0s autopkgtest [20:26:15]: starting date and time: 2025-10-29 20:26:15+0000 0s autopkgtest [20:26:15]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [20:26:15]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0rxagjwu/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:netcdf4-python --apt-upgrade python-ase --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=netcdf4-python/1.7.3-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-13.secgroup --name adt-resolute-s390x-python-ase-20251029-202615-juju-7f2275-prod-proposed-migration-environment-2-bbec1e27-bfa2-4623-9631-0e78e213840f --image adt/ubuntu-resolute-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-s390x-python-ase-20251029-202615-juju-7f2275-prod-proposed-migration-environment-2-bbec1e27-bfa2-4623-9631-0e78e213840f from image adt/ubuntu-resolute-s390x-server-20251029.img (UUID 9b44f86f-e777-40dd-9c62-e99dbe461ec3)... 41s autopkgtest [20:26:56]: testbed dpkg architecture: s390x 41s autopkgtest [20:26:56]: testbed apt version: 3.1.11 42s autopkgtest [20:26:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup 42s autopkgtest [20:26:57]: testbed release detected to be: None 43s autopkgtest [20:26:58]: updating testbed package index (apt update) 43s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 43s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 43s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 43s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 43s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [70.5 kB] 43s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [3669 kB] 44s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [206 kB] 44s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5856 B] 44s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x Packages [255 kB] 44s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted s390x Packages [940 B] 44s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe s390x Packages [2381 kB] 44s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse s390x Packages [21.0 kB] 45s Fetched 6697 kB in 2s (3578 kB/s) 45s Reading package lists... 46s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 46s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 46s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 46s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 47s Reading package lists... 47s Reading package lists... 47s Building dependency tree... 47s Reading state information... 47s Calculating upgrade... 47s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 47s autopkgtest [20:27:02]: upgrading testbed (apt dist-upgrade and autopurge) 48s Reading package lists... 48s Building dependency tree... 48s Reading state information... 48s Calculating upgrade... 48s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 48s Reading package lists... 48s Building dependency tree... 48s Reading state information... 48s Solving dependencies... 48s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 51s autopkgtest [20:27:06]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP Mon Sep 22 08:56:47 UTC 2025 51s autopkgtest [20:27:06]: @@@@@@@@@@@@@@@@@@@@ apt-source python-ase 54s Get:1 http://ftpmaster.internal/ubuntu resolute/universe python-ase 3.24.0-1 (dsc) [2638 B] 54s Get:2 http://ftpmaster.internal/ubuntu resolute/universe python-ase 3.24.0-1 (tar) [2597 kB] 54s Get:3 http://ftpmaster.internal/ubuntu resolute/universe python-ase 3.24.0-1 (diff) [10.3 kB] 54s gpgv: Signature made Thu Mar 6 03:39:08 2025 UTC 54s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 54s gpgv: Can't check signature: No public key 54s dpkg-source: warning: cannot verify inline signature for ./python-ase_3.24.0-1.dsc: no acceptable signature found 55s autopkgtest [20:27:10]: testing package python-ase version 3.24.0-1 55s autopkgtest [20:27:10]: build not needed 56s autopkgtest [20:27:11]: test command1: preparing testbed 56s Reading package lists... 56s Building dependency tree... 56s Reading state information... 56s Solving dependencies... 56s The following NEW packages will be installed: 56s ase blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 56s fonts-font-awesome fonts-glyphicons-halflings fonts-lyx libaec0 libblas3 56s libdeflate0 libfontconfig1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 56s libharfbuzz0b libhdf5-310 libhdf5-hl-310 libimagequant0 libjbig0 56s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery libjs-jquery-ui 56s liblapack3 liblcms2-2 libnetcdf22 libopenjp2-7 libqhull-r8.0 libraqm0 56s libsharpyuv0 libsymspg2 libsz2 libtcl8.6 libtiff6 libtk8.6 libwebp7 56s libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 libzopfli1 56s python-matplotlib-data python3-all python3-ase python3-brotli python3-cftime 56s python3-contourpy python3-cycler python3-dateutil python3-decorator 56s python3-fonttools python3-fs python3-iniconfig python3-kiwisolver 56s python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-netcdf4 56s python3-numpy python3-numpy-dev python3-packaging python3-pil 56s python3-pil.imagetk python3-platformdirs python3-pluggy python3-pycodcif 56s python3-pytest python3-pytest-mock python3-scipy python3-spglib 56s python3-sympy python3-tk python3-ufolib2 python3-zopfli python3.13-tk 56s python3.14-tk tk8.6-blt2.5 unicode-data x11-common 57s 0 upgraded, 85 newly installed, 0 to remove and 0 not upgraded. 57s Need to get 84.4 MB of archives. 57s After this operation, 368 MB of additional disk space will be used. 57s Get:1 http://ftpmaster.internal/ubuntu resolute/main s390x python3-numpy-dev s390x 1:2.2.4+ds-1ubuntu1 [147 kB] 57s Get:2 http://ftpmaster.internal/ubuntu resolute/main s390x libblas3 s390x 3.12.1-6build1 [245 kB] 57s Get:3 http://ftpmaster.internal/ubuntu resolute/main s390x libgfortran5 s390x 15.2.0-5ubuntu1 [629 kB] 57s Get:4 http://ftpmaster.internal/ubuntu resolute/main s390x liblapack3 s390x 3.12.1-6build1 [2910 kB] 58s Get:5 http://ftpmaster.internal/ubuntu resolute/main s390x python3-numpy s390x 1:2.2.4+ds-1ubuntu1 [4399 kB] 58s Get:6 http://ftpmaster.internal/ubuntu resolute/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 58s Get:7 http://ftpmaster.internal/ubuntu resolute/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 58s Get:8 http://ftpmaster.internal/ubuntu resolute/universe s390x libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 58s Get:9 http://ftpmaster.internal/ubuntu resolute/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 58s Get:10 http://ftpmaster.internal/ubuntu resolute/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 58s Get:11 http://ftpmaster.internal/ubuntu resolute/main s390x python3-decorator all 5.2.1-2 [28.1 kB] 58s Get:12 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-scipy s390x 1.15.3-1ubuntu1 [21.3 MB] 60s Get:13 http://ftpmaster.internal/ubuntu resolute/universe s390x libsymspg2 s390x 2.6.0-3build1 [214 kB] 60s Get:14 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-spglib s390x 2.6.0-3build1 [33.4 kB] 60s Get:15 http://ftpmaster.internal/ubuntu resolute/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 60s Get:16 http://ftpmaster.internal/ubuntu resolute/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 60s Get:17 http://ftpmaster.internal/ubuntu resolute/universe s390x fonts-lyx all 2.4.4-1 [171 kB] 60s Get:18 http://ftpmaster.internal/ubuntu resolute/universe s390x python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 60s Get:19 http://ftpmaster.internal/ubuntu resolute/main s390x python3-dateutil all 2.9.0-4 [80.3 kB] 60s Get:20 http://ftpmaster.internal/ubuntu resolute/main s390x libfreetype6 s390x 2.13.3+dfsg-1build1 [430 kB] 60s Get:21 http://ftpmaster.internal/ubuntu resolute/main s390x libgomp1 s390x 15.2.0-5ubuntu1 [154 kB] 60s Get:22 http://ftpmaster.internal/ubuntu resolute/main s390x libimagequant0 s390x 2.18.0-1build1 [43.3 kB] 60s Get:23 http://ftpmaster.internal/ubuntu resolute/main s390x libjpeg-turbo8 s390x 2.1.5-4ubuntu2 [147 kB] 60s Get:24 http://ftpmaster.internal/ubuntu resolute/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 60s Get:25 http://ftpmaster.internal/ubuntu resolute/main s390x liblcms2-2 s390x 2.16-2 [175 kB] 60s Get:26 http://ftpmaster.internal/ubuntu resolute/main s390x libopenjp2-7 s390x 2.5.3-2.1 [207 kB] 60s Get:27 http://ftpmaster.internal/ubuntu resolute/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 60s Get:28 http://ftpmaster.internal/ubuntu resolute/main s390x libharfbuzz0b s390x 12.1.0-1 [576 kB] 60s Get:29 http://ftpmaster.internal/ubuntu resolute/main s390x libraqm0 s390x 0.10.3-1 [15.6 kB] 60s Get:30 http://ftpmaster.internal/ubuntu resolute/main s390x libdeflate0 s390x 1.23-2 [46.0 kB] 60s Get:31 http://ftpmaster.internal/ubuntu resolute/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 60s Get:32 http://ftpmaster.internal/ubuntu resolute/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 60s Get:33 http://ftpmaster.internal/ubuntu resolute/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 60s Get:34 http://ftpmaster.internal/ubuntu resolute/main s390x libtiff6 s390x 4.7.0-3ubuntu3 [222 kB] 60s Get:35 http://ftpmaster.internal/ubuntu resolute/main s390x libwebpdemux2 s390x 1.5.0-0.1 [12.6 kB] 60s Get:36 http://ftpmaster.internal/ubuntu resolute/main s390x libwebpmux3 s390x 1.5.0-0.1 [25.8 kB] 60s Get:37 http://ftpmaster.internal/ubuntu resolute/main s390x python3-pil s390x 11.3.0-1ubuntu2 [542 kB] 60s Get:38 http://ftpmaster.internal/ubuntu resolute/main s390x libtcl8.6 s390x 8.6.17+dfsg-1 [1034 kB] 60s Get:39 http://ftpmaster.internal/ubuntu resolute/main s390x fontconfig-config s390x 2.15.0-2.3ubuntu1 [38.1 kB] 60s Get:40 http://ftpmaster.internal/ubuntu resolute/main s390x libfontconfig1 s390x 2.15.0-2.3ubuntu1 [149 kB] 60s Get:41 http://ftpmaster.internal/ubuntu resolute/main s390x libxrender1 s390x 1:0.9.12-1 [20.9 kB] 60s Get:42 http://ftpmaster.internal/ubuntu resolute/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 60s Get:43 http://ftpmaster.internal/ubuntu resolute/main s390x x11-common all 1:7.7+24ubuntu1 [22.4 kB] 60s Get:44 http://ftpmaster.internal/ubuntu resolute/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 60s Get:45 http://ftpmaster.internal/ubuntu resolute/main s390x libtk8.6 s390x 8.6.17-1 [828 kB] 60s Get:46 http://ftpmaster.internal/ubuntu resolute/main s390x python3.14-tk s390x 3.14.0-4 [109 kB] 60s Get:47 http://ftpmaster.internal/ubuntu resolute/main s390x python3.13-tk s390x 3.13.9-1 [109 kB] 60s Get:48 http://ftpmaster.internal/ubuntu resolute/main s390x tk8.6-blt2.5 s390x 2.5.3+dfsg-8 [657 kB] 60s Get:49 http://ftpmaster.internal/ubuntu resolute/main s390x blt s390x 2.5.3+dfsg-8 [4826 B] 60s Get:50 http://ftpmaster.internal/ubuntu resolute/main s390x python3-tk s390x 3.13.9-1 [8948 B] 60s Get:51 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pil.imagetk s390x 11.3.0-1ubuntu2 [9922 B] 60s Get:52 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-contourpy s390x 1.3.1-1build2 [266 kB] 60s Get:53 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-cycler all 0.12.1-2 [9850 B] 60s Get:54 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-brotli s390x 1.1.0-2build6 [386 kB] 60s Get:55 http://ftpmaster.internal/ubuntu resolute/main s390x python3-platformdirs all 4.3.7-1 [16.9 kB] 60s Get:56 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-fs all 2.4.16-7 [90.8 kB] 60s Get:57 http://ftpmaster.internal/ubuntu resolute/main s390x libxslt1.1 s390x 1.1.43-0.3 [163 kB] 60s Get:58 http://ftpmaster.internal/ubuntu resolute/main s390x python3-lxml s390x 6.0.1-1build1 [2480 kB] 60s Get:59 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-lz4 s390x 4.4.4+dfsg-3 [27.4 kB] 60s Get:60 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-mpmath all 1.3.0-1 [425 kB] 60s Get:61 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-sympy all 1.13.3-5 [4229 kB] 61s Get:62 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 61s Get:63 http://ftpmaster.internal/ubuntu resolute/main s390x python3-all s390x 3.13.7-1 [886 B] 61s Get:64 http://ftpmaster.internal/ubuntu resolute/universe s390x libzopfli1 s390x 1.0.3-3 [124 kB] 61s Get:65 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-zopfli s390x 0.2.3.post1-1 [10.9 kB] 61s Get:66 http://ftpmaster.internal/ubuntu resolute/universe s390x unicode-data all 16.0.0-1 [9513 kB] 61s Get:67 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-fonttools s390x 4.57.0-2build1 [1773 kB] 61s Get:68 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-kiwisolver s390x 1.4.7-3build2 [63.7 kB] 61s Get:69 http://ftpmaster.internal/ubuntu resolute/main s390x python3-packaging all 25.0-1 [52.8 kB] 61s Get:70 http://ftpmaster.internal/ubuntu resolute/universe s390x libqhull-r8.0 s390x 2020.2-6build1 [199 kB] 61s Get:71 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-matplotlib s390x 3.10.7+dfsg1-1 [17.2 MB] 61s Get:72 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-ase all 3.24.0-1 [1787 kB] 62s Get:73 http://ftpmaster.internal/ubuntu resolute/universe s390x ase all 3.24.0-1 [31.1 kB] 62s Get:74 http://ftpmaster.internal/ubuntu resolute/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 62s Get:75 http://ftpmaster.internal/ubuntu resolute/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 62s Get:76 http://ftpmaster.internal/ubuntu resolute/universe s390x libhdf5-310 s390x 1.14.5+repack-3build1 [1477 kB] 62s Get:77 http://ftpmaster.internal/ubuntu resolute/universe s390x libhdf5-hl-310 s390x 1.14.5+repack-3build1 [61.1 kB] 62s Get:78 http://ftpmaster.internal/ubuntu resolute/universe s390x libnetcdf22 s390x 1:4.9.3-1build1 [583 kB] 62s Get:79 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-cftime s390x 1.6.4-2build1 [369 kB] 62s Get:80 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-iniconfig all 1.1.1-2 [6024 B] 62s Get:81 http://ftpmaster.internal/ubuntu resolute-proposed/universe s390x python3-netcdf4 s390x 1.7.3-1 [954 kB] 62s Get:82 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pluggy all 1.6.0-1 [21.0 kB] 62s Get:83 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pycodcif s390x 3.11.0+dfsg-1build1 [77.6 kB] 62s Get:84 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pytest all 8.3.5-2 [252 kB] 62s Get:85 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pytest-mock all 3.14.0-3 [11.8 kB] 62s Fetched 84.4 MB in 5s (16.2 MB/s) 62s Selecting previously unselected package python3-numpy-dev:s390x. 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56950 files and directories currently installed.) 62s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_s390x.deb ... 62s Unpacking python3-numpy-dev:s390x (1:2.2.4+ds-1ubuntu1) ... 62s Selecting previously unselected package libblas3:s390x. 62s Preparing to unpack .../01-libblas3_3.12.1-6build1_s390x.deb ... 62s Unpacking libblas3:s390x (3.12.1-6build1) ... 62s Selecting previously unselected package libgfortran5:s390x. 62s Preparing to unpack .../02-libgfortran5_15.2.0-5ubuntu1_s390x.deb ... 62s Unpacking libgfortran5:s390x (15.2.0-5ubuntu1) ... 62s Selecting previously unselected package liblapack3:s390x. 62s Preparing to unpack .../03-liblapack3_3.12.1-6build1_s390x.deb ... 62s Unpacking liblapack3:s390x (3.12.1-6build1) ... 62s Selecting previously unselected package python3-numpy. 62s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_s390x.deb ... 62s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 62s Selecting previously unselected package fonts-font-awesome. 62s Preparing to unpack .../05-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 62s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 62s Selecting previously unselected package fonts-glyphicons-halflings. 62s Preparing to unpack .../06-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 62s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 62s Selecting previously unselected package libjs-bootstrap. 62s Preparing to unpack .../07-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 62s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 62s Selecting previously unselected package libjs-jquery. 62s Preparing to unpack .../08-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 62s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 62s Selecting previously unselected package libjs-jquery-ui. 62s Preparing to unpack .../09-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 62s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 62s Selecting previously unselected package python3-decorator. 62s Preparing to unpack .../10-python3-decorator_5.2.1-2_all.deb ... 62s Unpacking python3-decorator (5.2.1-2) ... 62s Selecting previously unselected package python3-scipy. 62s Preparing to unpack .../11-python3-scipy_1.15.3-1ubuntu1_s390x.deb ... 62s Unpacking python3-scipy (1.15.3-1ubuntu1) ... 63s Selecting previously unselected package libsymspg2:s390x. 63s Preparing to unpack .../12-libsymspg2_2.6.0-3build1_s390x.deb ... 63s Unpacking libsymspg2:s390x (2.6.0-3build1) ... 63s Selecting previously unselected package python3-spglib. 63s Preparing to unpack .../13-python3-spglib_2.6.0-3build1_s390x.deb ... 63s Unpacking python3-spglib (2.6.0-3build1) ... 63s Selecting previously unselected package fonts-dejavu-mono. 63s Preparing to unpack .../14-fonts-dejavu-mono_2.37-8_all.deb ... 63s Unpacking fonts-dejavu-mono (2.37-8) ... 63s Selecting previously unselected package fonts-dejavu-core. 63s Preparing to unpack .../15-fonts-dejavu-core_2.37-8_all.deb ... 63s Unpacking fonts-dejavu-core (2.37-8) ... 63s Selecting previously unselected package fonts-lyx. 63s Preparing to unpack .../16-fonts-lyx_2.4.4-1_all.deb ... 63s Unpacking fonts-lyx (2.4.4-1) ... 63s Selecting previously unselected package python-matplotlib-data. 63s Preparing to unpack .../17-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 63s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 63s Selecting previously unselected package python3-dateutil. 63s Preparing to unpack .../18-python3-dateutil_2.9.0-4_all.deb ... 63s Unpacking python3-dateutil (2.9.0-4) ... 63s Selecting previously unselected package libfreetype6:s390x. 63s Preparing to unpack .../19-libfreetype6_2.13.3+dfsg-1build1_s390x.deb ... 63s Unpacking libfreetype6:s390x (2.13.3+dfsg-1build1) ... 63s Selecting previously unselected package libgomp1:s390x. 63s Preparing to unpack .../20-libgomp1_15.2.0-5ubuntu1_s390x.deb ... 63s Unpacking libgomp1:s390x (15.2.0-5ubuntu1) ... 63s Selecting previously unselected package libimagequant0:s390x. 63s Preparing to unpack .../21-libimagequant0_2.18.0-1build1_s390x.deb ... 63s Unpacking libimagequant0:s390x (2.18.0-1build1) ... 63s Selecting previously unselected package libjpeg-turbo8:s390x. 63s Preparing to unpack .../22-libjpeg-turbo8_2.1.5-4ubuntu2_s390x.deb ... 63s Unpacking libjpeg-turbo8:s390x (2.1.5-4ubuntu2) ... 63s Selecting previously unselected package libjpeg8:s390x. 63s Preparing to unpack .../23-libjpeg8_8c-2ubuntu11_s390x.deb ... 63s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 63s Selecting previously unselected package liblcms2-2:s390x. 63s Preparing to unpack .../24-liblcms2-2_2.16-2_s390x.deb ... 63s Unpacking liblcms2-2:s390x (2.16-2) ... 63s Selecting previously unselected package libopenjp2-7:s390x. 63s Preparing to unpack .../25-libopenjp2-7_2.5.3-2.1_s390x.deb ... 63s Unpacking libopenjp2-7:s390x (2.5.3-2.1) ... 63s Selecting previously unselected package libgraphite2-3:s390x. 63s Preparing to unpack .../26-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ... 63s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 63s Selecting previously unselected package libharfbuzz0b:s390x. 63s Preparing to unpack .../27-libharfbuzz0b_12.1.0-1_s390x.deb ... 63s Unpacking libharfbuzz0b:s390x (12.1.0-1) ... 63s Selecting previously unselected package libraqm0:s390x. 63s Preparing to unpack .../28-libraqm0_0.10.3-1_s390x.deb ... 63s Unpacking libraqm0:s390x (0.10.3-1) ... 63s Selecting previously unselected package libdeflate0:s390x. 63s Preparing to unpack .../29-libdeflate0_1.23-2_s390x.deb ... 63s Unpacking libdeflate0:s390x (1.23-2) ... 63s Selecting previously unselected package libjbig0:s390x. 63s Preparing to unpack .../30-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 63s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 63s Selecting previously unselected package libsharpyuv0:s390x. 63s Preparing to unpack .../31-libsharpyuv0_1.5.0-0.1_s390x.deb ... 63s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ... 63s Selecting previously unselected package libwebp7:s390x. 63s Preparing to unpack .../32-libwebp7_1.5.0-0.1_s390x.deb ... 63s Unpacking libwebp7:s390x (1.5.0-0.1) ... 63s Selecting previously unselected package libtiff6:s390x. 63s Preparing to unpack .../33-libtiff6_4.7.0-3ubuntu3_s390x.deb ... 63s Unpacking libtiff6:s390x (4.7.0-3ubuntu3) ... 63s Selecting previously unselected package libwebpdemux2:s390x. 63s Preparing to unpack .../34-libwebpdemux2_1.5.0-0.1_s390x.deb ... 63s Unpacking libwebpdemux2:s390x (1.5.0-0.1) ... 63s Selecting previously unselected package libwebpmux3:s390x. 63s Preparing to unpack .../35-libwebpmux3_1.5.0-0.1_s390x.deb ... 63s Unpacking libwebpmux3:s390x (1.5.0-0.1) ... 63s Selecting previously unselected package python3-pil:s390x. 63s Preparing to unpack .../36-python3-pil_11.3.0-1ubuntu2_s390x.deb ... 63s Unpacking python3-pil:s390x (11.3.0-1ubuntu2) ... 63s Selecting previously unselected package libtcl8.6:s390x. 63s Preparing to unpack .../37-libtcl8.6_8.6.17+dfsg-1_s390x.deb ... 63s Unpacking libtcl8.6:s390x (8.6.17+dfsg-1) ... 63s Selecting previously unselected package fontconfig-config. 63s Preparing to unpack .../38-fontconfig-config_2.15.0-2.3ubuntu1_s390x.deb ... 63s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 63s Selecting previously unselected package libfontconfig1:s390x. 63s Preparing to unpack .../39-libfontconfig1_2.15.0-2.3ubuntu1_s390x.deb ... 63s Unpacking libfontconfig1:s390x (2.15.0-2.3ubuntu1) ... 63s Selecting previously unselected package libxrender1:s390x. 63s Preparing to unpack .../40-libxrender1_1%3a0.9.12-1_s390x.deb ... 63s Unpacking libxrender1:s390x (1:0.9.12-1) ... 63s Selecting previously unselected package libxft2:s390x. 63s Preparing to unpack .../41-libxft2_2.3.6-1build1_s390x.deb ... 63s Unpacking libxft2:s390x (2.3.6-1build1) ... 63s Selecting previously unselected package x11-common. 63s Preparing to unpack .../42-x11-common_1%3a7.7+24ubuntu1_all.deb ... 63s Unpacking x11-common (1:7.7+24ubuntu1) ... 63s Selecting previously unselected package libxss1:s390x. 63s Preparing to unpack .../43-libxss1_1%3a1.2.3-1build3_s390x.deb ... 63s Unpacking libxss1:s390x (1:1.2.3-1build3) ... 63s Selecting previously unselected package libtk8.6:s390x. 63s Preparing to unpack .../44-libtk8.6_8.6.17-1_s390x.deb ... 63s Unpacking libtk8.6:s390x (8.6.17-1) ... 63s Selecting previously unselected package python3.14-tk. 63s Preparing to unpack .../45-python3.14-tk_3.14.0-4_s390x.deb ... 63s Unpacking python3.14-tk (3.14.0-4) ... 63s Selecting previously unselected package python3.13-tk. 64s Preparing to unpack .../46-python3.13-tk_3.13.9-1_s390x.deb ... 64s Unpacking python3.13-tk (3.13.9-1) ... 64s Selecting previously unselected package tk8.6-blt2.5. 64s Preparing to unpack .../47-tk8.6-blt2.5_2.5.3+dfsg-8_s390x.deb ... 64s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 64s Selecting previously unselected package blt. 64s Preparing to unpack .../48-blt_2.5.3+dfsg-8_s390x.deb ... 64s Unpacking blt (2.5.3+dfsg-8) ... 64s Selecting previously unselected package python3-tk:s390x. 64s Preparing to unpack .../49-python3-tk_3.13.9-1_s390x.deb ... 64s Unpacking python3-tk:s390x (3.13.9-1) ... 64s Selecting previously unselected package python3-pil.imagetk:s390x. 64s Preparing to unpack .../50-python3-pil.imagetk_11.3.0-1ubuntu2_s390x.deb ... 64s Unpacking python3-pil.imagetk:s390x (11.3.0-1ubuntu2) ... 64s Selecting previously unselected package python3-contourpy. 64s Preparing to unpack .../51-python3-contourpy_1.3.1-1build2_s390x.deb ... 64s Unpacking python3-contourpy (1.3.1-1build2) ... 64s Selecting previously unselected package python3-cycler. 64s Preparing to unpack .../52-python3-cycler_0.12.1-2_all.deb ... 64s Unpacking python3-cycler (0.12.1-2) ... 64s Selecting previously unselected package python3-brotli. 64s Preparing to unpack .../53-python3-brotli_1.1.0-2build6_s390x.deb ... 64s Unpacking python3-brotli (1.1.0-2build6) ... 64s Selecting previously unselected package python3-platformdirs. 64s Preparing to unpack .../54-python3-platformdirs_4.3.7-1_all.deb ... 64s Unpacking python3-platformdirs (4.3.7-1) ... 64s Selecting previously unselected package python3-fs. 64s Preparing to unpack .../55-python3-fs_2.4.16-7_all.deb ... 64s Unpacking python3-fs (2.4.16-7) ... 64s Selecting previously unselected package libxslt1.1:s390x. 64s Preparing to unpack .../56-libxslt1.1_1.1.43-0.3_s390x.deb ... 64s Unpacking libxslt1.1:s390x (1.1.43-0.3) ... 64s Selecting previously unselected package python3-lxml:s390x. 64s Preparing to unpack .../57-python3-lxml_6.0.1-1build1_s390x.deb ... 64s Unpacking python3-lxml:s390x (6.0.1-1build1) ... 64s Selecting previously unselected package python3-lz4. 64s Preparing to unpack .../58-python3-lz4_4.4.4+dfsg-3_s390x.deb ... 64s Unpacking python3-lz4 (4.4.4+dfsg-3) ... 64s Selecting previously unselected package python3-mpmath. 64s Preparing to unpack .../59-python3-mpmath_1.3.0-1_all.deb ... 64s Unpacking python3-mpmath (1.3.0-1) ... 64s Selecting previously unselected package python3-sympy. 64s Preparing to unpack .../60-python3-sympy_1.13.3-5_all.deb ... 64s Unpacking python3-sympy (1.13.3-5) ... 64s Selecting previously unselected package python3-ufolib2. 64s Preparing to unpack .../61-python3-ufolib2_0.17.1+dfsg1-1_all.deb ... 64s Unpacking python3-ufolib2 (0.17.1+dfsg1-1) ... 64s Selecting previously unselected package python3-all. 64s Preparing to unpack .../62-python3-all_3.13.7-1_s390x.deb ... 64s Unpacking python3-all (3.13.7-1) ... 64s Selecting previously unselected package libzopfli1. 64s Preparing to unpack .../63-libzopfli1_1.0.3-3_s390x.deb ... 64s Unpacking libzopfli1 (1.0.3-3) ... 64s Selecting previously unselected package python3-zopfli. 64s Preparing to unpack .../64-python3-zopfli_0.2.3.post1-1_s390x.deb ... 64s Unpacking python3-zopfli (0.2.3.post1-1) ... 64s Selecting previously unselected package unicode-data. 64s Preparing to unpack .../65-unicode-data_16.0.0-1_all.deb ... 64s Unpacking unicode-data (16.0.0-1) ... 64s Selecting previously unselected package python3-fonttools. 64s Preparing to unpack .../66-python3-fonttools_4.57.0-2build1_s390x.deb ... 64s Unpacking python3-fonttools (4.57.0-2build1) ... 64s Selecting previously unselected package python3-kiwisolver. 64s Preparing to unpack .../67-python3-kiwisolver_1.4.7-3build2_s390x.deb ... 64s Unpacking python3-kiwisolver (1.4.7-3build2) ... 64s Selecting previously unselected package python3-packaging. 64s Preparing to unpack .../68-python3-packaging_25.0-1_all.deb ... 64s Unpacking python3-packaging (25.0-1) ... 64s Selecting previously unselected package libqhull-r8.0:s390x. 64s Preparing to unpack .../69-libqhull-r8.0_2020.2-6build1_s390x.deb ... 64s Unpacking libqhull-r8.0:s390x (2020.2-6build1) ... 64s Selecting previously unselected package python3-matplotlib. 64s Preparing to unpack .../70-python3-matplotlib_3.10.7+dfsg1-1_s390x.deb ... 64s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 64s Selecting previously unselected package python3-ase. 64s Preparing to unpack .../71-python3-ase_3.24.0-1_all.deb ... 64s Unpacking python3-ase (3.24.0-1) ... 64s Selecting previously unselected package ase. 64s Preparing to unpack .../72-ase_3.24.0-1_all.deb ... 64s Unpacking ase (3.24.0-1) ... 64s Selecting previously unselected package libaec0:s390x. 64s Preparing to unpack .../73-libaec0_1.1.3-1_s390x.deb ... 64s Unpacking libaec0:s390x (1.1.3-1) ... 64s Selecting previously unselected package libsz2:s390x. 64s Preparing to unpack .../74-libsz2_1.1.3-1_s390x.deb ... 64s Unpacking libsz2:s390x (1.1.3-1) ... 64s Selecting previously unselected package libhdf5-310:s390x. 64s Preparing to unpack .../75-libhdf5-310_1.14.5+repack-3build1_s390x.deb ... 64s Unpacking libhdf5-310:s390x (1.14.5+repack-3build1) ... 65s Selecting previously unselected package libhdf5-hl-310:s390x. 65s Preparing to unpack .../76-libhdf5-hl-310_1.14.5+repack-3build1_s390x.deb ... 65s Unpacking libhdf5-hl-310:s390x (1.14.5+repack-3build1) ... 65s Selecting previously unselected package libnetcdf22:s390x. 65s Preparing to unpack .../77-libnetcdf22_1%3a4.9.3-1build1_s390x.deb ... 65s Unpacking libnetcdf22:s390x (1:4.9.3-1build1) ... 65s Selecting previously unselected package python3-cftime. 65s Preparing to unpack .../78-python3-cftime_1.6.4-2build1_s390x.deb ... 65s Unpacking python3-cftime (1.6.4-2build1) ... 65s Selecting previously unselected package python3-iniconfig. 65s Preparing to unpack .../79-python3-iniconfig_1.1.1-2_all.deb ... 65s Unpacking python3-iniconfig (1.1.1-2) ... 65s Selecting previously unselected package python3-netcdf4. 65s Preparing to unpack .../80-python3-netcdf4_1.7.3-1_s390x.deb ... 65s Unpacking python3-netcdf4 (1.7.3-1) ... 65s Selecting previously unselected package python3-pluggy. 65s Preparing to unpack .../81-python3-pluggy_1.6.0-1_all.deb ... 65s Unpacking python3-pluggy (1.6.0-1) ... 65s Selecting previously unselected package python3-pycodcif. 65s Preparing to unpack .../82-python3-pycodcif_3.11.0+dfsg-1build1_s390x.deb ... 65s Unpacking python3-pycodcif (3.11.0+dfsg-1build1) ... 65s Selecting previously unselected package python3-pytest. 65s Preparing to unpack .../83-python3-pytest_8.3.5-2_all.deb ... 65s Unpacking python3-pytest (8.3.5-2) ... 65s Selecting previously unselected package python3-pytest-mock. 65s Preparing to unpack .../84-python3-pytest-mock_3.14.0-3_all.deb ... 65s Unpacking python3-pytest-mock (3.14.0-3) ... 65s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 65s Setting up liblcms2-2:s390x (2.16-2) ... 65s Setting up python3-iniconfig (1.1.1-2) ... 65s Setting up libsharpyuv0:s390x (1.5.0-0.1) ... 65s Setting up libxrender1:s390x (1:0.9.12-1) ... 65s Setting up python3-lz4 (4.4.4+dfsg-3) ... 65s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 65s Setting up fonts-lyx (2.4.4-1) ... 65s Setting up x11-common (1:7.7+24ubuntu1) ... 65s Setting up libdeflate0:s390x (1.23-2) ... 65s Setting up libqhull-r8.0:s390x (2020.2-6build1) ... 65s Setting up python3-all (3.13.7-1) ... 65s Setting up python3-pycodcif (3.11.0+dfsg-1build1) ... 65s Setting up libgomp1:s390x (15.2.0-5ubuntu1) ... 65s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 65s Setting up libaec0:s390x (1.1.3-1) ... 65s Setting up python3-platformdirs (4.3.7-1) ... 65s Setting up python3-fs (2.4.16-7) ... 65s Setting up unicode-data (16.0.0-1) ... 65s Setting up libsymspg2:s390x (2.6.0-3build1) ... 65s Setting up python3-decorator (5.2.1-2) ... 65s Setting up libblas3:s390x (3.12.1-6build1) ... 65s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 65s Setting up python3-packaging (25.0-1) ... 66s Setting up libzopfli1 (1.0.3-3) ... 66s Setting up libfreetype6:s390x (2.13.3+dfsg-1build1) ... 66s Setting up python3-brotli (1.1.0-2build6) ... 66s Setting up python3-cycler (0.12.1-2) ... 66s Setting up libimagequant0:s390x (2.18.0-1build1) ... 66s Setting up fonts-dejavu-mono (2.37-8) ... 66s Setting up python3-kiwisolver (1.4.7-3build2) ... 66s Setting up python3-numpy-dev:s390x (1:2.2.4+ds-1ubuntu1) ... 66s Setting up libtcl8.6:s390x (8.6.17+dfsg-1) ... 66s Setting up fonts-dejavu-core (2.37-8) ... 66s Setting up libjpeg-turbo8:s390x (2.1.5-4ubuntu2) ... 66s Setting up libgfortran5:s390x (15.2.0-5ubuntu1) ... 66s Setting up python3-pluggy (1.6.0-1) ... 66s Setting up libwebp7:s390x (1.5.0-0.1) ... 66s Setting up libxslt1.1:s390x (1.1.43-0.3) ... 66s Setting up libopenjp2-7:s390x (2.5.3-2.1) ... 66s Setting up libharfbuzz0b:s390x (12.1.0-1) ... 66s Setting up python3-dateutil (2.9.0-4) ... 66s Setting up libxss1:s390x (1:1.2.3-1build3) ... 66s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 66s Setting up python3-mpmath (1.3.0-1) ... 66s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 66s Setting up libwebpmux3:s390x (1.5.0-0.1) ... 66s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 66s Setting up libsz2:s390x (1.1.3-1) ... 66s Setting up libjs-bootstrap (3.4.1+dfsg-6) ... 66s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 66s Setting up python3-sympy (1.13.3-5) ... 71s Setting up liblapack3:s390x (3.12.1-6build1) ... 71s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 71s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 71s Setting up python3-pytest (8.3.5-2) ... 71s Setting up libwebpdemux2:s390x (1.5.0-0.1) ... 71s Setting up python3-zopfli (0.2.3.post1-1) ... 71s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 71s Setting up libraqm0:s390x (0.10.3-1) ... 71s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 72s Setting up libhdf5-310:s390x (1.14.5+repack-3build1) ... 72s Setting up python3-pytest-mock (3.14.0-3) ... 72s Setting up python3-lxml:s390x (6.0.1-1build1) ... 72s Setting up libtiff6:s390x (4.7.0-3ubuntu3) ... 72s Setting up python3-contourpy (1.3.1-1build2) ... 73s Setting up libfontconfig1:s390x (2.15.0-2.3ubuntu1) ... 73s Setting up python3-spglib (2.6.0-3build1) ... 73s Setting up libhdf5-hl-310:s390x (1.14.5+repack-3build1) ... 73s Setting up libxft2:s390x (2.3.6-1build1) ... 73s Setting up python3-scipy (1.15.3-1ubuntu1) ... 75s Setting up libtk8.6:s390x (8.6.17-1) ... 75s Setting up libnetcdf22:s390x (1:4.9.3-1build1) ... 75s Setting up python3.13-tk (3.13.9-1) ... 75s Setting up python3-pil:s390x (11.3.0-1ubuntu2) ... 75s Setting up python3-cftime (1.6.4-2build1) ... 76s Setting up python3-netcdf4 (1.7.3-1) ... 76s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 76s Setting up python3.14-tk (3.14.0-4) ... 76s Setting up blt (2.5.3+dfsg-8) ... 76s Setting up python3-tk:s390x (3.13.9-1) ... 76s Setting up python3-pil.imagetk:s390x (11.3.0-1ubuntu2) ... 76s Setting up python3-fonttools (4.57.0-2build1) ... 76s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... 76s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 78s Setting up python3-ase (3.24.0-1) ... 79s Setting up ase (3.24.0-1) ... 79s Processing triggers for libc-bin (2.42-0ubuntu3) ... 79s Processing triggers for man-db (2.13.1-1) ... 80s autopkgtest [20:27:35]: test command1: for py in $(py3versions -s); do cd "$AUTOPKGTEST_TMP"; $py -m ase test --pytest -p no:cacheprovider; done 80s autopkgtest [20:27:35]: test command1: [----------------------- 80s About to run pytest with these parameters: 80s -p 80s no:cacheprovider 85s ============================= test session starts ============================== 85s platform linux -- Python 3.13.9, pytest-8.3.5, pluggy-1.6.0 85s 85s Libraries 85s ========= 85s 85s ase-3.24.0 /usr/lib/python3/dist-packages/ase 85s numpy-2.2.4 /usr/lib/python3/dist-packages/numpy 85s scipy-1.15.3 /usr/lib/python3/dist-packages/scipy 85s matplotlib-3.10.7+dfsg1 /usr/lib/python3/dist-packages/matplotlib 85s spglib-2.6.0 /usr/lib/python3/dist-packages/spglib 85s ase_ext not installed 85s flask not installed 85s psycopg2 not installed 85s pyamg not installed 85s 85s 85s Calculators 85s =========== 85s Config: No configuration file specified 85s Datafiles: ase-datafiles package not installed 85s 85s [ ] abinit not installed: 'abinit' 85s [ ] ace cfg= 85s [ ] aims not installed: 'aims' 85s [ ] amber cfg= 85s [ ] asap not installed: asap3 85s [ ] castep not installed: 'castep' 85s [ ] cp2k not installed: 'cp2k' 85s [ ] crystal cfg= 85s [ ] demon cfg= 85s [ ] demonnano cfg= 85s [ ] dftb not installed: No 'dftb' section 85s [ ] dftd3 not installed: 'dftd3' 85s [ ] dmol cfg= 85s [ ] elk not installed: No 'elk' section 85s [ ] espresso not installed: 'espresso' 85s [ ] exciting not installed: 'exciting' 85s [ ] gamess_us cfg= 85s [ ] gaussian cfg= 85s [ ] gpaw not installed: gpaw 85s [ ] gromacs not installed: 'gromacs' 85s [ ] gulp cfg= 85s [ ] hotbit cfg= 85s [ ] lammpslib not installed: missing python wrappers: cannot import lammps 85s [ ] lammpsrun not installed: 'lammps' 85s [ ] mopac not installed: No 'mopac' section 85s [ ] nwchem not installed: No 'nwchem' section 85s [ ] octopus not installed: 'octopus' 85s [ ] onetep cfg= 85s [ ] openmx not installed: 'openmx' 85s [ ] orca not installed: 'orca' 85s [ ] plumed not installed: 85s [ ] psi4 not installed: psi4 85s [ ] qchem cfg= 85s [ ] siesta not installed: No 'siesta' section 85s [ ] turbomole cfg= 85s [ ] vasp not installed: 'vasp' 85s 85s * Use --calculators option to select calculators. 85s 85s * See "ase test --help-calculators" on how to configure calculators. 85s 85s * This listing only includes external calculators known by the test 85s system. Others are "configured" by setting an environment variable 85s like "ASE_xxx_COMMAND" in order to allow tests to run. Please see 85s the documentation of that individual calculator. 85s 85s 85s rootdir: /usr/lib/python3/dist-packages/ase/test 85s configfile: pytest.ini 85s plugins: typeguard-4.4.2, mock-3.14.0 85s collected 3522 items 85s 85s atoms/test_atom.py .. [ 0%] 85s atoms/test_atom_scaled_pos.py ... [ 0%] 85s atoms/test_atoms.py .............. [ 0%] 85s atoms/test_atoms_angle.py . [ 0%] 85s atoms/test_atoms_distance.py .. [ 0%] 85s atoms/test_atoms_formula.py . [ 0%] 85s atoms/test_atoms_get_duplicates.py . [ 0%] 85s atoms/test_atoms_get_positions.py ... [ 0%] 85s atoms/test_atoms_getitem.py ............. [ 1%] 85s atoms/test_atoms_indices.py . [ 1%] 85s atoms/test_atoms_info_copy.py . [ 1%] 85s atoms/test_atoms_instantiation.py .... [ 1%] 85s atoms/test_build.py . [ 1%] 85s atoms/test_center.py ........... [ 1%] 85s atoms/test_center_nonperiodic.py . [ 1%] 85s atoms/test_compare_atoms.py . [ 1%] 85s atoms/test_deprecated_get_set.py ... [ 1%] 85s atoms/test_get_angles.py . [ 1%] 85s atoms/test_h2.py . [ 1%] 85s atoms/test_mic.py . [ 1%] 85s atoms/test_momenta_velocities.py ... [ 1%] 85s atoms/test_permute_axes.py . [ 1%] 85s atoms/test_rotate.py . [ 2%] 85s atoms/test_rotate_euler.py . [ 2%] 85s atoms/test_scaled_positions.py . [ 2%] 85s atoms/test_set_get_angle.py . [ 2%] 85s bandstructure/test_bandpath.py ....... [ 2%] 85s bandstructure/test_bandstructure.py ... [ 2%] 85s bandstructure/test_bandstructure_json.py . [ 2%] 87s bandstructure/test_bandstructure_many.py ....................... [ 3%] 87s bandstructure/test_bandstructure_transform_mcl.py . [ 3%] 87s bandstructure/test_resolve_custom_kpoints.py ..... [ 3%] 87s bravais/test_2d_cell_pbc.py ..... [ 3%] 88s bravais/test_bravais_type_engine.py ................. [ 3%] 88s bravais/test_eps.py .. [ 3%] 88s bravais/test_hex.py . [ 3%] 88s bravais/test_lattices.py ............................................... [ 5%] 88s .. [ 5%] 88s bravais/test_line_lattice.py . [ 5%] 88s bravais/test_main.py ......................... [ 6%] 88s bravais/test_orcc_mcl.py . [ 6%] 88s bravais/test_reduce.py . [ 6%] 88s bravais/test_standard_form.py ....................... [ 6%] 88s build_/test_attach.py .... [ 6%] 88s build_/test_build_bulk.py .............................................. [ 8%] 88s ........................................................................ [ 10%] 88s ........................................................................ [ 12%] 88s .................................................. [ 13%] 88s build_/test_bulk.py .......... [ 13%] 88s build_/test_connected.py .... [ 14%] 88s build_/test_minimize_rotation_and_translation.py .. [ 14%] 89s build_/test_supercells.py .............................................. [ 15%] 91s .............. [ 15%] 91s build_/test_surface.py ... [ 15%] 91s build_/test_surface_stack.py . [ 15%] 91s build_/test_surface_terminations.py . [ 16%] 91s calculator/abinit/test_abinit_cmdline.py s [ 16%] 91s calculator/abinit/test_main.py sssssssss [ 16%] 91s calculator/ace/test_ace.py s [ 16%] 91s calculator/ace/test_ace_calculator.py . [ 16%] 91s calculator/aims/test_H2O_aims.py s [ 16%] 91s calculator/aims/test_aims_interface.py s [ 16%] 91s calculator/aims/test_version.py . [ 16%] 91s calculator/amber/test_amber.py s [ 16%] 91s calculator/castep/test_castep_interface.py ........ [ 16%] 91s calculator/cp2k/test_cp2k_H2_None.py s [ 16%] 91s calculator/cp2k/test_cp2k_dcd.py s [ 16%] 91s calculator/cp2k/test_cp2k_many.py ssssssssssss [ 17%] 91s calculator/cp2k/test_cp2k_restart.py . [ 17%] 91s calculator/cp2k/test_cp2k_stress.py s [ 17%] 91s calculator/crystal/test_bulk.py s [ 17%] 91s calculator/crystal/test_graphene.py s [ 17%] 91s calculator/crystal/test_molecule.py s [ 17%] 91s calculator/demon/test_h2o.py s [ 17%] 91s calculator/demon/test_h2o_xas_xes.py s [ 17%] 91s calculator/demonnano/test_h2o.py s [ 17%] 91s calculator/dftb/test_dftb_bandstructure.py s [ 17%] 91s calculator/dftb/test_dftb_relax_bulk.py .s [ 17%] 91s calculator/dftb/test_dftb_relax_dimer.py s [ 17%] 91s calculator/dftb/test_dftb_relax_surface.py s [ 17%] 91s calculator/dftb/test_dipole.py s [ 17%] 91s calculator/dftb/test_xtb_static.py s [ 17%] 91s calculator/dmol/test_Al_dmol.py s [ 17%] 91s calculator/dmol/test_water_dmol.py s [ 17%] 91s calculator/elk/test_elk.py ss [ 17%] 91s calculator/espresso/test_espresso.py ..ssss.. [ 17%] 91s calculator/exciting/test_exciting.py sssss [ 18%] 91s calculator/exciting/test_runner.py ssss. [ 18%] 91s calculator/gamess_us/test_basis_ecp.py s [ 18%] 91s calculator/gamess_us/test_gamess_us.py sssss [ 18%] 91s calculator/gaussian/test_h2of.py s [ 18%] 91s calculator/gaussian/test_optimizer_irc.py ss [ 18%] 91s calculator/gaussian/test_water.py s [ 18%] 91s calculator/gpaw_/test_no_spin_and_spin.py s [ 18%] 91s calculator/gpaw_/test_read_text_output.py . [ 18%] 92s calculator/gpaw_/test_wannier.py ...........................ssssssssssss [ 19%] 92s ssssssssssssssssssssssssssssssssssssssssssssssssssssssss....sss [ 21%] 92s calculator/gromacs/test_gromacs.py .ss [ 21%] 92s calculator/kim/test_cutoff_skin.py s [ 21%] 92s calculator/kim/test_energy_forces_stress.py s [ 21%] 92s calculator/kim/test_modify_parameters.py s [ 21%] 92s calculator/kim/test_multi_neighlist.py s [ 21%] 92s calculator/kim/test_relax.py s [ 21%] 92s calculator/kim/test_single_atom.py s [ 21%] 92s calculator/kim/test_update_coords.py s [ 21%] 92s calculator/kim/test_update_neighbor_parameters.py s [ 21%] 92s calculator/lammps/test_prism.py ........................................ [ 22%] 92s . [ 22%] 92s calculator/lammpslib/test_Pt_stress_cellopt.py s [ 22%] 92s calculator/lammpslib/test_lammpslib_change_cell_bcs.py s [ 22%] 92s calculator/lammpslib/test_lammpslib_neighlist_bug.py s [ 22%] 92s calculator/lammpslib/test_lammpslib_post_changebox_cmds.py s [ 22%] 92s calculator/lammpslib/test_lammpslib_simple.py sssss [ 23%] 92s calculator/lammpslib/test_lammpslib_small_nonperiodic.py s [ 23%] 92s calculator/lammpsrun/test_Ar_minimize.py ss [ 23%] 92s calculator/lammpsrun/test_NaCl_minimize.py s [ 23%] 92s calculator/lammpsrun/test_Pt_md_constraints_multistep.py s [ 23%] 92s calculator/lammpsrun/test_Pt_stress_cellopt.py s [ 23%] 92s calculator/lammpsrun/test_lammps_units.py s [ 23%] 92s calculator/lammpsrun/test_no_data_file_wrap.py s [ 23%] 92s calculator/nwchem/test_nwchem_bands.py s [ 23%] 92s calculator/nwchem/test_nwchem_broken_symmetry.py s [ 23%] 92s calculator/nwchem/test_nwchem_cmdline.py s [ 23%] 92s calculator/nwchem/test_nwchem_eigenvalues.py ss [ 23%] 92s calculator/nwchem/test_nwchem_h3o2m.py s [ 23%] 92s calculator/nwchem/test_nwchem_multitask.py sss [ 23%] 92s calculator/nwchem/test_nwchem_parser.py . [ 23%] 92s calculator/nwchem/test_nwchem_runmany.py ssssssssssssss [ 24%] 92s calculator/nwchem/test_nwchem_spin_symmetry.py s [ 24%] 92s calculator/nwchem/test_nwchem_stress.py s [ 24%] 92s calculator/nwchem/test_nwchem_version.py s [ 24%] 92s calculator/octopus/test_big.py ss [ 24%] 92s calculator/onetep/test_onetep.py s [ 24%] 92s calculator/openmx/test_md.py s [ 24%] 92s calculator/openmx/test_version.py . [ 24%] 92s calculator/plumed/test_plumed.py ssssss [ 24%] 92s calculator/psi4/test_psi4_HF_3_21G.py s [ 24%] 92s calculator/qchem/test_qchem_calculator.py s [ 24%] 92s calculator/siesta/lrtddft/test_siesta_lrtddft.py s [ 24%] 92s calculator/siesta/lrtddft/test_siesta_raman.py s [ 24%] 92s calculator/siesta/test_bandstructure.py s [ 24%] 92s calculator/siesta/test_dos.py s [ 24%] 92s calculator/siesta/test_fdf_io.py s [ 24%] 92s calculator/siesta/test_siesta_read_eigenvalues.py .s [ 24%] 92s calculator/siesta/test_siesta_version.py . [ 24%] 92s calculator/siesta/test_siesta_zmat.py sss [ 24%] 92s calculator/siesta/test_write_input.py sssss [ 24%] 92s calculator/socketio/test_h2_stiffness.py sssss [ 25%] 92s calculator/socketio/test_integration.py ss [ 25%] 92s calculator/socketio/test_ipi_protocol_bfgs.py ss [ 25%] 93s calculator/socketio/test_python_interface.py . [ 25%] 93s calculator/socketio/test_socket_io_mpi_line.py . [ 25%] 93s calculator/test_al.py s [ 25%] 93s calculator/test_bond_polarizability.py ... [ 25%] 93s calculator/test_calculator.py .. [ 25%] 93s calculator/test_ch4_energy.py sssssssssss [ 25%] 93s calculator/test_command.py ............................................. [ 27%] 93s .................. [ 27%] 93s calculator/test_dftd3.py sssssssssssssss [ 27%] 93s calculator/test_eam.py . [ 27%] 93s calculator/test_eam_run.py sssssssss [ 28%] 93s calculator/test_fd.py . [ 28%] 93s calculator/test_gulp.py s [ 28%] 93s calculator/test_gulp_opt.py s [ 28%] 93s calculator/test_h2.py sss [ 28%] 93s calculator/test_h2_bond_force.py sssssss [ 28%] 93s calculator/test_h2morse.py ..... [ 28%] 94s calculator/test_harmonic.py ...... [ 28%] 94s calculator/test_lj.py ....... [ 29%] 94s calculator/test_mopac.py ss [ 29%] 94s calculator/test_mopac_version.py ... [ 29%] 94s calculator/test_morse.py .... [ 29%] 94s calculator/test_orca.py .sssssss [ 29%] 94s calculator/test_orca_qmmm.py s [ 29%] 94s calculator/test_polarizability.py . [ 29%] 94s calculator/test_si_stress.py sssss [ 29%] 95s calculator/test_subprocess_calculator.py ..s. [ 29%] 95s calculator/test_traj.py sssss.sss [ 30%] 95s calculator/test_ts09.py .. [ 30%] 95s calculator/turbomole/test_turbomole_2h2o.py s [ 30%] 95s calculator/turbomole/test_turbomole_H2.py ss [ 30%] 95s calculator/turbomole/test_turbomole_au13.py s [ 30%] 95s calculator/turbomole/test_turbomole_calculator.py .... [ 30%] 95s calculator/turbomole/test_turbomole_h2o.py ss [ 30%] 95s calculator/turbomole/test_turbomole_h3o2m.py s [ 30%] 95s calculator/turbomole/test_turbomole_optimizer.py ss [ 30%] 95s calculator/turbomole/test_turbomole_parameters.py ............. [ 30%] 95s calculator/turbomole/test_turbomole_qmmm.py s [ 30%] 95s calculator/turbomole/test_turbomole_reader.py . [ 31%] 95s calculator/turbomole/test_turbomole_statpt.py s [ 31%] 95s calculator/vasp/test_chgcar.py . [ 31%] 95s calculator/vasp/test_vasp_Al_volrelax.py s [ 31%] 95s calculator/vasp/test_vasp_calculator.py ..................... [ 31%] 95s calculator/vasp/test_vasp_charge.py ssssss [ 31%] 95s calculator/vasp/test_vasp_check_state.py s [ 31%] 95s calculator/vasp/test_vasp_co.py s [ 31%] 95s calculator/vasp/test_vasp_converge.py . [ 31%] 95s calculator/vasp/test_vasp_errors.py . [ 31%] 95s calculator/vasp/test_vasp_freq.py s [ 31%] 95s calculator/vasp/test_vasp_get_dos.py s [ 32%] 95s calculator/vasp/test_vasp_incar.py .......... [ 32%] 95s calculator/vasp/test_vasp_input.py ...................... [ 32%] 95s calculator/vasp/test_vasp_kpoints.py ....ss... [ 33%] 95s calculator/vasp/test_vasp_potcar.py ss [ 33%] 95s calculator/vasp/test_vasp_setup.py sssssss [ 33%] 95s calculator/vasp/test_vasp_wdir.py s [ 33%] 95s calculator/vasp/test_vasp_xml.py s [ 33%] 95s calculator/vasp/test_version.py . [ 33%] 95s cell/test_cell.py ........... [ 33%] 95s cell/test_cell_completion.py . [ 33%] 95s cell/test_cell_conv.py . [ 33%] 95s cell/test_cell_uncompletion.py .. [ 33%] 95s cell/test_conventional_map.py ....................... [ 34%] 95s cell/test_minkowski_reduce.py ....................... [ 35%] 96s cell/test_niggli.py .................... [ 35%] 96s cell/test_niggli_ndim.py ............................ [ 36%] 96s cell/test_niggli_op.py . [ 36%] 96s cell/test_standard_form.py . [ 36%] 96s cell/test_supercell.py .... [ 36%] 96s cli/test_ag.py . [ 36%] 97s cli/test_bandstructure.py . [ 36%] 98s cli/test_bzplot.py ... [ 36%] 98s cli/test_complete.py . [ 36%] 99s cli/test_convert.py . [ 36%] 101s cli/test_diff.py ......... [ 37%] 102s cli/test_dimensionality.py .... [ 37%] 103s cli/test_exec.py ..... [ 37%] 103s cli/test_imports.py . [ 37%] 105s cli/test_info.py ..... [ 37%] 105s cli/test_run.py . [ 37%] 105s constraints/test_CO2linear_Au111.py .. [ 37%] 105s constraints/test_external_force.py . [ 37%] 105s constraints/test_fix_bond_length_mic.py .. [ 37%] 109s constraints/test_fix_symmetry.py ........... [ 38%] 109s constraints/test_fixatoms.py . [ 38%] 111s constraints/test_fixbondlength_CO2_Au111.py .. [ 38%] 111s constraints/test_fixbonds.py . [ 38%] 111s constraints/test_fixcartesian.py .. [ 38%] 111s constraints/test_fixcom.py ... [ 38%] 111s constraints/test_fixedline_fixedplane.py ............................... [ 39%] 111s ............. [ 39%] 111s constraints/test_fixedmode.py . [ 39%] 112s constraints/test_fixinternals.py ....... [ 39%] 112s constraints/test_fixscaled.py .. [ 39%] 112s constraints/test_fixsubsetcom.py ... [ 40%] 112s constraints/test_getindices.py . [ 40%] 112s constraints/test_hookean.py . [ 40%] 112s constraints/test_hookean_pbc.py . [ 40%] 112s constraints/test_mirror.py . [ 40%] 112s constraints/test_negativeindex.py . [ 40%] 112s constraints/test_parameteric_constr.py . [ 40%] 112s constraints/test_repeat_FixAtoms.py . [ 40%] 112s constraints/test_setpos.py . [ 40%] 114s db/test_cli.py ...... [ 40%] 120s db/test_db.py ..sss [ 40%] 120s db/test_db2.py ..xxx. [ 40%] 120s db/test_db_web.py ssss. [ 40%] 120s db/test_jsondb.py . [ 40%] 120s db/test_metadata.py .. [ 40%] 120s db/test_mysql.py ssssss [ 41%] 120s db/test_o2b2o.py . [ 41%] 120s db/test_row.py . [ 41%] 120s db/test_sql_db_ext_tables.py .xxx.xxx.xxx.xxx.xxx.xxx [ 41%] 121s db/test_sqlite.py .... [ 41%] 121s db/test_table.py . [ 42%] 121s db/test_update.py .. [ 42%] 121s dft/test_bandgap.py . [ 42%] 121s dft/test_bee.py ... [ 42%] 121s dft/test_bz.py . [ 42%] 121s dft/test_dos.py . [ 42%] 121s dft/test_hex.py . [ 42%] 121s dft/test_interpolate.py . [ 42%] 121s dft/test_kpt_density_monkhorst_pack.py . [ 42%] 121s dft/test_kpts_size_offsets.py ........ [ 42%] 122s dft/test_min_distance_monkhorst_pack.py ... [ 42%] 122s dft/test_monoclinic.py . [ 42%] 122s emt/test_emt.py . [ 42%] 122s emt/test_emt1.py . [ 42%] 122s emt/test_emt2.py . [ 42%] 122s emt/test_emt_h3o2m.py . [ 42%] 122s emt/test_emt_stress.py . [ 42%] 122s filter/test_cellfilter.py sssssssssssssssssss [ 43%] 122s filter/test_filter.py . [ 43%] 123s filter/test_strain.py ss [ 43%] 123s filter/test_strain_emt.py . [ 43%] 123s fio/aims/test_aims_out.py ......... [ 43%] 123s fio/aims/test_aims_out_chunks.py ....................................... [ 44%] 123s ............................................................... [ 46%] 123s fio/aims/test_geometry.py ........... [ 46%] 123s fio/aims/test_write_control.py ...x.......x [ 47%] 123s fio/castep/test_castep_reader.py ............... [ 47%] 123s fio/castep/test_read_bands.py . [ 47%] 123s fio/exciting/test_exciting.py ssssss [ 47%] 123s fio/octopus/test_input.py .... [ 48%] 123s fio/octopus/test_output.py ...... [ 48%] 123s fio/test_abinit.py ..... [ 48%] 123s fio/test_ace.py .. [ 48%] 123s fio/test_amber.py ... [ 48%] 123s fio/test_animate.py . [ 48%] 123s fio/test_atoms_bytes.py . [ 48%] 123s fio/test_bundletrajectory.py ...... [ 48%] 123s fio/test_castep.py ........... [ 49%] 123s fio/test_cfg.py . [ 49%] 123s fio/test_cif.py ..................... [ 49%] 123s fio/test_cifblock.py ........ [ 49%] 123s fio/test_cjson.py .. [ 49%] 123s fio/test_compression.py ...................... [ 50%] 123s fio/test_cube.py .... [ 50%] 123s fio/test_dftb.py ..... [ 50%] 123s fio/test_dlp.py ... [ 50%] 123s fio/test_dmol.py . [ 50%] 123s fio/test_elk.py ... [ 50%] 123s fio/test_eon_multi_image_read.py . [ 51%] 123s fio/test_eon_readwrite.py ...... [ 51%] 123s fio/test_espresso.py ................. [ 51%] 124s fio/test_espresso_ph.py ..... [ 51%] 124s fio/test_external_io_formats.py .... [ 51%] 124s fio/test_extxyz.py ................................. [ 52%] 124s fio/test_fileobj.py . [ 52%] 124s fio/test_formats.py ... [ 52%] 124s fio/test_gaussian.py .......... [ 53%] 124s fio/test_gaussian_gjf_input.py ........... [ 53%] 124s fio/test_gaussian_out.py .......... [ 53%] 124s fio/test_gen.py ......................... [ 54%] 124s fio/test_gpaw.py . [ 54%] 124s fio/test_gpumd.py .......... [ 54%] 124s fio/test_info.py . [ 54%] 124s fio/test_ioformats.py .sssssssssssssssssssssssssssssssssssssssssssssssss [ 56%] 124s sssssssssssssssssssssssssssssssssssssssssssssssss [ 57%] 124s fio/test_iread_path.py . [ 57%] 124s fio/test_json_arrays.py . [ 57%] 124s fio/test_jsonio.py .. [ 57%] 124s fio/test_jsonio_atoms.py ... [ 57%] 124s fio/test_lammpsdump.py .................. [ 58%] 124s fio/test_magmom.py . [ 58%] 124s fio/test_magres.py .. [ 58%] 124s fio/test_match_magic.py . [ 58%] 124s fio/test_mustem.py .. [ 58%] 124s fio/test_netcdftrajectory.py .... [ 58%] 124s fio/test_nomad.py . [ 58%] 124s fio/test_nwchem.py ..... [ 58%] 125s fio/test_oi.py ......................................................... [ 60%] 125s ......................... [ 61%] 125s fio/test_oldtraj.py . [ 61%] 125s fio/test_onetep.py .... [ 61%] 125s fio/test_openmx.py .. [ 61%] 125s fio/test_opls.py . [ 61%] 125s fio/test_orca.py ..... [ 61%] 125s fio/test_parallel.py . [ 61%] 125s fio/test_pdb_cell_io.py .... [ 61%] 125s fio/test_pdb_extra.py .. [ 61%] 125s fio/test_pickle_bundle_trajectory.py ..x.x.. [ 61%] 125s fio/test_povray.py ss.ss [ 62%] 125s fio/test_prismatic.py .. [ 62%] 126s fio/test_proteindatabank.py .......... [ 62%] 126s fio/test_py.py . [ 62%] 126s fio/test_pycodcif_read.py . [ 62%] 126s fio/test_qbox.py .. [ 62%] 126s fio/test_readwrite_errors.py ........ [ 62%] 126s fio/test_res.py . [ 62%] 126s fio/test_rmc6f.py ............ [ 63%] 126s fio/test_sdf.py .. [ 63%] 126s fio/test_siesta.py ... [ 63%] 126s fio/test_traj_bytesio.py . [ 63%] 126s fio/test_trajectory.py .... [ 63%] 126s fio/test_trajectory_heterogeneous.py . [ 63%] 126s fio/test_turbomole.py . [ 63%] 126s fio/test_ulm.py .... [ 63%] 126s fio/test_ulm_dummy.py . [ 63%] 126s fio/test_v_sim.py . [ 63%] 126s fio/test_vasp_structure.py ........ [ 63%] 126s fio/test_wout.py .. [ 63%] 126s fio/test_xsd_bond.py . [ 63%] 126s fio/test_xsf_spec.py . [ 64%] 126s fio/test_xyz.py ...... [ 64%] 126s fio/vasp/test_incar_writer.py ............. [ 64%] 126s fio/vasp/test_poscar.py . [ 64%] 126s fio/vasp/test_read_vasp_xml.py ....... [ 64%] 126s fio/vasp/test_vasp_out.py ....... [ 64%] 126s fio/vasp/test_vasp_outcar_parsers.py ............................ [ 65%] 126s fio/vasp/test_vasp_poscar.py ............ [ 66%] 126s forcefields/test_acn.py . [ 66%] 126s forcefields/test_aic.py . [ 66%] 126s forcefields/test_combine_mm.py . [ 66%] 130s forcefields/test_combine_mm2.py . [ 66%] 131s forcefields/test_counterions.py . [ 66%] 132s forcefields/test_forceqmmm.py .............. [ 66%] 132s forcefields/test_qmmm.py . [ 66%] 132s forcefields/test_qmmm_acn.py . [ 66%] 133s forcefields/test_rattle.py . [ 66%] 134s forcefields/test_rattle_linear.py . [ 66%] 134s forcefields/test_tip4p.py . [ 66%] 134s forcefields/test_tipnp.py . [ 66%] 134s forcefields/test_utils_ff_vdw.py . [ 66%] 134s ga/test_add_candidates.py . [ 66%] 135s ga/test_basic_example_main_run.py . [ 66%] 137s ga/test_bulk_operators.py . [ 66%] 137s ga/test_chain_operators.py . [ 66%] 137s ga/test_create_database.py . [ 67%] 137s ga/test_cutandsplicepairing.py . [ 67%] 138s ga/test_database_logic.py . [ 67%] 138s ga/test_element_operators.py . [ 67%] 138s ga/test_film_operators.py . [ 67%] 138s ga/test_mutations.py . 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[ 95%] 202s test_singlepoint_dft_calc.py . [ 95%] 202s test_singlepointcalc.py . [ 95%] 202s test_springcalc.py . [ 95%] 202s test_stm.py . [ 95%] 202s test_stress.py .. [ 95%] 204s test_structure_comparator.py .................... [ 96%] 204s test_symbols.py ........... [ 96%] 204s test_thermochemistry.py .........s..... [ 97%] 204s test_things.py . [ 97%] 204s test_timing.py . [ 97%] 204s test_units.py .. [ 97%] 204s test_util.py ......................... [ 98%] 204s test_versionnumber.py . [ 98%] 204s test_x3d.py s [ 98%] 204s test_xrdebye.py ... [ 98%] 204s test_xwopen.py ... [ 98%] 204s test_zmatrix.py .... [ 98%] 205s transport/test_transport_calculator.py . [ 98%] 205s vibrations/test_albrecht.py .... [ 98%] 206s vibrations/test_bond_polarizability_raman.py ... [ 98%] 206s vibrations/test_combine.py . [ 98%] 206s vibrations/test_folding.py . [ 98%] 206s vibrations/test_franck_condon.py ... [ 98%] 206s vibrations/test_pickle2json.py . [ 98%] 206s vibrations/test_placzek.py .... [ 98%] 206s vibrations/test_profeta_albrecht.py . [ 98%] 206s vibrations/test_vib.py ................................... [ 99%] 206s vibrations/test_vibrations_example.py . [100%] 206s 206s =============================== warnings summary =============================== 206s :488 206s :488: RuntimeWarning: numpy.ndarray size changed, may indicate binary incompatibility. Expected 16 from C header, got 96 from PyObject 206s 206s calculator/turbomole/test_turbomole_calculator.py::test_turbomole_default 206s /usr/lib/python3/dist-packages/ase/calculators/turbomole/parameters.py:449: ResourceWarning: unclosed file <_io.FileIO name='/dev/null' mode='wb' closefd=True> 206s if k in list(self.parameter_spec[p].keys()): 206s Enable tracemalloc to get traceback where the object was allocated. 206s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 206s 206s constraints/test_fix_symmetry.py::test_fail_md 206s /usr/lib/python3/dist-packages/_pytest/python.py:159: ResourceWarning: unclosed file <_io.TextIOWrapper name='/dev/null' mode='a' encoding='utf-8'> 206s result = testfunction(**testargs) 206s Enable tracemalloc to get traceback where the object was allocated. 206s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 206s 206s db/test_mysql.py::test_write_read_with_calculator 206s /usr/lib/python3/dist-packages/_pytest/nodes.py:285: ResourceWarning: unclosed database in 206s def __hash__(self) -> int: 206s Enable tracemalloc to get traceback where the object was allocated. 206s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 206s 206s db/test_mysql.py::test_write_read_with_calculator 206s /usr/lib/python3/dist-packages/_pytest/nodes.py:285: ResourceWarning: unclosed database in 206s def __hash__(self) -> int: 206s Enable tracemalloc to get traceback where the object was allocated. 206s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 206s 206s db/test_mysql.py::test_write_read_with_calculator 206s /usr/lib/python3/dist-packages/_pytest/nodes.py:285: ResourceWarning: unclosed database in 206s def __hash__(self) -> int: 206s Enable tracemalloc to get traceback where the object was allocated. 206s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 206s 206s fio/test_oi.py::test_ioformat[eps] 206s /usr/lib/python3/dist-packages/fontTools/misc/textTools.py:11: ResourceWarning: unclosed database in 206s class Tag(str): 206s Enable tracemalloc to get traceback where the object was allocated. 206s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 206s 206s fio/test_oi.py::test_ioformat[eps] 206s /usr/lib/python3/dist-packages/fontTools/misc/textTools.py:11: ResourceWarning: unclosed database in 206s class Tag(str): 206s Enable tracemalloc to get traceback where the object was allocated. 206s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 206s 206s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 206s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed file <_io.FileIO name='/dev/null' mode='wb' closefd=True> 206s def lru_cache(maxsize=128, typed=False): 206s Enable tracemalloc to get traceback where the object was allocated. 206s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 206s 206s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 206s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed database in 206s def lru_cache(maxsize=128, typed=False): 206s Enable tracemalloc to get traceback where the object was allocated. 206s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 206s 206s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 206s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed database in 206s def lru_cache(maxsize=128, typed=False): 206s Enable tracemalloc to get traceback where the object was allocated. 206s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 206s 206s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 206s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed database in 206s def lru_cache(maxsize=128, typed=False): 206s Enable tracemalloc to get traceback where the object was allocated. 206s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 206s 206s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 206s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed database in 206s def lru_cache(maxsize=128, typed=False): 206s Enable tracemalloc to get traceback where the object was allocated. 206s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 206s 206s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 206s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed database in 206s def lru_cache(maxsize=128, typed=False): 206s Enable tracemalloc to get traceback where the object was allocated. 206s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 206s 206s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 206s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed database in 206s def lru_cache(maxsize=128, typed=False): 206s Enable tracemalloc to get traceback where the object was allocated. 206s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 206s 206s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 206s /usr/lib/python3.13/functools.py:504: ResourceWarning: unclosed database in 206s def lru_cache(maxsize=128, typed=False): 206s Enable tracemalloc to get traceback where the object was allocated. 206s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 206s 206s geometry/test_analysis.py::test_analysis 206s /usr/lib/python3/dist-packages/scipy/sparse/_coo.py:215: ResourceWarning: unclosed database in 206s self.coords = tuple(np.asarray(idx, dtype=idx_dtype) 206s Enable tracemalloc to get traceback where the object was allocated. 206s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 206s 206s gui/test_run.py::test_surface 206s /usr/lib/python3/dist-packages/_pytest/nodes.py:285: ResourceWarning: unclosed file <_io.TextIOWrapper name='/dev/null' mode='w' encoding='utf-8'> 206s def __hash__(self) -> int: 206s Enable tracemalloc to get traceback where the object was allocated. 206s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 206s 206s md/test_bussi.py::test_bussi 206s /usr/lib/python3/dist-packages/ase/test/md/test_bussi.py:15: ResourceWarning: unclosed file <_io.TextIOWrapper name='/dev/null' mode='a' encoding='utf-8'> 206s with pytest.raises(ValueError): 206s Enable tracemalloc to get traceback where the object was allocated. 206s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 206s 206s optimize/test_optimizers.py::test_run_twice[SciPyFminCG] 206s /usr/lib/python3/dist-packages/numpy/_core/_ufunc_config.py:454: ResourceWarning: unclosed file <_io.BufferedWriter name='fragile_BFGSLineSearch.traj'> 206s self._token = _extobj_contextvar.set(extobj) 206s Enable tracemalloc to get traceback where the object was allocated. 206s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 206s 206s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 206s ==== 2964 passed, 532 skipped, 26 xfailed, 20 warnings in 125.10s (0:02:05) ==== 206s :0: DeprecationWarning: builtin type swigvarlink has no __module__ attribute 207s autopkgtest [20:29:42]: test command1: -----------------------] 207s autopkgtest [20:29:42]: test command1: - - - - - - - - - - results - - - - - - - - - - 207s command1 PASS 208s autopkgtest [20:29:43]: @@@@@@@@@@@@@@@@@@@@ summary 208s command1 PASS