0s autopkgtest [17:01:39]: starting date and time: 2025-11-17 17:01:39+0000 0s autopkgtest [17:01:39]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [17:01:39]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.39k0gn1k/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest --apt-upgrade python-hdf5storage --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pytest/8.4.2-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-5.secgroup --name adt-resolute-s390x-python-hdf5storage-20251117-170139-juju-7f2275-prod-proposed-migration-environment-15-b20c1f50-db99-44cf-b55d-34eaa561580b --image adt/ubuntu-resolute-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-s390x-python-hdf5storage-20251117-170139-juju-7f2275-prod-proposed-migration-environment-15-b20c1f50-db99-44cf-b55d-34eaa561580b from image adt/ubuntu-resolute-s390x-server-20251117.img (UUID a3a3e3b9-e6ba-478c-a5e9-fce6f0982a95)... 47s autopkgtest [17:02:26]: testbed dpkg architecture: s390x 47s autopkgtest [17:02:26]: testbed apt version: 3.1.11 48s autopkgtest [17:02:27]: @@@@@@@@@@@@@@@@@@@@ test bed setup 48s autopkgtest [17:02:27]: testbed release detected to be: None 49s autopkgtest [17:02:28]: updating testbed package index (apt update) 49s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 49s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 49s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 49s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 49s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [779 kB] 50s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9852 B] 50s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.9 kB] 50s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [73.2 kB] 50s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x Packages [134 kB] 50s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted s390x Packages [940 B] 50s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe s390x Packages [488 kB] 50s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse s390x Packages [10.6 kB] 50s Fetched 1606 kB in 1s (1427 kB/s) 51s Reading package lists... 51s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 51s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 51s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 52s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 52s Reading package lists... 52s Reading package lists... 52s Building dependency tree... 52s Reading state information... 53s Calculating upgrade... 53s The following packages will be upgraded: 53s apt libapt-pkg7.0 libcrypt-dev libcrypt1 usbutils 53s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 53s Need to get 2926 kB of archives. 53s After this operation, 50.2 kB of additional disk space will be used. 53s Get:1 http://ftpmaster.internal/ubuntu resolute/main s390x libcrypt-dev s390x 1:4.5.1-1 [127 kB] 53s Get:2 http://ftpmaster.internal/ubuntu resolute/main s390x libcrypt1 s390x 1:4.5.1-1 [96.1 kB] 53s Get:3 http://ftpmaster.internal/ubuntu resolute/main s390x libapt-pkg7.0 s390x 3.1.12 [1150 kB] 55s Get:4 http://ftpmaster.internal/ubuntu resolute/main s390x apt s390x 3.1.12 [1468 kB] 56s Get:5 http://ftpmaster.internal/ubuntu resolute/main s390x usbutils s390x 1:019-1 [85.6 kB] 57s dpkg-preconfigure: unable to re-open stdin: No such file or directory 57s Fetched 2926 kB in 4s (791 kB/s) 59s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61309 files and directories currently installed.) 59s Preparing to unpack .../libcrypt-dev_1%3a4.5.1-1_s390x.deb ... 59s Unpacking libcrypt-dev:s390x (1:4.5.1-1) over (1:4.4.38-1build1) ... 59s Preparing to unpack .../libcrypt1_1%3a4.5.1-1_s390x.deb ... 59s Unpacking libcrypt1:s390x (1:4.5.1-1) over (1:4.4.38-1build1) ... 59s Setting up libcrypt1:s390x (1:4.5.1-1) ... 59s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61309 files and directories currently installed.) 59s Preparing to unpack .../libapt-pkg7.0_3.1.12_s390x.deb ... 59s Unpacking libapt-pkg7.0:s390x (3.1.12) over (3.1.11) ... 60s Preparing to unpack .../archives/apt_3.1.12_s390x.deb ... 60s Unpacking apt (3.1.12) over (3.1.11) ... 60s Preparing to unpack .../usbutils_1%3a019-1_s390x.deb ... 60s Unpacking usbutils (1:019-1) over (1:018-2) ... 60s Setting up usbutils (1:019-1) ... 60s Setting up libcrypt-dev:s390x (1:4.5.1-1) ... 60s Setting up libapt-pkg7.0:s390x (3.1.12) ... 60s Setting up apt (3.1.12) ... 61s Processing triggers for man-db (2.13.1-1) ... 69s Processing triggers for libc-bin (2.42-2ubuntu2) ... 70s autopkgtest [17:02:49]: upgrading testbed (apt dist-upgrade and autopurge) 70s Reading package lists... 71s Building dependency tree... 71s Reading state information... 71s Calculating upgrade... 71s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 71s Reading package lists... 71s Building dependency tree... 71s Reading state information... 71s Solving dependencies... 71s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 71s autopkgtest [17:02:50]: rebooting testbed after setup commands that affected boot 91s autopkgtest [17:03:10]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP Mon Sep 22 08:56:47 UTC 2025 94s autopkgtest [17:03:13]: @@@@@@@@@@@@@@@@@@@@ apt-source python-hdf5storage 96s Get:1 http://ftpmaster.internal/ubuntu resolute/universe python-hdf5storage 0.1.19-4 (dsc) [2495 B] 96s Get:2 http://ftpmaster.internal/ubuntu resolute/universe python-hdf5storage 0.1.19-4 (tar) [92.3 kB] 96s Get:3 http://ftpmaster.internal/ubuntu resolute/universe python-hdf5storage 0.1.19-4 (diff) [7740 B] 97s gpgv: Signature made Mon Feb 3 17:09:51 2025 UTC 97s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 97s gpgv: issuer "tchet@debian.org" 97s gpgv: Can't check signature: No public key 97s dpkg-source: warning: cannot verify inline signature for ./python-hdf5storage_0.1.19-4.dsc: no acceptable signature found 97s autopkgtest [17:03:16]: testing package python-hdf5storage version 0.1.19-4 97s autopkgtest [17:03:16]: build not needed 98s autopkgtest [17:03:17]: test command1: preparing testbed 98s Reading package lists... 98s Building dependency tree... 98s Reading state information... 98s Solving dependencies... 98s The following NEW packages will be installed: 98s libaec0 libblas3 libgfortran5 libhdf5-310 libhdf5-hl-310 liblapack3 liblzf1 98s libsz2 python3-decorator python3-h5py python3-h5py-serial 98s python3-hdf5storage python3-iniconfig python3-numpy python3-numpy-dev 98s python3-pluggy python3-pytest python3-scipy 99s 0 upgraded, 18 newly installed, 0 to remove and 0 not upgraded. 99s Need to get 32.8 MB of archives. 99s After this operation, 162 MB of additional disk space will be used. 99s Get:1 http://ftpmaster.internal/ubuntu resolute/main s390x python3-numpy-dev s390x 1:2.2.4+ds-1ubuntu1 [147 kB] 99s Get:2 http://ftpmaster.internal/ubuntu resolute/main s390x libblas3 s390x 3.12.1-7 [254 kB] 99s Get:3 http://ftpmaster.internal/ubuntu resolute/main s390x libgfortran5 s390x 15.2.0-7ubuntu1 [629 kB] 100s Get:4 http://ftpmaster.internal/ubuntu resolute/main s390x liblapack3 s390x 3.12.1-7 [2983 kB] 101s Get:5 http://ftpmaster.internal/ubuntu resolute/main s390x python3-numpy s390x 1:2.2.4+ds-1ubuntu1 [4399 kB] 102s Get:6 http://ftpmaster.internal/ubuntu resolute/universe s390x libaec0 s390x 1.1.4-2 [26.1 kB] 102s Get:7 http://ftpmaster.internal/ubuntu resolute/universe s390x libsz2 s390x 1.1.4-2 [5628 B] 102s Get:8 http://ftpmaster.internal/ubuntu resolute/universe s390x libhdf5-310 s390x 1.14.5+repack-4 [1472 kB] 103s Get:9 http://ftpmaster.internal/ubuntu resolute/universe s390x libhdf5-hl-310 s390x 1.14.5+repack-4 [60.9 kB] 103s Get:10 http://ftpmaster.internal/ubuntu resolute/universe s390x liblzf1 s390x 3.6-4 [7020 B] 103s Get:11 http://ftpmaster.internal/ubuntu resolute/main s390x python3-decorator all 5.2.1-2 [28.1 kB] 103s Get:12 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-h5py-serial s390x 3.13.0-1ubuntu1 [1182 kB] 103s Get:13 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-h5py all 3.13.0-1ubuntu1 [8230 B] 103s Get:14 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-hdf5storage all 0.1.19-4 [45.0 kB] 103s Get:15 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-iniconfig all 2.1.0-1 [6840 B] 103s Get:16 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pluggy all 1.6.0-1 [21.0 kB] 103s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe s390x python3-pytest all 8.4.2-1 [268 kB] 103s Get:18 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-scipy s390x 1.15.3-1ubuntu1 [21.3 MB] 105s Fetched 32.8 MB in 6s (5076 kB/s) 105s Selecting previously unselected package python3-numpy-dev:s390x. 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61309 files and directories currently installed.) 107s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_s390x.deb ... 107s Unpacking python3-numpy-dev:s390x (1:2.2.4+ds-1ubuntu1) ... 107s Selecting previously unselected package libblas3:s390x. 107s Preparing to unpack .../01-libblas3_3.12.1-7_s390x.deb ... 107s Unpacking libblas3:s390x (3.12.1-7) ... 107s Selecting previously unselected package libgfortran5:s390x. 107s Preparing to unpack .../02-libgfortran5_15.2.0-7ubuntu1_s390x.deb ... 107s Unpacking libgfortran5:s390x (15.2.0-7ubuntu1) ... 107s Selecting previously unselected package liblapack3:s390x. 107s Preparing to unpack .../03-liblapack3_3.12.1-7_s390x.deb ... 107s Unpacking liblapack3:s390x (3.12.1-7) ... 107s Selecting previously unselected package python3-numpy. 107s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_s390x.deb ... 107s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 107s Selecting previously unselected package libaec0:s390x. 107s Preparing to unpack .../05-libaec0_1.1.4-2_s390x.deb ... 107s Unpacking libaec0:s390x (1.1.4-2) ... 107s Selecting previously unselected package libsz2:s390x. 107s Preparing to unpack .../06-libsz2_1.1.4-2_s390x.deb ... 107s Unpacking libsz2:s390x (1.1.4-2) ... 107s Selecting previously unselected package libhdf5-310:s390x. 107s Preparing to unpack .../07-libhdf5-310_1.14.5+repack-4_s390x.deb ... 107s Unpacking libhdf5-310:s390x (1.14.5+repack-4) ... 107s Selecting previously unselected package libhdf5-hl-310:s390x. 107s Preparing to unpack .../08-libhdf5-hl-310_1.14.5+repack-4_s390x.deb ... 107s Unpacking libhdf5-hl-310:s390x (1.14.5+repack-4) ... 107s Selecting previously unselected package liblzf1:s390x. 107s Preparing to unpack .../09-liblzf1_3.6-4_s390x.deb ... 107s Unpacking liblzf1:s390x (3.6-4) ... 107s Selecting previously unselected package python3-decorator. 107s Preparing to unpack .../10-python3-decorator_5.2.1-2_all.deb ... 107s Unpacking python3-decorator (5.2.1-2) ... 107s Selecting previously unselected package python3-h5py-serial. 107s Preparing to unpack .../11-python3-h5py-serial_3.13.0-1ubuntu1_s390x.deb ... 107s Unpacking python3-h5py-serial (3.13.0-1ubuntu1) ... 107s Selecting previously unselected package python3-h5py. 107s Preparing to unpack .../12-python3-h5py_3.13.0-1ubuntu1_all.deb ... 107s Unpacking python3-h5py (3.13.0-1ubuntu1) ... 107s Selecting previously unselected package python3-hdf5storage. 107s Preparing to unpack .../13-python3-hdf5storage_0.1.19-4_all.deb ... 107s Unpacking python3-hdf5storage (0.1.19-4) ... 107s Selecting previously unselected package python3-iniconfig. 107s Preparing to unpack .../14-python3-iniconfig_2.1.0-1_all.deb ... 107s Unpacking python3-iniconfig (2.1.0-1) ... 107s Selecting previously unselected package python3-pluggy. 107s Preparing to unpack .../15-python3-pluggy_1.6.0-1_all.deb ... 107s Unpacking python3-pluggy (1.6.0-1) ... 107s Selecting previously unselected package python3-pytest. 107s Preparing to unpack .../16-python3-pytest_8.4.2-1_all.deb ... 107s Unpacking python3-pytest (8.4.2-1) ... 107s Selecting previously unselected package python3-scipy. 107s Preparing to unpack .../17-python3-scipy_1.15.3-1ubuntu1_s390x.deb ... 107s Unpacking python3-scipy (1.15.3-1ubuntu1) ... 108s Setting up python3-iniconfig (2.1.0-1) ... 108s Setting up libaec0:s390x (1.1.4-2) ... 108s Setting up python3-decorator (5.2.1-2) ... 108s Setting up libblas3:s390x (3.12.1-7) ... 108s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 108s Setting up liblzf1:s390x (3.6-4) ... 108s Setting up python3-numpy-dev:s390x (1:2.2.4+ds-1ubuntu1) ... 108s Setting up libgfortran5:s390x (15.2.0-7ubuntu1) ... 108s Setting up python3-pluggy (1.6.0-1) ... 108s Setting up libsz2:s390x (1.1.4-2) ... 108s Setting up liblapack3:s390x (3.12.1-7) ... 108s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 108s Setting up python3-pytest (8.4.2-1) ... 109s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 110s Setting up libhdf5-310:s390x (1.14.5+repack-4) ... 110s Setting up libhdf5-hl-310:s390x (1.14.5+repack-4) ... 110s Setting up python3-scipy (1.15.3-1ubuntu1) ... 114s Setting up python3-h5py-serial (3.13.0-1ubuntu1) ... 115s Setting up python3-h5py (3.13.0-1ubuntu1) ... 115s Setting up python3-hdf5storage (0.1.19-4) ... 115s Processing triggers for man-db (2.13.1-1) ... 117s Processing triggers for libc-bin (2.42-2ubuntu2) ... 118s autopkgtest [17:03:37]: test command1: cp -a ./tests $AUTOPKGTEST_TMP; cd $AUTOPKGTEST_TMP; python3 -m pytest -v tests 118s autopkgtest [17:03:37]: test command1: [----------------------- 119s ============================= test session starts ============================== 119s platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 -- /usr/bin/python3 119s cachedir: .pytest_cache 119s rootdir: /tmp/autopkgtest.a2gis4/autopkgtest_tmp 119s plugins: typeguard-4.4.2 120s collecting ... collected 5 items / 3 errors 120s 120s ==================================== ERRORS ==================================== 120s _________________ ERROR collecting tests/test_hdf5_filters.py __________________ 120s 'yield' keyword is allowed in fixtures, but not in tests (test_read_filtered_data) 120s _____________ ERROR collecting tests/test_matlab_compatibility.py ______________ 120s 'yield' keyword is allowed in fixtures, but not in tests (test_read_from_matlab) 120s ____________ ERROR collecting tests/test_string_utf16_conversion.py ____________ 120s 'yield' keyword is allowed in fixtures, but not in tests (test_conv_utf16) 120s =============================== warnings summary =============================== 120s ../../../usr/lib/python3/dist-packages/hdf5storage/utilities.py:44 120s /usr/lib/python3/dist-packages/hdf5storage/utilities.py:44: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 120s from pkg_resources import parse_version 120s 120s tests/test_write_readback.py:68 120s /tmp/autopkgtest.a2gis4/autopkgtest_tmp/tests/test_write_readback.py:68: PytestCollectionWarning: cannot collect test class 'TestPythonMatlabFormat' because it has a __init__ constructor (from: tests/test_write_readback.py) 120s class TestPythonMatlabFormat(object): 120s 120s tests/test_write_readback.py:669 120s /tmp/autopkgtest.a2gis4/autopkgtest_tmp/tests/test_write_readback.py:669: PytestCollectionWarning: cannot collect test class 'TestPythonFormat' because it has a __init__ constructor (from: tests/test_write_readback.py) 120s class TestPythonFormat(TestPythonMatlabFormat): 120s 120s tests/test_write_readback.py:702 120s /tmp/autopkgtest.a2gis4/autopkgtest_tmp/tests/test_write_readback.py:702: PytestCollectionWarning: cannot collect test class 'TestNoneFormat' because it has a __init__ constructor (from: tests/test_write_readback.py) 120s class TestNoneFormat(TestPythonMatlabFormat): 120s 120s tests/test_write_readback.py:741 120s /tmp/autopkgtest.a2gis4/autopkgtest_tmp/tests/test_write_readback.py:741: PytestCollectionWarning: cannot collect test class 'TestMatlabFormat' because it has a __init__ constructor (from: tests/test_write_readback.py) 120s class TestMatlabFormat(TestPythonMatlabFormat): 120s 120s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 120s =========================== short test summary info ============================ 120s ERROR tests/test_hdf5_filters.py - Failed: 'yield' keyword is allowed in fixt... 120s ERROR tests/test_matlab_compatibility.py - Failed: 'yield' keyword is allowed... 120s ERROR tests/test_string_utf16_conversion.py - Failed: 'yield' keyword is allo... 120s !!!!!!!!!!!!!!!!!!! Interrupted: 3 errors during collection !!!!!!!!!!!!!!!!!!!! 120s ======================== 5 warnings, 3 errors in 0.64s ========================= 120s autopkgtest [17:03:39]: test command1: -----------------------] 121s autopkgtest [17:03:40]: test command1: - - - - - - - - - - results - - - - - - - - - - 121s command1 FAIL non-zero exit status 2 121s autopkgtest [17:03:40]: @@@@@@@@@@@@@@@@@@@@ summary 121s command1 FAIL non-zero exit status 2