0s autopkgtest [16:33:10]: starting date and time: 2025-10-20 16:33:10+0000 0s autopkgtest [16:33:10]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [16:33:10]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0e754fai/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest,src:python-pluggy --apt-upgrade pdb-tools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=pytest/8.4.2-1 python-pluggy/1.6.0-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-13.secgroup --name adt-resolute-s390x-pdb-tools-20251020-163309-juju-7f2275-prod-proposed-migration-environment-2-45790906-35bc-4c9d-8ae5-68325a6d64df --image adt/ubuntu-resolute-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 5s Creating nova instance adt-resolute-s390x-pdb-tools-20251020-163309-juju-7f2275-prod-proposed-migration-environment-2-45790906-35bc-4c9d-8ae5-68325a6d64df from image adt/ubuntu-resolute-s390x-server-20251020.img (UUID af6042e7-5f94-4102-8fd4-5557e2338897)... 56s autopkgtest [16:34:06]: testbed dpkg architecture: s390x 56s autopkgtest [16:34:06]: testbed apt version: 3.1.8ubuntu1 57s autopkgtest [16:34:07]: @@@@@@@@@@@@@@@@@@@@ test bed setup 57s autopkgtest [16:34:07]: testbed release detected to be: None 58s autopkgtest [16:34:08]: updating testbed package index (apt update) 58s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 59s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 59s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 59s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 59s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 59s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [56.9 kB] 59s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [646 kB] 59s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [14.3 kB] 59s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x Packages [107 kB] 59s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted s390x Packages [940 B] 59s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe s390x Packages [400 kB] 59s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse s390x Packages [3812 B] 59s Fetched 1318 kB in 1s (1112 kB/s) 60s Reading package lists... 61s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 61s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 61s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 61s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 62s Reading package lists... 62s Reading package lists... 62s Building dependency tree... 62s Reading state information... 62s Calculating upgrade... 62s The following packages will be upgraded: 62s libjson-c5 python3-inflect python3-oauthlib python3-zipp 63s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 63s Need to get 175 kB of archives. 63s After this operation, 31.7 kB of additional disk space will be used. 63s Get:1 http://ftpmaster.internal/ubuntu resolute/main s390x libjson-c5 s390x 0.18+ds-1.1 [36.8 kB] 63s Get:2 http://ftpmaster.internal/ubuntu resolute/main s390x python3-inflect all 7.5.0-1 [33.9 kB] 63s Get:3 http://ftpmaster.internal/ubuntu resolute/main s390x python3-oauthlib all 3.3.1-1 [93.5 kB] 63s Get:4 http://ftpmaster.internal/ubuntu resolute/main s390x python3-zipp all 3.23.0-1 [10.4 kB] 63s dpkg-preconfigure: unable to re-open stdin: No such file or directory 63s Fetched 175 kB in 0s (403 kB/s) 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56857 files and directories currently installed.) 63s Preparing to unpack .../libjson-c5_0.18+ds-1.1_s390x.deb ... 63s Unpacking libjson-c5:s390x (0.18+ds-1.1) over (0.18+ds-1) ... 63s Preparing to unpack .../python3-inflect_7.5.0-1_all.deb ... 63s Unpacking python3-inflect (7.5.0-1) over (7.3.1-2) ... 63s Preparing to unpack .../python3-oauthlib_3.3.1-1_all.deb ... 63s Unpacking python3-oauthlib (3.3.1-1) over (3.2.2-3) ... 63s Preparing to unpack .../python3-zipp_3.23.0-1_all.deb ... 63s Unpacking python3-zipp (3.23.0-1) over (3.21.0-1) ... 63s Setting up python3-zipp (3.23.0-1) ... 63s Setting up python3-inflect (7.5.0-1) ... 64s Setting up python3-oauthlib (3.3.1-1) ... 64s Setting up libjson-c5:s390x (0.18+ds-1.1) ... 64s Processing triggers for libc-bin (2.42-0ubuntu3) ... 64s autopkgtest [16:34:14]: upgrading testbed (apt dist-upgrade and autopurge) 64s Reading package lists... 64s Building dependency tree... 64s Reading state information... 64s Calculating upgrade... 64s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 65s Reading package lists... 65s Building dependency tree... 65s Reading state information... 65s Solving dependencies... 65s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 68s autopkgtest [16:34:18]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP Mon Sep 22 08:56:47 UTC 2025 69s autopkgtest [16:34:19]: @@@@@@@@@@@@@@@@@@@@ apt-source pdb-tools 71s Get:1 http://ftpmaster.internal/ubuntu resolute/universe pdb-tools 2.5.1-2 (dsc) [2170 B] 71s Get:2 http://ftpmaster.internal/ubuntu resolute/universe pdb-tools 2.5.1-2 (tar) [182 kB] 71s Get:3 http://ftpmaster.internal/ubuntu resolute/universe pdb-tools 2.5.1-2 (diff) [3404 B] 71s gpgv: Signature made Wed Sep 25 10:45:15 2024 UTC 71s gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 71s gpgv: issuer "merkys@debian.org" 71s gpgv: Can't check signature: No public key 71s dpkg-source: warning: cannot verify inline signature for ./pdb-tools_2.5.1-2.dsc: no acceptable signature found 71s autopkgtest [16:34:21]: testing package pdb-tools version 2.5.1-2 73s autopkgtest [16:34:23]: build not needed 76s autopkgtest [16:34:26]: test command1: preparing testbed 77s Reading package lists... 77s Building dependency tree... 77s Reading state information... 77s Solving dependencies... 77s The following NEW packages will be installed: 77s pdb-tools python3-iniconfig python3-packaging python3-pdbtools 77s python3-pluggy python3-pytest 77s 0 upgraded, 6 newly installed, 0 to remove and 0 not upgraded. 77s Need to get 409 kB of archives. 77s After this operation, 2177 kB of additional disk space will be used. 77s Get:1 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pdbtools all 2.5.1-2 [32.6 kB] 77s Get:2 http://ftpmaster.internal/ubuntu resolute/universe s390x pdb-tools all 2.5.1-2 [28.1 kB] 77s Get:3 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-iniconfig all 1.1.1-2 [6024 B] 77s Get:4 http://ftpmaster.internal/ubuntu resolute/main s390x python3-packaging all 25.0-1 [52.8 kB] 77s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe s390x python3-pluggy all 1.6.0-1 [21.0 kB] 77s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe s390x python3-pytest all 8.4.2-1 [268 kB] 78s Fetched 409 kB in 1s (812 kB/s) 78s Selecting previously unselected package python3-pdbtools. 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56867 files and directories currently installed.) 78s Preparing to unpack .../0-python3-pdbtools_2.5.1-2_all.deb ... 78s Unpacking python3-pdbtools (2.5.1-2) ... 78s Selecting previously unselected package pdb-tools. 78s Preparing to unpack .../1-pdb-tools_2.5.1-2_all.deb ... 78s Unpacking pdb-tools (2.5.1-2) ... 78s Selecting previously unselected package python3-iniconfig. 78s Preparing to unpack .../2-python3-iniconfig_1.1.1-2_all.deb ... 78s Unpacking python3-iniconfig (1.1.1-2) ... 78s Selecting previously unselected package python3-packaging. 78s Preparing to unpack .../3-python3-packaging_25.0-1_all.deb ... 78s Unpacking python3-packaging (25.0-1) ... 78s Selecting previously unselected package python3-pluggy. 78s Preparing to unpack .../4-python3-pluggy_1.6.0-1_all.deb ... 78s Unpacking python3-pluggy (1.6.0-1) ... 78s Selecting previously unselected package python3-pytest. 78s Preparing to unpack .../5-python3-pytest_8.4.2-1_all.deb ... 78s Unpacking python3-pytest (8.4.2-1) ... 78s Setting up python3-iniconfig (1.1.1-2) ... 78s Setting up python3-pdbtools (2.5.1-2) ... 78s Setting up python3-packaging (25.0-1) ... 78s Setting up python3-pluggy (1.6.0-1) ... 78s Setting up pdb-tools (2.5.1-2) ... 78s Setting up python3-pytest (8.4.2-1) ... 78s Processing triggers for man-db (2.13.1-1) ... 80s autopkgtest [16:34:30]: test command1: PYTHONPATH=tests SKIP_TTY_TESTS=1 pytest-3 80s autopkgtest [16:34:30]: test command1: [----------------------- 80s ============================= test session starts ============================== 80s platform linux -- Python 3.13.7, pytest-8.4.2, pluggy-1.6.0 80s rootdir: /tmp/autopkgtest.038JEu/build.1ri/src 80s plugins: typeguard-4.4.2 80s collected 362 items 80s 80s tests/test_pdb_b.py .s.s... [ 1%] 81s tests/test_pdb_chain.py .s.s... [ 3%] 81s tests/test_pdb_chainbows.py ..s. [ 4%] 81s tests/test_pdb_chainxseg.py ..s. [ 6%] 81s tests/test_pdb_chkensemble.py .....s.. [ 8%] 81s tests/test_pdb_delchain.py .s.s.... [ 10%] 81s tests/test_pdb_delelem.py .s.s.... [ 12%] 81s tests/test_pdb_delhetatm.py ..s. [ 13%] 81s tests/test_pdb_delinsertion.py .s..... [ 15%] 81s tests/test_pdb_delres.py s.s.......... [ 19%] 81s tests/test_pdb_delresname.py .s.s.... [ 21%] 81s tests/test_pdb_element.py ..s. [ 22%] 81s tests/test_pdb_fixinsert.py .s.s.... [ 24%] 81s tests/test_pdb_fromcif.py ..s. [ 25%] 81s tests/test_pdb_gap.py ..s. [ 27%] 81s tests/test_pdb_head.py s.s... [ 28%] 81s tests/test_pdb_intersect.py ..s [ 29%] 81s tests/test_pdb_keepcoord.py ..s. [ 30%] 81s tests/test_pdb_merge.py ..s [ 31%] 81s tests/test_pdb_mkensemble.py ...s [ 32%] 81s tests/test_pdb_occ.py .s.s... [ 34%] 81s tests/test_pdb_reatom.py .s.s..... [ 37%] 81s tests/test_pdb_reres.py .s.s....... [ 40%] 81s tests/test_pdb_rplchain.py s.s..... [ 42%] 81s tests/test_pdb_rplresname.py s.s..... [ 44%] 81s tests/test_pdb_seg.py .s.s... [ 46%] 81s tests/test_pdb_segxchain.py ..s. [ 47%] 81s tests/test_pdb_selaltloc.py ............s....s..................... [ 58%] 81s tests/test_pdb_selatom.py s.s..... [ 60%] 81s tests/test_pdb_selchain.py s.s........ [ 63%] 81s tests/test_pdb_selelem.py s.s..... [ 65%] 81s tests/test_pdb_selhetatm.py ..s. [ 66%] 81s tests/test_pdb_selmodel.py s.s..... [ 69%] 81s tests/test_pdb_selres.py s.s........... [ 72%] 81s tests/test_pdb_selresname.py .s.s.... [ 75%] 81s tests/test_pdb_selseg.py s.s..... [ 77%] 81s tests/test_pdb_shiftres.py .s.s..... [ 79%] 81s tests/test_pdb_sort.py ..s.. [ 81%] 81s tests/test_pdb_splitchain.py .s.s.... [ 83%] 81s tests/test_pdb_splitmodel.py .s.s.... [ 85%] 81s tests/test_pdb_splitseg.py .s.s.... [ 87%] 81s tests/test_pdb_tidy.py .........s.. [ 91%] 81s tests/test_pdb_tocif.py .s....... [ 93%] 81s tests/test_pdb_tofasta.py ...s.. [ 95%] 81s tests/test_pdb_uniqname.py ..s.s. [ 96%] 81s tests/test_pdb_validate.py .s... [ 98%] 81s tests/test_pdb_wc.py ..s... [100%] 81s 81s ======================= 288 passed, 74 skipped in 0.41s ======================== 81s autopkgtest [16:34:31]: test command1: -----------------------] 82s command1 PASS 82s autopkgtest [16:34:32]: test command1: - - - - - - - - - - results - - - - - - - - - - 82s autopkgtest [16:34:32]: test autodep8-python3: preparing testbed 108s Creating nova instance adt-resolute-s390x-pdb-tools-20251020-163309-juju-7f2275-prod-proposed-migration-environment-2-45790906-35bc-4c9d-8ae5-68325a6d64df from image adt/ubuntu-resolute-s390x-server-20251020.img (UUID af6042e7-5f94-4102-8fd4-5557e2338897)... 146s autopkgtest [16:35:36]: testbed dpkg architecture: s390x 146s autopkgtest [16:35:36]: testbed apt version: 3.1.8ubuntu1 146s autopkgtest [16:35:36]: @@@@@@@@@@@@@@@@@@@@ test bed setup 147s autopkgtest [16:35:37]: testbed release detected to be: resolute 147s autopkgtest [16:35:37]: updating testbed package index (apt update) 148s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 148s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 148s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 148s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 148s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [646 kB] 149s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [14.3 kB] 149s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 149s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [56.9 kB] 149s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x Packages [107 kB] 149s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted s390x Packages [940 B] 149s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe s390x Packages [400 kB] 149s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse s390x Packages [3812 B] 149s Fetched 1318 kB in 2s (855 kB/s) 150s Reading package lists... 151s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 151s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 151s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 151s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 152s Reading package lists... 152s Reading package lists... 152s Building dependency tree... 152s Reading state information... 152s Calculating upgrade... 152s The following packages will be upgraded: 152s libjson-c5 python3-inflect python3-oauthlib python3-zipp 152s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 152s Need to get 175 kB of archives. 152s After this operation, 31.7 kB of additional disk space will be used. 152s Get:1 http://ftpmaster.internal/ubuntu resolute/main s390x libjson-c5 s390x 0.18+ds-1.1 [36.8 kB] 153s Get:2 http://ftpmaster.internal/ubuntu resolute/main s390x python3-inflect all 7.5.0-1 [33.9 kB] 153s Get:3 http://ftpmaster.internal/ubuntu resolute/main s390x python3-oauthlib all 3.3.1-1 [93.5 kB] 153s Get:4 http://ftpmaster.internal/ubuntu resolute/main s390x python3-zipp all 3.23.0-1 [10.4 kB] 153s dpkg-preconfigure: unable to re-open stdin: No such file or directory 153s Fetched 175 kB in 1s (221 kB/s) 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56857 files and directories currently installed.) 153s Preparing to unpack .../libjson-c5_0.18+ds-1.1_s390x.deb ... 153s Unpacking libjson-c5:s390x (0.18+ds-1.1) over (0.18+ds-1) ... 153s Preparing to unpack .../python3-inflect_7.5.0-1_all.deb ... 153s Unpacking python3-inflect (7.5.0-1) over (7.3.1-2) ... 153s Preparing to unpack .../python3-oauthlib_3.3.1-1_all.deb ... 153s Unpacking python3-oauthlib (3.3.1-1) over (3.2.2-3) ... 153s Preparing to unpack .../python3-zipp_3.23.0-1_all.deb ... 153s Unpacking python3-zipp (3.23.0-1) over (3.21.0-1) ... 153s Setting up python3-zipp (3.23.0-1) ... 154s Setting up python3-inflect (7.5.0-1) ... 154s Setting up python3-oauthlib (3.3.1-1) ... 154s Setting up libjson-c5:s390x (0.18+ds-1.1) ... 154s Processing triggers for libc-bin (2.42-0ubuntu3) ... 154s autopkgtest [16:35:44]: upgrading testbed (apt dist-upgrade and autopurge) 154s Reading package lists... 154s Building dependency tree... 154s Reading state information... 154s Calculating upgrade... 154s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 155s Reading package lists... 155s Building dependency tree... 155s Reading state information... 155s Solving dependencies... 155s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 158s Reading package lists... 158s Building dependency tree... 158s Reading state information... 158s Solving dependencies... 158s The following NEW packages will be installed: 158s python3-all python3-pdbtools 158s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 158s Need to get 33.4 kB of archives. 158s After this operation, 326 kB of additional disk space will be used. 158s Get:1 http://ftpmaster.internal/ubuntu resolute/main s390x python3-all s390x 3.13.7-1 [886 B] 158s Get:2 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pdbtools all 2.5.1-2 [32.6 kB] 159s Fetched 33.4 kB in 0s (112 kB/s) 159s Selecting previously unselected package python3-all. 159s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56867 files and directories currently installed.) 159s Preparing to unpack .../python3-all_3.13.7-1_s390x.deb ... 159s Unpacking python3-all (3.13.7-1) ... 159s Selecting previously unselected package python3-pdbtools. 159s Preparing to unpack .../python3-pdbtools_2.5.1-2_all.deb ... 159s Unpacking python3-pdbtools (2.5.1-2) ... 159s Setting up python3-pdbtools (2.5.1-2) ... 159s Setting up python3-all (3.13.7-1) ... 161s autopkgtest [16:35:51]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import pdbtools; print(pdbtools)" ; done 161s autopkgtest [16:35:51]: test autodep8-python3: [----------------------- 162s Testing with python3.13: 162s 162s autopkgtest [16:35:52]: test autodep8-python3: -----------------------] 163s autodep8-python3 PASS (superficial) 163s autopkgtest [16:35:53]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 163s autopkgtest [16:35:53]: @@@@@@@@@@@@@@@@@@@@ summary 163s command1 PASS 163s autodep8-python3 PASS (superficial)