0s autopkgtest [11:10:05]: starting date and time: 2025-11-04 11:10:05+0000 0s autopkgtest [11:10:05]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [11:10:05]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.v3am8u3e/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest --apt-upgrade python-gffutils --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pytest/8.4.2-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-10.secgroup --name adt-resolute-s390x-python-gffutils-20251104-111005-juju-7f2275-prod-proposed-migration-environment-2-7a11b937-7d01-466e-8df5-a35fa20c11cc --image adt/ubuntu-resolute-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-s390x-python-gffutils-20251104-111005-juju-7f2275-prod-proposed-migration-environment-2-7a11b937-7d01-466e-8df5-a35fa20c11cc from image adt/ubuntu-resolute-s390x-server-20251104.img (UUID 80285f34-81f0-4ef3-9458-279742a38e4e)... 48s autopkgtest [11:10:53]: testbed dpkg architecture: s390x 48s autopkgtest [11:10:53]: testbed apt version: 3.1.11 49s autopkgtest [11:10:54]: @@@@@@@@@@@@@@@@@@@@ test bed setup 49s autopkgtest [11:10:54]: testbed release detected to be: None 50s autopkgtest [11:10:55]: updating testbed package index (apt update) 50s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 50s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 50s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 50s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 50s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1009 kB] 51s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [79.5 kB] 51s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [23.7 kB] 51s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 51s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x Packages [116 kB] 51s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted s390x Packages [940 B] 51s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe s390x Packages [612 kB] 51s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse s390x Packages [11.6 kB] 51s Fetched 1950 kB in 1s (1674 kB/s) 52s Reading package lists... 52s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 52s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 53s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 53s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 53s Reading package lists... 53s Reading package lists... 53s Building dependency tree... 53s Reading state information... 53s Calculating upgrade... 54s The following packages will be upgraded: 54s base-passwd bash-completion iputils-tracepath liblz4-1 54s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 54s Need to get 369 kB of archives. 54s After this operation, 10.2 kB of additional disk space will be used. 54s Get:1 http://ftpmaster.internal/ubuntu resolute/main s390x base-passwd s390x 3.6.8 [54.9 kB] 54s Get:2 http://ftpmaster.internal/ubuntu resolute/main s390x liblz4-1 s390x 1.10.0-6 [84.6 kB] 54s Get:3 http://ftpmaster.internal/ubuntu resolute/main s390x bash-completion all 1:2.16.0-8 [214 kB] 54s Get:4 http://ftpmaster.internal/ubuntu resolute/main s390x iputils-tracepath s390x 3:20250605-1ubuntu1 [14.8 kB] 54s dpkg-preconfigure: unable to re-open stdin: No such file or directory 55s Fetched 369 kB in 1s (655 kB/s) 55s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56953 files and directories currently installed.) 55s Preparing to unpack .../base-passwd_3.6.8_s390x.deb ... 55s Unpacking base-passwd (3.6.8) over (3.6.7) ... 55s Setting up base-passwd (3.6.8) ... 55s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56953 files and directories currently installed.) 55s Preparing to unpack .../liblz4-1_1.10.0-6_s390x.deb ... 56s Unpacking liblz4-1:s390x (1.10.0-6) over (1.10.0-4build1) ... 56s Preparing to unpack .../bash-completion_1%3a2.16.0-8_all.deb ... 56s Unpacking bash-completion (1:2.16.0-8) over (1:2.16.0-7) ... 56s Preparing to unpack .../iputils-tracepath_3%3a20250605-1ubuntu1_s390x.deb ... 56s Unpacking iputils-tracepath (3:20250605-1ubuntu1) over (3:20240905-3ubuntu3) ... 56s Setting up liblz4-1:s390x (1.10.0-6) ... 56s Setting up bash-completion (1:2.16.0-8) ... 56s Setting up iputils-tracepath (3:20250605-1ubuntu1) ... 56s Processing triggers for man-db (2.13.1-1) ... 59s Processing triggers for libc-bin (2.42-0ubuntu3) ... 59s autopkgtest [11:11:04]: upgrading testbed (apt dist-upgrade and autopurge) 59s Reading package lists... 59s Building dependency tree... 59s Reading state information... 59s Calculating upgrade... 60s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 60s Reading package lists... 60s Building dependency tree... 60s Reading state information... 60s Solving dependencies... 60s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 62s autopkgtest [11:11:07]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP Mon Sep 22 08:56:47 UTC 2025 62s autopkgtest [11:11:07]: @@@@@@@@@@@@@@@@@@@@ apt-source python-gffutils 64s Get:1 http://ftpmaster.internal/ubuntu resolute/universe python-gffutils 0.13-3 (dsc) [2331 B] 64s Get:2 http://ftpmaster.internal/ubuntu resolute/universe python-gffutils 0.13-3 (tar) [1560 kB] 64s Get:3 http://ftpmaster.internal/ubuntu resolute/universe python-gffutils 0.13-3 (diff) [5460 B] 65s gpgv: Signature made Sat Aug 23 17:09:16 2025 UTC 65s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 65s gpgv: issuer "tchet@debian.org" 65s gpgv: Can't check signature: No public key 65s dpkg-source: warning: cannot verify inline signature for ./python-gffutils_0.13-3.dsc: no acceptable signature found 65s autopkgtest [11:11:10]: testing package python-gffutils version 0.13-3 65s autopkgtest [11:11:10]: build not needed 74s autopkgtest [11:11:19]: test run-unit-test: preparing testbed 75s Reading package lists... 75s Building dependency tree... 75s Reading state information... 75s Solving dependencies... 75s The following NEW packages will be installed: 75s fontconfig-config fonts-urw-base35 libblas3 libcairo2 libdeflate0 75s libfontconfig1 libfontenc1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 75s libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 75s liblcms2-2 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 75s libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 75s python3-argcomplete python3-argh python3-biopython python3-cairo 75s python3-charset-normalizer python3-freetype python3-gffutils 75s python3-iniconfig python3-numpy python3-numpy-dev python3-packaging 75s python3-pil python3-pluggy python3-pyfaidx python3-pytest python3-reportlab 75s python3-rlpycairo sgml-base w3c-sgml-lib x11-common xfonts-encodings 75s xfonts-utils xml-core 75s 0 upgraded, 52 newly installed, 0 to remove and 0 not upgraded. 75s Need to get 29.2 MB of archives. 75s After this operation, 97.7 MB of additional disk space will be used. 75s Get:1 http://ftpmaster.internal/ubuntu resolute/main s390x python3-numpy-dev s390x 1:2.2.4+ds-1ubuntu1 [147 kB] 75s Get:2 http://ftpmaster.internal/ubuntu resolute/main s390x libblas3 s390x 3.12.1-7 [254 kB] 75s Get:3 http://ftpmaster.internal/ubuntu resolute/main s390x libgfortran5 s390x 15.2.0-7ubuntu1 [629 kB] 76s Get:4 http://ftpmaster.internal/ubuntu resolute/main s390x liblapack3 s390x 3.12.1-7 [2983 kB] 77s Get:5 http://ftpmaster.internal/ubuntu resolute/main s390x python3-numpy s390x 1:2.2.4+ds-1ubuntu1 [4399 kB] 77s Get:6 http://ftpmaster.internal/ubuntu resolute/main s390x libfontenc1 s390x 1:1.1.8-1build1 [14.8 kB] 77s Get:7 http://ftpmaster.internal/ubuntu resolute/main s390x libfreetype6 s390x 2.13.3+dfsg-1build1 [430 kB] 77s Get:8 http://ftpmaster.internal/ubuntu resolute/main s390x x11-common all 1:7.7+24ubuntu1 [22.4 kB] 77s Get:9 http://ftpmaster.internal/ubuntu resolute/main s390x xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 77s Get:10 http://ftpmaster.internal/ubuntu resolute/main s390x xfonts-utils s390x 1:7.7+7 [101 kB] 77s Get:11 http://ftpmaster.internal/ubuntu resolute/main s390x fonts-urw-base35 all 20200910-8 [11.0 MB] 78s Get:12 http://ftpmaster.internal/ubuntu resolute/main s390x fontconfig-config s390x 2.15.0-2.3ubuntu1 [38.1 kB] 78s Get:13 http://ftpmaster.internal/ubuntu resolute/main s390x libfontconfig1 s390x 2.15.0-2.3ubuntu1 [149 kB] 78s Get:14 http://ftpmaster.internal/ubuntu resolute/main s390x libpixman-1-0 s390x 0.46.4-1 [217 kB] 78s Get:15 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-render0 s390x 1.17.0-2build1 [16.9 kB] 78s Get:16 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-shm0 s390x 1.17.0-2build1 [5916 B] 78s Get:17 http://ftpmaster.internal/ubuntu resolute/main s390x libxrender1 s390x 1:0.9.12-1 [20.9 kB] 78s Get:18 http://ftpmaster.internal/ubuntu resolute/main s390x libcairo2 s390x 1.18.4-1build1 [580 kB] 78s Get:19 http://ftpmaster.internal/ubuntu resolute/main s390x libdeflate0 s390x 1.23-2 [46.0 kB] 78s Get:20 http://ftpmaster.internal/ubuntu resolute/main s390x libgomp1 s390x 15.2.0-7ubuntu1 [154 kB] 78s Get:21 http://ftpmaster.internal/ubuntu resolute/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 78s Get:22 http://ftpmaster.internal/ubuntu resolute/main s390x libharfbuzz0b s390x 12.1.0-1 [576 kB] 78s Get:23 http://ftpmaster.internal/ubuntu resolute/main s390x libimagequant0 s390x 2.18.0-1build1 [43.3 kB] 78s Get:24 http://ftpmaster.internal/ubuntu resolute/main s390x libjpeg-turbo8 s390x 2.1.5-4ubuntu2 [147 kB] 78s Get:25 http://ftpmaster.internal/ubuntu resolute/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 78s Get:26 http://ftpmaster.internal/ubuntu resolute/main s390x liblcms2-2 s390x 2.16-2 [175 kB] 78s Get:27 http://ftpmaster.internal/ubuntu resolute/main s390x libraqm0 s390x 0.10.3-1 [15.6 kB] 78s Get:28 http://ftpmaster.internal/ubuntu resolute/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 78s Get:29 http://ftpmaster.internal/ubuntu resolute/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 78s Get:30 http://ftpmaster.internal/ubuntu resolute/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 78s Get:31 http://ftpmaster.internal/ubuntu resolute/main s390x libtiff6 s390x 4.7.0-3ubuntu3 [222 kB] 78s Get:32 http://ftpmaster.internal/ubuntu resolute/main s390x libwebpdemux2 s390x 1.5.0-0.1 [12.6 kB] 79s Get:33 http://ftpmaster.internal/ubuntu resolute/main s390x libwebpmux3 s390x 1.5.0-0.1 [25.8 kB] 79s Get:34 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-argcomplete all 3.6.2-1 [35.8 kB] 79s Get:35 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-charset-normalizer s390x 3.4.2-1 [129 kB] 79s Get:36 http://ftpmaster.internal/ubuntu resolute/main s390x libopenjp2-7 s390x 2.5.3-2.1 [207 kB] 79s Get:37 http://ftpmaster.internal/ubuntu resolute/main s390x python3-pil s390x 11.3.0-1ubuntu2 [542 kB] 79s Get:38 http://ftpmaster.internal/ubuntu resolute/main s390x python3-cairo s390x 1.27.0-2build1 [140 kB] 79s Get:39 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-freetype all 2.5.1-2 [92.2 kB] 79s Get:40 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-rlpycairo all 0.3.0-4 [9332 B] 79s Get:41 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-reportlab all 4.4.4-2 [1147 kB] 79s Get:42 http://ftpmaster.internal/ubuntu resolute/main s390x sgml-base all 1.31+nmu1 [11.0 kB] 79s Get:43 http://ftpmaster.internal/ubuntu resolute/main s390x xml-core all 0.19 [20.3 kB] 79s Get:44 http://ftpmaster.internal/ubuntu resolute/universe s390x w3c-sgml-lib all 1.3-3 [280 kB] 79s Get:45 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-biopython s390x 1.85+dfsg-4 [1745 kB] 79s Get:46 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-argh all 0.31.3-1 [27.0 kB] 79s Get:47 http://ftpmaster.internal/ubuntu resolute/main s390x python3-packaging all 25.0-1 [52.8 kB] 79s Get:48 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pyfaidx all 0.8.1.3-2 [29.7 kB] 79s Get:49 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-gffutils all 0.13-3 [1080 kB] 79s Get:50 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-iniconfig all 2.1.0-1 [6840 B] 79s Get:51 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pluggy all 1.6.0-1 [21.0 kB] 79s Get:52 http://ftpmaster.internal/ubuntu resolute-proposed/universe s390x python3-pytest all 8.4.2-1 [268 kB] 79s Fetched 29.2 MB in 4s (7126 kB/s) 79s Selecting previously unselected package python3-numpy-dev:s390x. 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56953 files and directories currently installed.) 79s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_s390x.deb ... 79s Unpacking python3-numpy-dev:s390x (1:2.2.4+ds-1ubuntu1) ... 79s Selecting previously unselected package libblas3:s390x. 79s Preparing to unpack .../01-libblas3_3.12.1-7_s390x.deb ... 79s Unpacking libblas3:s390x (3.12.1-7) ... 79s Selecting previously unselected package libgfortran5:s390x. 79s Preparing to unpack .../02-libgfortran5_15.2.0-7ubuntu1_s390x.deb ... 79s Unpacking libgfortran5:s390x (15.2.0-7ubuntu1) ... 79s Selecting previously unselected package liblapack3:s390x. 79s Preparing to unpack .../03-liblapack3_3.12.1-7_s390x.deb ... 79s Unpacking liblapack3:s390x (3.12.1-7) ... 79s Selecting previously unselected package python3-numpy. 79s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_s390x.deb ... 79s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 79s Selecting previously unselected package libfontenc1:s390x. 79s Preparing to unpack .../05-libfontenc1_1%3a1.1.8-1build1_s390x.deb ... 79s Unpacking libfontenc1:s390x (1:1.1.8-1build1) ... 79s Selecting previously unselected package libfreetype6:s390x. 79s Preparing to unpack .../06-libfreetype6_2.13.3+dfsg-1build1_s390x.deb ... 79s Unpacking libfreetype6:s390x (2.13.3+dfsg-1build1) ... 79s Selecting previously unselected package x11-common. 79s Preparing to unpack .../07-x11-common_1%3a7.7+24ubuntu1_all.deb ... 79s Unpacking x11-common (1:7.7+24ubuntu1) ... 79s Selecting previously unselected package xfonts-encodings. 79s Preparing to unpack .../08-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 79s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 79s Selecting previously unselected package xfonts-utils. 79s Preparing to unpack .../09-xfonts-utils_1%3a7.7+7_s390x.deb ... 79s Unpacking xfonts-utils (1:7.7+7) ... 79s Selecting previously unselected package fonts-urw-base35. 79s Preparing to unpack .../10-fonts-urw-base35_20200910-8_all.deb ... 80s Unpacking fonts-urw-base35 (20200910-8) ... 80s Selecting previously unselected package fontconfig-config. 80s Preparing to unpack .../11-fontconfig-config_2.15.0-2.3ubuntu1_s390x.deb ... 80s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 80s Selecting previously unselected package libfontconfig1:s390x. 80s Preparing to unpack .../12-libfontconfig1_2.15.0-2.3ubuntu1_s390x.deb ... 80s Unpacking libfontconfig1:s390x (2.15.0-2.3ubuntu1) ... 80s Selecting previously unselected package libpixman-1-0:s390x. 80s Preparing to unpack .../13-libpixman-1-0_0.46.4-1_s390x.deb ... 80s Unpacking libpixman-1-0:s390x (0.46.4-1) ... 80s Selecting previously unselected package libxcb-render0:s390x. 80s Preparing to unpack .../14-libxcb-render0_1.17.0-2build1_s390x.deb ... 80s Unpacking libxcb-render0:s390x (1.17.0-2build1) ... 80s Selecting previously unselected package libxcb-shm0:s390x. 80s Preparing to unpack .../15-libxcb-shm0_1.17.0-2build1_s390x.deb ... 80s Unpacking libxcb-shm0:s390x (1.17.0-2build1) ... 80s Selecting previously unselected package libxrender1:s390x. 80s Preparing to unpack .../16-libxrender1_1%3a0.9.12-1_s390x.deb ... 80s Unpacking libxrender1:s390x (1:0.9.12-1) ... 80s Selecting previously unselected package libcairo2:s390x. 80s Preparing to unpack .../17-libcairo2_1.18.4-1build1_s390x.deb ... 80s Unpacking libcairo2:s390x (1.18.4-1build1) ... 80s Selecting previously unselected package libdeflate0:s390x. 80s Preparing to unpack .../18-libdeflate0_1.23-2_s390x.deb ... 80s Unpacking libdeflate0:s390x (1.23-2) ... 80s Selecting previously unselected package libgomp1:s390x. 80s Preparing to unpack .../19-libgomp1_15.2.0-7ubuntu1_s390x.deb ... 80s Unpacking libgomp1:s390x (15.2.0-7ubuntu1) ... 80s Selecting previously unselected package libgraphite2-3:s390x. 80s Preparing to unpack .../20-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ... 80s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 80s Selecting previously unselected package libharfbuzz0b:s390x. 80s Preparing to unpack .../21-libharfbuzz0b_12.1.0-1_s390x.deb ... 80s Unpacking libharfbuzz0b:s390x (12.1.0-1) ... 80s Selecting previously unselected package libimagequant0:s390x. 80s Preparing to unpack .../22-libimagequant0_2.18.0-1build1_s390x.deb ... 80s Unpacking libimagequant0:s390x (2.18.0-1build1) ... 80s Selecting previously unselected package libjpeg-turbo8:s390x. 80s Preparing to unpack .../23-libjpeg-turbo8_2.1.5-4ubuntu2_s390x.deb ... 80s Unpacking libjpeg-turbo8:s390x (2.1.5-4ubuntu2) ... 80s Selecting previously unselected package libjpeg8:s390x. 80s Preparing to unpack .../24-libjpeg8_8c-2ubuntu11_s390x.deb ... 80s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 80s Selecting previously unselected package liblcms2-2:s390x. 80s Preparing to unpack .../25-liblcms2-2_2.16-2_s390x.deb ... 80s Unpacking liblcms2-2:s390x (2.16-2) ... 80s Selecting previously unselected package libraqm0:s390x. 80s Preparing to unpack .../26-libraqm0_0.10.3-1_s390x.deb ... 80s Unpacking libraqm0:s390x (0.10.3-1) ... 80s Selecting previously unselected package libsharpyuv0:s390x. 80s Preparing to unpack .../27-libsharpyuv0_1.5.0-0.1_s390x.deb ... 80s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ... 80s Selecting previously unselected package libjbig0:s390x. 80s Preparing to unpack .../28-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 80s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 80s Selecting previously unselected package libwebp7:s390x. 80s Preparing to unpack .../29-libwebp7_1.5.0-0.1_s390x.deb ... 80s Unpacking libwebp7:s390x (1.5.0-0.1) ... 80s Selecting previously unselected package libtiff6:s390x. 80s Preparing to unpack .../30-libtiff6_4.7.0-3ubuntu3_s390x.deb ... 80s Unpacking libtiff6:s390x (4.7.0-3ubuntu3) ... 80s Selecting previously unselected package libwebpdemux2:s390x. 80s Preparing to unpack .../31-libwebpdemux2_1.5.0-0.1_s390x.deb ... 80s Unpacking libwebpdemux2:s390x (1.5.0-0.1) ... 80s Selecting previously unselected package libwebpmux3:s390x. 80s Preparing to unpack .../32-libwebpmux3_1.5.0-0.1_s390x.deb ... 80s Unpacking libwebpmux3:s390x (1.5.0-0.1) ... 80s Selecting previously unselected package python3-argcomplete. 80s Preparing to unpack .../33-python3-argcomplete_3.6.2-1_all.deb ... 80s Unpacking python3-argcomplete (3.6.2-1) ... 80s Selecting previously unselected package python3-charset-normalizer. 80s Preparing to unpack .../34-python3-charset-normalizer_3.4.2-1_s390x.deb ... 80s Unpacking 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Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 80s Setting up liblcms2-2:s390x (2.16-2) ... 80s Setting up python3-iniconfig (2.1.0-1) ... 80s Setting up libpixman-1-0:s390x (0.46.4-1) ... 80s Setting up python3-argh (0.31.3-1) ... 80s Setting up libsharpyuv0:s390x (1.5.0-0.1) ... 80s Setting up libxrender1:s390x (1:0.9.12-1) ... 80s Setting up libxcb-render0:s390x (1.17.0-2build1) ... 80s Setting up python3-charset-normalizer (3.4.2-1) ... 81s Setting up x11-common (1:7.7+24ubuntu1) ... 81s Setting up libdeflate0:s390x (1.23-2) ... 81s Setting up libxcb-shm0:s390x (1.17.0-2build1) ... 81s Setting up libgomp1:s390x (15.2.0-7ubuntu1) ... 81s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 81s Setting up libfontenc1:s390x (1:1.1.8-1build1) ... 81s Setting up libblas3:s390x (3.12.1-7) ... 81s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 81s Setting up python3-packaging (25.0-1) ... 81s Setting up libfreetype6:s390x (2.13.3+dfsg-1build1) ... 81s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 81s Setting up libimagequant0:s390x (2.18.0-1build1) ... 81s Setting up python3-numpy-dev:s390x (1:2.2.4+ds-1ubuntu1) ... 81s Setting up libjpeg-turbo8:s390x (2.1.5-4ubuntu2) ... 81s Setting up libgfortran5:s390x (15.2.0-7ubuntu1) ... 81s Setting up python3-pluggy (1.6.0-1) ... 81s Setting up libwebp7:s390x (1.5.0-0.1) ... 81s Setting up libopenjp2-7:s390x (2.5.3-2.1) ... 81s Setting up libharfbuzz0b:s390x (12.1.0-1) ... 81s Setting up sgml-base (1.31+nmu1) ... 81s Setting up python3-argcomplete (3.6.2-1) ... 81s Setting up libwebpmux3:s390x (1.5.0-0.1) ... 81s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 81s Setting up python3-pyfaidx (0.8.1.3-2) ... 81s Setting up liblapack3:s390x (3.12.1-7) ... 81s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 81s Setting up python3-pytest (8.4.2-1) ... 81s Setting up libwebpdemux2:s390x (1.5.0-0.1) ... 81s Setting up python3-freetype (2.5.1-2) ... 82s Setting up xfonts-utils (1:7.7+7) ... 82s Setting up libraqm0:s390x (0.10.3-1) ... 82s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 83s Setting up libtiff6:s390x (4.7.0-3ubuntu3) ... 83s Setting up xml-core (0.19) ... 83s Setting up fonts-urw-base35 (20200910-8) ... 83s Setting up python3-pil:s390x (11.3.0-1ubuntu2) ... 83s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 83s Setting up libfontconfig1:s390x (2.15.0-2.3ubuntu1) ... 83s Setting up libcairo2:s390x (1.18.4-1build1) ... 83s Setting up python3-cairo (1.27.0-2build1) ... 84s Setting up python3-rlpycairo (0.3.0-4) ... 84s Setting up python3-reportlab (4.4.4-2) ... 84s Processing triggers for libc-bin (2.42-0ubuntu3) ... 84s Processing triggers for man-db (2.13.1-1) ... 85s Processing triggers for sgml-base (1.31+nmu1) ... 85s Setting up w3c-sgml-lib (1.3-3) ... 106s Setting up python3-biopython (1.85+dfsg-4) ... 107s Setting up python3-gffutils (0.13-3) ... 108s autopkgtest [11:11:53]: test run-unit-test: [----------------------- 108s + pkg=python-gffutils 108s + [ /tmp/autopkgtest.xrfgK3/autopkgtest_tmp = ] 108s + cd /tmp/autopkgtest.xrfgK3/autopkgtest_tmp 108s + export HOME=/tmp/autopkgtest.xrfgK3/autopkgtest_tmp 108s + cp -r /usr/lib/python3/dist-packages/gffutils/test ./ 108s + pytest --doctest-modules -m not slow test 109s ============================= test session starts ============================== 109s platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 109s rootdir: /tmp/autopkgtest.xrfgK3/autopkgtest_tmp 109s plugins: typeguard-4.4.2 109s collected 110 items 109s 109s test/feature_test.py ........... [ 10%] 109s test/helpers_test.py .. [ 11%] 109s test/parser_test.py .................. [ 28%] 110s test/test_1.py ......................s........... [ 59%] 110s test/test_biopython_integration.py . [ 60%] 110s test/test_cli.py . [ 60%] 110s test/test_issues.py ........................ [ 82%] 110s test/test_iterators.py .... [ 86%] 110s test/test_merge.py ......... [ 94%] 110s test/test_merge_all.py ...... [100%] 110s 110s =============================== warnings summary =============================== 110s test/performance_evaluation.py:190 110s /tmp/autopkgtest.xrfgK3/autopkgtest_tmp/test/performance_evaluation.py:190: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 110s @pytest.mark.slow 110s 110s test/performance_evaluation.py:208 110s /tmp/autopkgtest.xrfgK3/autopkgtest_tmp/test/performance_evaluation.py:208: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 110s @pytest.mark.slow 110s 110s test/parser_test.py::test_parser_from_string 110s /usr/lib/python3/dist-packages/_pytest/python.py:161: PytestReturnNotNoneWarning: Test functions should return None, but test/parser_test.py::test_parser_from_string returned . 110s Did you mean to use `assert` instead of `return`? 110s See https://docs.pytest.org/en/stable/how-to/assert.html#return-not-none for more information. 110s warnings.warn( 110s 110s test/parser_test.py::test_inconsistent_dialect 110s test/test_1.py::test_disable_infer 110s test/test_issues.py::test_pr_172 110s /usr/lib/python3/dist-packages/gffutils/create.py:770: UserWarning: It appears you have a gene feature in your GTF file. You may want to use the `disable_infer_genes=True` option to speed up database creation 110s warnings.warn( 110s 110s test/test_1.py::test_disable_infer 110s /usr/lib/python3/dist-packages/gffutils/create.py:763: UserWarning: It appears you have a transcript feature in your GTF file. You may want to use the `disable_infer_transcripts=True` option to speed up database creation 110s warnings.warn( 110s 110s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 110s ================== 109 passed, 1 skipped, 7 warnings in 1.49s ================== 111s autopkgtest [11:11:56]: test run-unit-test: -----------------------] 111s run-unit-test PASS 111s autopkgtest [11:11:56]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 111s autopkgtest [11:11:56]: @@@@@@@@@@@@@@@@@@@@ summary 111s run-unit-test PASS