0s autopkgtest [09:54:34]: starting date and time: 2026-02-08 09:54:34+0000 0s autopkgtest [09:54:34]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [09:54:34]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.dikd9j45/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:setuptools --apt-upgrade python-pyani --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=setuptools/78.1.1-0.1build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-s390x-29.secgroup --name adt-resolute-s390x-python-pyani-20260208-073310-juju-7f2275-prod-proposed-migration-environment-20-09bc36b1-d541-43a2-a741-760b5125a908 --image adt/ubuntu-resolute-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-s390x -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-s390x-python-pyani-20260208-073310-juju-7f2275-prod-proposed-migration-environment-20-09bc36b1-d541-43a2-a741-760b5125a908 from image adt/ubuntu-resolute-s390x-server-20260208.img (UUID bf8d2066-816d-4293-b7d1-06f39d3d29cb)... 157s autopkgtest [09:57:11]: testbed dpkg architecture: s390x 158s autopkgtest [09:57:12]: testbed apt version: 3.1.15 159s autopkgtest [09:57:13]: @@@@@@@@@@@@@@@@@@@@ test bed setup 160s autopkgtest [09:57:14]: testbed release detected to be: None 163s autopkgtest [09:57:17]: updating testbed package index (apt update) 164s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 164s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 164s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 164s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 164s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1521 kB] 165s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [28.2 kB] 165s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [175 kB] 165s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x Packages [233 kB] 165s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe s390x Packages [1347 kB] 165s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse s390x Packages [7384 B] 168s Fetched 3436 kB in 4s (770 kB/s) 175s Reading package lists... 179s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 179s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 179s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 179s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 185s Reading package lists... 186s Reading package lists... 188s Building dependency tree... 188s Reading state information... 189s Calculating upgrade... 190s The following packages will be upgraded: 190s libxau6 libxkbcommon0 python3-pkg-resources python3-setuptools 190s ubuntu-kernel-accessories ubuntu-standard 190s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 190s Need to get 1005 kB of archives. 190s After this operation, 4096 B of additional disk space will be used. 190s Get:1 http://ftpmaster.internal/ubuntu resolute/main s390x libxau6 s390x 1:1.0.11-1build2 [7410 B] 190s Get:2 http://ftpmaster.internal/ubuntu resolute/main s390x libxkbcommon0 s390x 1.13.1-1 [165 kB] 190s Get:3 http://ftpmaster.internal/ubuntu resolute/main s390x ubuntu-standard s390x 1.564 [13.3 kB] 190s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x python3-pkg-resources all 78.1.1-0.1build1 [144 kB] 190s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x python3-setuptools all 78.1.1-0.1build1 [661 kB] 191s Get:6 http://ftpmaster.internal/ubuntu resolute/main s390x ubuntu-kernel-accessories s390x 1.564 [13.1 kB] 200s dpkg-preconfigure: unable to re-open stdin: No such file or directory 200s Fetched 1005 kB in 1s (1566 kB/s) 204s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88711 files and directories currently installed.) 204s Preparing to unpack .../0-libxau6_1%3a1.0.11-1build2_s390x.deb ... 207s Unpacking libxau6:s390x (1:1.0.11-1build2) over (1:1.0.11-1build1) ... 208s Preparing to unpack .../1-libxkbcommon0_1.13.1-1_s390x.deb ... 209s Unpacking libxkbcommon0:s390x (1.13.1-1) over (1.12.3-1) ... 211s Preparing to unpack .../2-ubuntu-standard_1.564_s390x.deb ... 211s Unpacking ubuntu-standard (1.564) over (1.563) ... 212s Preparing to unpack .../3-python3-pkg-resources_78.1.1-0.1build1_all.deb ... 214s Unpacking python3-pkg-resources (78.1.1-0.1build1) over (78.1.1-0.1) ... 216s Preparing to unpack .../4-python3-setuptools_78.1.1-0.1build1_all.deb ... 218s Unpacking python3-setuptools (78.1.1-0.1build1) over (78.1.1-0.1) ... 225s Preparing to unpack .../5-ubuntu-kernel-accessories_1.564_s390x.deb ... 225s Unpacking ubuntu-kernel-accessories (1.564) over (1.563) ... 227s Setting up python3-pkg-resources (78.1.1-0.1build1) ... 229s Setting up libxau6:s390x (1:1.0.11-1build2) ... 230s Setting up ubuntu-kernel-accessories (1.564) ... 233s Setting up python3-setuptools (78.1.1-0.1build1) ... 240s Setting up ubuntu-standard (1.564) ... 240s Setting up libxkbcommon0:s390x (1.13.1-1) ... 241s Processing triggers for libc-bin (2.42-2ubuntu4) ... 247s autopkgtest [09:58:41]: upgrading testbed (apt dist-upgrade and autopurge) 248s Reading package lists... 249s Building dependency tree... 249s Reading state information... 250s Calculating upgrade... 250s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 252s Reading package lists... 254s Building dependency tree... 254s Reading state information... 254s Solving dependencies... 256s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 264s autopkgtest [09:58:58]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP Fri Jan 23 19:02:49 UTC 2026 264s autopkgtest [09:58:58]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pyani 272s Get:1 http://ftpmaster.internal/ubuntu resolute/universe python-pyani 0.2.13-1 (dsc) [1798 B] 272s Get:2 http://ftpmaster.internal/ubuntu resolute/universe python-pyani 0.2.13-1 (tar) [49.0 MB] 272s Get:3 http://ftpmaster.internal/ubuntu resolute/universe python-pyani 0.2.13-1 (diff) [11.2 kB] 275s gpgv: Signature made Tue Mar 18 07:26:50 2025 UTC 275s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 275s gpgv: issuer "nilesh@debian.org" 275s gpgv: Can't check signature: No public key 275s dpkg-source: warning: cannot verify inline signature for ./python-pyani_0.2.13-1.dsc: no acceptable signature found 283s autopkgtest [09:59:17]: testing package python-pyani version 0.2.13-1 284s autopkgtest [09:59:18]: build not needed 308s autopkgtest [09:59:42]: test run-unit-test: preparing testbed 308s Reading package lists... 310s Building dependency tree... 310s Reading state information... 311s Solving dependencies... 313s The following NEW packages will be installed: 313s fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 313s fonts-lyx fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 313s libfontenc1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 313s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 313s libmbedcrypto16 libmbedtls21 libmbedx509-7 libopenjp2-7 libpixman-1-0 313s libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 313s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 313s libxslt1.1 libxss1 libzopfli1 mummer ncbi-blast+ ncbi-data 313s python-matplotlib-data python3-all python3-biopython python3-brotli 313s python3-cairo python3-charset-normalizer python3-contourpy python3-cycler 313s python3-decorator python3-fonttools python3-freetype python3-iniconfig 313s python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 313s python3-mpmath python3-numpy python3-numpy-dev python3-pandas 313s python3-pandas-lib python3-pil python3-pil.imagetk python3-pluggy 313s python3-pyani python3-pytest python3-pytz python3-reportlab 313s python3-rlpycairo python3-scipy python3-seaborn python3-sympy python3-tk 313s python3-ufolib2 python3-zopfli python3.13-tk python3.14 python3.14-minimal 313s python3.14-tk sgml-base unicode-data w3c-sgml-lib x11-common 313s xfonts-encodings xfonts-utils xml-core 313s 0 upgraded, 92 newly installed, 0 to remove and 0 not upgraded. 313s Need to get 129 MB of archives. 313s After this operation, 548 MB of additional disk space will be used. 313s Get:1 http://ftpmaster.internal/ubuntu resolute/main s390x python3-numpy-dev s390x 1:2.3.5+ds-3 [146 kB] 313s Get:2 http://ftpmaster.internal/ubuntu resolute/main s390x libblas3 s390x 3.12.1-7ubuntu1 [255 kB] 313s Get:3 http://ftpmaster.internal/ubuntu resolute/main s390x libgfortran5 s390x 15.2.0-12ubuntu1 [629 kB] 314s Get:4 http://ftpmaster.internal/ubuntu resolute/main s390x liblapack3 s390x 3.12.1-7ubuntu1 [2983 kB] 314s Get:5 http://ftpmaster.internal/ubuntu resolute/main s390x python3-numpy s390x 1:2.3.5+ds-3 [5305 kB] 314s Get:6 http://ftpmaster.internal/ubuntu resolute/main s390x python3.14-minimal s390x 3.14.2-1 [2510 kB] 314s Get:7 http://ftpmaster.internal/ubuntu resolute/main s390x fonts-dejavu-mono all 2.37-8build1 [502 kB] 314s Get:8 http://ftpmaster.internal/ubuntu resolute/main s390x fonts-dejavu-core all 2.37-8build1 [834 kB] 314s Get:9 http://ftpmaster.internal/ubuntu resolute/main s390x libfontenc1 s390x 1:1.1.8-1build2 [14.5 kB] 314s Get:10 http://ftpmaster.internal/ubuntu resolute/main s390x libfreetype6 s390x 2.14.1+dfsg-2 [443 kB] 314s Get:11 http://ftpmaster.internal/ubuntu resolute/main s390x x11-common all 1:7.7+24ubuntu1 [22.4 kB] 314s Get:12 http://ftpmaster.internal/ubuntu resolute/main s390x xfonts-encodings all 1:1.0.5-0ubuntu3 [576 kB] 314s Get:13 http://ftpmaster.internal/ubuntu resolute/main s390x xfonts-utils s390x 1:7.7+7build1 [101 kB] 314s Get:14 http://ftpmaster.internal/ubuntu resolute/main s390x fonts-urw-base35 all 20200910-8build1 [10.9 MB] 315s Get:15 http://ftpmaster.internal/ubuntu resolute/main s390x fontconfig-config s390x 2.17.1-3ubuntu1 [38.5 kB] 315s Get:16 http://ftpmaster.internal/ubuntu resolute/main s390x fonts-dejavu-extra all 2.37-8build1 [1944 kB] 315s Get:17 http://ftpmaster.internal/ubuntu resolute/universe s390x fonts-lyx all 2.5.0~RC2-3 [171 kB] 315s Get:18 http://ftpmaster.internal/ubuntu resolute/main s390x libfontconfig1 s390x 2.17.1-3ubuntu1 [152 kB] 315s Get:19 http://ftpmaster.internal/ubuntu resolute/main s390x libpixman-1-0 s390x 0.46.4-1 [217 kB] 315s Get:20 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-render0 s390x 1.17.0-2ubuntu1 [16.9 kB] 315s Get:21 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-shm0 s390x 1.17.0-2ubuntu1 [5926 B] 315s Get:22 http://ftpmaster.internal/ubuntu resolute/main s390x libxrender1 s390x 1:0.9.12-1 [20.9 kB] 315s Get:23 http://ftpmaster.internal/ubuntu resolute/main s390x libcairo2 s390x 1.18.4-3 [578 kB] 315s Get:24 http://ftpmaster.internal/ubuntu resolute/main s390x libdeflate0 s390x 1.23-2build1 [45.9 kB] 315s Get:25 http://ftpmaster.internal/ubuntu resolute/main s390x libgomp1 s390x 15.2.0-12ubuntu1 [154 kB] 315s Get:26 http://ftpmaster.internal/ubuntu resolute/main s390x libgraphite2-3 s390x 1.3.14-11ubuntu1 [80.5 kB] 315s Get:27 http://ftpmaster.internal/ubuntu resolute/main s390x libharfbuzz0b s390x 12.3.2-1 [562 kB] 315s Get:28 http://ftpmaster.internal/ubuntu resolute/main s390x libimagequant0 s390x 2.18.0-1build1 [43.3 kB] 315s Get:29 http://ftpmaster.internal/ubuntu resolute/main s390x libjpeg-turbo8 s390x 2.1.5-4ubuntu3 [156 kB] 315s Get:30 http://ftpmaster.internal/ubuntu resolute/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 315s Get:31 http://ftpmaster.internal/ubuntu resolute/main s390x liblcms2-2 s390x 2.17-1 [176 kB] 315s Get:32 http://ftpmaster.internal/ubuntu resolute/universe s390x libmbedcrypto16 s390x 3.6.5-0.1ubuntu2 [263 kB] 315s Get:33 http://ftpmaster.internal/ubuntu resolute/universe s390x libmbedx509-7 s390x 3.6.5-0.1ubuntu2 [34.8 kB] 315s Get:34 http://ftpmaster.internal/ubuntu resolute/universe s390x libmbedtls21 s390x 3.6.5-0.1ubuntu2 [126 kB] 315s Get:35 http://ftpmaster.internal/ubuntu resolute/universe s390x libqhull-r8.0 s390x 2020.2-8 [199 kB] 315s Get:36 http://ftpmaster.internal/ubuntu resolute/main s390x libraqm0 s390x 0.10.3-1build1 [15.8 kB] 315s Get:37 http://ftpmaster.internal/ubuntu resolute/main s390x libsharpyuv0 s390x 1.5.0-0.1build1 [16.6 kB] 315s Get:38 http://ftpmaster.internal/ubuntu resolute/main s390x libtcl8.6 s390x 8.6.17+dfsg-1build1 [1033 kB] 316s Get:39 http://ftpmaster.internal/ubuntu resolute/main s390x libjbig0 s390x 2.1-6.1ubuntu3 [32.8 kB] 316s Get:40 http://ftpmaster.internal/ubuntu resolute/main s390x libwebp7 s390x 1.5.0-0.1build1 [227 kB] 316s Get:41 http://ftpmaster.internal/ubuntu resolute/main s390x libtiff6 s390x 4.7.0-3ubuntu3 [222 kB] 316s Get:42 http://ftpmaster.internal/ubuntu resolute/main s390x libxft2 s390x 2.3.6-1build2 [48.0 kB] 316s Get:43 http://ftpmaster.internal/ubuntu resolute/main s390x libxss1 s390x 1:1.2.3-1build4 [7138 B] 316s Get:44 http://ftpmaster.internal/ubuntu resolute/main s390x libtk8.6 s390x 8.6.17-1 [828 kB] 316s Get:45 http://ftpmaster.internal/ubuntu resolute/main s390x libwebpdemux2 s390x 1.5.0-0.1build1 [12.5 kB] 316s Get:46 http://ftpmaster.internal/ubuntu resolute/main s390x libwebpmux3 s390x 1.5.0-0.1build1 [25.7 kB] 316s Get:47 http://ftpmaster.internal/ubuntu resolute/main s390x libxslt1.1 s390x 1.1.43-0.3 [163 kB] 316s Get:48 http://ftpmaster.internal/ubuntu resolute/universe s390x libzopfli1 s390x 1.0.3-3build1 [124 kB] 316s Get:49 http://ftpmaster.internal/ubuntu resolute/universe s390x mummer s390x 3.23+dfsg-8build1 [704 kB] 316s Get:50 http://ftpmaster.internal/ubuntu resolute/universe s390x ncbi-data all 6.1.20170106+dfsg2-7 [3969 kB] 316s Get:51 http://ftpmaster.internal/ubuntu resolute/universe s390x ncbi-blast+ s390x 2.16.0+ds-7 [15.2 MB] 318s Get:52 http://ftpmaster.internal/ubuntu resolute/universe s390x python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 318s Get:53 http://ftpmaster.internal/ubuntu resolute/main s390x python3.14 s390x 3.14.2-1 [816 kB] 318s Get:54 http://ftpmaster.internal/ubuntu resolute/main s390x python3-all s390x 3.13.9-3 [890 B] 318s Get:55 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-charset-normalizer s390x 3.4.4-2 [181 kB] 318s Get:56 http://ftpmaster.internal/ubuntu resolute/main s390x python3.13-tk s390x 3.13.11-1 [109 kB] 318s Get:57 http://ftpmaster.internal/ubuntu resolute/main s390x python3.14-tk s390x 3.14.2-1 [110 kB] 318s Get:58 http://ftpmaster.internal/ubuntu resolute/main s390x python3-tk s390x 3.13.9-3 [11.2 kB] 318s Get:59 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pil.imagetk s390x 12.0.0-1ubuntu1 [9884 B] 318s Get:60 http://ftpmaster.internal/ubuntu resolute/main s390x libopenjp2-7 s390x 2.5.4-1 [208 kB] 318s Get:61 http://ftpmaster.internal/ubuntu resolute/main s390x python3-pil s390x 12.0.0-1ubuntu1 [540 kB] 318s Get:62 http://ftpmaster.internal/ubuntu resolute/main s390x python3-cairo s390x 1.27.0-2build1 [140 kB] 318s Get:63 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-freetype all 2.5.1-2 [92.2 kB] 318s Get:64 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-rlpycairo all 0.3.0-4 [9332 B] 318s Get:65 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-reportlab all 4.4.9-1 [1149 kB] 318s Get:66 http://ftpmaster.internal/ubuntu resolute/main s390x sgml-base all 1.31+nmu1build1 [11.2 kB] 318s Get:67 http://ftpmaster.internal/ubuntu resolute/main s390x xml-core all 0.19build1 [20.3 kB] 318s Get:68 http://ftpmaster.internal/ubuntu resolute/universe s390x w3c-sgml-lib all 1.3-3build1 [278 kB] 318s Get:69 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-biopython s390x 1.86+dfsg-1 [1710 kB] 318s Get:70 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-brotli s390x 1.1.0-2build6 [386 kB] 318s Get:71 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-contourpy s390x 1.3.3-1 [266 kB] 318s Get:72 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-cycler all 0.12.1-2 [9850 B] 318s Get:73 http://ftpmaster.internal/ubuntu resolute/main s390x python3-decorator all 5.2.1-2 [28.1 kB] 318s Get:74 http://ftpmaster.internal/ubuntu resolute/main s390x python3-lxml s390x 6.0.2-1 [2478 kB] 318s Get:75 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-lz4 s390x 4.4.5+dfsg-1 [27.5 kB] 318s Get:76 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-scipy s390x 1.16.3-4 [19.7 MB] 319s Get:77 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-mpmath all 1.3.0-2 [423 kB] 319s Get:78 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-sympy all 1.14.0-2 [4306 kB] 320s Get:79 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-ufolib2 all 0.18.1+dfsg1-1 [33.7 kB] 320s Get:80 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-zopfli s390x 0.4.0-1 [11.2 kB] 320s Get:81 http://ftpmaster.internal/ubuntu resolute/universe s390x unicode-data all 16.0.0-1build1 [9543 kB] 321s Get:82 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-fonttools s390x 4.61.1-3 [1788 kB] 321s Get:83 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-iniconfig all 2.1.0-2 [6962 B] 321s Get:84 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-kiwisolver s390x 1.4.10~rc0-1 [65.0 kB] 321s Get:85 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-matplotlib s390x 3.10.7+dfsg1-1 [17.2 MB] 321s Get:86 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pytz all 2025.2-5 [32.4 kB] 321s Get:87 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pandas-lib s390x 2.3.3+dfsg-3 [7599 kB] 322s Get:88 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pandas all 2.3.3+dfsg-3 [2948 kB] 322s Get:89 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pluggy all 1.6.0-2 [21.1 kB] 322s Get:90 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-seaborn all 0.13.2-6 [225 kB] 322s Get:91 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pyani s390x 0.2.13-1 [46.7 kB] 322s Get:92 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pytest all 9.0.2-2 [277 kB] 325s Fetched 129 MB in 9s (14.4 MB/s) 325s Selecting previously unselected package python3-numpy-dev:s390x. 326s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88711 files and directories currently installed.) 326s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.5+ds-3_s390x.deb ... 326s Unpacking python3-numpy-dev:s390x (1:2.3.5+ds-3) ... 327s Selecting previously unselected package libblas3:s390x. 327s Preparing to unpack .../01-libblas3_3.12.1-7ubuntu1_s390x.deb ... 327s Unpacking libblas3:s390x (3.12.1-7ubuntu1) ... 327s Selecting previously unselected package libgfortran5:s390x. 327s Preparing to unpack .../02-libgfortran5_15.2.0-12ubuntu1_s390x.deb ... 327s Unpacking libgfortran5:s390x (15.2.0-12ubuntu1) ... 327s Selecting previously unselected package liblapack3:s390x. 327s Preparing to unpack .../03-liblapack3_3.12.1-7ubuntu1_s390x.deb ... 327s Unpacking liblapack3:s390x (3.12.1-7ubuntu1) ... 328s Selecting previously unselected package python3-numpy. 328s Preparing to unpack .../04-python3-numpy_1%3a2.3.5+ds-3_s390x.deb ... 328s Unpacking python3-numpy (1:2.3.5+ds-3) ... 331s Selecting previously unselected package python3.14-minimal. 331s Preparing to unpack .../05-python3.14-minimal_3.14.2-1_s390x.deb ... 332s Unpacking python3.14-minimal (3.14.2-1) ... 332s Selecting previously unselected package fonts-dejavu-mono. 332s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8build1_all.deb ... 332s Unpacking fonts-dejavu-mono (2.37-8build1) ... 332s Selecting previously unselected package fonts-dejavu-core. 332s Preparing to unpack .../07-fonts-dejavu-core_2.37-8build1_all.deb ... 333s Unpacking fonts-dejavu-core (2.37-8build1) ... 333s Selecting previously unselected package libfontenc1:s390x. 333s Preparing to unpack .../08-libfontenc1_1%3a1.1.8-1build2_s390x.deb ... 333s Unpacking libfontenc1:s390x (1:1.1.8-1build2) ... 333s Selecting previously unselected package libfreetype6:s390x. 333s Preparing to unpack .../09-libfreetype6_2.14.1+dfsg-2_s390x.deb ... 333s Unpacking libfreetype6:s390x (2.14.1+dfsg-2) ... 333s Selecting previously unselected package x11-common. 333s Preparing to unpack .../10-x11-common_1%3a7.7+24ubuntu1_all.deb ... 333s Unpacking x11-common (1:7.7+24ubuntu1) ... 334s Selecting previously unselected package xfonts-encodings. 334s Preparing to unpack .../11-xfonts-encodings_1%3a1.0.5-0ubuntu3_all.deb ... 334s Unpacking xfonts-encodings (1:1.0.5-0ubuntu3) ... 335s Selecting previously unselected package xfonts-utils. 335s Preparing to unpack .../12-xfonts-utils_1%3a7.7+7build1_s390x.deb ... 335s Unpacking xfonts-utils (1:7.7+7build1) ... 335s Selecting previously unselected package fonts-urw-base35. 335s Preparing to unpack .../13-fonts-urw-base35_20200910-8build1_all.deb ... 335s Unpacking fonts-urw-base35 (20200910-8build1) ... 336s Selecting previously unselected package fontconfig-config. 336s Preparing to unpack .../14-fontconfig-config_2.17.1-3ubuntu1_s390x.deb ... 337s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 337s Selecting previously unselected package fonts-dejavu-extra. 337s Preparing to unpack .../15-fonts-dejavu-extra_2.37-8build1_all.deb ... 337s Unpacking fonts-dejavu-extra (2.37-8build1) ... 338s Selecting previously unselected package fonts-lyx. 338s Preparing to unpack .../16-fonts-lyx_2.5.0~RC2-3_all.deb ... 338s Unpacking fonts-lyx (2.5.0~RC2-3) ... 338s Selecting previously unselected package libfontconfig1:s390x. 338s Preparing to unpack .../17-libfontconfig1_2.17.1-3ubuntu1_s390x.deb ... 338s Unpacking libfontconfig1:s390x (2.17.1-3ubuntu1) ... 339s Selecting previously unselected package libpixman-1-0:s390x. 339s Preparing to unpack .../18-libpixman-1-0_0.46.4-1_s390x.deb ... 339s Unpacking libpixman-1-0:s390x (0.46.4-1) ... 339s Selecting previously unselected package libxcb-render0:s390x. 339s Preparing to unpack .../19-libxcb-render0_1.17.0-2ubuntu1_s390x.deb ... 339s Unpacking libxcb-render0:s390x (1.17.0-2ubuntu1) ... 339s Selecting previously unselected package libxcb-shm0:s390x. 339s Preparing to unpack .../20-libxcb-shm0_1.17.0-2ubuntu1_s390x.deb ... 339s Unpacking libxcb-shm0:s390x (1.17.0-2ubuntu1) ... 339s Selecting previously unselected package libxrender1:s390x. 339s Preparing to unpack .../21-libxrender1_1%3a0.9.12-1_s390x.deb ... 339s Unpacking libxrender1:s390x (1:0.9.12-1) ... 339s Selecting previously unselected package libcairo2:s390x. 339s Preparing to unpack .../22-libcairo2_1.18.4-3_s390x.deb ... 339s Unpacking libcairo2:s390x (1.18.4-3) ... 339s Selecting previously unselected package libdeflate0:s390x. 339s Preparing to unpack .../23-libdeflate0_1.23-2build1_s390x.deb ... 339s Unpacking libdeflate0:s390x (1.23-2build1) ... 339s Selecting previously unselected package libgomp1:s390x. 339s Preparing to unpack .../24-libgomp1_15.2.0-12ubuntu1_s390x.deb ... 339s Unpacking libgomp1:s390x (15.2.0-12ubuntu1) ... 339s Selecting previously unselected package libgraphite2-3:s390x. 339s Preparing to unpack .../25-libgraphite2-3_1.3.14-11ubuntu1_s390x.deb ... 339s Unpacking libgraphite2-3:s390x (1.3.14-11ubuntu1) ... 339s Selecting previously unselected package libharfbuzz0b:s390x. 339s Preparing to unpack .../26-libharfbuzz0b_12.3.2-1_s390x.deb ... 340s Unpacking libharfbuzz0b:s390x (12.3.2-1) ... 340s Selecting previously unselected package libimagequant0:s390x. 340s Preparing to unpack .../27-libimagequant0_2.18.0-1build1_s390x.deb ... 340s Unpacking libimagequant0:s390x (2.18.0-1build1) ... 340s Selecting previously unselected package libjpeg-turbo8:s390x. 340s Preparing to unpack .../28-libjpeg-turbo8_2.1.5-4ubuntu3_s390x.deb ... 340s Unpacking libjpeg-turbo8:s390x (2.1.5-4ubuntu3) ... 340s Selecting previously unselected package libjpeg8:s390x. 340s Preparing to unpack .../29-libjpeg8_8c-2ubuntu11_s390x.deb ... 340s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 341s Selecting previously unselected package liblcms2-2:s390x. 341s Preparing to unpack .../30-liblcms2-2_2.17-1_s390x.deb ... 341s Unpacking liblcms2-2:s390x (2.17-1) ... 341s Selecting previously unselected package libmbedcrypto16:s390x. 341s Preparing to unpack .../31-libmbedcrypto16_3.6.5-0.1ubuntu2_s390x.deb ... 341s Unpacking libmbedcrypto16:s390x (3.6.5-0.1ubuntu2) ... 341s Selecting previously unselected package libmbedx509-7:s390x. 341s Preparing to unpack .../32-libmbedx509-7_3.6.5-0.1ubuntu2_s390x.deb ... 341s Unpacking libmbedx509-7:s390x (3.6.5-0.1ubuntu2) ... 341s Selecting previously unselected package libmbedtls21:s390x. 341s Preparing to unpack .../33-libmbedtls21_3.6.5-0.1ubuntu2_s390x.deb ... 341s Unpacking libmbedtls21:s390x (3.6.5-0.1ubuntu2) ... 341s Selecting previously unselected package libqhull-r8.0:s390x. 341s Preparing to unpack .../34-libqhull-r8.0_2020.2-8_s390x.deb ... 341s Unpacking libqhull-r8.0:s390x (2020.2-8) ... 341s Selecting previously unselected package libraqm0:s390x. 341s Preparing to unpack .../35-libraqm0_0.10.3-1build1_s390x.deb ... 341s Unpacking libraqm0:s390x (0.10.3-1build1) ... 341s Selecting previously unselected package libsharpyuv0:s390x. 341s Preparing to unpack .../36-libsharpyuv0_1.5.0-0.1build1_s390x.deb ... 341s Unpacking libsharpyuv0:s390x (1.5.0-0.1build1) ... 342s Selecting previously unselected package libtcl8.6:s390x. 342s Preparing to unpack .../37-libtcl8.6_8.6.17+dfsg-1build1_s390x.deb ... 342s Unpacking libtcl8.6:s390x (8.6.17+dfsg-1build1) ... 342s Selecting previously unselected package libjbig0:s390x. 342s Preparing to unpack .../38-libjbig0_2.1-6.1ubuntu3_s390x.deb ... 342s Unpacking libjbig0:s390x (2.1-6.1ubuntu3) ... 342s Selecting previously unselected package libwebp7:s390x. 342s Preparing to unpack .../39-libwebp7_1.5.0-0.1build1_s390x.deb ... 342s Unpacking libwebp7:s390x (1.5.0-0.1build1) ... 342s Selecting previously unselected package libtiff6:s390x. 342s Preparing to unpack .../40-libtiff6_4.7.0-3ubuntu3_s390x.deb ... 342s Unpacking libtiff6:s390x (4.7.0-3ubuntu3) ... 342s Selecting previously unselected package libxft2:s390x. 343s Preparing to unpack .../41-libxft2_2.3.6-1build2_s390x.deb ... 343s Unpacking libxft2:s390x (2.3.6-1build2) ... 343s Selecting previously unselected package libxss1:s390x. 343s Preparing to unpack .../42-libxss1_1%3a1.2.3-1build4_s390x.deb ... 343s Unpacking libxss1:s390x (1:1.2.3-1build4) ... 343s Selecting previously unselected package libtk8.6:s390x. 343s Preparing to unpack .../43-libtk8.6_8.6.17-1_s390x.deb ... 343s Unpacking libtk8.6:s390x (8.6.17-1) ... 343s Selecting previously unselected package libwebpdemux2:s390x. 343s Preparing to unpack .../44-libwebpdemux2_1.5.0-0.1build1_s390x.deb ... 343s Unpacking libwebpdemux2:s390x (1.5.0-0.1build1) ... 344s Selecting previously unselected package libwebpmux3:s390x. 344s Preparing to unpack .../45-libwebpmux3_1.5.0-0.1build1_s390x.deb ... 344s Unpacking libwebpmux3:s390x (1.5.0-0.1build1) ... 344s Selecting previously unselected package libxslt1.1:s390x. 344s Preparing to unpack .../46-libxslt1.1_1.1.43-0.3_s390x.deb ... 344s Unpacking libxslt1.1:s390x (1.1.43-0.3) ... 344s Selecting previously unselected package libzopfli1. 344s Preparing to unpack .../47-libzopfli1_1.0.3-3build1_s390x.deb ... 344s Unpacking libzopfli1 (1.0.3-3build1) ... 344s Selecting previously unselected package mummer. 344s Preparing to unpack .../48-mummer_3.23+dfsg-8build1_s390x.deb ... 344s Unpacking mummer (3.23+dfsg-8build1) ... 346s Selecting previously unselected package ncbi-data. 346s Preparing to unpack .../49-ncbi-data_6.1.20170106+dfsg2-7_all.deb ... 346s Unpacking ncbi-data (6.1.20170106+dfsg2-7) ... 347s Selecting previously unselected package ncbi-blast+. 347s Preparing to unpack .../50-ncbi-blast+_2.16.0+ds-7_s390x.deb ... 347s Unpacking ncbi-blast+ (2.16.0+ds-7) ... 351s Selecting previously unselected package python-matplotlib-data. 352s Preparing to unpack .../51-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 352s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 353s Selecting previously unselected package python3.14. 353s Preparing to unpack .../52-python3.14_3.14.2-1_s390x.deb ... 353s Unpacking python3.14 (3.14.2-1) ... 353s Selecting previously unselected package python3-all. 353s Preparing to unpack .../53-python3-all_3.13.9-3_s390x.deb ... 353s Unpacking python3-all (3.13.9-3) ... 353s Selecting previously unselected package python3-charset-normalizer. 353s Preparing to unpack .../54-python3-charset-normalizer_3.4.4-2_s390x.deb ... 353s Unpacking python3-charset-normalizer (3.4.4-2) ... 354s Selecting previously unselected package python3.13-tk. 354s Preparing to unpack .../55-python3.13-tk_3.13.11-1_s390x.deb ... 354s Unpacking python3.13-tk (3.13.11-1) ... 354s Selecting previously unselected package python3.14-tk. 354s Preparing to unpack .../56-python3.14-tk_3.14.2-1_s390x.deb ... 354s Unpacking python3.14-tk (3.14.2-1) ... 355s Selecting previously unselected package python3-tk. 355s Preparing to unpack .../57-python3-tk_3.13.9-3_s390x.deb ... 355s Unpacking python3-tk (3.13.9-3) ... 355s Selecting previously unselected package python3-pil.imagetk:s390x. 355s Preparing to unpack .../58-python3-pil.imagetk_12.0.0-1ubuntu1_s390x.deb ... 355s Unpacking python3-pil.imagetk:s390x (12.0.0-1ubuntu1) ... 355s Selecting previously unselected package libopenjp2-7:s390x. 355s Preparing to unpack .../59-libopenjp2-7_2.5.4-1_s390x.deb ... 355s Unpacking libopenjp2-7:s390x (2.5.4-1) ... 356s Selecting previously unselected package python3-pil:s390x. 356s Preparing to unpack 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... 358s Selecting previously unselected package xml-core. 358s Preparing to unpack .../66-xml-core_0.19build1_all.deb ... 358s Unpacking xml-core (0.19build1) ... 358s Selecting previously unselected package w3c-sgml-lib. 358s Preparing to unpack .../67-w3c-sgml-lib_1.3-3build1_all.deb ... 358s Unpacking w3c-sgml-lib (1.3-3build1) ... 358s Selecting previously unselected package python3-biopython. 358s Preparing to unpack .../68-python3-biopython_1.86+dfsg-1_s390x.deb ... 358s Unpacking python3-biopython (1.86+dfsg-1) ... 360s Selecting previously unselected package python3-brotli. 360s Preparing to unpack .../69-python3-brotli_1.1.0-2build6_s390x.deb ... 360s Unpacking python3-brotli (1.1.0-2build6) ... 361s Selecting previously unselected package python3-contourpy. 361s Preparing to unpack .../70-python3-contourpy_1.3.3-1_s390x.deb ... 361s Unpacking python3-contourpy (1.3.3-1) ... 361s Selecting previously unselected package python3-cycler. 361s Preparing to unpack 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385s Unpacking python3-pandas (2.3.3+dfsg-3) ... 388s Selecting previously unselected package python3-pluggy. 388s Preparing to unpack .../88-python3-pluggy_1.6.0-2_all.deb ... 388s Unpacking python3-pluggy (1.6.0-2) ... 388s Selecting previously unselected package python3-seaborn. 388s Preparing to unpack .../89-python3-seaborn_0.13.2-6_all.deb ... 388s Unpacking python3-seaborn (0.13.2-6) ... 389s Selecting previously unselected package python3-pyani. 389s Preparing to unpack .../90-python3-pyani_0.2.13-1_s390x.deb ... 389s Unpacking python3-pyani (0.2.13-1) ... 389s Selecting previously unselected package python3-pytest. 389s Preparing to unpack .../91-python3-pytest_9.0.2-2_all.deb ... 389s Unpacking python3-pytest (9.0.2-2) ... 389s Setting up libgraphite2-3:s390x (1.3.14-11ubuntu1) ... 389s Setting up liblcms2-2:s390x (2.17-1) ... 389s Setting up python3-iniconfig (2.1.0-2) ... 393s Setting up ncbi-data (6.1.20170106+dfsg2-7) ... 393s Setting up libpixman-1-0:s390x (0.46.4-1) ... 393s Setting up libsharpyuv0:s390x (1.5.0-0.1build1) ... 393s Setting up libxrender1:s390x (1:0.9.12-1) ... 393s Setting up python3-lz4 (4.4.5+dfsg-1) ... 395s Setting up libxcb-render0:s390x (1.17.0-2ubuntu1) ... 395s Setting up python3-charset-normalizer (3.4.4-2) ... 396s Setting up fonts-lyx (2.5.0~RC2-3) ... 396s Setting up x11-common (1:7.7+24ubuntu1) ... 399s Setting up libdeflate0:s390x (1.23-2build1) ... 399s Setting up libqhull-r8.0:s390x (2020.2-8) ... 399s Setting up python3-pytz (2025.2-5) ... 401s Setting up libxcb-shm0:s390x (1.17.0-2ubuntu1) ... 401s Setting up libgomp1:s390x (15.2.0-12ubuntu1) ... 401s Setting up libjbig0:s390x (2.1-6.1ubuntu3) ... 401s Setting up unicode-data (16.0.0-1build1) ... 401s Setting up python3-decorator (5.2.1-2) ... 402s Setting up libfontenc1:s390x (1:1.1.8-1build2) ... 402s Setting up libblas3:s390x (3.12.1-7ubuntu1) ... 404s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 404s Setting up libzopfli1 (1.0.3-3build1) ... 404s Setting up libfreetype6:s390x (2.14.1+dfsg-2) ... 404s Setting up python3-brotli (1.1.0-2build6) ... 405s Setting up xfonts-encodings (1:1.0.5-0ubuntu3) ... 405s Setting up python3-cycler (0.12.1-2) ... 407s Setting up libimagequant0:s390x (2.18.0-1build1) ... 407s Setting up fonts-dejavu-mono (2.37-8build1) ... 407s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 408s Setting up python3-numpy-dev:s390x (1:2.3.5+ds-3) ... 408s Setting up libtcl8.6:s390x (8.6.17+dfsg-1build1) ... 408s Setting up fonts-dejavu-core (2.37-8build1) ... 409s Setting up libjpeg-turbo8:s390x (2.1.5-4ubuntu3) ... 409s Setting up libgfortran5:s390x (15.2.0-12ubuntu1) ... 409s Setting up python3-pluggy (1.6.0-2) ... 410s Setting up libwebp7:s390x (1.5.0-0.1build1) ... 410s Setting up fonts-dejavu-extra (2.37-8build1) ... 410s Setting up libxslt1.1:s390x (1.1.43-0.3) ... 410s Setting up mummer (3.23+dfsg-8build1) ... 410s Setting up libopenjp2-7:s390x (2.5.4-1) ... 410s Setting up libharfbuzz0b:s390x (12.3.2-1) ... 410s Setting up sgml-base (1.31+nmu1build1) ... 410s Setting up libxss1:s390x (1:1.2.3-1build4) ... 410s Setting up libmbedcrypto16:s390x (3.6.5-0.1ubuntu2) ... 410s Setting up python3-mpmath (1.3.0-2) ... 417s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 417s Setting up libwebpmux3:s390x (1.5.0-0.1build1) ... 417s Setting up python3.14-minimal (3.14.2-1) ... 436s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 436s Setting up python3-sympy (1.14.0-2) ... 535s /usr/lib/python3/dist-packages/sympy/testing/runtests.py:283: SyntaxWarning: 'return' in a 'finally' block 535s return p.returncode 539s Setting up liblapack3:s390x (3.12.1-7ubuntu1) ... 539s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 539s Setting up fontconfig-config (2.17.1-3ubuntu1) ... 542s Setting up python3-pytest (9.0.2-2) ... 549s Setting up libwebpdemux2:s390x (1.5.0-0.1build1) ... 549s Setting up python3-freetype (2.5.1-2) ... 549s Setting up xfonts-utils (1:7.7+7build1) ... 550s Setting up python3-zopfli (0.4.0-1) ... 551s Setting up libmbedx509-7:s390x (3.6.5-0.1ubuntu2) ... 551s Setting up libraqm0:s390x (0.10.3-1build1) ... 551s Setting up python3-numpy (1:2.3.5+ds-3) ... 586s Setting up libmbedtls21:s390x (3.6.5-0.1ubuntu2) ... 586s Setting up python3-lxml:s390x (6.0.2-1) ... 589s Setting up libtiff6:s390x (4.7.0-3ubuntu3) ... 589s Setting up xml-core (0.19build1) ... 591s Setting up python3-contourpy (1.3.3-1) ... 592s Setting up libfontconfig1:s390x (2.17.1-3ubuntu1) ... 592s Setting up python3.14 (3.14.2-1) ... 605s Setting up libxft2:s390x (2.3.6-1build2) ... 605s Setting up python3-scipy (1.16.3-4) ... 661s Setting up libtk8.6:s390x (8.6.17-1) ... 661s Setting up python3-pandas-lib:s390x (2.3.3+dfsg-3) ... 661s Setting up python3-all (3.13.9-3) ... 661s Setting up fonts-urw-base35 (20200910-8build1) ... 663s Setting up libcairo2:s390x (1.18.4-3) ... 663s Setting up python3.13-tk (3.13.11-1) ... 663s Setting up ncbi-blast+ (2.16.0+ds-7) ... 663s Setting up python3-pil:s390x (12.0.0-1ubuntu1) ... 667s Setting up python3-pandas (2.3.3+dfsg-3) ... 736s Setting up python3.14-tk (3.14.2-1) ... 737s Setting up python3-cairo (1.27.0-2build1) ... 739s Setting up python3-tk (3.13.9-3) ... 739s Setting up python3-pil.imagetk:s390x (12.0.0-1ubuntu1) ... 740s Setting up python3-rlpycairo (0.3.0-4) ... 741s Setting up python3-reportlab (4.4.9-1) ... 751s Setting up python3-fonttools (4.61.1-3) ... 766s Setting up python3-ufolib2 (0.18.1+dfsg1-1) ... 768s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 790s Setting up python3-seaborn (0.13.2-6) ... 793s Processing triggers for systemd (259-1ubuntu3) ... 794s Processing triggers for man-db (2.13.1-1build1) ... 817s Processing triggers for libc-bin (2.42-2ubuntu4) ... 818s Processing triggers for sgml-base (1.31+nmu1build1) ... 818s Setting up w3c-sgml-lib (1.3-3build1) ... 1051s Setting up python3-biopython (1.86+dfsg-1) ... 1067s Setting up python3-pyani (0.2.13-1) ... 1072s autopkgtest [10:12:26]: test run-unit-test: [----------------------- 1074s Testing with python3.14 in /tmp/autopkgtest.b0vz9f/build.7zC/src: 1079s ============================= test session starts ============================== 1079s platform linux -- Python 3.13.11, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3 1079s cachedir: .pytest_cache 1079s rootdir: /tmp/autopkgtest.b0vz9f/build.7zC/src 1079s plugins: typeguard-4.4.4 1098s collecting ... collected 56 items 1098s 1098s tests/test_anib.py::TestBLASTCmdline::test_blastall_dbjobdict SKIPPED [ 1%] 1098s tests/test_anib.py::TestBLASTCmdline::test_blastall_generation SKIPPED [ 3%] 1098s tests/test_anib.py::TestBLASTCmdline::test_blastall_graph SKIPPED (l...) [ 5%] 1099s tests/test_anib.py::TestBLASTCmdline::test_blastdb_commands PASSED [ 7%] 1099s tests/test_anib.py::TestBLASTCmdline::test_blastn_commands PASSED [ 8%] 1099s tests/test_anib.py::TestBLASTCmdline::test_blastn_dbjobdict PASSED [ 10%] 1099s tests/test_anib.py::TestBLASTCmdline::test_blastn_generation PASSED [ 12%] 1114s tests/test_anib.py::TestBLASTCmdline::test_blastn_graph PASSED [ 14%] 1114s tests/test_anib.py::TestBLASTCmdline::test_formatdb_generation SKIPPED [ 16%] 1114s tests/test_anib.py::TestBLASTCmdline::test_legacy_blastdb_commands SKIPPED [ 17%] 1114s tests/test_anib.py::TestBLASTCmdline::test_legacy_blastn_commands SKIPPED [ 19%] 1114s tests/test_anib.py::TestBLASTCmdline::test_makeblastdb_generation PASSED [ 21%] 1130s tests/test_anib.py::TestFragments::test_fragment_files PASSED [ 23%] 1137s tests/test_anib.py::TestParsing::test_blastdir_processing PASSED [ 25%] 1137s tests/test_anib.py::TestParsing::test_legacy_blastdir_processing SKIPPED [ 26%] 1137s tests/test_anib.py::TestParsing::test_parse_blasttab SKIPPED (legacy...) [ 28%] 1137s tests/test_anim.py::TestNUCmerCmdline::test_maxmatch_cmd_generation PASSED [ 30%] 1137s tests/test_anim.py::TestNUCmerCmdline::test_multi_cmd_generation PASSED [ 32%] 1137s tests/test_anim.py::TestNUCmerCmdline::test_nucmer_job_generation PASSED [ 33%] 1137s tests/test_anim.py::TestNUCmerCmdline::test_single_cmd_generation PASSED [ 35%] 1137s tests/test_anim.py::TestDeltafileProcessing::test_deltafile_import PASSED [ 37%] 1138s tests/test_anim.py::TestDeltafileProcessing::test_process_deltadir PASSED [ 39%] 1292s tests/test_concordance.py::TestConcordance::test_anib_concordance PASSED [ 41%] 1292s tests/test_concordance.py::TestConcordance::test_aniblastall_concordance SKIPPED [ 42%] 1344s tests/test_concordance.py::TestConcordance::test_anim_concordance PASSED [ 44%] 1464s tests/test_concordance.py::TestConcordance::test_tetra_concordance PASSED [ 46%] 1464s tests/test_dependencies.py::test_import_biopython PASSED [ 48%] 1464s tests/test_dependencies.py::test_import_matplotlib PASSED [ 50%] 1464s tests/test_dependencies.py::test_import_numpy PASSED [ 51%] 1464s tests/test_dependencies.py::test_import_pandas PASSED [ 53%] 1464s tests/test_dependencies.py::test_import_scipy PASSED [ 55%] 1465s tests/test_dependencies.py::test_run_blast PASSED [ 57%] 1465s tests/test_dependencies.py::test_run_blastall SKIPPED (unconditional...) [ 58%] 1465s tests/test_dependencies.py::test_run_nucmer PASSED [ 60%] 1466s tests/test_graphics.py::test_png_mpl PASSED [ 62%] 1467s tests/test_graphics.py::test_svg_mpl PASSED [ 64%] 1470s tests/test_graphics.py::test_pdf_mpl PASSED [ 66%] 1472s tests/test_graphics.py::test_png_seaborn PASSED [ 67%] 1475s tests/test_graphics.py::test_svg_seaborn PASSED [ 69%] 1478s tests/test_graphics.py::test_pdf_seaborn PASSED [ 71%] 1478s tests/test_jobs.py::TestJob::test_add_dependency PASSED [ 73%] 1478s tests/test_jobs.py::TestJob::test_create_job PASSED [ 75%] 1478s tests/test_jobs.py::TestJob::test_create_job_with_command PASSED [ 76%] 1478s tests/test_jobs.py::TestJob::test_remove_dependency PASSED [ 78%] 1478s tests/test_jobs.py::TestJobGroup::test_1d_jobgroup PASSED [ 80%] 1478s tests/test_jobs.py::TestJobGroup::test_2d_jobgroup PASSED [ 82%] 1478s tests/test_jobs.py::TestJobGroup::test_add_dependency PASSED [ 83%] 1478s tests/test_jobs.py::TestJobGroup::test_create_jobgroup PASSED [ 85%] 1478s tests/test_jobs.py::TestJobGroup::test_remove_dependency PASSED [ 87%] 1478s tests/test_multiprocessing.py::TestMultiprocessing::test_cmdsets PASSED [ 89%] 2118s tests/test_multiprocessing.py::TestMultiprocessing::test_dependency_graph_run PASSED [ 91%] 2118s tests/test_multiprocessing.py::TestMultiprocessing::test_multiprocessing_run PASSED [ 92%] 2118s tests/test_parsing.py::test_anim_delta PASSED [ 94%] 2231s tests/test_tetra.py::TestTETRA::test_correlations PASSED [ 96%] 2231s tests/test_tetra.py::TestTETRA::test_tetraclean PASSED [ 98%] 2280s tests/test_tetra.py::TestTETRA::test_zscore PASSED [100%] 2280s 2280s =============================== warnings summary =============================== 2280s tests/test_anib.py::TestParsing::test_blastdir_processing 2280s tests/test_concordance.py::TestConcordance::test_anib_concordance 2280s /usr/lib/python3/dist-packages/pyani/anib.py:420: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 2280s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 2280s A typical example is when you are setting values in a column of a DataFrame, like: 2280s 2280s df["col"][row_indexer] = value 2280s 2280s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 2280s 2280s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 2280s 2280s results.alignment_lengths[org][org] = length 2280s 2280s tests/test_anim.py::TestDeltafileProcessing::test_process_deltadir 2280s tests/test_concordance.py::TestConcordance::test_anim_concordance 2280s /usr/lib/python3/dist-packages/pyani/anim.py:195: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 2280s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 2280s A typical example is when you are setting values in a column of a DataFrame, like: 2280s 2280s df["col"][row_indexer] = value 2280s 2280s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 2280s 2280s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 2280s 2280s results.alignment_lengths[org][org] = length 2280s 2280s tests/test_concordance.py::TestConcordance::test_anib_concordance 2280s tests/test_concordance.py::TestConcordance::test_anim_concordance 2280s tests/test_concordance.py::TestConcordance::test_tetra_concordance 2280s /tmp/autopkgtest.b0vz9f/build.7zC/src/tests/test_concordance.py:102: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 2280s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 2280s A typical example is when you are setting values in a column of a DataFrame, like: 2280s 2280s df["col"][row_indexer] = value 2280s 2280s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 2280s 2280s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 2280s 2280s data[columns[idx]][row] = 1.0 2280s 2280s tests/test_concordance.py::TestConcordance::test_anib_concordance 2280s tests/test_concordance.py::TestConcordance::test_anib_concordance 2280s tests/test_concordance.py::TestConcordance::test_anib_concordance 2280s tests/test_concordance.py::TestConcordance::test_anim_concordance 2280s tests/test_concordance.py::TestConcordance::test_anim_concordance 2280s tests/test_concordance.py::TestConcordance::test_anim_concordance 2280s tests/test_concordance.py::TestConcordance::test_tetra_concordance 2280s tests/test_concordance.py::TestConcordance::test_tetra_concordance 2280s tests/test_concordance.py::TestConcordance::test_tetra_concordance 2280s /tmp/autopkgtest.b0vz9f/build.7zC/src/tests/test_concordance.py:98: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 2280s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 2280s A typical example is when you are setting values in a column of a DataFrame, like: 2280s 2280s df["col"][row_indexer] = value 2280s 2280s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 2280s 2280s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 2280s 2280s data[columns[idx]][row] = float(val) 2280s 2280s tests/test_concordance.py::TestConcordance::test_anib_concordance 2280s tests/test_concordance.py::TestConcordance::test_anib_concordance 2280s tests/test_concordance.py::TestConcordance::test_anim_concordance 2280s tests/test_concordance.py::TestConcordance::test_anim_concordance 2280s tests/test_concordance.py::TestConcordance::test_tetra_concordance 2280s tests/test_concordance.py::TestConcordance::test_tetra_concordance 2280s /tmp/autopkgtest.b0vz9f/build.7zC/src/tests/test_concordance.py:100: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 2280s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 2280s A typical example is when you are setting values in a column of a DataFrame, like: 2280s 2280s df["col"][row_indexer] = value 2280s 2280s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 2280s 2280s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 2280s 2280s data[columns[idx]][row] = 100.0 2280s 2280s tests/test_concordance.py::TestConcordance::test_anib_concordance 2280s /tmp/autopkgtest.b0vz9f/build.7zC/src/tests/test_concordance.py:194: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` 2280s lo_target = self.target["ANIb"].mask(self.target["ANIb"] >= 90).fillna(0) 2280s 2280s tests/test_concordance.py::TestConcordance::test_anib_concordance 2280s /tmp/autopkgtest.b0vz9f/build.7zC/src/tests/test_concordance.py:195: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` 2280s hi_target = self.target["ANIb"].mask(self.target["ANIb"] < 90).fillna(0) 2280s 2280s tests/test_concordance.py::TestConcordance::test_tetra_concordance 2280s tests/test_tetra.py::TestTETRA::test_correlations 2280s /usr/lib/python3/dist-packages/pyani/tetra.py:156: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 2280s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 2280s A typical example is when you are setting values in a column of a DataFrame, like: 2280s 2280s df["col"][row_indexer] = value 2280s 2280s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 2280s 2280s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 2280s 2283s correlations[org1][org2] = diffprods / math.sqrt(zdiffs2[0] * zdiffs2[1]) 2283s 2283s tests/test_concordance.py::TestConcordance::test_tetra_concordance 2283s tests/test_tetra.py::TestTETRA::test_correlations 2283s /usr/lib/python3/dist-packages/pyani/tetra.py:157: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 2283s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 2283s A typical example is when you are setting values in a column of a DataFrame, like: 2283s 2283s df["col"][row_indexer] = value 2283s 2283s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 2283s 2283s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 2283s 2283s correlations[org2][org1] = correlations[org1][org2] 2283s 2283s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 2283s =========== 46 passed, 10 skipped, 28 warnings in 1200.28s (0:20:00) =========== 2286s Testing with python3.13 in /tmp/autopkgtest.b0vz9f/build.7zC/src: 2288s ============================= test session starts ============================== 2288s platform linux -- Python 3.13.11, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3 2288s cachedir: .pytest_cache 2288s rootdir: /tmp/autopkgtest.b0vz9f/build.7zC/src 2288s plugins: typeguard-4.4.4 2296s collecting ... collected 56 items 2296s 2296s tests/test_anib.py::TestBLASTCmdline::test_blastall_dbjobdict SKIPPED [ 1%] 2296s tests/test_anib.py::TestBLASTCmdline::test_blastall_generation SKIPPED [ 3%] 2296s tests/test_anib.py::TestBLASTCmdline::test_blastall_graph SKIPPED (l...) [ 5%] 2296s tests/test_anib.py::TestBLASTCmdline::test_blastdb_commands PASSED [ 7%] 2296s tests/test_anib.py::TestBLASTCmdline::test_blastn_commands PASSED [ 8%] 2296s tests/test_anib.py::TestBLASTCmdline::test_blastn_dbjobdict PASSED [ 10%] 2296s tests/test_anib.py::TestBLASTCmdline::test_blastn_generation PASSED [ 12%] 2312s tests/test_anib.py::TestBLASTCmdline::test_blastn_graph PASSED [ 14%] 2312s tests/test_anib.py::TestBLASTCmdline::test_formatdb_generation SKIPPED [ 16%] 2312s tests/test_anib.py::TestBLASTCmdline::test_legacy_blastdb_commands SKIPPED [ 17%] 2312s tests/test_anib.py::TestBLASTCmdline::test_legacy_blastn_commands SKIPPED [ 19%] 2312s tests/test_anib.py::TestBLASTCmdline::test_makeblastdb_generation PASSED [ 21%] 2325s tests/test_anib.py::TestFragments::test_fragment_files PASSED [ 23%] 2332s tests/test_anib.py::TestParsing::test_blastdir_processing PASSED [ 25%] 2332s tests/test_anib.py::TestParsing::test_legacy_blastdir_processing SKIPPED [ 26%] 2332s tests/test_anib.py::TestParsing::test_parse_blasttab SKIPPED (legacy...) [ 28%] 2332s tests/test_anim.py::TestNUCmerCmdline::test_maxmatch_cmd_generation PASSED [ 30%] 2332s tests/test_anim.py::TestNUCmerCmdline::test_multi_cmd_generation PASSED [ 32%] 2332s tests/test_anim.py::TestNUCmerCmdline::test_nucmer_job_generation PASSED [ 33%] 2332s tests/test_anim.py::TestNUCmerCmdline::test_single_cmd_generation PASSED [ 35%] 2332s tests/test_anim.py::TestDeltafileProcessing::test_deltafile_import PASSED [ 37%] 2333s tests/test_anim.py::TestDeltafileProcessing::test_process_deltadir PASSED [ 39%] 2490s tests/test_concordance.py::TestConcordance::test_anib_concordance PASSED [ 41%] 2490s tests/test_concordance.py::TestConcordance::test_aniblastall_concordance SKIPPED [ 42%] 2543s tests/test_concordance.py::TestConcordance::test_anim_concordance PASSED [ 44%] 2668s tests/test_concordance.py::TestConcordance::test_tetra_concordance PASSED [ 46%] 2668s tests/test_dependencies.py::test_import_biopython PASSED [ 48%] 2668s tests/test_dependencies.py::test_import_matplotlib PASSED [ 50%] 2668s tests/test_dependencies.py::test_import_numpy PASSED [ 51%] 2668s tests/test_dependencies.py::test_import_pandas PASSED [ 53%] 2668s tests/test_dependencies.py::test_import_scipy PASSED [ 55%] 2668s tests/test_dependencies.py::test_run_blast PASSED [ 57%] 2668s tests/test_dependencies.py::test_run_blastall SKIPPED (unconditional...) [ 58%] 2668s tests/test_dependencies.py::test_run_nucmer PASSED [ 60%] 2669s tests/test_graphics.py::test_png_mpl PASSED [ 62%] 2670s tests/test_graphics.py::test_svg_mpl PASSED [ 64%] 2672s tests/test_graphics.py::test_pdf_mpl PASSED [ 66%] 2675s tests/test_graphics.py::test_png_seaborn PASSED [ 67%] 2677s tests/test_graphics.py::test_svg_seaborn PASSED [ 69%] 2679s tests/test_graphics.py::test_pdf_seaborn PASSED [ 71%] 2679s tests/test_jobs.py::TestJob::test_add_dependency PASSED [ 73%] 2679s tests/test_jobs.py::TestJob::test_create_job PASSED [ 75%] 2679s tests/test_jobs.py::TestJob::test_create_job_with_command PASSED [ 76%] 2679s tests/test_jobs.py::TestJob::test_remove_dependency PASSED [ 78%] 2679s tests/test_jobs.py::TestJobGroup::test_1d_jobgroup PASSED [ 80%] 2679s tests/test_jobs.py::TestJobGroup::test_2d_jobgroup PASSED [ 82%] 2679s tests/test_jobs.py::TestJobGroup::test_add_dependency PASSED [ 83%] 2679s tests/test_jobs.py::TestJobGroup::test_create_jobgroup PASSED [ 85%] 2679s tests/test_jobs.py::TestJobGroup::test_remove_dependency PASSED [ 87%] 2679s tests/test_multiprocessing.py::TestMultiprocessing::test_cmdsets PASSED [ 89%] 4484s tests/test_multiprocessing.py::TestMultiprocessing::test_dependency_graph_run autopkgtest-virt-ssh [11:09:18]: ------- nova console-log 7ae7aaf6-0704-49a7-9eba-1f988fe034ce (adt-resolute-s390x-python-pyani-20260208-073310-juju-7f2275-prod-proposed-migration-environment-20-09bc36b1-d541-43a2-a741-760b5125a908) ------ 4484s ERROR (CommandError): No server with a name or ID of '7ae7aaf6-0704-49a7-9eba-1f988fe034ce' exists. 4484s --------------------------------------------------- 4484s ------- nova show 7ae7aaf6-0704-49a7-9eba-1f988fe034ce (adt-resolute-s390x-python-pyani-20260208-073310-juju-7f2275-prod-proposed-migration-environment-20-09bc36b1-d541-43a2-a741-760b5125a908) ------ 4484s ERROR (CommandError): No server with a name or ID of '7ae7aaf6-0704-49a7-9eba-1f988fe034ce' exists. 4484s --------------------------------------------------- 4484s 5029s autopkgtest [11:18:23]: ERROR: testbed failure: testbed auxverb failed with exit code 255