree... 60s Reading state information... 60s Solving dependencies... 60s The following NEW packages will be installed: 60s coinor-cbc coinor-libcbc3.1 coinor-libcgl1 coinor-libclp1 60s coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common 60s fonts-glyphicons-halflings git git-man libblas3 libdatrie1 liberror-perl 60s libgfortran5 libjs-bootstrap libjs-jquery liblapack3 python3-configargparse 60s python3-connection-pool python3-datrie python3-decorator python3-docutils 60s python3-dpath python3-fastjsonschema python3-git python3-gitdb 60s python3-humanfriendly python3-jupyter-core python3-nbformat python3-plac 60s python3-platformdirs python3-psutil python3-pulp python3-ratelimiter 60s python3-retry python3-roman python3-smart-open python3-smmap python3-stopit 60s python3-tabulate python3-throttler python3-toposort python3-traitlets 60s python3-wrapt python3-yte sgml-base snakemake xml-core 60s 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded. 60s Need to get 15.4 MB of archives. 60s After this operation, 60.7 MB of additional disk space will be used. 60s Get:1 http://ftpmaster.internal/ubuntu resolute/main s390x libblas3 s390x 3.12.1-7 [254 kB] 61s Get:2 http://ftpmaster.internal/ubuntu resolute/main s390x libgfortran5 s390x 15.2.0-9ubuntu1 [629 kB] 61s Get:3 http://ftpmaster.internal/ubuntu resolute/main s390x liblapack3 s390x 3.12.1-7 [2983 kB] 62s Get:4 http://ftpmaster.internal/ubuntu resolute/universe s390x coinor-libcoinutils3v5 s390x 2.11.12+ds-1 [548 kB] 62s Get:5 http://ftpmaster.internal/ubuntu resolute/universe s390x coinor-libosi1v5 s390x 0.108.11+ds-1 [304 kB] 62s Get:6 http://ftpmaster.internal/ubuntu resolute/universe s390x coinor-libclp1 s390x 1.17.10+ds-1 [1064 kB] 62s Get:7 http://ftpmaster.internal/ubuntu resolute/universe s390x coinor-libcgl1 s390x 0.60.9+ds-1 [469 kB] 62s Get:8 http://ftpmaster.internal/ubuntu resolute/universe s390x coinor-libcbc3.1 s390x 2.10.12+ds-1 [828 kB] 62s Get:9 http://ftpmaster.internal/ubuntu resolute/main s390x sgml-base all 1.31+nmu1 [11.0 kB] 62s Get:10 http://ftpmaster.internal/ubuntu resolute/main s390x xml-core all 0.19 [20.3 kB] 62s Get:11 http://ftpmaster.internal/ubuntu resolute/main s390x docutils-common all 0.21.2+dfsg-2 [131 kB] 62s Get:12 http://ftpmaster.internal/ubuntu resolute/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 62s Get:13 http://ftpmaster.internal/ubuntu resolute/main s390x liberror-perl all 0.17030-1 [23.5 kB] 62s Get:14 http://ftpmaster.internal/ubuntu resolute/main s390x git-man all 1:2.51.0-1ubuntu1 [1179 kB] 62s Get:15 http://ftpmaster.internal/ubuntu resolute/main s390x git s390x 1:2.51.0-1ubuntu1 [4290 kB] 63s Get:16 http://ftpmaster.internal/ubuntu resolute/main s390x libdatrie1 s390x 0.2.14-1 [20.7 kB] 63s Get:17 http://ftpmaster.internal/ubuntu resolute/universe s390x libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 63s Get:18 http://ftpmaster.internal/ubuntu resolute/main s390x libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 63s Get:19 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-configargparse all 1.7-2 [31.7 kB] 63s Get:20 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-connection-pool all 0.0.3-2build1 [5792 B] 63s Get:21 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-datrie s390x 0.8.3-2 [221 kB] 63s Get:22 http://ftpmaster.internal/ubuntu resolute/main s390x python3-decorator all 5.2.1-2 [28.1 kB] 63s Get:23 http://ftpmaster.internal/ubuntu resolute/main s390x python3-roman all 5.1-1 [10.6 kB] 63s Get:24 http://ftpmaster.internal/ubuntu resolute/main s390x python3-docutils all 0.21.2+dfsg-2 [409 kB] 63s Get:25 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-dpath all 2.2.0-1 [20.1 kB] 63s Get:26 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-fastjsonschema all 2.21.1-1 [20.4 kB] 63s Get:27 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-smmap all 6.0.0-1 [20.5 kB] 63s Get:28 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-gitdb all 4.0.12-1 [46.4 kB] 63s Get:29 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-git all 3.1.45-1 [149 kB] 63s Get:30 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-humanfriendly all 10.0-6 [70.8 kB] 63s Get:31 http://ftpmaster.internal/ubuntu resolute/main s390x python3-platformdirs all 4.4.0-1 [16.9 kB] 63s Get:32 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 63s Get:33 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-jupyter-core all 5.7.2-5 [28.1 kB] 63s Get:34 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-nbformat all 5.9.1-1 [41.2 kB] 63s Get:35 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-plac all 1.4.3-2 [63.2 kB] 63s Get:36 http://ftpmaster.internal/ubuntu resolute/main s390x python3-psutil s390x 7.1.0-1ubuntu1 [191 kB] 63s Get:37 http://ftpmaster.internal/ubuntu resolute/universe s390x coinor-cbc s390x 2.10.12+ds-1 [14.5 kB] 63s Get:38 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pulp all 2.7.0+dfsg-4 [71.4 kB] 63s Get:39 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-ratelimiter s390x 1.2.0.post0-5 [5782 B] 63s Get:40 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-retry all 0.9.2-4 [6094 B] 63s Get:41 http://ftpmaster.internal/ubuntu resolute/main s390x python3-wrapt s390x 1.17.3-2 [41.0 kB] 63s Get:42 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-smart-open all 7.1.0-1 [89.9 kB] 63s Get:43 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-stopit all 1.1.2-3 [12.8 kB] 63s Get:44 http://ftpmaster.internal/ubuntu resolute/main s390x python3-tabulate all 0.9.0-1 [45.3 kB] 63s Get:45 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-throttler all 1.2.2-2 [7138 B] 63s Get:46 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-toposort all 1.10-2 [6348 B] 63s Get:47 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-yte all 1.5.4-1 [12.0 kB] 63s Get:48 http://ftpmaster.internal/ubuntu resolute/universe s390x snakemake all 7.32.4-7 [274 kB] 64s Fetched 15.4 MB in 3s (4544 kB/s) 64s Selecting previously unselected package libblas3:s390x. 64s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 87031 files and directories currently installed.) 64s Preparing to unpack .../00-libblas3_3.12.1-7_s390x.deb ... 64s Unpacking libblas3:s390x (3.12.1-7) ... 64s Selecting previously unselected package libgfortran5:s390x. 64s Preparing to unpack .../01-libgfortran5_15.2.0-9ubuntu1_s390x.deb ... 64s Unpacking libgfortran5:s390x (15.2.0-9ubuntu1) ... 64s Selecting previously unselected package liblapack3:s390x. 64s Preparing to unpack .../02-liblapack3_3.12.1-7_s390x.deb ... 64s Unpacking liblapack3:s390x (3.12.1-7) ... 64s Selecting previously unselected package coinor-libcoinutils3v5:s390x. 64s Preparing to unpack .../03-coinor-libcoinutils3v5_2.11.12+ds-1_s390x.deb ... 64s Unpacking coinor-libcoinutils3v5:s390x (2.11.12+ds-1) ... 64s Selecting previously unselected package coinor-libosi1v5:s390x. 64s Preparing to unpack .../04-coinor-libosi1v5_0.108.11+ds-1_s390x.deb ... 64s Unpacking coinor-libosi1v5:s390x (0.108.11+ds-1) ... 64s Selecting previously unselected package coinor-libclp1:s390x. 64s Preparing to unpack .../05-coinor-libclp1_1.17.10+ds-1_s390x.deb ... 64s Unpacking coinor-libclp1:s390x (1.17.10+ds-1) ... 64s Selecting previously unselected package coinor-libcgl1:s390x. 64s Preparing to unpack .../06-coinor-libcgl1_0.60.9+ds-1_s390x.deb ... 64s Unpacking coinor-libcgl1:s390x (0.60.9+ds-1) ... 64s Selecting previously unselected package coinor-libcbc3.1:s390x. 64s Preparing to unpack .../07-coinor-libcbc3.1_2.10.12+ds-1_s390x.deb ... 64s Unpacking coinor-libcbc3.1:s390x (2.10.12+ds-1) ... 64s Selecting previously unselected package sgml-base. 64s Preparing to unpack .../08-sgml-base_1.31+nmu1_all.deb ... 64s Unpacking sgml-base (1.31+nmu1) ... 64s Selecting previously unselected package xml-core. 64s Preparing to unpack .../09-xml-core_0.19_all.deb ... 64s Unpacking xml-core (0.19) ... 64s Selecting previously unselected package docutils-common. 64s Preparing to unpack .../10-docutils-common_0.21.2+dfsg-2_all.deb ... 64s Unpacking docutils-common (0.21.2+dfsg-2) ... 64s Selecting previously unselected package fonts-glyphicons-halflings. 64s Preparing to unpack .../11-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 64s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 64s Selecting previously unselected package liberror-perl. 64s Preparing to unpack .../12-liberror-perl_0.17030-1_all.deb ... 64s Unpacking liberror-perl (0.17030-1) ... 64s Selecting previously unselected package git-man. 64s Preparing to unpack .../13-git-man_1%3a2.51.0-1ubuntu1_all.deb ... 64s Unpacking git-man (1:2.51.0-1ubuntu1) ... 64s Selecting previously unselected package git. 64s Preparing to unpack .../14-git_1%3a2.51.0-1ubuntu1_s390x.deb ... 64s Unpacking git (1:2.51.0-1ubuntu1) ... 64s Selecting previously unselected package libdatrie1:s390x. 64s Preparing to unpack .../15-libdatrie1_0.2.14-1_s390x.deb ... 64s Unpacking libdatrie1:s390x (0.2.14-1) ... 64s Selecting previously unselected package libjs-bootstrap. 64s Preparing to unpack .../16-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 64s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 64s Selecting previously unselected package libjs-jquery. 64s Preparing to unpack .../17-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 64s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 64s Selecting previously unselected package python3-configargparse. 64s Preparing to unpack .../18-python3-configargparse_1.7-2_all.deb ... 64s Unpacking python3-configargparse (1.7-2) ... 64s Selecting previously unselected package python3-connection-pool. 64s Preparing to unpack .../19-python3-connection-pool_0.0.3-2build1_all.deb ... 64s Unpacking python3-connection-pool (0.0.3-2build1) ... 64s Selecting previously unselected package python3-datrie. 64s Preparing to unpack .../20-python3-datrie_0.8.3-2_s390x.deb ... 64s Unpacking python3-datrie (0.8.3-2) ... 64s Selecting previously unselected package python3-decorator. 64s Preparing to unpack .../21-python3-decorator_5.2.1-2_all.deb ... 64s Unpacking python3-decorator (5.2.1-2) ... 64s Selecting previously unselected package python3-roman. 64s Preparing to unpack .../22-python3-roman_5.1-1_all.deb ... 64s Unpacking python3-roman (5.1-1) ... 64s Selecting previously unselected package python3-docutils. 64s Preparing to unpack .../23-python3-docutils_0.21.2+dfsg-2_all.deb ... 64s Unpacking python3-docutils (0.21.2+dfsg-2) ... 64s Selecting previously unselected package python3-dpath. 64s Preparing to unpack .../24-python3-dpath_2.2.0-1_all.deb ... 64s Unpacking python3-dpath (2.2.0-1) ... 64s Selecting previously unselected package python3-fastjsonschema. 64s Preparing to unpack .../25-python3-fastjsonschema_2.21.1-1_all.deb ... 64s Unpacking python3-fastjsonschema (2.21.1-1) ... 64s Selecting previously unselected package python3-smmap. 64s Preparing to unpack .../26-python3-smmap_6.0.0-1_all.deb ... 64s Unpacking python3-smmap (6.0.0-1) ... 64s Selecting previously unselected package python3-gitdb. 64s Preparing to unpack .../27-python3-gitdb_4.0.12-1_all.deb ... 64s Unpacking python3-gitdb (4.0.12-1) ... 64s Selecting previously unselected package python3-git. 64s Preparing to unpack .../28-python3-git_3.1.45-1_all.deb ... 64s Unpacking python3-git (3.1.45-1) ... 64s Selecting previously unselected package python3-humanfriendly. 64s Preparing to unpack .../29-python3-humanfriendly_10.0-6_all.deb ... 64s Unpacking python3-humanfriendly (10.0-6) ... 64s Selecting previously unselected package python3-platformdirs. 64s Preparing to unpack .../30-python3-platformdirs_4.4.0-1_all.deb ... 64s Unpacking python3-platformdirs (4.4.0-1) ... 64s Selecting previously unselected package python3-traitlets. 64s Preparing to unpack .../31-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 64s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 64s Selecting previously unselected package python3-jupyter-core. 64s Preparing to unpack .../32-python3-jupyter-core_5.7.2-5_all.deb ... 64s Unpacking python3-jupyter-core (5.7.2-5) ... 64s Selecting previously unselected package python3-nbformat. 64s Preparing to unpack .../33-python3-nbformat_5.9.1-1_all.deb ... 64s Unpacking python3-nbformat (5.9.1-1) ... 64s Selecting previously unselected package python3-plac. 64s Preparing to unpack .../34-python3-plac_1.4.3-2_all.deb ... 64s Unpacking python3-plac (1.4.3-2) ... 64s Selecting previously unselected package python3-psutil. 64s Preparing to unpack .../35-python3-psutil_7.1.0-1ubuntu1_s390x.deb ... 64s Unpacking python3-psutil (7.1.0-1ubuntu1) ... 64s Selecting previously unselected package coinor-cbc. 64s Preparing to unpack .../36-coinor-cbc_2.10.12+ds-1_s390x.deb ... 64s Unpacking coinor-cbc (2.10.12+ds-1) ... 64s Selecting previously unselected package python3-pulp. 64s Preparing to unpack .../37-python3-pulp_2.7.0+dfsg-4_all.deb ... 64s Unpacking python3-pulp (2.7.0+dfsg-4) ... 64s Selecting previously unselected package python3-ratelimiter. 64s Preparing to unpack .../38-python3-ratelimiter_1.2.0.post0-5_s390x.deb ... 64s Unpacking python3-ratelimiter (1.2.0.post0-5) ... 64s Selecting previously unselected package python3-retry. 64s Preparing to unpack .../39-python3-retry_0.9.2-4_all.deb ... 64s Unpacking python3-retry (0.9.2-4) ... 64s Selecting previously unselected package python3-wrapt. 64s Preparing to unpack .../40-python3-wrapt_1.17.3-2_s390x.deb ... 64s Unpacking python3-wrapt (1.17.3-2) ... 64s Selecting previously unselected package python3-smart-open. 64s Preparing to unpack .../41-python3-smart-open_7.1.0-1_all.deb ... 64s Unpacking python3-smart-open (7.1.0-1) ... 64s Selecting previously unselected package python3-stopit. 64s Preparing to unpack .../42-python3-stopit_1.1.2-3_all.deb ... 64s Unpacking python3-stopit (1.1.2-3) ... 64s Selecting previously unselected package python3-tabulate. 64s Preparing to unpack .../43-python3-tabulate_0.9.0-1_all.deb ... 64s Unpacking python3-tabulate (0.9.0-1) ... 64s Selecting previously unselected package python3-throttler. 64s Preparing to unpack .../44-python3-throttler_1.2.2-2_all.deb ... 64s Unpacking python3-throttler (1.2.2-2) ... 64s Selecting previously unselected package python3-toposort. 64s Preparing to unpack .../45-python3-toposort_1.10-2_all.deb ... 64s Unpacking python3-toposort (1.10-2) ... 64s Selecting previously unselected package python3-yte. 65s Preparing to unpack .../46-python3-yte_1.5.4-1_all.deb ... 65s Unpacking python3-yte (1.5.4-1) ... 65s Selecting previously unselected package snakemake. 65s Preparing to unpack .../47-snakemake_7.32.4-7_all.deb ... 65s Unpacking snakemake (7.32.4-7) ... 65s Setting up python3-toposort (1.10-2) ... 65s Setting up python3-configargparse (1.7-2) ... 65s Setting up libdatrie1:s390x (0.2.14-1) ... 65s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 65s Setting up python3-tabulate (0.9.0-1) ... 65s Setting up python3-plac (1.4.3-2) ... 65s Setting up python3-platformdirs (4.4.0-1) ... 65s Setting up python3-psutil (7.1.0-1ubuntu1) ... 65s Setting up python3-ratelimiter (1.2.0.post0-5) ... 65s Setting up liberror-perl (0.17030-1) ... 65s Setting up python3-roman (5.1-1) ... 65s Setting up python3-decorator (5.2.1-2) ... 67s Setting up libblas3:s390x (3.12.1-7) ... 67s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 67s Setting up python3-humanfriendly (10.0-6) ... 67s Setting up python3-dpath (2.2.0-1) ... 67s Setting up python3-connection-pool (0.0.3-2build1) ... 67s Setting up python3-wrapt (1.17.3-2) ... 67s Setting up python3-throttler (1.2.2-2) ... 67s Setting up python3-retry (0.9.2-4) ... 67s Setting up libgfortran5:s390x (15.2.0-9ubuntu1) ... 67s Setting up python3-fastjsonschema (2.21.1-1) ... 67s Setting up python3-stopit (1.1.2-3) ... 67s Setting up python3-traitlets (5.14.3+really5.14.3-1) ... 67s Setting up git-man (1:2.51.0-1ubuntu1) ... 67s Setting up sgml-base (1.31+nmu1) ... 67s Setting up python3-datrie (0.8.3-2) ... 67s Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 67s Setting up python3-smmap (6.0.0-1) ... 67s Setting up python3-jupyter-core (5.7.2-5) ... 67s Setting up libjs-bootstrap (3.4.1+dfsg-6) ... 67s Setting up liblapack3:s390x (3.12.1-7) ... 67s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 67s Setting up python3-smart-open (7.1.0-1) ... 67s Setting up python3-nbformat (5.9.1-1) ... 67s Setting up python3-gitdb (4.0.12-1) ... 67s Setting up python3-yte (1.5.4-1) ... 67s Setting up coinor-libcoinutils3v5:s390x (2.11.12+ds-1) ... 67s Setting up git (1:2.51.0-1ubuntu1) ... 67s Setting up coinor-libosi1v5:s390x (0.108.11+ds-1) ... 67s Setting up xml-core (0.19) ... 67s Setting up coinor-libclp1:s390x (1.17.10+ds-1) ... 67s Setting up python3-git (3.1.45-1) ... 67s Setting up coinor-libcgl1:s390x (0.60.9+ds-1) ... 67s Setting up coinor-libcbc3.1:s390x (2.10.12+ds-1) ... 67s Setting up coinor-cbc (2.10.12+ds-1) ... 67s Setting up python3-pulp (2.7.0+dfsg-4) ... 67s /usr/lib/python3/dist-packages/pulp/apis/xpress_api.py:325: SyntaxWarning: invalid escape sequence '\ ' 67s otherwise be interpreted by the Tcl shell: \ $ " [ 67s Processing triggers for man-db (2.13.1-1) ... 68s Processing triggers for libc-bin (2.42-2ubuntu2) ... 68s Processing triggers for sgml-base (1.31+nmu1) ... 68s Setting up docutils-common (0.21.2+dfsg-2) ... 68s Processing triggers for sgml-base (1.31+nmu1) ... 68s Setting up python3-docutils (0.21.2+dfsg-2) ... 68s Setting up snakemake (7.32.4-7) ... 69s autopkgtest [02:28:50]: test command1: cp tests/test_bash/Snakefile $AUTOPKGTEST_TMP && cd $AUTOPKGTEST_TMP && snakemake --cores 1 && grep -e bash test.out 69s autopkgtest [02:28:50]: test command1: [----------------------- 70s Building DAG of jobs... 70s Using shell: /usr/bin/bash 70s Provided cores: 1 (use --cores to define parallelism) 70s Rules claiming more threads will be scaled down. 70s Job stats: 70s job count 70s ----- ------- 70s a 1 70s total 1 70s 70s Select jobs to execute... 70s 70s [Tue Dec 2 02:28:51 2025] 70s rule a: 70s output: test.out 70s jobid: 0 70s reason: Missing output files: test.out 70s resources: tmpdir=/tmp 70s 70s [Tue Dec 2 02:28:51 2025] 70s Finished job 0. 70s 1 of 1 steps (100%) done 70s Complete log: .snakemake/log/2025-12-02T022851.008723.snakemake.log 70s bash 70s autopkgtest [02:28:51]: test command1: -----------------------] 71s autopkgtest [02:28:52]: test command1: - - - - - - - - - - results - - - - - - - - - - 71s command1 PASS 71s autopkgtest [02:28:52]: @@@@@@@@@@@@@@@@@@@@ summary 71s run-unit-test SKIP Test declares architecture as not supported: s390x 71s run-unit-test SKIP Test declares architecture as not supported: s390x 71s command1 PASS