0s autopkgtest [09:52:16]: starting date and time: 2026-01-23 09:52:16+0000 0s autopkgtest [09:52:16]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [09:52:16]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.xo7l5u26/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade nipype --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.14.2-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-s390x-5.secgroup --name adt-resolute-s390x-nipype-20260123-095216-juju-7f2275-prod-proposed-migration-environment-2-b2bd5317-ebef-4114-9d7d-c30e0e74e2c7 --image adt/ubuntu-resolute-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-s390x -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 5s Creating nova instance adt-resolute-s390x-nipype-20260123-095216-juju-7f2275-prod-proposed-migration-environment-2-b2bd5317-ebef-4114-9d7d-c30e0e74e2c7 from image adt/ubuntu-resolute-s390x-server-20260123.img (UUID 5f2e306c-5dfc-4ef6-8be2-414f657c7562)... 78s autopkgtest [09:53:34]: testbed dpkg architecture: s390x 78s autopkgtest [09:53:34]: testbed apt version: 3.1.13 78s autopkgtest [09:53:34]: @@@@@@@@@@@@@@@@@@@@ test bed setup 78s autopkgtest [09:53:34]: testbed release detected to be: None 79s autopkgtest [09:53:35]: updating testbed package index (apt update) 79s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 79s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 79s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 79s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 79s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [23.6 kB] 79s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1058 kB] 79s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 79s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [95.5 kB] 79s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x Packages [113 kB] 79s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe s390x Packages [847 kB] 80s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse s390x Packages [9152 B] 80s Fetched 2273 kB in 1s (2890 kB/s) 82s Reading package lists... 82s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 82s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 82s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 82s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 85s Reading package lists... 85s Reading package lists... 85s Building dependency tree... 85s Reading state information... 86s Calculating upgrade... 86s The following packages were automatically installed and are no longer required: 86s python3.13 python3.13-minimal 86s Use 'sudo apt autoremove' to remove them. 86s The following NEW packages will be installed: 86s libpython3.14-minimal libpython3.14-stdlib python3.14 python3.14-minimal 86s The following packages will be upgraded: 86s libpython3-stdlib python3 python3-gdbm python3-minimal 86s 4 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 86s Need to get 6689 kB of archives. 86s After this operation, 24.3 MB of additional disk space will be used. 86s Get:1 http://ftpmaster.internal/ubuntu resolute/main s390x libpython3.14-minimal s390x 3.14.2-1 [917 kB] 86s Get:2 http://ftpmaster.internal/ubuntu resolute/main s390x python3.14-minimal s390x 3.14.2-1 [2510 kB] 86s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x python3-minimal s390x 3.14.2-1 [28.2 kB] 86s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x python3 s390x 3.14.2-1 [22.9 kB] 86s Get:5 http://ftpmaster.internal/ubuntu resolute/main s390x libpython3.14-stdlib s390x 3.14.2-1 [2373 kB] 86s Get:6 http://ftpmaster.internal/ubuntu resolute/main s390x python3.14 s390x 3.14.2-1 [816 kB] 86s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x libpython3-stdlib s390x 3.14.2-1 [10.9 kB] 86s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x python3-gdbm s390x 3.14.2-1 [11.1 kB] 86s dpkg-preconfigure: unable to re-open stdin: No such file or directory 86s Fetched 6689 kB in 0s (13.5 MB/s) 86s Selecting previously unselected package libpython3.14-minimal:s390x. 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 87685 files and directories currently installed.) 87s Preparing to unpack .../libpython3.14-minimal_3.14.2-1_s390x.deb ... 87s Unpacking libpython3.14-minimal:s390x (3.14.2-1) ... 87s Selecting previously unselected package python3.14-minimal. 87s Preparing to unpack .../python3.14-minimal_3.14.2-1_s390x.deb ... 87s Unpacking python3.14-minimal (3.14.2-1) ... 87s Setting up libpython3.14-minimal:s390x (3.14.2-1) ... 87s Setting up python3.14-minimal (3.14.2-1) ... 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88027 files and directories currently installed.) 92s Preparing to unpack .../python3-minimal_3.14.2-1_s390x.deb ... 92s Unpacking python3-minimal (3.14.2-1) over (3.13.9-3) ... 92s Setting up python3-minimal (3.14.2-1) ... 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88027 files and directories currently installed.) 93s Preparing to unpack .../python3_3.14.2-1_s390x.deb ... 93s running python pre-rtupdate hooks for python3.14... 93s Unpacking python3 (3.14.2-1) over (3.13.9-3) ... 93s Selecting previously unselected package libpython3.14-stdlib:s390x. 93s Preparing to unpack .../libpython3.14-stdlib_3.14.2-1_s390x.deb ... 93s Unpacking libpython3.14-stdlib:s390x (3.14.2-1) ... 93s Selecting previously unselected package python3.14. 93s Preparing to unpack .../python3.14_3.14.2-1_s390x.deb ... 93s Unpacking python3.14 (3.14.2-1) ... 93s Preparing to unpack .../libpython3-stdlib_3.14.2-1_s390x.deb ... 93s Unpacking libpython3-stdlib:s390x (3.14.2-1) over (3.13.9-3) ... 93s Preparing to unpack .../python3-gdbm_3.14.2-1_s390x.deb ... 93s Unpacking python3-gdbm (3.14.2-1) over (3.13.9-3) ... 93s Setting up libpython3.14-stdlib:s390x (3.14.2-1) ... 93s Setting up python3.14 (3.14.2-1) ... 96s Setting up libpython3-stdlib:s390x (3.14.2-1) ... 96s Setting up python3-gdbm (3.14.2-1) ... 96s Setting up python3 (3.14.2-1) ... 96s running python rtupdate hooks for python3.14... 96s running python post-rtupdate hooks for python3.14... 96s Processing triggers for man-db (2.13.1-1) ... 97s Processing triggers for systemd (259-1ubuntu2) ... 98s autopkgtest [09:53:54]: upgrading testbed (apt dist-upgrade and autopurge) 98s Reading package lists... 98s Building dependency tree... 98s Reading state information... 98s Calculating upgrade... 99s The following packages were automatically installed and are no longer required: 99s python3.13 python3.13-minimal 99s Use 'sudo apt autoremove' to remove them. 99s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 99s Reading package lists... 100s Building dependency tree... 100s Reading state information... 100s Solving dependencies... 100s The following packages will be REMOVED: 100s python3.13* python3.13-minimal* 100s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 100s After this operation, 8012 kB disk space will be freed. 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88457 files and directories currently installed.) 101s Removing python3.13 (3.13.11-1) ... 101s Removing python3.13-minimal (3.13.11-1) ... 103s Processing triggers for man-db (2.13.1-1) ... 104s Processing triggers for systemd (259-1ubuntu2) ... 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88430 files and directories currently installed.) 104s Purging configuration files for python3.13-minimal (3.13.11-1) ... 107s autopkgtest [09:54:03]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP Mon Jan 12 15:39:23 UTC 2026 107s autopkgtest [09:54:03]: @@@@@@@@@@@@@@@@@@@@ apt-source nipype 109s Get:1 http://ftpmaster.internal/ubuntu resolute/universe nipype 1.10.0-1 (dsc) [2988 B] 109s Get:2 http://ftpmaster.internal/ubuntu resolute/universe nipype 1.10.0-1 (tar) [2925 kB] 109s Get:3 http://ftpmaster.internal/ubuntu resolute/universe nipype 1.10.0-1 (diff) [17.5 kB] 109s gpgv: Signature made Sat Dec 20 11:29:54 2025 UTC 109s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 109s gpgv: issuer "emollier@debian.org" 109s gpgv: Can't check signature: No public key 109s dpkg-source: warning: cannot verify inline signature for ./nipype_1.10.0-1.dsc: no acceptable signature found 109s autopkgtest [09:54:05]: testing package nipype version 1.10.0-1 109s autopkgtest [09:54:05]: build not needed 110s autopkgtest [09:54:06]: test run-unit-test: preparing testbed 110s Reading package lists... 111s Building dependency tree... 111s Reading state information... 112s Solving dependencies... 112s The following NEW packages will be installed: 112s diffstat docutils-common fontconfig fontconfig-config fonts-dejavu-core 112s fonts-dejavu-mono gettext graphviz libaec0 libaom3 libblas3 libcairo2 112s libcdt6 libcgraph8 libdatrie1 libde265-0 libdeflate0 libfontconfig1 112s libfreetype6 libgd3 libgfortran5 libgomp1 libgraphite2-3 libgvc7 112s libgvplugin-gd8 libgvplugin-pango8 libgvpr2 libharfbuzz0b libhdf5-310 112s libhdf5-hl-310 libheif-plugin-aomdec libheif-plugin-libde265 libheif1 112s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery 112s libjs-underscore libjson-perl liblapack3 libltdl7 liblzf1 libpango-1.0-0 112s libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpixman-1-0 112s libqhull-r8.0 libsharpyuv0 libsz2 libthai-data libthai0 libtiff6 libwebp7 112s libxcb-render0 libxcb-shm0 libxdot4 libxpm4 libxrender1 libxslt1.1 112s python-nipype-doc python3-acres python3-alabaster python3-all 112s python3-ci-info python3-click python3-decorator python3-deepdiff 112s python3-defusedxml python3-dipy python3-dipy-lib python3-docutils 112s python3-etelemetry python3-execnet python3-filelock python3-h5py 112s python3-h5py-serial python3-imagesize python3-iniconfig python3-jsonpickle 112s python3-looseversion python3-lxml python3-networkx python3-nibabel 112s python3-nipype python3-numpy python3-numpy-dev python3-orderly-set 112s python3-pandas python3-pandas-lib python3-pluggy python3-prov python3-psutil 112s python3-puremagic python3-pydot python3-pytest python3-pytest-xdist 112s python3-pytz python3-rdflib python3-roman-numerals python3-scipy 112s python3-setuptools-scm python3-simplejson python3-snowballstemmer 112s python3-sphinx python3-tqdm python3-traits python3-trx-python python3.13 112s python3.13-minimal quilt sgml-base sphinx-common xml-core 112s 0 upgraded, 115 newly installed, 0 to remove and 0 not upgraded. 112s Need to get 92.3 MB of archives. 112s After this operation, 463 MB of additional disk space will be used. 112s Get:1 http://ftpmaster.internal/ubuntu resolute/main s390x python3.13-minimal s390x 3.13.11-1 [2405 kB] 112s Get:2 http://ftpmaster.internal/ubuntu resolute/main s390x python3-numpy-dev s390x 1:2.3.5+ds-3 [146 kB] 112s Get:3 http://ftpmaster.internal/ubuntu resolute/main s390x libblas3 s390x 3.12.1-7ubuntu1 [255 kB] 112s Get:4 http://ftpmaster.internal/ubuntu resolute/main s390x libgfortran5 s390x 15.2.0-11ubuntu1 [629 kB] 113s Get:5 http://ftpmaster.internal/ubuntu resolute/main s390x liblapack3 s390x 3.12.1-7ubuntu1 [2983 kB] 113s Get:6 http://ftpmaster.internal/ubuntu resolute/main s390x python3-numpy s390x 1:2.3.5+ds-3 [5305 kB] 113s Get:7 http://ftpmaster.internal/ubuntu resolute/main s390x python3.13 s390x 3.13.11-1 [758 kB] 113s Get:8 http://ftpmaster.internal/ubuntu resolute/main s390x diffstat s390x 1.68-1 [33.0 kB] 113s Get:9 http://ftpmaster.internal/ubuntu resolute/main s390x sgml-base all 1.31+nmu1 [11.0 kB] 113s Get:10 http://ftpmaster.internal/ubuntu resolute/main s390x xml-core all 0.19build1 [20.3 kB] 113s Get:11 http://ftpmaster.internal/ubuntu resolute/main s390x docutils-common all 0.22.4+dfsg-1 [130 kB] 113s Get:12 http://ftpmaster.internal/ubuntu resolute/main s390x libfreetype6 s390x 2.14.1+dfsg-2 [443 kB] 113s Get:13 http://ftpmaster.internal/ubuntu resolute/main s390x fonts-dejavu-mono all 2.37-8build1 [502 kB] 113s Get:14 http://ftpmaster.internal/ubuntu resolute/main s390x fonts-dejavu-core all 2.37-8build1 [834 kB] 113s Get:15 http://ftpmaster.internal/ubuntu resolute/main s390x fontconfig-config s390x 2.15.0-2.4ubuntu1 [38.2 kB] 113s Get:16 http://ftpmaster.internal/ubuntu resolute/main s390x libfontconfig1 s390x 2.15.0-2.4ubuntu1 [150 kB] 113s Get:17 http://ftpmaster.internal/ubuntu resolute/main s390x fontconfig s390x 2.15.0-2.4ubuntu1 [191 kB] 113s Get:18 http://ftpmaster.internal/ubuntu resolute/main s390x libgomp1 s390x 15.2.0-11ubuntu1 [154 kB] 113s Get:19 http://ftpmaster.internal/ubuntu resolute/main s390x gettext s390x 0.23.2-1 [1062 kB] 113s Get:20 http://ftpmaster.internal/ubuntu resolute/universe s390x libcdt6 s390x 14.1.1-2ubuntu2 [20.7 kB] 113s Get:21 http://ftpmaster.internal/ubuntu resolute/universe s390x libcgraph8 s390x 14.1.1-2ubuntu2 [55.2 kB] 113s Get:22 http://ftpmaster.internal/ubuntu resolute/main s390x libltdl7 s390x 2.5.4-9 [44.4 kB] 113s Get:23 http://ftpmaster.internal/ubuntu resolute/universe s390x libpathplan4 s390x 14.1.1-2ubuntu2 [27.6 kB] 113s Get:24 http://ftpmaster.internal/ubuntu resolute/universe s390x libxdot4 s390x 14.1.1-2ubuntu2 [23.1 kB] 113s Get:25 http://ftpmaster.internal/ubuntu resolute/universe s390x libgvc7 s390x 14.1.1-2ubuntu2 [415 kB] 113s Get:26 http://ftpmaster.internal/ubuntu resolute/universe s390x libgvpr2 s390x 14.1.1-2ubuntu2 [131 kB] 113s Get:27 http://ftpmaster.internal/ubuntu resolute/main s390x libpixman-1-0 s390x 0.46.4-1 [217 kB] 113s Get:28 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-render0 s390x 1.17.0-2build1 [16.9 kB] 113s Get:29 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-shm0 s390x 1.17.0-2build1 [5916 B] 113s Get:30 http://ftpmaster.internal/ubuntu resolute/main s390x libxrender1 s390x 1:0.9.12-1 [20.9 kB] 113s Get:31 http://ftpmaster.internal/ubuntu resolute/main s390x libcairo2 s390x 1.18.4-3 [578 kB] 113s Get:32 http://ftpmaster.internal/ubuntu resolute/main s390x libsharpyuv0 s390x 1.5.0-0.1build1 [16.6 kB] 113s Get:33 http://ftpmaster.internal/ubuntu resolute/main s390x libaom3 s390x 3.13.1-2 [1513 kB] 113s Get:34 http://ftpmaster.internal/ubuntu resolute/main s390x libheif-plugin-aomdec s390x 1.21.2-1 [14.4 kB] 113s Get:35 http://ftpmaster.internal/ubuntu resolute/main s390x libde265-0 s390x 1.0.16-1build1 [182 kB] 113s Get:36 http://ftpmaster.internal/ubuntu resolute/main s390x libheif-plugin-libde265 s390x 1.21.2-1 [10.0 kB] 113s Get:37 http://ftpmaster.internal/ubuntu resolute/main s390x libheif1 s390x 1.21.2-1 [557 kB] 113s Get:38 http://ftpmaster.internal/ubuntu resolute/main s390x libimagequant0 s390x 2.18.0-1build1 [43.3 kB] 113s Get:39 http://ftpmaster.internal/ubuntu resolute/main s390x libjpeg-turbo8 s390x 2.1.5-4ubuntu2 [147 kB] 113s Get:40 http://ftpmaster.internal/ubuntu resolute/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 113s Get:41 http://ftpmaster.internal/ubuntu resolute/main s390x libdeflate0 s390x 1.23-2 [46.0 kB] 113s Get:42 http://ftpmaster.internal/ubuntu resolute/main s390x libjbig0 s390x 2.1-6.1ubuntu3 [32.8 kB] 113s Get:43 http://ftpmaster.internal/ubuntu resolute/main s390x libwebp7 s390x 1.5.0-0.1build1 [227 kB] 113s Get:44 http://ftpmaster.internal/ubuntu resolute/main s390x libtiff6 s390x 4.7.0-3ubuntu3 [222 kB] 113s Get:45 http://ftpmaster.internal/ubuntu resolute/main s390x libxpm4 s390x 1:3.5.17-1build3 [41.5 kB] 113s Get:46 http://ftpmaster.internal/ubuntu resolute/main s390x libgd3 s390x 2.3.3-13ubuntu1 [142 kB] 113s Get:47 http://ftpmaster.internal/ubuntu resolute/universe s390x libgvplugin-gd8 s390x 14.1.1-2ubuntu2 [26.1 kB] 113s Get:48 http://ftpmaster.internal/ubuntu resolute/main s390x libgraphite2-3 s390x 1.3.14-11ubuntu1 [80.5 kB] 113s Get:49 http://ftpmaster.internal/ubuntu resolute/main s390x libharfbuzz0b s390x 12.3.0-4 [569 kB] 113s Get:50 http://ftpmaster.internal/ubuntu resolute/main s390x libthai-data all 0.1.30-1 [155 kB] 113s Get:51 http://ftpmaster.internal/ubuntu resolute/main s390x libdatrie1 s390x 0.2.14-1 [20.7 kB] 113s Get:52 http://ftpmaster.internal/ubuntu resolute/main s390x libthai0 s390x 0.1.30-1 [20.8 kB] 113s Get:53 http://ftpmaster.internal/ubuntu resolute/main s390x libpango-1.0-0 s390x 1.56.4-1 [254 kB] 113s Get:54 http://ftpmaster.internal/ubuntu resolute/main s390x libpangoft2-1.0-0 s390x 1.56.4-1 [52.9 kB] 113s Get:55 http://ftpmaster.internal/ubuntu resolute/main s390x libpangocairo-1.0-0 s390x 1.56.4-1 [28.5 kB] 113s Get:56 http://ftpmaster.internal/ubuntu resolute/universe s390x libgvplugin-pango8 s390x 14.1.1-2ubuntu2 [23.9 kB] 113s Get:57 http://ftpmaster.internal/ubuntu resolute/universe s390x graphviz s390x 14.1.1-2ubuntu2 [58.6 kB] 113s Get:58 http://ftpmaster.internal/ubuntu resolute/universe s390x libaec0 s390x 1.1.4-2 [26.1 kB] 113s Get:59 http://ftpmaster.internal/ubuntu resolute/universe s390x libsz2 s390x 1.1.4-2 [5628 B] 114s Get:60 http://ftpmaster.internal/ubuntu resolute/universe s390x libhdf5-310 s390x 1.14.5+repack-4 [1472 kB] 114s Get:61 http://ftpmaster.internal/ubuntu resolute/universe s390x libhdf5-hl-310 s390x 1.14.5+repack-4 [60.9 kB] 114s Get:62 http://ftpmaster.internal/ubuntu resolute/main s390x libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 114s Get:63 http://ftpmaster.internal/ubuntu resolute/main s390x libjs-underscore all 1.13.7~dfsg+~1.13.0-1 [86.4 kB] 114s Get:64 http://ftpmaster.internal/ubuntu resolute/main s390x libjson-perl all 4.10000-1 [81.9 kB] 114s Get:65 http://ftpmaster.internal/ubuntu resolute/universe s390x liblzf1 s390x 3.6-4build1 [7046 B] 114s Get:66 http://ftpmaster.internal/ubuntu resolute/universe s390x libqhull-r8.0 s390x 2020.2-8 [199 kB] 114s Get:67 http://ftpmaster.internal/ubuntu resolute/main s390x libxslt1.1 s390x 1.1.43-0.3 [163 kB] 114s Get:68 http://ftpmaster.internal/ubuntu resolute/universe s390x python-nipype-doc all 1.10.0-1 [1243 kB] 114s Get:69 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-acres all 0.5.0-2 [8256 B] 114s Get:70 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x python3-all s390x 3.14.2-1 [890 B] 114s Get:71 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-ci-info all 0.3.0-1build1 [7556 B] 114s Get:72 http://ftpmaster.internal/ubuntu resolute/main s390x python3-click all 8.2.0+0.really.8.1.8-1build1 [80.2 kB] 114s Get:73 http://ftpmaster.internal/ubuntu resolute/main s390x python3-decorator all 5.2.1-2 [28.1 kB] 114s Get:74 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-jsonpickle all 4.0.2+dfsg-2 [40.1 kB] 114s Get:75 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-orderly-set all 5.5.0-2 [15.3 kB] 114s Get:76 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-deepdiff all 8.6.1-1 [75.5 kB] 114s Get:77 http://ftpmaster.internal/ubuntu resolute/main s390x python3-defusedxml all 0.7.1-3build1 [42.4 kB] 114s Get:78 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-h5py-serial s390x 3.15.1-4 [1698 kB] 114s Get:79 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-h5py all 3.15.1-4 [11.3 kB] 114s Get:80 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-scipy s390x 1.16.3-3 [19.6 MB] 115s Get:81 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-nibabel all 5.3.3-1 [2699 kB] 115s Get:82 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-tqdm all 4.67.1-7 [93.3 kB] 115s Get:83 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-setuptools-scm all 8.2.1-4 [32.8 kB] 115s Get:84 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-trx-python all 0.3-2 [41.0 kB] 115s Get:85 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-dipy-lib s390x 1.11.0-3 [4186 kB] 115s Get:86 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-dipy all 1.11.0-3 [3623 kB] 115s Get:87 http://ftpmaster.internal/ubuntu resolute/main s390x python3-roman-numerals all 4.1.0-1 [8660 B] 115s Get:88 http://ftpmaster.internal/ubuntu resolute/main s390x python3-docutils all 0.22.4+dfsg-1 [439 kB] 115s Get:89 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-etelemetry all 0.3.1-1build1 [7550 B] 115s Get:90 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-execnet all 2.1.1-1build1 [33.5 kB] 115s Get:91 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-filelock all 3.20.3-1 [13.5 kB] 115s Get:92 http://ftpmaster.internal/ubuntu resolute/main s390x python3-imagesize all 1.4.1-1build1 [6900 B] 115s Get:93 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-iniconfig all 2.1.0-2 [6962 B] 115s Get:94 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-looseversion all 1.3.0-3build1 [8498 B] 115s Get:95 http://ftpmaster.internal/ubuntu resolute/main s390x python3-lxml s390x 6.0.2-1 [2478 kB] 115s Get:96 http://ftpmaster.internal/ubuntu resolute/main s390x python3-networkx all 3.2.1-4ubuntu2 [11.8 MB] 116s Get:97 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-rdflib all 7.1.1-3 [427 kB] 116s Get:98 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pydot all 4.0.1-1 [35.8 kB] 116s Get:99 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-prov all 2.1.1-1 [101 kB] 116s Get:100 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-puremagic all 1.30-1 [39.5 kB] 116s Get:101 http://ftpmaster.internal/ubuntu resolute/main s390x python3-simplejson s390x 3.20.1-1build1 [64.5 kB] 116s Get:102 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-traits s390x 6.4.3-2build3 [4098 kB] 116s Get:103 http://ftpmaster.internal/ubuntu resolute/main s390x python3-psutil s390x 7.1.0-1ubuntu1 [191 kB] 116s Get:104 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-nipype all 1.10.0-1 [1961 kB] 116s Get:105 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pytz all 2025.2-5 [32.4 kB] 116s Get:106 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pandas-lib s390x 2.3.3+dfsg-3 [7599 kB] 116s Get:107 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pandas all 2.3.3+dfsg-3 [2948 kB] 116s Get:108 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pluggy all 1.6.0-2 [21.1 kB] 116s Get:109 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pytest all 9.0.2-2 [277 kB] 116s Get:110 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pytest-xdist all 3.8.0-4 [34.7 kB] 116s Get:111 http://ftpmaster.internal/ubuntu resolute/main s390x python3-snowballstemmer all 3.0.1-1 [65.9 kB] 116s Get:112 http://ftpmaster.internal/ubuntu resolute/main s390x sphinx-common all 8.2.3-12 [657 kB] 116s Get:113 http://ftpmaster.internal/ubuntu resolute/main s390x python3-alabaster all 0.7.16-0.1build1 [18.6 kB] 116s Get:114 http://ftpmaster.internal/ubuntu resolute/main s390x python3-sphinx all 8.2.3-12 [483 kB] 116s Get:115 http://ftpmaster.internal/ubuntu resolute/universe s390x quilt all 0.68-1 [439 kB] 118s Fetched 92.3 MB in 4s (20.7 MB/s) 118s Selecting previously unselected package python3.13-minimal. 118s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88432 files and directories currently installed.) 118s Preparing to unpack .../000-python3.13-minimal_3.13.11-1_s390x.deb ... 118s Unpacking python3.13-minimal (3.13.11-1) ... 118s Selecting previously unselected package python3-numpy-dev:s390x. 118s Preparing to unpack .../001-python3-numpy-dev_1%3a2.3.5+ds-3_s390x.deb ... 118s Unpacking python3-numpy-dev:s390x (1:2.3.5+ds-3) ... 118s Selecting previously unselected package libblas3:s390x. 118s Preparing to unpack .../002-libblas3_3.12.1-7ubuntu1_s390x.deb ... 118s Unpacking libblas3:s390x (3.12.1-7ubuntu1) ... 118s Selecting previously unselected package libgfortran5:s390x. 118s Preparing to unpack .../003-libgfortran5_15.2.0-11ubuntu1_s390x.deb ... 118s Unpacking libgfortran5:s390x (15.2.0-11ubuntu1) ... 118s Selecting previously unselected package liblapack3:s390x. 118s Preparing to unpack .../004-liblapack3_3.12.1-7ubuntu1_s390x.deb ... 118s Unpacking liblapack3:s390x (3.12.1-7ubuntu1) ... 119s Selecting previously unselected package python3-numpy. 119s Preparing to unpack .../005-python3-numpy_1%3a2.3.5+ds-3_s390x.deb ... 119s Unpacking python3-numpy (1:2.3.5+ds-3) ... 120s Selecting previously unselected package python3.13. 120s Preparing to unpack .../006-python3.13_3.13.11-1_s390x.deb ... 120s Unpacking python3.13 (3.13.11-1) ... 120s Selecting previously unselected package diffstat. 120s Preparing to unpack .../007-diffstat_1.68-1_s390x.deb ... 120s Unpacking diffstat (1.68-1) ... 120s Selecting previously unselected package sgml-base. 120s Preparing to unpack .../008-sgml-base_1.31+nmu1_all.deb ... 120s Unpacking sgml-base (1.31+nmu1) ... 120s Selecting previously unselected package xml-core. 120s Preparing to unpack .../009-xml-core_0.19build1_all.deb ... 120s Unpacking xml-core (0.19build1) ... 120s Selecting previously unselected package docutils-common. 120s Preparing to unpack .../010-docutils-common_0.22.4+dfsg-1_all.deb ... 120s Unpacking docutils-common (0.22.4+dfsg-1) ... 120s Selecting previously unselected package libfreetype6:s390x. 120s Preparing to unpack .../011-libfreetype6_2.14.1+dfsg-2_s390x.deb ... 120s Unpacking libfreetype6:s390x (2.14.1+dfsg-2) ... 120s Selecting previously unselected package fonts-dejavu-mono. 120s Preparing to unpack .../012-fonts-dejavu-mono_2.37-8build1_all.deb ... 120s Unpacking fonts-dejavu-mono (2.37-8build1) ... 120s Selecting previously unselected package fonts-dejavu-core. 120s Preparing to unpack .../013-fonts-dejavu-core_2.37-8build1_all.deb ... 120s Unpacking fonts-dejavu-core (2.37-8build1) ... 120s Selecting previously unselected package fontconfig-config. 120s Preparing to unpack .../014-fontconfig-config_2.15.0-2.4ubuntu1_s390x.deb ... 121s Unpacking fontconfig-config (2.15.0-2.4ubuntu1) ... 121s Selecting previously unselected package libfontconfig1:s390x. 121s Preparing to unpack .../015-libfontconfig1_2.15.0-2.4ubuntu1_s390x.deb ... 121s Unpacking libfontconfig1:s390x (2.15.0-2.4ubuntu1) ... 121s Selecting previously unselected package fontconfig. 121s Preparing to unpack .../016-fontconfig_2.15.0-2.4ubuntu1_s390x.deb ... 121s Unpacking fontconfig (2.15.0-2.4ubuntu1) ... 121s Selecting previously unselected package libgomp1:s390x. 121s Preparing to unpack .../017-libgomp1_15.2.0-11ubuntu1_s390x.deb ... 121s Unpacking libgomp1:s390x (15.2.0-11ubuntu1) ... 121s Selecting previously unselected package gettext. 121s Preparing to unpack .../018-gettext_0.23.2-1_s390x.deb ... 121s Unpacking gettext (0.23.2-1) ... 121s Selecting previously unselected package libcdt6:s390x. 121s Preparing to unpack .../019-libcdt6_14.1.1-2ubuntu2_s390x.deb ... 121s Unpacking libcdt6:s390x (14.1.1-2ubuntu2) ... 121s Selecting previously unselected package libcgraph8:s390x. 121s Preparing to unpack .../020-libcgraph8_14.1.1-2ubuntu2_s390x.deb ... 121s Unpacking libcgraph8:s390x (14.1.1-2ubuntu2) ... 121s Selecting previously unselected package libltdl7:s390x. 121s Preparing to unpack .../021-libltdl7_2.5.4-9_s390x.deb ... 121s Unpacking libltdl7:s390x (2.5.4-9) ... 121s Selecting previously unselected package libpathplan4:s390x. 121s Preparing to unpack .../022-libpathplan4_14.1.1-2ubuntu2_s390x.deb ... 121s Unpacking libpathplan4:s390x (14.1.1-2ubuntu2) ... 121s Selecting previously unselected package libxdot4:s390x. 121s Preparing to unpack .../023-libxdot4_14.1.1-2ubuntu2_s390x.deb ... 121s Unpacking libxdot4:s390x (14.1.1-2ubuntu2) ... 122s Selecting previously unselected package libgvc7:s390x. 122s Preparing to unpack .../024-libgvc7_14.1.1-2ubuntu2_s390x.deb ... 122s Unpacking libgvc7:s390x (14.1.1-2ubuntu2) ... 122s Selecting previously unselected package libgvpr2:s390x. 122s Preparing to unpack .../025-libgvpr2_14.1.1-2ubuntu2_s390x.deb ... 122s Unpacking libgvpr2:s390x (14.1.1-2ubuntu2) ... 122s Selecting previously unselected package libpixman-1-0:s390x. 122s Preparing to unpack .../026-libpixman-1-0_0.46.4-1_s390x.deb ... 122s Unpacking libpixman-1-0:s390x (0.46.4-1) ... 122s Selecting previously unselected package libxcb-render0:s390x. 122s Preparing to unpack .../027-libxcb-render0_1.17.0-2build1_s390x.deb ... 122s Unpacking libxcb-render0:s390x (1.17.0-2build1) ... 122s Selecting previously unselected package libxcb-shm0:s390x. 122s Preparing to unpack .../028-libxcb-shm0_1.17.0-2build1_s390x.deb ... 122s Unpacking libxcb-shm0:s390x (1.17.0-2build1) ... 122s Selecting previously unselected package libxrender1:s390x. 122s Preparing to unpack .../029-libxrender1_1%3a0.9.12-1_s390x.deb ... 122s Unpacking libxrender1:s390x (1:0.9.12-1) ... 122s Selecting previously unselected package libcairo2:s390x. 122s Preparing to unpack .../030-libcairo2_1.18.4-3_s390x.deb ... 122s Unpacking libcairo2:s390x (1.18.4-3) ... 122s Selecting previously unselected package libsharpyuv0:s390x. 122s Preparing to unpack .../031-libsharpyuv0_1.5.0-0.1build1_s390x.deb ... 122s Unpacking libsharpyuv0:s390x (1.5.0-0.1build1) ... 122s Selecting previously unselected package libaom3:s390x. 122s Preparing to unpack .../032-libaom3_3.13.1-2_s390x.deb ... 122s Unpacking libaom3:s390x (3.13.1-2) ... 122s Selecting previously unselected package libheif-plugin-aomdec:s390x. 122s Preparing to unpack .../033-libheif-plugin-aomdec_1.21.2-1_s390x.deb ... 122s Unpacking libheif-plugin-aomdec:s390x (1.21.2-1) ... 122s Selecting previously unselected package libde265-0:s390x. 122s Preparing to unpack .../034-libde265-0_1.0.16-1build1_s390x.deb ... 122s Unpacking libde265-0:s390x (1.0.16-1build1) ... 122s Selecting previously unselected package libheif-plugin-libde265:s390x. 122s Preparing to unpack .../035-libheif-plugin-libde265_1.21.2-1_s390x.deb ... 122s Unpacking libheif-plugin-libde265:s390x (1.21.2-1) ... 122s Selecting previously unselected package libheif1:s390x. 122s Preparing to unpack .../036-libheif1_1.21.2-1_s390x.deb ... 122s Unpacking libheif1:s390x (1.21.2-1) ... 123s Selecting previously unselected package libimagequant0:s390x. 123s Preparing to unpack .../037-libimagequant0_2.18.0-1build1_s390x.deb ... 123s Unpacking libimagequant0:s390x (2.18.0-1build1) ... 123s Selecting previously unselected package libjpeg-turbo8:s390x. 123s Preparing to unpack .../038-libjpeg-turbo8_2.1.5-4ubuntu2_s390x.deb ... 123s Unpacking libjpeg-turbo8:s390x (2.1.5-4ubuntu2) ... 123s Selecting previously unselected package libjpeg8:s390x. 123s Preparing to unpack .../039-libjpeg8_8c-2ubuntu11_s390x.deb ... 123s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 123s Selecting previously unselected package libdeflate0:s390x. 123s Preparing to unpack .../040-libdeflate0_1.23-2_s390x.deb ... 123s Unpacking libdeflate0:s390x (1.23-2) ... 123s Selecting previously unselected package libjbig0:s390x. 123s Preparing to unpack .../041-libjbig0_2.1-6.1ubuntu3_s390x.deb ... 123s Unpacking libjbig0:s390x (2.1-6.1ubuntu3) ... 123s Selecting previously unselected package libwebp7:s390x. 123s Preparing to unpack .../042-libwebp7_1.5.0-0.1build1_s390x.deb ... 123s Unpacking libwebp7:s390x (1.5.0-0.1build1) ... 123s Selecting previously unselected package libtiff6:s390x. 123s Preparing to unpack .../043-libtiff6_4.7.0-3ubuntu3_s390x.deb ... 123s Unpacking libtiff6:s390x (4.7.0-3ubuntu3) ... 123s Selecting previously unselected package libxpm4:s390x. 123s Preparing to unpack .../044-libxpm4_1%3a3.5.17-1build3_s390x.deb ... 123s Unpacking libxpm4:s390x (1:3.5.17-1build3) ... 123s Selecting previously unselected package libgd3:s390x. 123s Preparing to unpack .../045-libgd3_2.3.3-13ubuntu1_s390x.deb ... 123s Unpacking libgd3:s390x (2.3.3-13ubuntu1) ... 123s Selecting previously unselected package libgvplugin-gd8:s390x. 123s Preparing to unpack .../046-libgvplugin-gd8_14.1.1-2ubuntu2_s390x.deb ... 123s Unpacking libgvplugin-gd8:s390x (14.1.1-2ubuntu2) ... 123s Selecting previously unselected package libgraphite2-3:s390x. 123s Preparing to unpack .../047-libgraphite2-3_1.3.14-11ubuntu1_s390x.deb ... 123s Unpacking libgraphite2-3:s390x (1.3.14-11ubuntu1) ... 123s Selecting previously unselected package libharfbuzz0b:s390x. 123s Preparing to unpack .../048-libharfbuzz0b_12.3.0-4_s390x.deb ... 123s Unpacking libharfbuzz0b:s390x (12.3.0-4) ... 123s Selecting previously unselected package libthai-data. 123s Preparing to unpack .../049-libthai-data_0.1.30-1_all.deb ... 123s Unpacking libthai-data (0.1.30-1) ... 123s Selecting previously unselected package libdatrie1:s390x. 123s Preparing to unpack .../050-libdatrie1_0.2.14-1_s390x.deb ... 123s Unpacking libdatrie1:s390x (0.2.14-1) ... 123s Selecting previously unselected package libthai0:s390x. 123s Preparing to unpack .../051-libthai0_0.1.30-1_s390x.deb ... 123s Unpacking libthai0:s390x (0.1.30-1) ... 124s Selecting previously unselected package libpango-1.0-0:s390x. 124s Preparing to unpack .../052-libpango-1.0-0_1.56.4-1_s390x.deb ... 124s Unpacking libpango-1.0-0:s390x (1.56.4-1) ... 124s Selecting previously unselected package libpangoft2-1.0-0:s390x. 124s Preparing to unpack .../053-libpangoft2-1.0-0_1.56.4-1_s390x.deb ... 124s Unpacking libpangoft2-1.0-0:s390x (1.56.4-1) ... 124s Selecting previously unselected package libpangocairo-1.0-0:s390x. 124s Preparing to unpack .../054-libpangocairo-1.0-0_1.56.4-1_s390x.deb ... 124s Unpacking libpangocairo-1.0-0:s390x (1.56.4-1) ... 124s Selecting previously unselected package libgvplugin-pango8:s390x. 124s Preparing to unpack .../055-libgvplugin-pango8_14.1.1-2ubuntu2_s390x.deb ... 124s Unpacking libgvplugin-pango8:s390x (14.1.1-2ubuntu2) ... 124s Selecting previously unselected package graphviz. 124s Preparing to unpack .../056-graphviz_14.1.1-2ubuntu2_s390x.deb ... 124s Unpacking graphviz (14.1.1-2ubuntu2) ... 124s Selecting previously unselected package libaec0:s390x. 124s Preparing to unpack .../057-libaec0_1.1.4-2_s390x.deb ... 124s Unpacking libaec0:s390x (1.1.4-2) ... 124s Selecting previously unselected package libsz2:s390x. 124s Preparing to unpack .../058-libsz2_1.1.4-2_s390x.deb ... 124s Unpacking libsz2:s390x (1.1.4-2) ... 124s Selecting previously unselected package libhdf5-310:s390x. 124s Preparing to unpack .../059-libhdf5-310_1.14.5+repack-4_s390x.deb ... 124s Unpacking libhdf5-310:s390x (1.14.5+repack-4) ... 125s Selecting previously unselected package libhdf5-hl-310:s390x. 125s Preparing to unpack .../060-libhdf5-hl-310_1.14.5+repack-4_s390x.deb ... 125s Unpacking libhdf5-hl-310:s390x (1.14.5+repack-4) ... 125s Selecting previously unselected package libjs-jquery. 125s Preparing to unpack .../061-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 125s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 125s Selecting previously unselected package libjs-underscore. 125s Preparing to unpack .../062-libjs-underscore_1.13.7~dfsg+~1.13.0-1_all.deb ... 125s Unpacking libjs-underscore (1.13.7~dfsg+~1.13.0-1) ... 125s Selecting previously unselected package libjson-perl. 125s Preparing to unpack .../063-libjson-perl_4.10000-1_all.deb ... 125s Unpacking libjson-perl (4.10000-1) ... 125s Selecting previously unselected package liblzf1:s390x. 125s Preparing to unpack .../064-liblzf1_3.6-4build1_s390x.deb ... 125s Unpacking liblzf1:s390x (3.6-4build1) ... 125s Selecting previously unselected package libqhull-r8.0:s390x. 125s Preparing to unpack .../065-libqhull-r8.0_2020.2-8_s390x.deb ... 125s Unpacking libqhull-r8.0:s390x (2020.2-8) ... 125s Selecting previously unselected package libxslt1.1:s390x. 125s Preparing to unpack .../066-libxslt1.1_1.1.43-0.3_s390x.deb ... 125s Unpacking libxslt1.1:s390x (1.1.43-0.3) ... 125s Selecting previously unselected package python-nipype-doc. 125s Preparing to unpack .../067-python-nipype-doc_1.10.0-1_all.deb ... 125s Unpacking python-nipype-doc (1.10.0-1) ... 125s Selecting previously unselected package python3-acres. 125s Preparing to unpack .../068-python3-acres_0.5.0-2_all.deb ... 125s Unpacking python3-acres (0.5.0-2) ... 125s Selecting previously unselected package python3-all. 125s Preparing to unpack .../069-python3-all_3.14.2-1_s390x.deb ... 125s Unpacking python3-all (3.14.2-1) ... 125s Selecting previously unselected package python3-ci-info. 125s Preparing to unpack .../070-python3-ci-info_0.3.0-1build1_all.deb ... 125s Unpacking python3-ci-info (0.3.0-1build1) ... 125s Selecting previously unselected package python3-click. 125s Preparing to unpack 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Setting up libfreetype6:s390x (2.14.1+dfsg-2) ... 152s Setting up python3-orderly-set (5.5.0-2) ... 153s Setting up python3-snowballstemmer (3.0.1-1) ... 154s Setting up libpathplan4:s390x (14.1.1-2ubuntu2) ... 154s Setting up liblzf1:s390x (3.6-4build1) ... 154s Setting up diffstat (1.68-1) ... 154s Setting up libimagequant0:s390x (2.18.0-1build1) ... 154s Setting up fonts-dejavu-mono (2.37-8build1) ... 154s Setting up python3-numpy-dev:s390x (1:2.3.5+ds-3) ... 154s Setting up fonts-dejavu-core (2.37-8build1) ... 154s Setting up libjpeg-turbo8:s390x (2.1.5-4ubuntu2) ... 154s Setting up libltdl7:s390x (2.5.4-9) ... 154s Setting up libgfortran5:s390x (15.2.0-11ubuntu1) ... 154s Setting up python3-ci-info (0.3.0-1build1) ... 154s Setting up python3-pluggy (1.6.0-2) ... 155s Setting up libcgraph8:s390x (14.1.1-2ubuntu2) ... 155s Setting up libwebp7:s390x (1.5.0-0.1build1) ... 155s Setting up libgvpr2:s390x (14.1.1-2ubuntu2) ... 155s Setting up python3-looseversion (1.3.0-3build1) ... 155s Setting up python3-rdflib (7.1.1-3) ... 157s Setting up libjson-perl (4.10000-1) ... 157s Setting up libxslt1.1:s390x (1.1.43-0.3) ... 157s Setting up python3-roman-numerals (4.1.0-1) ... 157s Setting up python3.13-minimal (3.13.11-1) ... 158s Setting up libharfbuzz0b:s390x (12.3.0-4) ... 158s Setting up libthai-data (0.1.30-1) ... 158s Setting up sgml-base (1.31+nmu1) ... 158s Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 158s Setting up libde265-0:s390x (1.0.16-1build1) ... 158s Setting up python3-execnet (2.1.1-1build1) ... 159s Setting up libsz2:s390x (1.1.4-2) ... 159s Setting up libjs-underscore (1.13.7~dfsg+~1.13.0-1) ... 159s Setting up python3-imagesize (1.4.1-1build1) ... 159s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 159s Setting up liblapack3:s390x (3.12.1-7ubuntu1) ... 159s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 159s Setting up gettext (0.23.2-1) ... 159s Setting up python3.13 (3.13.11-1) ... 163s Setting up fontconfig-config (2.15.0-2.4ubuntu1) ... 164s Setting up python3-pytest (9.0.2-2) ... 166s Setting up python3-all (3.14.2-1) ... 166s Setting up quilt (0.68-1) ... 166s Setting up python3-etelemetry (0.3.1-1build1) ... 166s Setting up libthai0:s390x (0.1.30-1) ... 166s Setting up python-nipype-doc (1.10.0-1) ... 166s Setting up sphinx-common (8.2.3-12) ... 166s Setting up python3-numpy (1:2.3.5+ds-3) ... 178s Setting up libgvc7:s390x (14.1.1-2ubuntu2) ... 178s Setting up libhdf5-310:s390x (1.14.5+repack-4) ... 178s Setting up python3-lxml:s390x (6.0.2-1) ... 179s Setting up libtiff6:s390x (4.7.0-3ubuntu3) ... 179s Setting up xml-core (0.19build1) ... 180s Setting up libfontconfig1:s390x (2.15.0-2.4ubuntu1) ... 180s Setting up libhdf5-hl-310:s390x (1.14.5+repack-4) ... 180s Setting up fontconfig (2.15.0-2.4ubuntu1) ... 182s Regenerating fonts cache... done. 182s Setting up python3-deepdiff (8.6.1-1) ... 182s Setting up python3-scipy (1.16.3-3) ... 205s Setting up python3-pytest-xdist (3.8.0-4) ... 206s Setting up python3-pandas-lib:s390x (2.3.3+dfsg-3) ... 206s Setting up libpango-1.0-0:s390x (1.56.4-1) ... 206s Setting up python3-h5py-serial (3.15.1-4) ... 207s Setting up libcairo2:s390x (1.18.4-3) ... 207s Setting up python3-dipy-lib:s390x (1.11.0-3) ... 207s Setting up python3-pandas (2.3.3+dfsg-3) ... 236s Setting up python3-nibabel (5.3.3-1) ... 241s Setting up python3-h5py (3.15.1-4) ... 242s Setting up libpangoft2-1.0-0:s390x (1.56.4-1) ... 242s Setting up libpangocairo-1.0-0:s390x (1.56.4-1) ... 242s Setting up python3-trx-python (0.3-2) ... 242s Setting up libgvplugin-pango8:s390x (14.1.1-2ubuntu2) ... 242s Setting up python3-dipy (1.11.0-3) ... 248s Setting up libheif-plugin-aomdec:s390x (1.21.2-1) ... 248s Setting up libheif-plugin-libde265:s390x (1.21.2-1) ... 248s Setting up libheif1:s390x (1.21.2-1) ... 248s Setting up libgd3:s390x (2.3.3-13ubuntu1) ... 248s Setting up libgvplugin-gd8:s390x (14.1.1-2ubuntu2) ... 248s Setting up graphviz (14.1.1-2ubuntu2) ... 248s Setting up python3-pydot (4.0.1-1) ... 248s Setting up python3-prov (2.1.1-1) ... 249s Setting up python3-nipype (1.10.0-1) ... 257s Processing triggers for systemd (259-1ubuntu2) ... 257s Processing triggers for man-db (2.13.1-1) ... 259s Processing triggers for install-info (7.2-5) ... 259s Processing triggers for libc-bin (2.42-2ubuntu4) ... 259s Processing triggers for sgml-base (1.31+nmu1) ... 259s Setting up docutils-common (0.22.4+dfsg-1) ... 260s Processing triggers for sgml-base (1.31+nmu1) ... 260s Setting up python3-docutils (0.22.4+dfsg-1) ... 263s Setting up python3-sphinx (8.2.3-12) ... 270s autopkgtest [09:56:46]: test run-unit-test: [----------------------- 270s File series fully applied, ends at patch debian/patches/stabilize-makefiles.patch 270s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 270s Skip following Tests: not nipype.interfaces.io.BIDSDataGrabber and not nipype.interfaces.mixins.fixheader.CopyHeaderInterface 271s Testing with python3.13 in /tmp/autopkgtest.ALkHf7/autopkgtest_tmp: 272s ============================= test session starts ============================== 272s platform linux -- Python 3.13.11, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3.13 272s cachedir: .pytest_cache 272s rootdir: /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype 272s configfile: pytest.ini 272s plugins: typeguard-4.4.4, xdist-3.8.0 294s collecting ... collected 3014 items / 2 deselected / 3012 selected 294s 294s nipype/algorithms/confounds.py::nipype.algorithms.confounds.CompCor PASSED [ 0%] 294s nipype/algorithms/confounds.py::nipype.algorithms.confounds.TCompCor PASSED [ 0%] 294s nipype/algorithms/confounds.py::nipype.algorithms.confounds.TSNR PASSED [ 0%] 294s nipype/algorithms/metrics.py::nipype.algorithms.metrics.ErrorMap PASSED [ 0%] 294s 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nipype/interfaces/fsl/tests/test_auto_FindTheBiggest.py::test_FindTheBiggest_outputs PASSED [ 44%] 318s nipype/interfaces/fsl/tests/test_auto_GLM.py::test_GLM_inputs PASSED [ 44%] 318s nipype/interfaces/fsl/tests/test_auto_GLM.py::test_GLM_outputs PASSED [ 44%] 318s nipype/interfaces/fsl/tests/test_auto_ICA_AROMA.py::test_ICA_AROMA_inputs PASSED [ 44%] 318s nipype/interfaces/fsl/tests/test_auto_ICA_AROMA.py::test_ICA_AROMA_outputs PASSED [ 44%] 318s nipype/interfaces/fsl/tests/test_auto_ImageMaths.py::test_ImageMaths_inputs PASSED [ 44%] 318s nipype/interfaces/fsl/tests/test_auto_ImageMaths.py::test_ImageMaths_outputs PASSED [ 44%] 318s nipype/interfaces/fsl/tests/test_auto_ImageMeants.py::test_ImageMeants_inputs PASSED [ 44%] 318s nipype/interfaces/fsl/tests/test_auto_ImageMeants.py::test_ImageMeants_outputs PASSED [ 44%] 318s nipype/interfaces/fsl/tests/test_auto_ImageStats.py::test_ImageStats_inputs PASSED [ 44%] 318s nipype/interfaces/fsl/tests/test_auto_ImageStats.py::test_ImageStats_outputs PASSED [ 44%] 318s nipype/interfaces/fsl/tests/test_auto_InvWarp.py::test_InvWarp_inputs PASSED [ 44%] 318s nipype/interfaces/fsl/tests/test_auto_InvWarp.py::test_InvWarp_outputs PASSED [ 44%] 318s nipype/interfaces/fsl/tests/test_auto_IsotropicSmooth.py::test_IsotropicSmooth_inputs PASSED [ 44%] 318s nipype/interfaces/fsl/tests/test_auto_IsotropicSmooth.py::test_IsotropicSmooth_outputs PASSED [ 44%] 318s nipype/interfaces/fsl/tests/test_auto_L2Model.py::test_L2Model_inputs PASSED [ 44%] 318s nipype/interfaces/fsl/tests/test_auto_L2Model.py::test_L2Model_outputs PASSED [ 44%] 318s nipype/interfaces/fsl/tests/test_auto_Level1Design.py::test_Level1Design_inputs PASSED [ 44%] 318s nipype/interfaces/fsl/tests/test_auto_Level1Design.py::test_Level1Design_outputs PASSED [ 44%] 318s nipype/interfaces/fsl/tests/test_auto_MCFLIRT.py::test_MCFLIRT_inputs PASSED [ 44%] 318s nipype/interfaces/fsl/tests/test_auto_MCFLIRT.py::test_MCFLIRT_outputs PASSED [ 44%] 318s nipype/interfaces/fsl/tests/test_auto_MELODIC.py::test_MELODIC_inputs PASSED [ 44%] 318s nipype/interfaces/fsl/tests/test_auto_MELODIC.py::test_MELODIC_outputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_MakeDyadicVectors.py::test_MakeDyadicVectors_inputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_MakeDyadicVectors.py::test_MakeDyadicVectors_outputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_MathsCommand.py::test_MathsCommand_inputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_MathsCommand.py::test_MathsCommand_outputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_MaxImage.py::test_MaxImage_inputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_MaxImage.py::test_MaxImage_outputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_MaxnImage.py::test_MaxnImage_inputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_MaxnImage.py::test_MaxnImage_outputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_MeanImage.py::test_MeanImage_inputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_MeanImage.py::test_MeanImage_outputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_MedianImage.py::test_MedianImage_inputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_MedianImage.py::test_MedianImage_outputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_Merge.py::test_Merge_inputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_Merge.py::test_Merge_outputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_MinImage.py::test_MinImage_inputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_MinImage.py::test_MinImage_outputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_MotionOutliers.py::test_MotionOutliers_inputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_MotionOutliers.py::test_MotionOutliers_outputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_MultiImageMaths.py::test_MultiImageMaths_inputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_MultiImageMaths.py::test_MultiImageMaths_outputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_MultipleRegressDesign.py::test_MultipleRegressDesign_inputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_MultipleRegressDesign.py::test_MultipleRegressDesign_outputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_Overlay.py::test_Overlay_inputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_Overlay.py::test_Overlay_outputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_PRELUDE.py::test_PRELUDE_inputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_PRELUDE.py::test_PRELUDE_outputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_PercentileImage.py::test_PercentileImage_inputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_PercentileImage.py::test_PercentileImage_outputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_PlotMotionParams.py::test_PlotMotionParams_inputs PASSED [ 45%] 318s nipype/interfaces/fsl/tests/test_auto_PlotMotionParams.py::test_PlotMotionParams_outputs PASSED [ 46%] 318s nipype/interfaces/fsl/tests/test_auto_PlotTimeSeries.py::test_PlotTimeSeries_inputs PASSED [ 46%] 318s nipype/interfaces/fsl/tests/test_auto_PlotTimeSeries.py::test_PlotTimeSeries_outputs PASSED [ 46%] 318s nipype/interfaces/fsl/tests/test_auto_PowerSpectrum.py::test_PowerSpectrum_inputs PASSED [ 46%] 318s nipype/interfaces/fsl/tests/test_auto_PowerSpectrum.py::test_PowerSpectrum_outputs PASSED [ 46%] 318s nipype/interfaces/fsl/tests/test_auto_PrepareFieldmap.py::test_PrepareFieldmap_inputs PASSED [ 46%] 318s nipype/interfaces/fsl/tests/test_auto_PrepareFieldmap.py::test_PrepareFieldmap_outputs PASSED [ 46%] 318s nipype/interfaces/fsl/tests/test_auto_ProbTrackX.py::test_ProbTrackX_inputs PASSED [ 46%] 318s nipype/interfaces/fsl/tests/test_auto_ProbTrackX.py::test_ProbTrackX_outputs PASSED [ 46%] 318s nipype/interfaces/fsl/tests/test_auto_ProbTrackX2.py::test_ProbTrackX2_inputs PASSED [ 46%] 318s nipype/interfaces/fsl/tests/test_auto_ProbTrackX2.py::test_ProbTrackX2_outputs PASSED [ 46%] 318s nipype/interfaces/fsl/tests/test_auto_ProjThresh.py::test_ProjThresh_inputs PASSED [ 46%] 318s nipype/interfaces/fsl/tests/test_auto_ProjThresh.py::test_ProjThresh_outputs PASSED [ 46%] 318s nipype/interfaces/fsl/tests/test_auto_Randomise.py::test_Randomise_inputs PASSED [ 46%] 318s nipype/interfaces/fsl/tests/test_auto_Randomise.py::test_Randomise_outputs PASSED [ 46%] 318s nipype/interfaces/fsl/tests/test_auto_Reorient2Std.py::test_Reorient2Std_inputs PASSED [ 46%] 318s nipype/interfaces/fsl/tests/test_auto_Reorient2Std.py::test_Reorient2Std_outputs PASSED [ 46%] 318s nipype/interfaces/fsl/tests/test_auto_RobustFOV.py::test_RobustFOV_inputs PASSED [ 46%] 318s nipype/interfaces/fsl/tests/test_auto_RobustFOV.py::test_RobustFOV_outputs PASSED [ 46%] 318s nipype/interfaces/fsl/tests/test_auto_SMM.py::test_SMM_inputs PASSED [ 46%] 318s nipype/interfaces/fsl/tests/test_auto_SMM.py::test_SMM_outputs PASSED [ 46%] 318s nipype/interfaces/fsl/tests/test_auto_SUSAN.py::test_SUSAN_inputs PASSED [ 46%] 318s nipype/interfaces/fsl/tests/test_auto_SUSAN.py::test_SUSAN_outputs PASSED [ 46%] 318s nipype/interfaces/fsl/tests/test_auto_SigLoss.py::test_SigLoss_inputs PASSED [ 46%] 318s nipype/interfaces/fsl/tests/test_auto_SigLoss.py::test_SigLoss_outputs PASSED [ 46%] 318s nipype/interfaces/fsl/tests/test_auto_Slice.py::test_Slice_inputs PASSED [ 46%] 318s nipype/interfaces/fsl/tests/test_auto_Slice.py::test_Slice_outputs PASSED [ 46%] 318s nipype/interfaces/fsl/tests/test_auto_SliceTimer.py::test_SliceTimer_inputs PASSED [ 46%] 318s 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nipype/interfaces/fsl/tests/test_auto_Split.py::test_Split_outputs PASSED [ 47%] 318s nipype/interfaces/fsl/tests/test_auto_StdImage.py::test_StdImage_inputs PASSED [ 47%] 318s nipype/interfaces/fsl/tests/test_auto_StdImage.py::test_StdImage_outputs PASSED [ 47%] 318s nipype/interfaces/fsl/tests/test_auto_SwapDimensions.py::test_SwapDimensions_inputs PASSED [ 47%] 318s nipype/interfaces/fsl/tests/test_auto_SwapDimensions.py::test_SwapDimensions_outputs PASSED [ 47%] 318s nipype/interfaces/fsl/tests/test_auto_TOPUP.py::test_TOPUP_inputs PASSED [ 47%] 318s nipype/interfaces/fsl/tests/test_auto_TOPUP.py::test_TOPUP_outputs PASSED [ 47%] 318s nipype/interfaces/fsl/tests/test_auto_TemporalFilter.py::test_TemporalFilter_inputs PASSED [ 47%] 318s nipype/interfaces/fsl/tests/test_auto_TemporalFilter.py::test_TemporalFilter_outputs PASSED [ 47%] 318s nipype/interfaces/fsl/tests/test_auto_Text2Vest.py::test_Text2Vest_inputs PASSED [ 47%] 318s nipype/interfaces/fsl/tests/test_auto_Text2Vest.py::test_Text2Vest_outputs PASSED [ 47%] 318s nipype/interfaces/fsl/tests/test_auto_Threshold.py::test_Threshold_inputs PASSED [ 47%] 318s nipype/interfaces/fsl/tests/test_auto_Threshold.py::test_Threshold_outputs PASSED [ 47%] 318s nipype/interfaces/fsl/tests/test_auto_TractSkeleton.py::test_TractSkeleton_inputs PASSED [ 47%] 318s nipype/interfaces/fsl/tests/test_auto_TractSkeleton.py::test_TractSkeleton_outputs PASSED [ 47%] 318s nipype/interfaces/fsl/tests/test_auto_Training.py::test_Training_inputs PASSED [ 47%] 318s nipype/interfaces/fsl/tests/test_auto_Training.py::test_Training_outputs PASSED [ 47%] 318s nipype/interfaces/fsl/tests/test_auto_TrainingSetCreator.py::test_TrainingSetCreator_inputs PASSED [ 47%] 318s nipype/interfaces/fsl/tests/test_auto_TrainingSetCreator.py::test_TrainingSetCreator_outputs PASSED [ 47%] 318s nipype/interfaces/fsl/tests/test_auto_UnaryMaths.py::test_UnaryMaths_inputs PASSED [ 47%] 318s nipype/interfaces/fsl/tests/test_auto_UnaryMaths.py::test_UnaryMaths_outputs PASSED [ 47%] 318s nipype/interfaces/fsl/tests/test_auto_VecReg.py::test_VecReg_inputs PASSED [ 47%] 318s nipype/interfaces/fsl/tests/test_auto_VecReg.py::test_VecReg_outputs PASSED [ 48%] 318s nipype/interfaces/fsl/tests/test_auto_Vest2Text.py::test_Vest2Text_inputs PASSED [ 48%] 318s nipype/interfaces/fsl/tests/test_auto_Vest2Text.py::test_Vest2Text_outputs PASSED [ 48%] 318s nipype/interfaces/fsl/tests/test_auto_WarpPoints.py::test_WarpPoints_inputs PASSED [ 48%] 318s nipype/interfaces/fsl/tests/test_auto_WarpPoints.py::test_WarpPoints_outputs PASSED [ 48%] 318s nipype/interfaces/fsl/tests/test_auto_WarpPointsFromStd.py::test_WarpPointsFromStd_inputs PASSED [ 48%] 318s nipype/interfaces/fsl/tests/test_auto_WarpPointsFromStd.py::test_WarpPointsFromStd_outputs PASSED [ 48%] 318s nipype/interfaces/fsl/tests/test_auto_WarpPointsToStd.py::test_WarpPointsToStd_inputs PASSED [ 48%] 318s nipype/interfaces/fsl/tests/test_auto_WarpPointsToStd.py::test_WarpPointsToStd_outputs PASSED [ 48%] 318s nipype/interfaces/fsl/tests/test_auto_WarpUtils.py::test_WarpUtils_inputs PASSED [ 48%] 318s nipype/interfaces/fsl/tests/test_auto_WarpUtils.py::test_WarpUtils_outputs PASSED [ 48%] 318s nipype/interfaces/fsl/tests/test_auto_XFibres5.py::test_XFibres5_inputs PASSED [ 48%] 318s nipype/interfaces/fsl/tests/test_auto_XFibres5.py::test_XFibres5_outputs PASSED [ 48%] 318s nipype/interfaces/fsl/tests/test_base.py::test_fslversion SKIPPED (f...) [ 48%] 318s nipype/interfaces/fsl/tests/test_base.py::test_fsloutputtype SKIPPED [ 48%] 318s nipype/interfaces/fsl/tests/test_base.py::test_outputtype_to_ext PASSED [ 48%] 318s nipype/interfaces/fsl/tests/test_base.py::test_FSLCommand SKIPPED (f...) [ 48%] 318s nipype/interfaces/fsl/tests/test_base.py::test_FSLCommand2 SKIPPED (...) [ 48%] 318s nipype/interfaces/fsl/tests/test_base.py::test_gen_fname[args0-desired_name0] SKIPPED [ 48%] 318s nipype/interfaces/fsl/tests/test_base.py::test_gen_fname[args1-desired_name1] SKIPPED [ 48%] 318s nipype/interfaces/fsl/tests/test_base.py::test_gen_fname[args2-desired_name2] SKIPPED [ 48%] 318s nipype/interfaces/fsl/tests/test_base.py::test_gen_fname[args3-desired_name3] SKIPPED [ 48%] 318s nipype/interfaces/fsl/tests/test_dti.py::test_dtifit2 SKIPPED (fsl i...) [ 48%] 318s nipype/interfaces/fsl/tests/test_dti.py::test_randomise2 XFAIL (Thes...) [ 48%] 318s nipype/interfaces/fsl/tests/test_dti.py::test_Randomise_parallel XFAIL [ 48%] 318s nipype/interfaces/fsl/tests/test_dti.py::test_Proj_thresh XFAIL (The...) [ 48%] 318s nipype/interfaces/fsl/tests/test_dti.py::test_Vec_reg XFAIL (These t...) [ 48%] 318s nipype/interfaces/fsl/tests/test_dti.py::test_Find_the_biggest XFAIL [ 48%] 318s nipype/interfaces/fsl/tests/test_dti.py::test_tbss_skeleton SKIPPED [ 48%] 318s nipype/interfaces/fsl/tests/test_dti.py::test_distancemap SKIPPED (f...) [ 48%] 318s nipype/interfaces/fsl/tests/test_epi.py::test_eddy_correct2 SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[None] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[GIFTI] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[NIFTI] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[NIFTI_GZ] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[NIFTI_PAIR] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[NIFTI_PAIR_GZ] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[None] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[GIFTI] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[NIFTI] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[NIFTI_GZ] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[NIFTI_PAIR] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[NIFTI_PAIR_GZ] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[None] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[GIFTI] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[NIFTI] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[NIFTI_GZ] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[NIFTI_PAIR] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[NIFTI_PAIR_GZ] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[None] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[GIFTI] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[NIFTI] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[NIFTI_GZ] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[NIFTI_PAIR] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[NIFTI_PAIR_GZ] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[None] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[GIFTI] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[NIFTI] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[NIFTI_GZ] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[NIFTI_PAIR] SKIPPED [ 49%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[NIFTI_PAIR_GZ] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[None] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[GIFTI] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[NIFTI] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[NIFTI_GZ] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[NIFTI_PAIR] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[NIFTI_PAIR_GZ] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[None] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[GIFTI] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[NIFTI] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[NIFTI_GZ] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[NIFTI_PAIR] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[NIFTI_PAIR_GZ] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_mask[None] SKIPPED (...) [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_mask[GIFTI] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_mask[NIFTI] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_mask[NIFTI_GZ] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_mask[NIFTI_PAIR] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_mask[NIFTI_PAIR_GZ] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[None] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[GIFTI] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[NIFTI] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[NIFTI_GZ] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[NIFTI_PAIR] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[NIFTI_PAIR_GZ] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[None] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[GIFTI] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[NIFTI] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[NIFTI_GZ] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[NIFTI_PAIR] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[NIFTI_PAIR_GZ] SKIPPED [ 50%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[None] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[GIFTI] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[NIFTI] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[NIFTI_GZ] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[NIFTI_PAIR] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[NIFTI_PAIR_GZ] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[None] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[GIFTI] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[NIFTI] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[NIFTI_GZ] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[NIFTI_PAIR] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[NIFTI_PAIR_GZ] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[None] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[GIFTI] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[NIFTI] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[NIFTI_GZ] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[NIFTI_PAIR] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[NIFTI_PAIR_GZ] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[None] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[GIFTI] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[NIFTI] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[NIFTI_GZ] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[NIFTI_PAIR] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[NIFTI_PAIR_GZ] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[None] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[GIFTI] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[NIFTI] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[NIFTI_GZ] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[NIFTI_PAIR] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[NIFTI_PAIR_GZ] SKIPPED [ 51%] 318s nipype/interfaces/fsl/tests/test_model.py::test_MultipleRegressDesign SKIPPED [ 52%] 318s nipype/interfaces/fsl/tests/test_preprocess.py::test_bet SKIPPED (fs...) [ 52%] 318s nipype/interfaces/fsl/tests/test_preprocess.py::test_fast SKIPPED (f...) [ 52%] 318s nipype/interfaces/fsl/tests/test_preprocess.py::test_fast_list_outputs SKIPPED [ 52%] 318s nipype/interfaces/fsl/tests/test_preprocess.py::test_flirt SKIPPED (...) [ 52%] 318s nipype/interfaces/fsl/tests/test_preprocess.py::test_mcflirt SKIPPED [ 52%] 318s nipype/interfaces/fsl/tests/test_preprocess.py::test_mcflirt_opt SKIPPED [ 52%] 318s nipype/interfaces/fsl/tests/test_preprocess.py::test_mcflirt_noinput SKIPPED [ 52%] 318s nipype/interfaces/fsl/tests/test_preprocess.py::test_fnirt SKIPPED (...) [ 52%] 318s nipype/interfaces/fsl/tests/test_preprocess.py::test_applywarp SKIPPED [ 52%] 318s nipype/interfaces/fsl/tests/test_preprocess.py::test_fugue[attr0-fmap_out_file] SKIPPED [ 52%] 318s nipype/interfaces/fsl/tests/test_preprocess.py::test_fugue[attr1-shift_out_file] SKIPPED [ 52%] 318s nipype/interfaces/fsl/tests/test_preprocess.py::test_fugue[attr2-unwarped_file] SKIPPED [ 52%] 318s nipype/interfaces/fsl/tests/test_preprocess.py::test_first_genfname SKIPPED [ 52%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[None] SKIPPED [ 52%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[GIFTI] SKIPPED [ 52%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[NIFTI] SKIPPED [ 52%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[NIFTI_GZ] SKIPPED [ 52%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[NIFTI_PAIR] SKIPPED [ 52%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[NIFTI_PAIR_GZ] SKIPPED [ 52%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_fslmerge[None] SKIPPED [ 52%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_fslmerge[GIFTI] SKIPPED [ 52%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_fslmerge[NIFTI] SKIPPED [ 52%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_fslmerge[NIFTI_GZ] SKIPPED [ 52%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_fslmerge[NIFTI_PAIR] SKIPPED [ 52%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_fslmerge[NIFTI_PAIR_GZ] SKIPPED [ 52%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_fslmaths[None] SKIPPED [ 52%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_fslmaths[GIFTI] SKIPPED [ 52%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_fslmaths[NIFTI] SKIPPED [ 52%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_fslmaths[NIFTI_GZ] SKIPPED [ 52%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_fslmaths[NIFTI_PAIR] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_fslmaths[NIFTI_PAIR_GZ] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_overlay[None] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_overlay[GIFTI] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_overlay[NIFTI] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_overlay[NIFTI_GZ] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_overlay[NIFTI_PAIR] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_overlay[NIFTI_PAIR_GZ] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_slicer[None] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_slicer[GIFTI] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_slicer[NIFTI] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_slicer[NIFTI_GZ] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_slicer[NIFTI_PAIR] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_slicer[NIFTI_PAIR_GZ] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_plottimeseries[None] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_plottimeseries[GIFTI] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_plottimeseries[NIFTI] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_plottimeseries[NIFTI_GZ] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_plottimeseries[NIFTI_PAIR] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_plottimeseries[NIFTI_PAIR_GZ] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_plotmotionparams[None] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_plotmotionparams[GIFTI] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_plotmotionparams[NIFTI] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_plotmotionparams[NIFTI_GZ] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_plotmotionparams[NIFTI_PAIR] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_plotmotionparams[NIFTI_PAIR_GZ] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_convertxfm[None] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_convertxfm[GIFTI] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_convertxfm[NIFTI] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_convertxfm[NIFTI_GZ] SKIPPED [ 53%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_convertxfm[NIFTI_PAIR] SKIPPED [ 54%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_convertxfm[NIFTI_PAIR_GZ] SKIPPED [ 54%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_swapdims[None] SKIPPED [ 54%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_swapdims[GIFTI] SKIPPED [ 54%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_swapdims[NIFTI] SKIPPED [ 54%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_swapdims[NIFTI_GZ] SKIPPED [ 54%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_swapdims[NIFTI_PAIR] SKIPPED [ 54%] 318s nipype/interfaces/fsl/tests/test_utils.py::test_swapdims[NIFTI_PAIR_GZ] SKIPPED [ 54%] 318s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.AvScale PASSED [ 54%] 318s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.Complex PASSED [ 54%] 318s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.ConvertWarp PASSED [ 54%] 318s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.ConvertXFM PASSED [ 54%] 318s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.ExtractROI PASSED [ 54%] 318s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.ImageMaths PASSED [ 54%] 318s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.ImageStats PASSED [ 54%] 318s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.InvWarp PASSED [ 54%] 318s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.Merge PASSED [ 54%] 318s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.MotionOutliers PASSED [ 54%] 319s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.Overlay PASSED [ 54%] 319s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.PlotMotionParams PASSED [ 54%] 319s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.PlotTimeSeries PASSED [ 54%] 319s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.PowerSpectrum PASSED [ 54%] 319s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.Reorient2Std PASSED [ 54%] 319s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.SigLoss PASSED [ 54%] 319s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.Slice PASSED [ 54%] 319s nipype/interfaces/fsl/utils.py::nipype.interfaces.fsl.utils.Slicer PASSED [ 54%] 319s 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[ 95%] 448s nipype/testing/tests/test_utils.py::test_tempfatfs_calledprocesserror PASSED [ 95%] 448s nipype/testing/tests/test_utils.py::test_tempfatfs_oserror PASSED [ 95%] 448s nipype/tests/test_nipype.py::test_nipype_info PASSED [ 95%] 448s nipype/tests/test_nipype.py::test_git_hash SKIPPED (not able to get ...) [ 95%] 448s nipype/tests/test_nipype.py::test_no_et_bare PASSED [ 96%] 450s nipype/tests/test_nipype.py::test_no_et_multiproc[True-MultiProc] PASSED [ 96%] 452s nipype/tests/test_nipype.py::test_no_et_multiproc[True-LegacyMultiProc] PASSED [ 96%] 456s nipype/tests/test_nipype.py::test_no_et_multiproc[False-MultiProc] PASSED [ 96%] 460s nipype/tests/test_nipype.py::test_no_et_multiproc[False-LegacyMultiProc] PASSED [ 96%] 460s nipype/tests/test_sample.py::test_basic PASSED [ 96%] 460s nipype/utils/docparse.py::nipype.utils.docparse.insert_doc PASSED [ 96%] 460s nipype/utils/filemanip.py::nipype.utils.filemanip.fname_presuffix PASSED [ 96%] 460s nipype/utils/filemanip.py::nipype.utils.filemanip.hash_infile PASSED [ 96%] 460s nipype/utils/filemanip.py::nipype.utils.filemanip.read_stream PASSED [ 96%] 460s nipype/utils/filemanip.py::nipype.utils.filemanip.split_filename PASSED [ 96%] 460s nipype/utils/matlabtools.py::nipype.utils.matlabtools.mlab_tempfile PASSED [ 96%] 460s nipype/utils/misc.py::nipype.utils.misc.str2bool PASSED [ 96%] 460s nipype/utils/onetime.py::nipype.utils.onetime.setattr_on_read PASSED [ 96%] 460s nipype/utils/tests/test_cmd.py::TestNipypeCMD::test_main_returns_2_on_empty PASSED [ 96%] 460s nipype/utils/tests/test_cmd.py::TestNipypeCMD::test_main_returns_0_on_help PASSED [ 96%] 460s nipype/utils/tests/test_cmd.py::TestNipypeCMD::test_list_nipy_interfacesp PASSED [ 96%] 460s nipype/utils/tests/test_config.py::test_display_parse[:12] PASSED [ 96%] 460s nipype/utils/tests/test_config.py::test_display_parse[localhost:12] PASSED [ 96%] 460s nipype/utils/tests/test_config.py::test_display_parse[localhost:12.1] PASSED [ 96%] 460s nipype/utils/tests/test_config.py::test_display_config[0] PASSED [ 96%] 460s nipype/utils/tests/test_config.py::test_display_config[1] PASSED [ 96%] 460s nipype/utils/tests/test_config.py::test_display_config[2] PASSED [ 96%] 460s nipype/utils/tests/test_config.py::test_display_config[3] PASSED [ 96%] 460s nipype/utils/tests/test_config.py::test_display_config[4] PASSED [ 96%] 460s nipype/utils/tests/test_config.py::test_display_system[0] PASSED [ 96%] 460s nipype/utils/tests/test_config.py::test_display_system[1] PASSED [ 96%] 460s nipype/utils/tests/test_config.py::test_display_system[2] PASSED [ 96%] 460s nipype/utils/tests/test_config.py::test_display_system[3] PASSED [ 96%] 460s nipype/utils/tests/test_config.py::test_display_system[4] PASSED [ 96%] 460s nipype/utils/tests/test_config.py::test_display_config_and_system PASSED [ 97%] 460s nipype/utils/tests/test_config.py::test_display_noconfig_nosystem_patched PASSED [ 97%] 460s nipype/utils/tests/test_config.py::test_display_empty_patched PASSED [ 97%] 460s nipype/utils/tests/test_config.py::test_display_noconfig_nosystem_patched_oldxvfbwrapper PASSED [ 97%] 460s nipype/utils/tests/test_config.py::test_display_empty_patched_oldxvfbwrapper PASSED [ 97%] 460s nipype/utils/tests/test_config.py::test_display_noconfig_nosystem_notinstalled PASSED [ 97%] 460s nipype/utils/tests/test_config.py::test_display_empty_notinstalled PASSED [ 97%] 460s nipype/utils/tests/test_config.py::test_display_noconfig_nosystem_installed SKIPPED [ 97%] 460s nipype/utils/tests/test_config.py::test_display_empty_installed SKIPPED [ 97%] 460s nipype/utils/tests/test_config.py::test_display_empty_macosx PASSED [ 97%] 460s nipype/utils/tests/test_config.py::test_cwd_cached PASSED [ 97%] 460s nipype/utils/tests/test_config.py::test_debug_mode PASSED [ 97%] 460s nipype/utils/tests/test_docparse.py::test_rev_opt_map PASSED [ 97%] 460s nipype/utils/tests/test_docparse.py::test_build_doc PASSED [ 97%] 460s nipype/utils/tests/test_docparse.py::test_insert_doc PASSED [ 97%] 460s nipype/utils/tests/test_filemanip.py::test_split_filename[foo.nii-split0] PASSED [ 97%] 460s nipype/utils/tests/test_filemanip.py::test_split_filename[foo.nii.gz-split1] PASSED [ 97%] 460s nipype/utils/tests/test_filemanip.py::test_split_filename[foo.niml.dset-split2] PASSED [ 97%] 460s nipype/utils/tests/test_filemanip.py::test_split_filename[/usr/local/foo.nii.gz-split3] PASSED [ 97%] 460s nipype/utils/tests/test_filemanip.py::test_split_filename[../usr/local/foo.nii-split4] PASSED [ 97%] 460s nipype/utils/tests/test_filemanip.py::test_split_filename[/usr/local/foo.a.b.c.d-split5] PASSED [ 97%] 460s nipype/utils/tests/test_filemanip.py::test_split_filename[/usr/local/-split6] PASSED [ 97%] 460s nipype/utils/tests/test_filemanip.py::test_fname_presuffix PASSED [ 97%] 460s nipype/utils/tests/test_filemanip.py::test_fnames_presuffix PASSED [ 97%] 460s nipype/utils/tests/test_filemanip.py::test_hash_rename[foobar.nii-foobar_0xabc123.nii] PASSED [ 97%] 460s nipype/utils/tests/test_filemanip.py::test_hash_rename[foobar.nii.gz-foobar_0xabc123.nii.gz] PASSED [ 97%] 460s nipype/utils/tests/test_filemanip.py::test_check_forhash PASSED [ 97%] 460s nipype/utils/tests/test_filemanip.py::test_copyfile PASSED [ 97%] 460s nipype/utils/tests/test_filemanip.py::test_copyfile_true PASSED [ 97%] 460s nipype/utils/tests/test_filemanip.py::test_copyfiles PASSED [ 97%] 460s nipype/utils/tests/test_filemanip.py::test_linkchain PASSED [ 98%] 460s nipype/utils/tests/test_filemanip.py::test_recopy PASSED [ 98%] 460s nipype/utils/tests/test_filemanip.py::test_copyfallback SKIPPED (Fus...) [ 98%] 460s nipype/utils/tests/test_filemanip.py::test_get_related_files PASSED [ 98%] 460s nipype/utils/tests/test_filemanip.py::test_get_related_files_noninclusive PASSED [ 98%] 460s nipype/utils/tests/test_filemanip.py::test_ensure_list[foo.nii-expected0] PASSED [ 98%] 460s nipype/utils/tests/test_filemanip.py::test_ensure_list[filename1-expected1] PASSED [ 98%] 460s nipype/utils/tests/test_filemanip.py::test_ensure_list[filename2-expected2] PASSED [ 98%] 460s nipype/utils/tests/test_filemanip.py::test_ensure_list[12.34-None] PASSED [ 98%] 460s nipype/utils/tests/test_filemanip.py::test_simplify_list[list0-foo.nii] PASSED [ 98%] 460s nipype/utils/tests/test_filemanip.py::test_simplify_list[list1-expected1] PASSED [ 98%] 462s nipype/utils/tests/test_filemanip.py::test_check_depends PASSED [ 98%] 462s nipype/utils/tests/test_filemanip.py::test_json PASSED [ 98%] 462s nipype/utils/tests/test_filemanip.py::test_related_files[/path/test.img-3-expected_files0] PASSED [ 98%] 462s nipype/utils/tests/test_filemanip.py::test_related_files[/path/test.hdr-3-expected_files1] PASSED [ 98%] 462s nipype/utils/tests/test_filemanip.py::test_related_files[/path/test.BRIK-2-expected_files2] PASSED [ 98%] 462s nipype/utils/tests/test_filemanip.py::test_related_files[/path/test.HEAD-2-expected_files3] PASSED [ 98%] 462s nipype/utils/tests/test_filemanip.py::test_related_files[/path/foo.nii-2-expected_files4] PASSED [ 98%] 462s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[sysfs on /sys type sysfs (rw,nosuid,nodev,noexec,relatime)\nproc on /proc type proc (rw,nosuid,nodev,noexec,relatime)\nudev on /dev type devtmpfs (rw,nosuid,relatime,size=8121732k,nr_inodes=2030433,mode=755)\ndevpts on /dev/pts type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=000)\ntmpfs on /run type tmpfs (rw,nosuid,noexec,relatime,size=1628440k,mode=755)\n/dev/nvme0n1p2 on / type ext4 (rw,relatime,errors=remount-ro,data=ordered)\nsecurityfs on /sys/kernel/security type securityfs (rw,nosuid,nodev,noexec,relatime)\ntmpfs on /dev/shm type tmpfs (rw,nosuid,nodev)\ntmpfs on /sys/fs/cgroup type tmpfs (ro,nosuid,nodev,noexec,mode=755)\ncgroup on /sys/fs/cgroup/systemd type cgroup (rw,nosuid,nodev,noexec,relatime,xattr,release_agent=/lib/systemd/systemd-cgroups-agent,name=systemd)\npstore on /sys/fs/pstore type pstore (rw,nosuid,nodev,noexec,relatime)\nefivarfs on /sys/firmware/efi/efivars type efivarfs (rw,nosuid,nodev,noexec,relatime)\ncgroup on /sys/fs/cgroup/cpu,cpuacct type cgroup (rw,nosuid,nodev,noexec,relatime,cpu,cpuacct)\ncgroup on /sys/fs/cgroup/freezer type cgroup (rw,nosuid,nodev,noexec,relatime,freezer)\ncgroup on /sys/fs/cgroup/pids type cgroup (rw,nosuid,nodev,noexec,relatime,pids)\ncgroup on /sys/fs/cgroup/cpuset type cgroup (rw,nosuid,nodev,noexec,relatime,cpuset)\nsystemd-1 on /proc/sys/fs/binfmt_misc type autofs (rw,relatime,fd=26,pgrp=1,timeout=0,minproto=5,maxproto=5,direct)\nhugetlbfs on /dev/hugepages type hugetlbfs (rw,relatime)\ndebugfs on /sys/kernel/debug type debugfs (rw,relatime)\nmqueue on /dev/mqueue type mqueue (rw,relatime)\nfusectl on /sys/fs/fuse/connections type fusectl (rw,relatime)\n/dev/nvme0n1p1 on /boot/efi type vfat (rw,relatime,fmask=0077,dmask=0077,codepage=437,iocharset=iso8859-1,shortname=mixed,errors=remount-ro)\n/dev/nvme0n1p2 on /var/lib/docker/aufs type ext4 (rw,relatime,errors=remount-ro,data=ordered)\ngvfsd-fuse on /run/user/1002/gvfs type fuse.gvfsd-fuse (rw,nosuid,nodev,relatime,user_id=1002,group_id=1002)\n-0-expected0] PASSED [ 98%] 462s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[/dev/disk2 on / (hfs, local, journaled)\ndevfs on /dev (devfs, local, nobrowse)\nmap -hosts on /net (autofs, nosuid, automounted, nobrowse)\nmap auto_home on /home (autofs, automounted, nobrowse)\nmap -fstab on /Network/Servers (autofs, automounted, nobrowse)\n/dev/disk3s2 on /Volumes/MyBookData (hfs, local, nodev, nosuid, journaled)\nafni:/elrond0 on /Volumes/afni (nfs)\nafni:/var/www/INCOMING on /Volumes/INCOMING (nfs)\nafni:/fraid on /Volumes/afni (nfs, asynchronous)\nboromir:/raid.bot on /Volumes/raid.bot (nfs)\nelros:/volume2/AFNI_SHARE on /Volumes/AFNI_SHARE (nfs)\nmap -static on /Volumes/safni (autofs, automounted, nobrowse)\nmap -static on /Volumes/raid.top (autofs, automounted, nobrowse)\n/dev/disk1s3 on /Volumes/Boot OS X (hfs, local, journaled, nobrowse)\n-0-expected1] PASSED [ 98%] 462s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[-1-expected2] PASSED [ 98%] 462s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[sysfs on /sys type sysfs (rw,nosuid,nodev,noexec,relatime)\nproc on /proc type proc (rw,nosuid,nodev,noexec,relatime)\nudev on /dev type devtmpfs (rw,nosuid,relatime,size=8121732k,nr_inodes=2030433,mode=755)\ndevpts on /dev/pts type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=000)\ntmpfs on /run type tmpfs (rw,nosuid,noexec,relatime,size=1628440k,mode=755)\n/dev/nvme0n1p2 on / type ext4 (rw,relatime,errors=remount-ro,data=ordered)\nsecurityfs on /sys/kernel/security type securityfs (rw,nosuid,nodev,noexec,relatime)\ntmpfs on /dev/shm type tmpfs (rw,nosuid,nodev)\ntmpfs on /sys/fs/cgroup type tmpfs (ro,nosuid,nodev,noexec,mode=755)\ncgroup on /sys/fs/cgroup/systemd type cgroup (rw,nosuid,nodev,noexec,relatime,xattr,release_agent=/lib/systemd/systemd-cgroups-agent,name=systemd)\npstore on /sys/fs/pstore type pstore (rw,nosuid,nodev,noexec,relatime)\nefivarfs on /sys/firmware/efi/efivars type efivarfs (rw,nosuid,nodev,noexec,relatime)\ncgroup on /sys/fs/cgroup/cpu,cpuacct type cgroup (rw,nosuid,nodev,noexec,relatime,cpu,cpuacct)\ncgroup on /sys/fs/cgroup/freezer type cgroup (rw,nosuid,nodev,noexec,relatime,freezer)\ncgroup on /sys/fs/cgroup/pids type cgroup (rw,nosuid,nodev,noexec,relatime,pids)\ncgroup on /sys/fs/cgroup/cpuset type cgroup (rw,nosuid,nodev,noexec,relatime,cpuset)\nsystemd-1 on /proc/sys/fs/binfmt_misc type autofs (rw,relatime,fd=26,pgrp=1,timeout=0,minproto=5,maxproto=5,direct)\nhugetlbfs on /dev/hugepages type hugetlbfs (rw,relatime)\ndebugfs on /sys/kernel/debug type debugfs (rw,relatime)\nmqueue on /dev/mqueue type mqueue (rw,relatime)\nfusectl on /sys/fs/fuse/connections type fusectl (rw,relatime)\n/dev/nvme0n1p1 on /boot/efi type vfat (rw,relatime,fmask=0077,dmask=0077,codepage=437,iocharset=iso8859-1,shortname=mixed,errors=remount-ro)\n/dev/nvme0n1p2 on /var/lib/docker/aufs type ext4 (rw,relatime,errors=remount-ro,data=ordered)\ngvfsd-fuse on /run/user/1002/gvfs type fuse.gvfsd-fuse (rw,nosuid,nodev,relatime,user_id=1002,group_id=1002)\n-0-expected3] PASSED [ 98%] 462s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[/dev/disk2 on / (hfs, local, journaled)\ndevfs on /dev (devfs, local, nobrowse)\nafni:/elrond0 on /Volumes/afni (cifs)\nafni:/var/www/INCOMING on /Volumes/INCOMING (nfs)\nafni:/fraid on /Volumes/afni/fraid (nfs, asynchronous)\nboromir:/raid.bot on /Volumes/raid.bot (nfs)\nelros:/volume2/AFNI_SHARE on /Volumes/AFNI_SHARE (nfs)\n-0-expected4] PASSED [ 98%] 462s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[overlay on / type overlay (rw,relatime,lowerdir=/var/lib/docker/overlay2/l/26UTYITLF24YE7KEGTMHUNHPPG:/var/lib/docker/overlay2/l/SWGNP3T2EEB4CNBJFN3SDZLXHP,upperdir=/var/lib/docker/overlay2/a4c54ab1aa031bb5a14a424abd655510521e183ee4fa4158672e8376c89df394/diff,workdir=/var/lib/docker/overlay2/a4c54ab1aa031bb5a14a424abd655510521e183ee4fa4158672e8376c89df394/work)\nproc on /proc type proc (rw,nosuid,nodev,noexec,relatime)\ntmpfs on /dev type tmpfs (rw,nosuid,size=65536k,mode=755)\ndevpts on /dev/pts type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=666)\nsysfs on /sys type sysfs (ro,nosuid,nodev,noexec,relatime)\ntmpfs on /sys/fs/cgroup type tmpfs (ro,nosuid,nodev,noexec,relatime,mode=755)\ncpuset on /sys/fs/cgroup/cpuset type cgroup (ro,nosuid,nodev,noexec,relatime,cpuset)\ncpu on /sys/fs/cgroup/cpu type cgroup (ro,nosuid,nodev,noexec,relatime,cpu)\ncpuacct on /sys/fs/cgroup/cpuacct type cgroup (ro,nosuid,nodev,noexec,relatime,cpuacct)\nblkio on /sys/fs/cgroup/blkio type cgroup (ro,nosuid,nodev,noexec,relatime,blkio)\nmemory on /sys/fs/cgroup/memory type cgroup (ro,nosuid,nodev,noexec,relatime,memory)\ndevices on /sys/fs/cgroup/devices type cgroup (ro,nosuid,nodev,noexec,relatime,devices)\nfreezer on /sys/fs/cgroup/freezer type cgroup (ro,nosuid,nodev,noexec,relatime,freezer)\nnet_cls on /sys/fs/cgroup/net_cls type cgroup (ro,nosuid,nodev,noexec,relatime,net_cls)\nperf_event on /sys/fs/cgroup/perf_event type cgroup (ro,nosuid,nodev,noexec,relatime,perf_event)\nnet_prio on /sys/fs/cgroup/net_prio type cgroup (ro,nosuid,nodev,noexec,relatime,net_prio)\nhugetlb on /sys/fs/cgroup/hugetlb type cgroup (ro,nosuid,nodev,noexec,relatime,hugetlb)\npids on /sys/fs/cgroup/pids type cgroup (ro,nosuid,nodev,noexec,relatime,pids)\ncgroup on /sys/fs/cgroup/systemd type cgroup (ro,nosuid,nodev,noexec,relatime,name=systemd)\nmqueue on /dev/mqueue type mqueue (rw,nosuid,nodev,noexec,relatime)\n//10.0.75.1/C on /data type cifs (rw,relatime,vers=3.02,sec=ntlmsspi,cache=strict,username=filo,domain=MSI,uid=0,noforceuid,gid=0,noforcegid,addr=10.0.75.1,file_mode=0755,dir_mode=0755,iocharset=utf8,nounix,serverino,mapposix,nobrl,mfsymlinks,noperm,rsize=1048576,wsize=1048576,echo_interval=60,actimeo=1)\n/dev/sda1 on /etc/resolv.conf type ext4 (rw,relatime,data=ordered)\n/dev/sda1 on /etc/hostname type ext4 (rw,relatime,data=ordered)\n/dev/sda1 on /etc/hosts type ext4 (rw,relatime,data=ordered)\nshm on /dev/shm type tmpfs (rw,nosuid,nodev,noexec,relatime,size=65536k)\ndevpts on /dev/console type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=666)\nproc on /proc/bus type proc (ro,relatime)\nproc on /proc/fs type proc (ro,relatime)\nproc on /proc/irq type proc (ro,relatime)\nproc on /proc/sys type proc (ro,relatime)\nproc on /proc/sysrq-trigger type proc (ro,relatime)\ntmpfs on /proc/kcore type tmpfs (rw,nosuid,size=65536k,mode=755)\ntmpfs on /proc/timer_list type tmpfs (rw,nosuid,size=65536k,mode=755)\ntmpfs on /proc/sched_debug type tmpfs (rw,nosuid,size=65536k,mode=755)\ntmpfs on /proc/scsi type tmpfs (ro,relatime)\ntmpfs on /sys/firmware type tmpfs (ro,relatime)\n-0-expected5] PASSED [ 98%] 462s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[/proc on /proc type proc (rw,relatime)\nsysfs on /sys type sysfs (rw,nosuid,nodev,noexec,relatime)\ntmpfs on /dev/shm type tmpfs (rw,relatime)\ndevpts on /dev/pts type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=666)\n\ndevpts on /dev/ptmx type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=666)\n\n-0-expected6] PASSED [ 98%] 462s nipype/utils/tests/test_filemanip.py::test_cifs_check PASSED [ 98%] 462s nipype/utils/tests/test_filemanip.py::test_indirectory PASSED [ 98%] 462s nipype/utils/tests/test_filemanip.py::test_pklization PASSED [ 98%] 462s nipype/utils/tests/test_filemanip.py::test_versioned_pklization PASSED [ 98%] 462s nipype/utils/tests/test_filemanip.py::test_unversioned_pklization PASSED [ 98%] 462s nipype/utils/tests/test_filemanip.py::test_path_strict_resolve PASSED [ 99%] 462s nipype/utils/tests/test_filemanip.py::test_pickle[True] PASSED [ 99%] 462s nipype/utils/tests/test_filemanip.py::test_pickle[False] PASSED [ 99%] 462s nipype/utils/tests/test_filemanip.py::test_write_rst_list[- \n\n] PASSED [ 99%] 462s nipype/utils/tests/test_filemanip.py::test_write_rst_list[A string- A string\n\n] PASSED [ 99%] 462s nipype/utils/tests/test_filemanip.py::test_write_rst_list[items2- A list\n Of strings\n\n] PASSED [ 99%] 462s nipype/utils/tests/test_filemanip.py::test_write_rst_list[None-TypeError] PASSED [ 99%] 462s nipype/utils/tests/test_filemanip.py::test_emptydirs_dangling_nfs PASSED [ 99%] 462s nipype/utils/tests/test_functions.py::test_func_to_str PASSED [ 99%] 462s nipype/utils/tests/test_functions.py::test_func_to_str_err PASSED [ 99%] 462s nipype/utils/tests/test_functions.py::test_func_string PASSED [ 99%] 462s nipype/utils/tests/test_functions.py::test_func_print PASSED [ 99%] 462s nipype/utils/tests/test_imagemanip.py::test_copy_header[True] PASSED [ 99%] 462s nipype/utils/tests/test_imagemanip.py::test_copy_header[False] PASSED [ 99%] 462s nipype/utils/tests/test_misc.py::test_cont_to_str PASSED [ 99%] 462s nipype/utils/tests/test_misc.py::test_str2bool[yes-True] PASSED [ 99%] 462s nipype/utils/tests/test_misc.py::test_str2bool[true-True] PASSED [ 99%] 462s nipype/utils/tests/test_misc.py::test_str2bool[t-True] PASSED [ 99%] 462s nipype/utils/tests/test_misc.py::test_str2bool[1-True] PASSED [ 99%] 462s nipype/utils/tests/test_misc.py::test_str2bool[no-False] PASSED [ 99%] 462s nipype/utils/tests/test_misc.py::test_str2bool[false-False] PASSED [ 99%] 462s nipype/utils/tests/test_misc.py::test_str2bool[n-False] PASSED [ 99%] 462s nipype/utils/tests/test_misc.py::test_str2bool[f-False] PASSED [ 99%] 462s nipype/utils/tests/test_misc.py::test_str2bool[0-False] PASSED [ 99%] 462s nipype/utils/tests/test_misc.py::test_flatten PASSED [ 99%] 462s nipype/utils/tests/test_misc.py::test_rgetcwd PASSED [ 99%] 462s nipype/utils/tests/test_misc.py::test_dict_diff PASSED [ 99%] 462s nipype/utils/tests/test_nipype2boutiques.py::test_generate PASSED [ 99%] 462s nipype/utils/tests/test_provenance.py::test_provenance PASSED [ 99%] 463s nipype/utils/tests/test_provenance.py::test_provenance_exists PASSED [ 99%] 466s nipype/utils/tests/test_provenance.py::test_safe_encode PASSED [100%] 466s 466s =============================== warnings summary =============================== 466s ../../../usr/lib/python3/dist-packages/traits/observation/_generated_parser.py:258 466s /usr/lib/python3/dist-packages/traits/observation/_generated_parser.py:258: DeprecationWarning: module 'sre_parse' is deprecated 466s import sre_parse 466s 466s ../../../usr/lib/python3/dist-packages/traits/observation/_generated_parser.py:259 466s /usr/lib/python3/dist-packages/traits/observation/_generated_parser.py:259: DeprecationWarning: module 'sre_constants' is deprecated 466s import sre_constants 466s 466s ../../../usr/lib/python3/dist-packages/_pytest/config/__init__.py:1428 466s /usr/lib/python3/dist-packages/_pytest/config/__init__.py:1428: PytestConfigWarning: Unknown config option: env 466s 466s self._warn_or_fail_if_strict(f"Unknown config option: {key}\n") 466s 466s ../../../usr/lib/python3/dist-packages/dipy/align/streamwarp.py:15 466s /usr/lib/python3/dist-packages/dipy/align/streamwarp.py:15: UserWarning: You do not have FURY installed. Some visualization functions might not work for you. Please install or upgrade FURY using pip install -U fury. For detailed installation instructions visit: https://fury.gl/ 466s from dipy.viz.plotting import bundle_shape_profile 466s 466s nipype/pipeline/engine/tests/test_nodes.py:319 466s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/pipeline/engine/tests/test_nodes.py:319: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 466s @pytest.mark.timeout(30) 466s 466s nipype/pipeline/plugins/tests/test_oar.py:33 466s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/pipeline/plugins/tests/test_oar.py:33: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 466s @pytest.mark.timeout(60) 466s 466s nipype/pipeline/plugins/tests/test_pbs.py:32 466s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/pipeline/plugins/tests/test_pbs.py:32: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 466s @pytest.mark.timeout(60) 466s 466s nipype/utils/tests/test_provenance.py:16 466s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/utils/tests/test_provenance.py:16: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 466s @pytest.mark.timeout(60) 466s 466s nipype/utils/tests/test_provenance.py:29 466s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/utils/tests/test_provenance.py:29: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 466s @pytest.mark.timeout(60) 466s 466s nipype/workflows/__init__.py:27 466s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/workflows/__init__.py:27: UserWarning: Nipype 1 workflows have been moved to the niflow-nipype1-workflows package. pip install niflow-nipype1-workflows to continue using them. 466s warnings.warn(" ".join(_msg)) 466s 466s algorithms/tests/test_CompCor.py::TestCompCor::test_tcompcor_asymmetric_dim 466s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/algorithms/confounds.py:1453: RuntimeWarning: invalid value encountered in divide 466s variance_explained = (s**2) / np.sum(s**2) 466s 466s interfaces/ants/utils.py::nipype.interfaces.ants.utils.ImageMath 466s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/interfaces/ants/utils.py:216: UserWarning: copy_header cannot be updated to True with PadImage as operation. 466s warn( 466s 466s interfaces/dipy/tests/test_base.py::test_get_default_args 466s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/interfaces/dipy/tests/test_base.py:130: UserWarning: Pass ['new_name', 'since', 'until'] as keyword args. From version 2.0.0 passing these as positional arguments will result in an error. 466s @deprecated_params('x', None, '0.3', '0.5', alternative='test2.y') 466s 466s interfaces/dipy/tests/test_base.py::test_get_default_args 466s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/interfaces/dipy/tests/test_base.py:134: UserWarning: Pass ['new_name', 'since'] as keyword args. From version 2.0.0 passing these as positional arguments will result in an error. 466s @deprecated_params(['dummy', 'x'], None, '0.3', alternative='test2.y') 466s 466s interfaces/dipy/tests/test_base.py::test_get_default_args 466s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/interfaces/dipy/tests/test_base.py:138: UserWarning: Pass ['new_name', 'since', 'until'] as keyword args. From version 2.0.0 passing these as positional arguments will result in an error. 466s @deprecated_params(['dummy', 'x'], None, '0.3', '0.5', alternative='test2.y') 466s 466s interfaces/fsl/dti.py::nipype.interfaces.fsl.dti.ProbTrackX 466s interfaces/fsl/dti.py::nipype.interfaces.fsl.dti.ProbTrackX2 466s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/interfaces/fsl/dti.py:812: DeprecationWarning: Deprecated: Please use create_bedpostx_pipeline instead 466s warnings.warn( 466s 466s interfaces/fsl/epi.py::nipype.interfaces.fsl.epi.EPIDeWarp 466s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/interfaces/fsl/epi.py:1400: DeprecationWarning: Deprecated: Please use niflow.nipype1.workflows.dmri.preprocess.epi.sdc_fmb instead 466s warnings.warn( 466s 466s interfaces/fsl/epi.py::nipype.interfaces.fsl.epi.EddyCorrect 466s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/interfaces/fsl/epi.py:1506: DeprecationWarning: Deprecated: Please use nipype.interfaces.fsl.epi.Eddy instead 466s warnings.warn( 466s 466s interfaces/nipy/utils.py::nipype.interfaces.nipy.utils.Similarity 466s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/interfaces/nipy/utils.py:57: DeprecationWarning: This interface is deprecated since 0.10.0. Please use nipype.algorithms.metrics.Similarity 466s warnings.warn( 466s 466s pipeline/engine/tests/test_engine.py: 24 warnings 466s compilation 13:5: DeprecationWarning: nx.nx_pydot.write_dot depends on the pydot package, which has known issues and is not actively maintained. Consider using nx.nx_agraph.write_dot instead. 466s 466s See https://github.com/networkx/networkx/issues/5723 466s 466s pipeline/engine/tests/test_engine.py: 24 warnings 466s /usr/lib/python3/dist-packages/networkx/drawing/nx_pydot.py:51: DeprecationWarning: nx.nx_pydot.to_pydot depends on the pydot package, which has known issues and is not actively maintained. 466s 466s See https://github.com/networkx/networkx/issues/5723 466s P = to_pydot(G) 466s 466s pipeline/engine/tests/test_utils.py::test_provenance 466s pipeline/engine/tests/test_utils.py::test_provenance 466s pipeline/engine/tests/test_utils.py::test_provenance 466s utils/tests/test_provenance.py::test_provenance_exists 466s /usr/lib/python3/dist-packages/prov/serializers/provrdf.py:269: DeprecationWarning: ConjunctiveGraph is deprecated, use Dataset instead. 466s container = ConjunctiveGraph(identifier=identifier) 466s 466s pipeline/plugins/tests/test_callback.py::test_callback_exception[True-LegacyMultiProc] 466s pipeline/plugins/tests/test_callback.py::test_callback_exception[True-LegacyMultiProc] 466s /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: This process (pid=4046) is multi-threaded, use of fork() may lead to deadlocks in the child. 466s self.pid = os.fork() 466s 466s utils/tests/test_misc.py::test_rgetcwd 466s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/utils/misc.py:363: UserWarning: Current folder does not exist, replacing with "/tmp/pytest-of-ubuntu/pytest-0/test_rgetcwd0" instead. 466s warn('Current folder does not exist, replacing with "%s" instead.' % cwd) 466s 466s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 466s = 2740 passed, 267 skipped, 2 deselected, 5 xfailed, 75 warnings in 190.55s (0:03:10) = 469s Testing with python3.14 in /tmp/autopkgtest.ALkHf7/autopkgtest_tmp: 471s ============================= test session starts ============================== 471s platform linux -- Python 3.14.2, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3.14 471s cachedir: .pytest_cache 471s rootdir: /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype 471s configfile: pytest.ini 471s plugins: typeguard-4.4.4, xdist-3.8.0 507s collecting ... collected 3014 items / 2 deselected / 3012 selected 507s 507s nipype/algorithms/confounds.py::nipype.algorithms.confounds.CompCor PASSED [ 0%] 507s nipype/algorithms/confounds.py::nipype.algorithms.confounds.TCompCor PASSED [ 0%] 507s nipype/algorithms/confounds.py::nipype.algorithms.confounds.TSNR PASSED [ 0%] 507s nipype/algorithms/metrics.py::nipype.algorithms.metrics.ErrorMap PASSED [ 0%] 507s nipype/algorithms/metrics.py::nipype.algorithms.metrics.FuzzyOverlap PASSED [ 0%] 507s nipype/algorithms/metrics.py::nipype.algorithms.metrics.Overlap PASSED [ 0%] 507s nipype/algorithms/metrics.py::nipype.algorithms.metrics.Similarity PASSED [ 0%] 507s nipype/algorithms/misc.py::nipype.algorithms.misc.AddCSVColumn PASSED [ 0%] 507s nipype/algorithms/misc.py::nipype.algorithms.misc.AddCSVRow 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nipype/interfaces/fsl/tests/test_auto_Split.py::test_Split_outputs PASSED [ 47%] 543s nipype/interfaces/fsl/tests/test_auto_StdImage.py::test_StdImage_inputs PASSED [ 47%] 543s nipype/interfaces/fsl/tests/test_auto_StdImage.py::test_StdImage_outputs PASSED [ 47%] 543s nipype/interfaces/fsl/tests/test_auto_SwapDimensions.py::test_SwapDimensions_inputs PASSED [ 47%] 543s nipype/interfaces/fsl/tests/test_auto_SwapDimensions.py::test_SwapDimensions_outputs PASSED [ 47%] 543s nipype/interfaces/fsl/tests/test_auto_TOPUP.py::test_TOPUP_inputs PASSED [ 47%] 543s nipype/interfaces/fsl/tests/test_auto_TOPUP.py::test_TOPUP_outputs PASSED [ 47%] 543s nipype/interfaces/fsl/tests/test_auto_TemporalFilter.py::test_TemporalFilter_inputs PASSED [ 47%] 543s nipype/interfaces/fsl/tests/test_auto_TemporalFilter.py::test_TemporalFilter_outputs PASSED [ 47%] 543s nipype/interfaces/fsl/tests/test_auto_Text2Vest.py::test_Text2Vest_inputs PASSED [ 47%] 543s nipype/interfaces/fsl/tests/test_auto_Text2Vest.py::test_Text2Vest_outputs PASSED [ 47%] 543s nipype/interfaces/fsl/tests/test_auto_Threshold.py::test_Threshold_inputs PASSED [ 47%] 543s nipype/interfaces/fsl/tests/test_auto_Threshold.py::test_Threshold_outputs PASSED [ 47%] 543s nipype/interfaces/fsl/tests/test_auto_TractSkeleton.py::test_TractSkeleton_inputs PASSED [ 47%] 543s nipype/interfaces/fsl/tests/test_auto_TractSkeleton.py::test_TractSkeleton_outputs PASSED [ 47%] 543s nipype/interfaces/fsl/tests/test_auto_Training.py::test_Training_inputs PASSED [ 47%] 543s nipype/interfaces/fsl/tests/test_auto_Training.py::test_Training_outputs PASSED [ 47%] 543s nipype/interfaces/fsl/tests/test_auto_TrainingSetCreator.py::test_TrainingSetCreator_inputs PASSED [ 47%] 543s nipype/interfaces/fsl/tests/test_auto_TrainingSetCreator.py::test_TrainingSetCreator_outputs PASSED [ 47%] 543s nipype/interfaces/fsl/tests/test_auto_UnaryMaths.py::test_UnaryMaths_inputs PASSED [ 47%] 543s nipype/interfaces/fsl/tests/test_auto_UnaryMaths.py::test_UnaryMaths_outputs PASSED [ 47%] 543s nipype/interfaces/fsl/tests/test_auto_VecReg.py::test_VecReg_inputs PASSED [ 47%] 543s nipype/interfaces/fsl/tests/test_auto_VecReg.py::test_VecReg_outputs PASSED [ 48%] 543s nipype/interfaces/fsl/tests/test_auto_Vest2Text.py::test_Vest2Text_inputs PASSED [ 48%] 543s nipype/interfaces/fsl/tests/test_auto_Vest2Text.py::test_Vest2Text_outputs PASSED [ 48%] 543s nipype/interfaces/fsl/tests/test_auto_WarpPoints.py::test_WarpPoints_inputs PASSED [ 48%] 543s nipype/interfaces/fsl/tests/test_auto_WarpPoints.py::test_WarpPoints_outputs PASSED [ 48%] 543s nipype/interfaces/fsl/tests/test_auto_WarpPointsFromStd.py::test_WarpPointsFromStd_inputs PASSED [ 48%] 543s nipype/interfaces/fsl/tests/test_auto_WarpPointsFromStd.py::test_WarpPointsFromStd_outputs PASSED [ 48%] 543s nipype/interfaces/fsl/tests/test_auto_WarpPointsToStd.py::test_WarpPointsToStd_inputs PASSED [ 48%] 543s nipype/interfaces/fsl/tests/test_auto_WarpPointsToStd.py::test_WarpPointsToStd_outputs PASSED [ 48%] 543s nipype/interfaces/fsl/tests/test_auto_WarpUtils.py::test_WarpUtils_inputs PASSED [ 48%] 543s nipype/interfaces/fsl/tests/test_auto_WarpUtils.py::test_WarpUtils_outputs PASSED [ 48%] 543s nipype/interfaces/fsl/tests/test_auto_XFibres5.py::test_XFibres5_inputs PASSED [ 48%] 543s nipype/interfaces/fsl/tests/test_auto_XFibres5.py::test_XFibres5_outputs PASSED [ 48%] 543s nipype/interfaces/fsl/tests/test_base.py::test_fslversion SKIPPED (f...) [ 48%] 543s nipype/interfaces/fsl/tests/test_base.py::test_fsloutputtype SKIPPED [ 48%] 543s nipype/interfaces/fsl/tests/test_base.py::test_outputtype_to_ext PASSED [ 48%] 543s nipype/interfaces/fsl/tests/test_base.py::test_FSLCommand SKIPPED (f...) [ 48%] 543s nipype/interfaces/fsl/tests/test_base.py::test_FSLCommand2 SKIPPED (...) [ 48%] 543s nipype/interfaces/fsl/tests/test_base.py::test_gen_fname[args0-desired_name0] SKIPPED [ 48%] 543s nipype/interfaces/fsl/tests/test_base.py::test_gen_fname[args1-desired_name1] SKIPPED [ 48%] 543s nipype/interfaces/fsl/tests/test_base.py::test_gen_fname[args2-desired_name2] SKIPPED [ 48%] 543s nipype/interfaces/fsl/tests/test_base.py::test_gen_fname[args3-desired_name3] SKIPPED [ 48%] 543s nipype/interfaces/fsl/tests/test_dti.py::test_dtifit2 SKIPPED (fsl i...) [ 48%] 543s nipype/interfaces/fsl/tests/test_dti.py::test_randomise2 XFAIL (Thes...) [ 48%] 543s nipype/interfaces/fsl/tests/test_dti.py::test_Randomise_parallel XFAIL [ 48%] 543s nipype/interfaces/fsl/tests/test_dti.py::test_Proj_thresh XFAIL (The...) [ 48%] 544s nipype/interfaces/fsl/tests/test_dti.py::test_Vec_reg XFAIL (These t...) [ 48%] 544s nipype/interfaces/fsl/tests/test_dti.py::test_Find_the_biggest XFAIL [ 48%] 544s nipype/interfaces/fsl/tests/test_dti.py::test_tbss_skeleton SKIPPED [ 48%] 544s nipype/interfaces/fsl/tests/test_dti.py::test_distancemap SKIPPED (f...) [ 48%] 544s nipype/interfaces/fsl/tests/test_epi.py::test_eddy_correct2 SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[None] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[GIFTI] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[NIFTI] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[NIFTI_GZ] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[NIFTI_PAIR] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_maths_base[NIFTI_PAIR_GZ] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[None] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[GIFTI] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[NIFTI] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[NIFTI_GZ] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[NIFTI_PAIR] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_changedt[NIFTI_PAIR_GZ] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[None] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[GIFTI] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[NIFTI] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[NIFTI_GZ] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[NIFTI_PAIR] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_threshold[NIFTI_PAIR_GZ] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[None] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[GIFTI] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[NIFTI] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[NIFTI_GZ] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[NIFTI_PAIR] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_meanimage[NIFTI_PAIR_GZ] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[None] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[GIFTI] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[NIFTI] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[NIFTI_GZ] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[NIFTI_PAIR] SKIPPED [ 49%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_stdimage[NIFTI_PAIR_GZ] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[None] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[GIFTI] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[NIFTI] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[NIFTI_GZ] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[NIFTI_PAIR] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_maximage[NIFTI_PAIR_GZ] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[None] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[GIFTI] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[NIFTI] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[NIFTI_GZ] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[NIFTI_PAIR] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_smooth[NIFTI_PAIR_GZ] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_mask[None] SKIPPED (...) [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_mask[GIFTI] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_mask[NIFTI] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_mask[NIFTI_GZ] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_mask[NIFTI_PAIR] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_mask[NIFTI_PAIR_GZ] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[None] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[GIFTI] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[NIFTI] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[NIFTI_GZ] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[NIFTI_PAIR] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_dilation[NIFTI_PAIR_GZ] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[None] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[GIFTI] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[NIFTI] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[NIFTI_GZ] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[NIFTI_PAIR] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_erosion[NIFTI_PAIR_GZ] SKIPPED [ 50%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[None] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[GIFTI] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[NIFTI] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[NIFTI_GZ] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[NIFTI_PAIR] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_spatial_filter[NIFTI_PAIR_GZ] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[None] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[GIFTI] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[NIFTI] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[NIFTI_GZ] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[NIFTI_PAIR] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_unarymaths[NIFTI_PAIR_GZ] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[None] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[GIFTI] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[NIFTI] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[NIFTI_GZ] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[NIFTI_PAIR] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_binarymaths[NIFTI_PAIR_GZ] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[None] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[GIFTI] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[NIFTI] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[NIFTI_GZ] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[NIFTI_PAIR] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_multimaths[NIFTI_PAIR_GZ] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[None] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[GIFTI] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[NIFTI] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[NIFTI_GZ] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[NIFTI_PAIR] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_maths.py::test_tempfilt[NIFTI_PAIR_GZ] SKIPPED [ 51%] 544s nipype/interfaces/fsl/tests/test_model.py::test_MultipleRegressDesign SKIPPED [ 52%] 544s nipype/interfaces/fsl/tests/test_preprocess.py::test_bet SKIPPED (fs...) [ 52%] 544s nipype/interfaces/fsl/tests/test_preprocess.py::test_fast SKIPPED (f...) [ 52%] 544s nipype/interfaces/fsl/tests/test_preprocess.py::test_fast_list_outputs SKIPPED [ 52%] 544s nipype/interfaces/fsl/tests/test_preprocess.py::test_flirt SKIPPED (...) [ 52%] 544s nipype/interfaces/fsl/tests/test_preprocess.py::test_mcflirt SKIPPED [ 52%] 544s nipype/interfaces/fsl/tests/test_preprocess.py::test_mcflirt_opt SKIPPED [ 52%] 544s nipype/interfaces/fsl/tests/test_preprocess.py::test_mcflirt_noinput SKIPPED [ 52%] 544s nipype/interfaces/fsl/tests/test_preprocess.py::test_fnirt SKIPPED (...) [ 52%] 544s nipype/interfaces/fsl/tests/test_preprocess.py::test_applywarp SKIPPED [ 52%] 544s nipype/interfaces/fsl/tests/test_preprocess.py::test_fugue[attr0-fmap_out_file] SKIPPED [ 52%] 544s nipype/interfaces/fsl/tests/test_preprocess.py::test_fugue[attr1-shift_out_file] SKIPPED [ 52%] 544s nipype/interfaces/fsl/tests/test_preprocess.py::test_fugue[attr2-unwarped_file] SKIPPED [ 52%] 544s nipype/interfaces/fsl/tests/test_preprocess.py::test_first_genfname SKIPPED [ 52%] 544s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[None] SKIPPED [ 52%] 544s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[GIFTI] SKIPPED [ 52%] 544s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[NIFTI] SKIPPED [ 52%] 544s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[NIFTI_GZ] SKIPPED [ 52%] 544s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[NIFTI_PAIR] SKIPPED [ 52%] 544s nipype/interfaces/fsl/tests/test_utils.py::test_fslroi[NIFTI_PAIR_GZ] SKIPPED [ 52%] 544s 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nipype/pipeline/engine/tests/test_utils.py::test_format_node PASSED [ 94%] 580s nipype/pipeline/engine/tests/test_workflows.py::test_init PASSED [ 94%] 580s nipype/pipeline/engine/tests/test_workflows.py::test_connect PASSED [ 94%] 580s nipype/pipeline/engine/tests/test_workflows.py::test_add_nodes PASSED [ 94%] 580s nipype/pipeline/engine/tests/test_workflows.py::test_disconnect PASSED [ 94%] 580s nipype/pipeline/engine/tests/test_workflows.py::test_workflow_add PASSED [ 94%] 580s nipype/pipeline/engine/tests/test_workflows.py::test_doubleconnect PASSED [ 94%] 580s nipype/pipeline/engine/tests/test_workflows.py::test_nested_workflow_doubleconnect PASSED [ 94%] 580s nipype/pipeline/engine/tests/test_workflows.py::test_duplicate_node_check PASSED [ 94%] 581s nipype/pipeline/engine/tests/test_workflows.py::test_outputs_removal_wf[Linear-False-True] PASSED [ 94%] 581s nipype/pipeline/engine/tests/test_workflows.py::test_outputs_removal_wf[Linear-False-False] PASSED [ 94%] 581s nipype/pipeline/engine/tests/test_workflows.py::test_outputs_removal_wf[Linear-True-True] PASSED [ 94%] 581s nipype/pipeline/engine/tests/test_workflows.py::test_outputs_removal_wf[Linear-True-False] PASSED [ 94%] 602s nipype/pipeline/engine/tests/test_workflows.py::test_outputs_removal_wf[MultiProc-False-True] PASSED [ 94%] 623s nipype/pipeline/engine/tests/test_workflows.py::test_outputs_removal_wf[MultiProc-False-False] PASSED [ 94%] 643s nipype/pipeline/engine/tests/test_workflows.py::test_outputs_removal_wf[MultiProc-True-True] PASSED [ 94%] 667s nipype/pipeline/engine/tests/test_workflows.py::test_outputs_removal_wf[MultiProc-True-False] PASSED [ 94%] 667s nipype/pipeline/engine/tests/test_workflows.py::test_config_setting PASSED [ 94%] 667s nipype/pipeline/engine/utils.py::nipype.pipeline.engine.utils.merge_dict PASSED [ 94%] 667s nipype/pipeline/engine/utils.py::nipype.pipeline.engine.utils.synchronize_iterables PASSED [ 94%] 667s nipype/pipeline/engine/utils.py::nipype.pipeline.engine.utils.walk PASSED [ 94%] 667s nipype/pipeline/plugins/sge.py::nipype.pipeline.plugins.sge.qsub_sanitize_job_name PASSED [ 94%] 667s nipype/pipeline/plugins/tests/test_base.py::test_scipy_sparse PASSED [ 94%] 667s nipype/pipeline/plugins/tests/test_callback.py::test_callback_normal[Linear] PASSED [ 94%] 675s nipype/pipeline/plugins/tests/test_callback.py::test_callback_normal[MultiProc] PASSED [ 95%] 683s nipype/pipeline/plugins/tests/test_callback.py::test_callback_normal[LegacyMultiProc] PASSED [ 95%] 684s nipype/pipeline/plugins/tests/test_callback.py::test_callback_exception[False-Linear] PASSED [ 95%] 690s nipype/pipeline/plugins/tests/test_callback.py::test_callback_exception[False-MultiProc] PASSED [ 95%] 699s nipype/pipeline/plugins/tests/test_callback.py::test_callback_exception[False-LegacyMultiProc] PASSED [ 95%] 699s nipype/pipeline/plugins/tests/test_callback.py::test_callback_exception[True-Linear] PASSED [ 95%] 704s nipype/pipeline/plugins/tests/test_callback.py::test_callback_exception[True-MultiProc] PASSED [ 95%] 711s nipype/pipeline/plugins/tests/test_callback.py::test_callback_exception[True-LegacyMultiProc] PASSED [ 95%] 711s nipype/pipeline/plugins/tests/test_callback.py::test_callback_gantt[Linear] PASSED [ 95%] 719s nipype/pipeline/plugins/tests/test_callback.py::test_callback_gantt[MultiProc] PASSED [ 95%] 737s nipype/pipeline/plugins/tests/test_callback.py::test_callback_gantt[LegacyMultiProc] PASSED [ 95%] 737s nipype/pipeline/plugins/tests/test_debug.py::test_debug PASSED [ 95%] 737s nipype/pipeline/plugins/tests/test_legacymultiproc_nondaemon.py::test_run_multiproc_nondaemon_false SKIPPED [ 95%] 737s nipype/pipeline/plugins/tests/test_legacymultiproc_nondaemon.py::test_run_multiproc_nondaemon_true SKIPPED [ 95%] 737s nipype/pipeline/plugins/tests/test_linear.py::test_run_in_series PASSED [ 95%] 737s nipype/pipeline/plugins/tests/test_multiproc.py::test_run_multiproc SKIPPED [ 95%] 737s nipype/pipeline/plugins/tests/test_multiproc.py::test_no_more_memory_than_specified PASSED [ 95%] 737s nipype/pipeline/plugins/tests/test_multiproc.py::test_no_more_threads_than_specified PASSED [ 95%] 737s nipype/pipeline/plugins/tests/test_multiproc.py::test_no_more_gpu_threads_than_specified PASSED [ 95%] 737s nipype/pipeline/plugins/tests/test_multiproc.py::test_hold_job_until_procs_available SKIPPED [ 95%] 737s nipype/pipeline/plugins/tests/test_oar.py::test_run_oargraph SKIPPED [ 95%] 737s nipype/pipeline/plugins/tests/test_pbs.py::test_run_pbsgraph SKIPPED [ 95%] 742s nipype/pipeline/plugins/tests/test_sgelike.py::test_crashfile_creation PASSED [ 95%] 742s nipype/pipeline/plugins/tests/test_somaflow.py::test_run_somaflow SKIPPED [ 95%] 742s nipype/pipeline/plugins/tests/test_tools.py::test_report_crash PASSED [ 95%] 742s nipype/testing/tests/test_utils.py::test_tempfatfs SKIPPED (Cannot m...) [ 95%] 742s nipype/testing/tests/test_utils.py::test_tempfatfs_calledprocesserror PASSED [ 95%] 742s nipype/testing/tests/test_utils.py::test_tempfatfs_oserror PASSED [ 95%] 742s nipype/tests/test_nipype.py::test_nipype_info PASSED [ 95%] 742s nipype/tests/test_nipype.py::test_git_hash SKIPPED (not able to get ...) [ 95%] 742s nipype/tests/test_nipype.py::test_no_et_bare PASSED [ 96%] 744s nipype/tests/test_nipype.py::test_no_et_multiproc[True-MultiProc] PASSED [ 96%] 746s nipype/tests/test_nipype.py::test_no_et_multiproc[True-LegacyMultiProc] PASSED [ 96%] 752s nipype/tests/test_nipype.py::test_no_et_multiproc[False-MultiProc] PASSED [ 96%] 758s nipype/tests/test_nipype.py::test_no_et_multiproc[False-LegacyMultiProc] PASSED [ 96%] 758s nipype/tests/test_sample.py::test_basic PASSED [ 96%] 758s nipype/utils/docparse.py::nipype.utils.docparse.insert_doc PASSED [ 96%] 758s nipype/utils/filemanip.py::nipype.utils.filemanip.fname_presuffix PASSED [ 96%] 758s nipype/utils/filemanip.py::nipype.utils.filemanip.hash_infile PASSED [ 96%] 758s nipype/utils/filemanip.py::nipype.utils.filemanip.read_stream PASSED [ 96%] 758s nipype/utils/filemanip.py::nipype.utils.filemanip.split_filename PASSED [ 96%] 758s nipype/utils/matlabtools.py::nipype.utils.matlabtools.mlab_tempfile PASSED [ 96%] 758s nipype/utils/misc.py::nipype.utils.misc.str2bool PASSED [ 96%] 758s nipype/utils/onetime.py::nipype.utils.onetime.setattr_on_read PASSED [ 96%] 758s nipype/utils/tests/test_cmd.py::TestNipypeCMD::test_main_returns_2_on_empty PASSED [ 96%] 758s nipype/utils/tests/test_cmd.py::TestNipypeCMD::test_main_returns_0_on_help PASSED [ 96%] 758s nipype/utils/tests/test_cmd.py::TestNipypeCMD::test_list_nipy_interfacesp PASSED [ 96%] 758s nipype/utils/tests/test_config.py::test_display_parse[:12] PASSED [ 96%] 758s nipype/utils/tests/test_config.py::test_display_parse[localhost:12] PASSED [ 96%] 758s nipype/utils/tests/test_config.py::test_display_parse[localhost:12.1] PASSED [ 96%] 758s nipype/utils/tests/test_config.py::test_display_config[0] PASSED [ 96%] 758s nipype/utils/tests/test_config.py::test_display_config[1] PASSED [ 96%] 758s nipype/utils/tests/test_config.py::test_display_config[2] PASSED [ 96%] 758s nipype/utils/tests/test_config.py::test_display_config[3] PASSED [ 96%] 758s nipype/utils/tests/test_config.py::test_display_config[4] PASSED [ 96%] 758s nipype/utils/tests/test_config.py::test_display_system[0] PASSED [ 96%] 758s nipype/utils/tests/test_config.py::test_display_system[1] PASSED [ 96%] 758s nipype/utils/tests/test_config.py::test_display_system[2] PASSED [ 96%] 758s nipype/utils/tests/test_config.py::test_display_system[3] PASSED [ 96%] 758s nipype/utils/tests/test_config.py::test_display_system[4] PASSED [ 96%] 758s nipype/utils/tests/test_config.py::test_display_config_and_system PASSED [ 97%] 758s nipype/utils/tests/test_config.py::test_display_noconfig_nosystem_patched PASSED [ 97%] 758s nipype/utils/tests/test_config.py::test_display_empty_patched PASSED [ 97%] 758s nipype/utils/tests/test_config.py::test_display_noconfig_nosystem_patched_oldxvfbwrapper PASSED [ 97%] 758s nipype/utils/tests/test_config.py::test_display_empty_patched_oldxvfbwrapper PASSED [ 97%] 758s nipype/utils/tests/test_config.py::test_display_noconfig_nosystem_notinstalled PASSED [ 97%] 758s nipype/utils/tests/test_config.py::test_display_empty_notinstalled PASSED [ 97%] 758s nipype/utils/tests/test_config.py::test_display_noconfig_nosystem_installed SKIPPED [ 97%] 758s nipype/utils/tests/test_config.py::test_display_empty_installed SKIPPED [ 97%] 758s nipype/utils/tests/test_config.py::test_display_empty_macosx PASSED [ 97%] 758s nipype/utils/tests/test_config.py::test_cwd_cached PASSED [ 97%] 758s nipype/utils/tests/test_config.py::test_debug_mode PASSED [ 97%] 758s nipype/utils/tests/test_docparse.py::test_rev_opt_map PASSED [ 97%] 758s nipype/utils/tests/test_docparse.py::test_build_doc PASSED [ 97%] 758s nipype/utils/tests/test_docparse.py::test_insert_doc PASSED [ 97%] 758s nipype/utils/tests/test_filemanip.py::test_split_filename[foo.nii-split0] PASSED [ 97%] 758s nipype/utils/tests/test_filemanip.py::test_split_filename[foo.nii.gz-split1] PASSED [ 97%] 758s nipype/utils/tests/test_filemanip.py::test_split_filename[foo.niml.dset-split2] PASSED [ 97%] 758s nipype/utils/tests/test_filemanip.py::test_split_filename[/usr/local/foo.nii.gz-split3] PASSED [ 97%] 758s nipype/utils/tests/test_filemanip.py::test_split_filename[../usr/local/foo.nii-split4] PASSED [ 97%] 758s nipype/utils/tests/test_filemanip.py::test_split_filename[/usr/local/foo.a.b.c.d-split5] PASSED [ 97%] 758s nipype/utils/tests/test_filemanip.py::test_split_filename[/usr/local/-split6] PASSED [ 97%] 758s nipype/utils/tests/test_filemanip.py::test_fname_presuffix PASSED [ 97%] 758s nipype/utils/tests/test_filemanip.py::test_fnames_presuffix PASSED [ 97%] 758s nipype/utils/tests/test_filemanip.py::test_hash_rename[foobar.nii-foobar_0xabc123.nii] PASSED [ 97%] 758s nipype/utils/tests/test_filemanip.py::test_hash_rename[foobar.nii.gz-foobar_0xabc123.nii.gz] PASSED [ 97%] 758s nipype/utils/tests/test_filemanip.py::test_check_forhash PASSED [ 97%] 758s nipype/utils/tests/test_filemanip.py::test_copyfile PASSED [ 97%] 758s nipype/utils/tests/test_filemanip.py::test_copyfile_true PASSED [ 97%] 758s nipype/utils/tests/test_filemanip.py::test_copyfiles PASSED [ 97%] 758s nipype/utils/tests/test_filemanip.py::test_linkchain PASSED [ 98%] 758s nipype/utils/tests/test_filemanip.py::test_recopy PASSED [ 98%] 758s nipype/utils/tests/test_filemanip.py::test_copyfallback SKIPPED (Fus...) [ 98%] 758s nipype/utils/tests/test_filemanip.py::test_get_related_files PASSED [ 98%] 758s nipype/utils/tests/test_filemanip.py::test_get_related_files_noninclusive PASSED [ 98%] 758s nipype/utils/tests/test_filemanip.py::test_ensure_list[foo.nii-expected0] PASSED [ 98%] 758s nipype/utils/tests/test_filemanip.py::test_ensure_list[filename1-expected1] PASSED [ 98%] 758s nipype/utils/tests/test_filemanip.py::test_ensure_list[filename2-expected2] PASSED [ 98%] 758s nipype/utils/tests/test_filemanip.py::test_ensure_list[12.34-None] PASSED [ 98%] 758s nipype/utils/tests/test_filemanip.py::test_simplify_list[list0-foo.nii] PASSED [ 98%] 758s nipype/utils/tests/test_filemanip.py::test_simplify_list[list1-expected1] PASSED [ 98%] 760s nipype/utils/tests/test_filemanip.py::test_check_depends PASSED [ 98%] 760s nipype/utils/tests/test_filemanip.py::test_json PASSED [ 98%] 760s nipype/utils/tests/test_filemanip.py::test_related_files[/path/test.img-3-expected_files0] PASSED [ 98%] 760s nipype/utils/tests/test_filemanip.py::test_related_files[/path/test.hdr-3-expected_files1] PASSED [ 98%] 760s nipype/utils/tests/test_filemanip.py::test_related_files[/path/test.BRIK-2-expected_files2] PASSED [ 98%] 760s nipype/utils/tests/test_filemanip.py::test_related_files[/path/test.HEAD-2-expected_files3] PASSED [ 98%] 760s nipype/utils/tests/test_filemanip.py::test_related_files[/path/foo.nii-2-expected_files4] PASSED [ 98%] 760s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[sysfs on /sys type sysfs (rw,nosuid,nodev,noexec,relatime)\nproc on /proc type proc (rw,nosuid,nodev,noexec,relatime)\nudev on /dev type devtmpfs (rw,nosuid,relatime,size=8121732k,nr_inodes=2030433,mode=755)\ndevpts on /dev/pts type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=000)\ntmpfs on /run type tmpfs (rw,nosuid,noexec,relatime,size=1628440k,mode=755)\n/dev/nvme0n1p2 on / type ext4 (rw,relatime,errors=remount-ro,data=ordered)\nsecurityfs on /sys/kernel/security type securityfs (rw,nosuid,nodev,noexec,relatime)\ntmpfs on /dev/shm type tmpfs (rw,nosuid,nodev)\ntmpfs on /sys/fs/cgroup type tmpfs (ro,nosuid,nodev,noexec,mode=755)\ncgroup on /sys/fs/cgroup/systemd type cgroup (rw,nosuid,nodev,noexec,relatime,xattr,release_agent=/lib/systemd/systemd-cgroups-agent,name=systemd)\npstore on /sys/fs/pstore type pstore (rw,nosuid,nodev,noexec,relatime)\nefivarfs on /sys/firmware/efi/efivars type efivarfs (rw,nosuid,nodev,noexec,relatime)\ncgroup on /sys/fs/cgroup/cpu,cpuacct type cgroup (rw,nosuid,nodev,noexec,relatime,cpu,cpuacct)\ncgroup on /sys/fs/cgroup/freezer type cgroup (rw,nosuid,nodev,noexec,relatime,freezer)\ncgroup on /sys/fs/cgroup/pids type cgroup (rw,nosuid,nodev,noexec,relatime,pids)\ncgroup on /sys/fs/cgroup/cpuset type cgroup (rw,nosuid,nodev,noexec,relatime,cpuset)\nsystemd-1 on /proc/sys/fs/binfmt_misc type autofs (rw,relatime,fd=26,pgrp=1,timeout=0,minproto=5,maxproto=5,direct)\nhugetlbfs on /dev/hugepages type hugetlbfs (rw,relatime)\ndebugfs on /sys/kernel/debug type debugfs (rw,relatime)\nmqueue on /dev/mqueue type mqueue (rw,relatime)\nfusectl on /sys/fs/fuse/connections type fusectl (rw,relatime)\n/dev/nvme0n1p1 on /boot/efi type vfat (rw,relatime,fmask=0077,dmask=0077,codepage=437,iocharset=iso8859-1,shortname=mixed,errors=remount-ro)\n/dev/nvme0n1p2 on /var/lib/docker/aufs type ext4 (rw,relatime,errors=remount-ro,data=ordered)\ngvfsd-fuse on /run/user/1002/gvfs type fuse.gvfsd-fuse (rw,nosuid,nodev,relatime,user_id=1002,group_id=1002)\n-0-expected0] PASSED [ 98%] 760s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[/dev/disk2 on / (hfs, local, journaled)\ndevfs on /dev (devfs, local, nobrowse)\nmap -hosts on /net (autofs, nosuid, automounted, nobrowse)\nmap auto_home on /home (autofs, automounted, nobrowse)\nmap -fstab on /Network/Servers (autofs, automounted, nobrowse)\n/dev/disk3s2 on /Volumes/MyBookData (hfs, local, nodev, nosuid, journaled)\nafni:/elrond0 on /Volumes/afni (nfs)\nafni:/var/www/INCOMING on /Volumes/INCOMING (nfs)\nafni:/fraid on /Volumes/afni (nfs, asynchronous)\nboromir:/raid.bot on /Volumes/raid.bot (nfs)\nelros:/volume2/AFNI_SHARE on /Volumes/AFNI_SHARE (nfs)\nmap -static on /Volumes/safni (autofs, automounted, nobrowse)\nmap -static on /Volumes/raid.top (autofs, automounted, nobrowse)\n/dev/disk1s3 on /Volumes/Boot OS X (hfs, local, journaled, nobrowse)\n-0-expected1] PASSED [ 98%] 760s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[-1-expected2] PASSED [ 98%] 760s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[sysfs on /sys type sysfs (rw,nosuid,nodev,noexec,relatime)\nproc on /proc type proc (rw,nosuid,nodev,noexec,relatime)\nudev on /dev type devtmpfs (rw,nosuid,relatime,size=8121732k,nr_inodes=2030433,mode=755)\ndevpts on /dev/pts type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=000)\ntmpfs on /run type tmpfs (rw,nosuid,noexec,relatime,size=1628440k,mode=755)\n/dev/nvme0n1p2 on / type ext4 (rw,relatime,errors=remount-ro,data=ordered)\nsecurityfs on /sys/kernel/security type securityfs (rw,nosuid,nodev,noexec,relatime)\ntmpfs on /dev/shm type tmpfs (rw,nosuid,nodev)\ntmpfs on /sys/fs/cgroup type tmpfs (ro,nosuid,nodev,noexec,mode=755)\ncgroup on /sys/fs/cgroup/systemd type cgroup (rw,nosuid,nodev,noexec,relatime,xattr,release_agent=/lib/systemd/systemd-cgroups-agent,name=systemd)\npstore on /sys/fs/pstore type pstore (rw,nosuid,nodev,noexec,relatime)\nefivarfs on /sys/firmware/efi/efivars type efivarfs (rw,nosuid,nodev,noexec,relatime)\ncgroup on /sys/fs/cgroup/cpu,cpuacct type cgroup (rw,nosuid,nodev,noexec,relatime,cpu,cpuacct)\ncgroup on /sys/fs/cgroup/freezer type cgroup (rw,nosuid,nodev,noexec,relatime,freezer)\ncgroup on /sys/fs/cgroup/pids type cgroup (rw,nosuid,nodev,noexec,relatime,pids)\ncgroup on /sys/fs/cgroup/cpuset type cgroup (rw,nosuid,nodev,noexec,relatime,cpuset)\nsystemd-1 on /proc/sys/fs/binfmt_misc type autofs (rw,relatime,fd=26,pgrp=1,timeout=0,minproto=5,maxproto=5,direct)\nhugetlbfs on /dev/hugepages type hugetlbfs (rw,relatime)\ndebugfs on /sys/kernel/debug type debugfs (rw,relatime)\nmqueue on /dev/mqueue type mqueue (rw,relatime)\nfusectl on /sys/fs/fuse/connections type fusectl (rw,relatime)\n/dev/nvme0n1p1 on /boot/efi type vfat (rw,relatime,fmask=0077,dmask=0077,codepage=437,iocharset=iso8859-1,shortname=mixed,errors=remount-ro)\n/dev/nvme0n1p2 on /var/lib/docker/aufs type ext4 (rw,relatime,errors=remount-ro,data=ordered)\ngvfsd-fuse on /run/user/1002/gvfs type fuse.gvfsd-fuse (rw,nosuid,nodev,relatime,user_id=1002,group_id=1002)\n-0-expected3] PASSED [ 98%] 760s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[/dev/disk2 on / (hfs, local, journaled)\ndevfs on /dev (devfs, local, nobrowse)\nafni:/elrond0 on /Volumes/afni (cifs)\nafni:/var/www/INCOMING on /Volumes/INCOMING (nfs)\nafni:/fraid on /Volumes/afni/fraid (nfs, asynchronous)\nboromir:/raid.bot on /Volumes/raid.bot (nfs)\nelros:/volume2/AFNI_SHARE on /Volumes/AFNI_SHARE (nfs)\n-0-expected4] PASSED [ 98%] 760s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[overlay on / type overlay (rw,relatime,lowerdir=/var/lib/docker/overlay2/l/26UTYITLF24YE7KEGTMHUNHPPG:/var/lib/docker/overlay2/l/SWGNP3T2EEB4CNBJFN3SDZLXHP,upperdir=/var/lib/docker/overlay2/a4c54ab1aa031bb5a14a424abd655510521e183ee4fa4158672e8376c89df394/diff,workdir=/var/lib/docker/overlay2/a4c54ab1aa031bb5a14a424abd655510521e183ee4fa4158672e8376c89df394/work)\nproc on /proc type proc (rw,nosuid,nodev,noexec,relatime)\ntmpfs on /dev type tmpfs (rw,nosuid,size=65536k,mode=755)\ndevpts on /dev/pts type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=666)\nsysfs on /sys type sysfs (ro,nosuid,nodev,noexec,relatime)\ntmpfs on /sys/fs/cgroup type tmpfs (ro,nosuid,nodev,noexec,relatime,mode=755)\ncpuset on /sys/fs/cgroup/cpuset type cgroup (ro,nosuid,nodev,noexec,relatime,cpuset)\ncpu on /sys/fs/cgroup/cpu type cgroup (ro,nosuid,nodev,noexec,relatime,cpu)\ncpuacct on /sys/fs/cgroup/cpuacct type cgroup (ro,nosuid,nodev,noexec,relatime,cpuacct)\nblkio on /sys/fs/cgroup/blkio type cgroup (ro,nosuid,nodev,noexec,relatime,blkio)\nmemory on /sys/fs/cgroup/memory type cgroup (ro,nosuid,nodev,noexec,relatime,memory)\ndevices on /sys/fs/cgroup/devices type cgroup (ro,nosuid,nodev,noexec,relatime,devices)\nfreezer on /sys/fs/cgroup/freezer type cgroup (ro,nosuid,nodev,noexec,relatime,freezer)\nnet_cls on /sys/fs/cgroup/net_cls type cgroup (ro,nosuid,nodev,noexec,relatime,net_cls)\nperf_event on /sys/fs/cgroup/perf_event type cgroup (ro,nosuid,nodev,noexec,relatime,perf_event)\nnet_prio on /sys/fs/cgroup/net_prio type cgroup (ro,nosuid,nodev,noexec,relatime,net_prio)\nhugetlb on /sys/fs/cgroup/hugetlb type cgroup (ro,nosuid,nodev,noexec,relatime,hugetlb)\npids on /sys/fs/cgroup/pids type cgroup (ro,nosuid,nodev,noexec,relatime,pids)\ncgroup on /sys/fs/cgroup/systemd type cgroup (ro,nosuid,nodev,noexec,relatime,name=systemd)\nmqueue on /dev/mqueue type mqueue (rw,nosuid,nodev,noexec,relatime)\n//10.0.75.1/C on /data type cifs (rw,relatime,vers=3.02,sec=ntlmsspi,cache=strict,username=filo,domain=MSI,uid=0,noforceuid,gid=0,noforcegid,addr=10.0.75.1,file_mode=0755,dir_mode=0755,iocharset=utf8,nounix,serverino,mapposix,nobrl,mfsymlinks,noperm,rsize=1048576,wsize=1048576,echo_interval=60,actimeo=1)\n/dev/sda1 on /etc/resolv.conf type ext4 (rw,relatime,data=ordered)\n/dev/sda1 on /etc/hostname type ext4 (rw,relatime,data=ordered)\n/dev/sda1 on /etc/hosts type ext4 (rw,relatime,data=ordered)\nshm on /dev/shm type tmpfs (rw,nosuid,nodev,noexec,relatime,size=65536k)\ndevpts on /dev/console type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=666)\nproc on /proc/bus type proc (ro,relatime)\nproc on /proc/fs type proc (ro,relatime)\nproc on /proc/irq type proc (ro,relatime)\nproc on /proc/sys type proc (ro,relatime)\nproc on /proc/sysrq-trigger type proc (ro,relatime)\ntmpfs on /proc/kcore type tmpfs (rw,nosuid,size=65536k,mode=755)\ntmpfs on /proc/timer_list type tmpfs (rw,nosuid,size=65536k,mode=755)\ntmpfs on /proc/sched_debug type tmpfs (rw,nosuid,size=65536k,mode=755)\ntmpfs on /proc/scsi type tmpfs (ro,relatime)\ntmpfs on /sys/firmware type tmpfs (ro,relatime)\n-0-expected5] PASSED [ 98%] 760s nipype/utils/tests/test_filemanip.py::test_parse_mount_table[/proc on /proc type proc (rw,relatime)\nsysfs on /sys type sysfs (rw,nosuid,nodev,noexec,relatime)\ntmpfs on /dev/shm type tmpfs (rw,relatime)\ndevpts on /dev/pts type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=666)\n\ndevpts on /dev/ptmx type devpts (rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=666)\n\n-0-expected6] PASSED [ 98%] 760s nipype/utils/tests/test_filemanip.py::test_cifs_check PASSED [ 98%] 760s nipype/utils/tests/test_filemanip.py::test_indirectory PASSED [ 98%] 760s nipype/utils/tests/test_filemanip.py::test_pklization PASSED [ 98%] 760s nipype/utils/tests/test_filemanip.py::test_versioned_pklization PASSED [ 98%] 760s nipype/utils/tests/test_filemanip.py::test_unversioned_pklization PASSED [ 98%] 760s nipype/utils/tests/test_filemanip.py::test_path_strict_resolve PASSED [ 99%] 760s nipype/utils/tests/test_filemanip.py::test_pickle[True] PASSED [ 99%] 760s nipype/utils/tests/test_filemanip.py::test_pickle[False] PASSED [ 99%] 760s nipype/utils/tests/test_filemanip.py::test_write_rst_list[- \n\n] PASSED [ 99%] 760s nipype/utils/tests/test_filemanip.py::test_write_rst_list[A string- A string\n\n] PASSED [ 99%] 760s nipype/utils/tests/test_filemanip.py::test_write_rst_list[items2- A list\n Of strings\n\n] PASSED [ 99%] 760s nipype/utils/tests/test_filemanip.py::test_write_rst_list[None-TypeError] PASSED [ 99%] 760s nipype/utils/tests/test_filemanip.py::test_emptydirs_dangling_nfs PASSED [ 99%] 760s nipype/utils/tests/test_functions.py::test_func_to_str PASSED [ 99%] 760s nipype/utils/tests/test_functions.py::test_func_to_str_err PASSED [ 99%] 760s nipype/utils/tests/test_functions.py::test_func_string PASSED [ 99%] 760s nipype/utils/tests/test_functions.py::test_func_print PASSED [ 99%] 760s nipype/utils/tests/test_imagemanip.py::test_copy_header[True] PASSED [ 99%] 760s nipype/utils/tests/test_imagemanip.py::test_copy_header[False] PASSED [ 99%] 760s nipype/utils/tests/test_misc.py::test_cont_to_str PASSED [ 99%] 760s nipype/utils/tests/test_misc.py::test_str2bool[yes-True] PASSED [ 99%] 760s nipype/utils/tests/test_misc.py::test_str2bool[true-True] PASSED [ 99%] 760s nipype/utils/tests/test_misc.py::test_str2bool[t-True] PASSED [ 99%] 760s nipype/utils/tests/test_misc.py::test_str2bool[1-True] PASSED [ 99%] 760s nipype/utils/tests/test_misc.py::test_str2bool[no-False] PASSED [ 99%] 760s nipype/utils/tests/test_misc.py::test_str2bool[false-False] PASSED [ 99%] 760s nipype/utils/tests/test_misc.py::test_str2bool[n-False] PASSED [ 99%] 760s nipype/utils/tests/test_misc.py::test_str2bool[f-False] PASSED [ 99%] 760s nipype/utils/tests/test_misc.py::test_str2bool[0-False] PASSED [ 99%] 760s nipype/utils/tests/test_misc.py::test_flatten PASSED [ 99%] 760s nipype/utils/tests/test_misc.py::test_rgetcwd PASSED [ 99%] 760s nipype/utils/tests/test_misc.py::test_dict_diff PASSED [ 99%] 760s nipype/utils/tests/test_nipype2boutiques.py::test_generate PASSED [ 99%] 760s nipype/utils/tests/test_provenance.py::test_provenance SKIPPED (Test...) [ 99%] 760s nipype/utils/tests/test_provenance.py::test_provenance_exists SKIPPED [ 99%] 762s nipype/utils/tests/test_provenance.py::test_safe_encode PASSED [100%] 762s 762s =================================== FAILURES =================================== 762s _______________________________ test_provenance ________________________________ 762s 762s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-1/test_provenance0') 762s 762s def test_provenance(tmpdir): 762s metawf = pe.Workflow(name="meta") 762s metawf.base_dir = tmpdir.strpath 762s metawf.add_nodes([create_wf("wf%d" % i) for i in range(1)]) 762s eg = metawf.run(plugin="Linear") 762s prov_base = tmpdir.join("workflow_provenance_test").strpath 762s > psg = write_workflow_prov(eg, prov_base, format="all") 762s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 762s 762s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/pipeline/engine/tests/test_utils.py:161: 762s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 762s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/pipeline/engine/utils.py:1609: in write_workflow_prov 762s ps.write_provenance(filename, format=format) 762s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/utils/provenance.py:455: in write_provenance 762s self.g.serialize(filename + ext, format="rdf", rdf_format=rdf_format) 762s /usr/lib/python3/dist-packages/prov/model.py:2727: in serialize 762s serializer = serializers.get(format)(self) 762s ^^^^^^^^^^^^^^^^^^^^^^^ 762s /usr/lib/python3/dist-packages/prov/serializers/__init__.py:83: in get 762s Registry.load_serializers() 762s /usr/lib/python3/dist-packages/prov/serializers/__init__.py:67: in load_serializers 762s from prov.serializers.provrdf import ProvRDFSerializer 762s /usr/lib/python3/dist-packages/prov/serializers/provrdf.py:15: in 762s from rdflib.graph import ConjunctiveGraph # type: ignore[import-not-found] 762s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 762s /usr/lib/python3/dist-packages/rdflib/__init__.py:168: in 762s from rdflib.graph import ConjunctiveGraph, Dataset, Graph 762s /usr/lib/python3/dist-packages/rdflib/graph.py:292: in 762s from rdflib.resource import Resource 762s /usr/lib/python3/dist-packages/rdflib/resource.py:296: in 762s class Resource: 762s /usr/lib/python3/dist-packages/rdflib/resource.py:379: in Resource 762s def value(self, p=RDF.value, o=None, default=None, any=True): 762s ^^^^^^^^^ 762s /usr/lib/python3/dist-packages/rdflib/namespace/__init__.py:285: in __getattr__ 762s return cls.__getitem__(name) 762s ^^^^^^^^^^^^^^^^^^^^^ 762s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 762s 762s cls = Namespace(Namespace('http://www.w3.org/1999/02/22-rdf-syntax-ns#')) 762s name = 'value', default = None 762s 762s @lru_cache(maxsize=None) 762s def __getitem__(cls, name: str, default=None) -> URIRef: 762s name = str(name) 762s 762s if name in _DFNS_RESERVED_ATTRS: 762s raise KeyError( 762s f"DefinedNamespace like object has no access item named {name!r}" 762s ) 762s elif name in _IGNORED_ATTR_LOOKUP: 762s raise KeyError() 762s if (cls._warn or cls._fail) and name not in cls: 762s if cls._fail: 762s > raise AttributeError(f"term '{name}' not in namespace '{cls._NS}'") 762s E AttributeError: term 'value' not in namespace 'http://www.w3.org/1999/02/22-rdf-syntax-ns#' 762s 762s /usr/lib/python3/dist-packages/rdflib/namespace/__init__.py:268: AttributeError 762s ----------------------------- Captured stdout call ----------------------------- 762s 260123-10:03:16,637 nipype.workflow INFO: 762s Workflow meta settings: ['check', 'execution', 'logging', 'monitoring'] 762s 260123-10:03:16,639 nipype.workflow INFO: 762s Running serially. 762s 260123-10:03:16,639 nipype.workflow INFO: 762s [Node] Setting-up "meta.wf0.proc" in "/tmp/pytest-of-ubuntu/pytest-1/test_provenance0/meta/wf0/_fwhm_0/proc". 762s 260123-10:03:16,639 nipype.workflow INFO: 762s [Node] Executing "proc" 762s 260123-10:03:16,640 nipype.workflow INFO: 762s [Node] Finished "proc", elapsed time 0.000149s. 762s 260123-10:03:16,640 nipype.workflow INFO: 762s [Node] Setting-up "meta.wf0.proc2" in "/tmp/pytest-of-ubuntu/pytest-1/test_provenance0/meta/wf0/_fwhm_0/_fwhm_0/proc2". 762s 260123-10:03:16,642 nipype.workflow INFO: 762s [Node] Executing "proc2" 762s 260123-10:03:16,642 nipype.workflow INFO: 762s [Node] Finished "proc2", elapsed time 0.000161s. 762s ------------------------------ Captured log call ------------------------------- 762s INFO nipype.workflow:workflows.py:613 Workflow meta settings: ['check', 'execution', 'logging', 'monitoring'] 762s INFO nipype.workflow:linear.py:31 Running serially. 762s INFO nipype.workflow:nodes.py:451 [Node] Setting-up "meta.wf0.proc" in "/tmp/pytest-of-ubuntu/pytest-1/test_provenance0/meta/wf0/_fwhm_0/proc". 762s INFO nipype.workflow:nodes.py:714 [Node] Executing "proc" 762s INFO nipype.workflow:nodes.py:721 [Node] Finished "proc", elapsed time 0.000149s. 762s INFO nipype.workflow:nodes.py:451 [Node] Setting-up "meta.wf0.proc2" in "/tmp/pytest-of-ubuntu/pytest-1/test_provenance0/meta/wf0/_fwhm_0/_fwhm_0/proc2". 762s INFO nipype.workflow:nodes.py:714 [Node] Executing "proc2" 762s INFO nipype.workflow:nodes.py:721 [Node] Finished "proc2", elapsed time 0.000161s. 762s =============================== warnings summary =============================== 762s ../../../usr/lib/python3/dist-packages/traits/observation/_generated_parser.py:258 762s /usr/lib/python3/dist-packages/traits/observation/_generated_parser.py:258: DeprecationWarning: module 'sre_parse' is deprecated 762s import sre_parse 762s 762s ../../../usr/lib/python3/dist-packages/traits/observation/_generated_parser.py:259 762s /usr/lib/python3/dist-packages/traits/observation/_generated_parser.py:259: DeprecationWarning: module 'sre_constants' is deprecated 762s import sre_constants 762s 762s ../../../usr/lib/python3/dist-packages/_pytest/config/__init__.py:1428 762s /usr/lib/python3/dist-packages/_pytest/config/__init__.py:1428: PytestConfigWarning: Unknown config option: env 762s 762s self._warn_or_fail_if_strict(f"Unknown config option: {key}\n") 762s 762s ../../../usr/lib/python3/dist-packages/dipy/align/streamwarp.py:15 762s /usr/lib/python3/dist-packages/dipy/align/streamwarp.py:15: UserWarning: You do not have FURY installed. Some visualization functions might not work for you. Please install or upgrade FURY using pip install -U fury. For detailed installation instructions visit: https://fury.gl/ 762s from dipy.viz.plotting import bundle_shape_profile 762s 762s nipype/pipeline/engine/tests/test_nodes.py:319 762s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/pipeline/engine/tests/test_nodes.py:319: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 762s @pytest.mark.timeout(30) 762s 762s nipype/pipeline/plugins/tests/test_oar.py:33 762s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/pipeline/plugins/tests/test_oar.py:33: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 762s @pytest.mark.timeout(60) 762s 762s nipype/pipeline/plugins/tests/test_pbs.py:32 762s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/pipeline/plugins/tests/test_pbs.py:32: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 762s @pytest.mark.timeout(60) 762s 762s nipype/utils/tests/test_provenance.py:16 762s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/utils/tests/test_provenance.py:16: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 762s @pytest.mark.timeout(60) 762s 762s nipype/utils/tests/test_provenance.py:29 762s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/utils/tests/test_provenance.py:29: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 762s @pytest.mark.timeout(60) 762s 762s nipype/workflows/__init__.py:27 762s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/workflows/__init__.py:27: UserWarning: Nipype 1 workflows have been moved to the niflow-nipype1-workflows package. pip install niflow-nipype1-workflows to continue using them. 762s warnings.warn(" ".join(_msg)) 762s 762s algorithms/tests/test_CompCor.py::TestCompCor::test_tcompcor_asymmetric_dim 762s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/algorithms/confounds.py:1453: RuntimeWarning: invalid value encountered in divide 762s variance_explained = (s**2) / np.sum(s**2) 762s 762s interfaces/ants/utils.py::nipype.interfaces.ants.utils.ImageMath 762s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/interfaces/ants/utils.py:216: UserWarning: copy_header cannot be updated to True with PadImage as operation. 762s warn( 762s 762s interfaces/dipy/tests/test_base.py::test_get_default_args 762s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/interfaces/dipy/tests/test_base.py:130: UserWarning: Pass ['new_name', 'since', 'until'] as keyword args. From version 2.0.0 passing these as positional arguments will result in an error. 762s @deprecated_params('x', None, '0.3', '0.5', alternative='test2.y') 762s 762s interfaces/dipy/tests/test_base.py::test_get_default_args 762s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/interfaces/dipy/tests/test_base.py:134: UserWarning: Pass ['new_name', 'since'] as keyword args. From version 2.0.0 passing these as positional arguments will result in an error. 762s @deprecated_params(['dummy', 'x'], None, '0.3', alternative='test2.y') 762s 762s interfaces/dipy/tests/test_base.py::test_get_default_args 762s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/interfaces/dipy/tests/test_base.py:138: UserWarning: Pass ['new_name', 'since', 'until'] as keyword args. From version 2.0.0 passing these as positional arguments will result in an error. 762s @deprecated_params(['dummy', 'x'], None, '0.3', '0.5', alternative='test2.y') 762s 762s interfaces/fsl/dti.py::nipype.interfaces.fsl.dti.ProbTrackX 762s interfaces/fsl/dti.py::nipype.interfaces.fsl.dti.ProbTrackX2 762s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/interfaces/fsl/dti.py:812: DeprecationWarning: Deprecated: Please use create_bedpostx_pipeline instead 762s warnings.warn( 762s 762s interfaces/fsl/epi.py::nipype.interfaces.fsl.epi.EPIDeWarp 762s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/interfaces/fsl/epi.py:1400: DeprecationWarning: Deprecated: Please use niflow.nipype1.workflows.dmri.preprocess.epi.sdc_fmb instead 762s warnings.warn( 762s 762s interfaces/fsl/epi.py::nipype.interfaces.fsl.epi.EddyCorrect 762s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/interfaces/fsl/epi.py:1506: DeprecationWarning: Deprecated: Please use nipype.interfaces.fsl.epi.Eddy instead 762s warnings.warn( 762s 762s interfaces/nipy/utils.py::nipype.interfaces.nipy.utils.Similarity 762s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/interfaces/nipy/utils.py:57: DeprecationWarning: This interface is deprecated since 0.10.0. Please use nipype.algorithms.metrics.Similarity 762s warnings.warn( 762s 762s pipeline/engine/tests/test_engine.py: 24 warnings 762s compilation 13:5: DeprecationWarning: nx.nx_pydot.write_dot depends on the pydot package, which has known issues and is not actively maintained. Consider using nx.nx_agraph.write_dot instead. 762s 762s See https://github.com/networkx/networkx/issues/5723 762s 762s pipeline/engine/tests/test_engine.py: 24 warnings 762s /usr/lib/python3/dist-packages/networkx/drawing/nx_pydot.py:51: DeprecationWarning: nx.nx_pydot.to_pydot depends on the pydot package, which has known issues and is not actively maintained. 762s 762s See https://github.com/networkx/networkx/issues/5723 762s P = to_pydot(G) 762s 762s utils/tests/test_misc.py::test_rgetcwd 762s /tmp/autopkgtest.ALkHf7/autopkgtest_tmp/nipype/utils/misc.py:363: UserWarning: Current folder does not exist, replacing with "/tmp/pytest-of-ubuntu/pytest-1/test_rgetcwd0" instead. 762s warn('Current folder does not exist, replacing with "%s" instead.' % cwd) 762s 762s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 762s =========================== short test summary info ============================ 762s FAILED nipype/pipeline/engine/tests/test_utils.py::test_provenance - Attribut... 762s = 1 failed, 2737 passed, 269 skipped, 2 deselected, 5 xfailed, 69 warnings in 289.92s (0:04:49) = 766s autopkgtest [10:05:02]: test run-unit-test: -----------------------] 767s run-unit-test FAIL non-zero exit status 1 767s autopkgtest [10:05:03]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 768s autopkgtest [10:05:04]: @@@@@@@@@@@@@@@@@@@@ summary 768s run-unit-test FAIL non-zero exit status 1