0s autopkgtest [21:24:31]: starting date and time: 2026-02-08 21:24:31+0000
  0s autopkgtest [21:24:31]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op
  0s autopkgtest [21:24:31]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ru3djb_k/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade mothur --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.42-2ubuntu5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-s390x-33.secgroup --name adt-resolute-s390x-mothur-20260208-212430-juju-7f2275-prod-proposed-migration-environment-20-5250418d-8f20-49b3-813a-dc70bd0243e6 --image adt/ubuntu-resolute-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-s390x -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
  3s Creating nova instance adt-resolute-s390x-mothur-20260208-212430-juju-7f2275-prod-proposed-migration-environment-20-5250418d-8f20-49b3-813a-dc70bd0243e6 from image adt/ubuntu-resolute-s390x-server-20260208.img (UUID bf8d2066-816d-4293-b7d1-06f39d3d29cb)...
114s autopkgtest [21:26:25]: testbed dpkg architecture: s390x
114s autopkgtest [21:26:25]: testbed apt version: 3.1.15
116s autopkgtest [21:26:27]: @@@@@@@@@@@@@@@@@@@@ test bed setup
116s autopkgtest [21:26:27]: testbed release detected to be: None
119s autopkgtest [21:26:30]: updating testbed package index (apt update)
120s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB]
120s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
120s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
120s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
120s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [30.0 kB]
120s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [162 kB]
120s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1569 kB]
120s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x Packages [239 kB]
120s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe s390x Packages [1406 kB]
120s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse s390x Packages [7992 B]
123s Fetched 3539 kB in 3s (1152 kB/s)
128s Reading package lists...
132s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease
132s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
132s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
132s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
137s Reading package lists...
138s Reading package lists...
139s Building dependency tree...
139s Reading state information...
142s Calculating upgrade...
142s The following packages will be upgraded:
142s   dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common
142s   dbus-user-session ethtool libbsd0 libc-bin libc-gconv-modules-extra libc6
142s   libdbus-1-3 libgdbm-compat4t64 libgdbm6t64 libidn2-0 libjansson4
142s   libnetfilter-conntrack3 libusb-1.0-0 libwrap0 libxau6 libxkbcommon0 locales
142s   shared-mime-info ubuntu-kernel-accessories ubuntu-standard
142s 25 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
142s Need to get 9727 kB of archives.
142s After this operation, 2317 kB disk space will be freed.
142s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x libc-gconv-modules-extra s390x 2.42-2ubuntu5 [1369 kB]
143s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x libc6 s390x 2.42-2ubuntu5 [1623 kB]
145s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x libc-bin s390x 2.42-2ubuntu5 [674 kB]
145s Get:4 http://ftpmaster.internal/ubuntu resolute/main s390x libbsd0 s390x 0.12.2-2build2 [47.0 kB]
145s Get:5 http://ftpmaster.internal/ubuntu resolute/main s390x dbus-system-bus-common all 1.16.2-2ubuntu3 [55.8 kB]
145s Get:6 http://ftpmaster.internal/ubuntu resolute/main s390x dbus-session-bus-common all 1.16.2-2ubuntu3 [54.4 kB]
145s Get:7 http://ftpmaster.internal/ubuntu resolute/main s390x dbus-user-session s390x 1.16.2-2ubuntu3 [9696 B]
145s Get:8 http://ftpmaster.internal/ubuntu resolute/main s390x dbus-daemon s390x 1.16.2-2ubuntu3 [116 kB]
145s Get:9 http://ftpmaster.internal/ubuntu resolute/main s390x dbus-bin s390x 1.16.2-2ubuntu3 [41.6 kB]
145s Get:10 http://ftpmaster.internal/ubuntu resolute/main s390x dbus s390x 1.16.2-2ubuntu3 [24.1 kB]
145s Get:11 http://ftpmaster.internal/ubuntu resolute/main s390x libdbus-1-3 s390x 1.16.2-2ubuntu3 [185 kB]
145s Get:12 http://ftpmaster.internal/ubuntu resolute/main s390x ethtool s390x 1:6.15-3build1 [303 kB]
145s Get:13 http://ftpmaster.internal/ubuntu resolute/main s390x libidn2-0 s390x 2.3.8-4build1 [67.9 kB]
145s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x locales all 2.42-2ubuntu5 [4255 kB]
146s Get:15 http://ftpmaster.internal/ubuntu resolute/main s390x shared-mime-info s390x 2.4-5build3 [473 kB]
146s Get:16 http://ftpmaster.internal/ubuntu resolute/main s390x libgdbm6t64 s390x 1.26-1build1 [37.7 kB]
146s Get:17 http://ftpmaster.internal/ubuntu resolute/main s390x libjansson4 s390x 2.14-2build4 [33.0 kB]
146s Get:18 http://ftpmaster.internal/ubuntu resolute/main s390x libnetfilter-conntrack3 s390x 1.1.1-1 [46.7 kB]
146s Get:19 http://ftpmaster.internal/ubuntu resolute/main s390x libusb-1.0-0 s390x 2:1.0.29-2build1 [54.6 kB]
146s Get:20 http://ftpmaster.internal/ubuntu resolute/main s390x libxau6 s390x 1:1.0.11-1build2 [7410 B]
146s Get:21 http://ftpmaster.internal/ubuntu resolute/main s390x libxkbcommon0 s390x 1.13.1-1 [165 kB]
146s Get:22 http://ftpmaster.internal/ubuntu resolute/main s390x ubuntu-standard s390x 1.564 [13.3 kB]
146s Get:23 http://ftpmaster.internal/ubuntu resolute/main s390x libgdbm-compat4t64 s390x 1.26-1build1 [6972 B]
146s Get:24 http://ftpmaster.internal/ubuntu resolute/main s390x libwrap0 s390x 7.6.q-36build2 [48.5 kB]
146s Get:25 http://ftpmaster.internal/ubuntu resolute/main s390x ubuntu-kernel-accessories s390x 1.564 [13.1 kB]
150s dpkg-preconfigure: unable to re-open stdin: No such file or directory
150s Fetched 9727 kB in 4s (2433 kB/s)
155s (Reading database ... 
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(Reading database ... 88711 files and directories currently installed.)
155s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_s390x.deb ...
155s Unpacking libc-gconv-modules-extra:s390x (2.42-2ubuntu5) over (2.42-2ubuntu4) ...
156s Setting up libc-gconv-modules-extra:s390x (2.42-2ubuntu5) ...
157s (Reading database ... 
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(Reading database ... 88711 files and directories currently installed.)
157s Preparing to unpack .../libc6_2.42-2ubuntu5_s390x.deb ...
158s Unpacking libc6:s390x (2.42-2ubuntu5) over (2.42-2ubuntu4) ...
160s Setting up libc6:s390x (2.42-2ubuntu5) ...
162s (Reading database ... 
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(Reading database ... 88711 files and directories currently installed.)
162s Preparing to unpack .../libc-bin_2.42-2ubuntu5_s390x.deb ...
162s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ...
165s Setting up libc-bin (2.42-2ubuntu5) ...
166s (Reading database ... 
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(Reading database ... 88711 files and directories currently installed.)
166s Preparing to unpack .../00-libbsd0_0.12.2-2build2_s390x.deb ...
166s Unpacking libbsd0:s390x (0.12.2-2build2) over (0.12.2-2build1) ...
167s Preparing to unpack .../01-dbus-system-bus-common_1.16.2-2ubuntu3_all.deb ...
167s Unpacking dbus-system-bus-common (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ...
168s Preparing to unpack .../02-dbus-session-bus-common_1.16.2-2ubuntu3_all.deb ...
168s Unpacking dbus-session-bus-common (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ...
168s Preparing to unpack .../03-dbus-user-session_1.16.2-2ubuntu3_s390x.deb ...
168s Unpacking dbus-user-session (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ...
169s Preparing to unpack .../04-dbus-daemon_1.16.2-2ubuntu3_s390x.deb ...
169s Unpacking dbus-daemon (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ...
170s Preparing to unpack .../05-dbus-bin_1.16.2-2ubuntu3_s390x.deb ...
170s Unpacking dbus-bin (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ...
171s Preparing to unpack .../06-dbus_1.16.2-2ubuntu3_s390x.deb ...
171s Unpacking dbus (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ...
172s Preparing to unpack .../07-libdbus-1-3_1.16.2-2ubuntu3_s390x.deb ...
172s Unpacking libdbus-1-3:s390x (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ...
172s Preparing to unpack .../08-ethtool_1%3a6.15-3build1_s390x.deb ...
172s Unpacking ethtool (1:6.15-3build1) over (1:6.15-3) ...
173s Preparing to unpack .../09-libidn2-0_2.3.8-4build1_s390x.deb ...
173s Unpacking libidn2-0:s390x (2.3.8-4build1) over (2.3.8-4) ...
173s Preparing to unpack .../10-locales_2.42-2ubuntu5_all.deb ...
173s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ...
178s Preparing to unpack .../11-shared-mime-info_2.4-5build3_s390x.deb ...
178s Unpacking shared-mime-info (2.4-5build3) over (2.4-5build2) ...
182s Preparing to unpack .../12-libgdbm6t64_1.26-1build1_s390x.deb ...
182s Unpacking libgdbm6t64:s390x (1.26-1build1) over (1.26-1) ...
182s Preparing to unpack .../13-libjansson4_2.14-2build4_s390x.deb ...
183s Unpacking libjansson4:s390x (2.14-2build4) over (2.14-2build3) ...
183s Preparing to unpack .../14-libnetfilter-conntrack3_1.1.1-1_s390x.deb ...
183s Unpacking libnetfilter-conntrack3:s390x (1.1.1-1) over (1.1.0-1build1) ...
184s Preparing to unpack .../15-libusb-1.0-0_2%3a1.0.29-2build1_s390x.deb ...
184s Unpacking libusb-1.0-0:s390x (2:1.0.29-2build1) over (2:1.0.29-2) ...
185s Preparing to unpack .../16-libxau6_1%3a1.0.11-1build2_s390x.deb ...
185s Unpacking libxau6:s390x (1:1.0.11-1build2) over (1:1.0.11-1build1) ...
185s Preparing to unpack .../17-libxkbcommon0_1.13.1-1_s390x.deb ...
185s Unpacking libxkbcommon0:s390x (1.13.1-1) over (1.12.3-1) ...
185s Preparing to unpack .../18-ubuntu-standard_1.564_s390x.deb ...
185s Unpacking ubuntu-standard (1.564) over (1.563) ...
186s Preparing to unpack .../19-libgdbm-compat4t64_1.26-1build1_s390x.deb ...
186s Unpacking libgdbm-compat4t64:s390x (1.26-1build1) over (1.26-1) ...
187s Preparing to unpack .../20-libwrap0_7.6.q-36build2_s390x.deb ...
187s Unpacking libwrap0:s390x (7.6.q-36build2) over (7.6.q-36build1) ...
187s Preparing to unpack .../21-ubuntu-kernel-accessories_1.564_s390x.deb ...
187s Unpacking ubuntu-kernel-accessories (1.564) over (1.563) ...
190s Setting up libxau6:s390x (1:1.0.11-1build2) ...
190s Setting up ubuntu-kernel-accessories (1.564) ...
190s Setting up libgdbm6t64:s390x (1.26-1build1) ...
190s Setting up libgdbm-compat4t64:s390x (1.26-1build1) ...
190s Setting up libidn2-0:s390x (2.3.8-4build1) ...
190s Setting up ubuntu-standard (1.564) ...
191s Setting up locales (2.42-2ubuntu5) ...
195s Generating locales (this might take a while)...
203s   en_US.UTF-8... done
203s Generation complete.
205s Setting up libjansson4:s390x (2.14-2build4) ...
205s Setting up libwrap0:s390x (7.6.q-36build2) ...
205s Setting up libdbus-1-3:s390x (1.16.2-2ubuntu3) ...
205s Setting up shared-mime-info (2.4-5build3) ...
223s Setting up libnetfilter-conntrack3:s390x (1.1.1-1) ...
223s Setting up dbus-session-bus-common (1.16.2-2ubuntu3) ...
223s Setting up libusb-1.0-0:s390x (2:1.0.29-2build1) ...
223s Setting up dbus-system-bus-common (1.16.2-2ubuntu3) ...
223s Setting up libbsd0:s390x (0.12.2-2build2) ...
223s Setting up dbus-bin (1.16.2-2ubuntu3) ...
223s Setting up ethtool (1:6.15-3build1) ...
223s Setting up libxkbcommon0:s390x (1.13.1-1) ...
223s Setting up dbus-daemon (1.16.2-2ubuntu3) ...
223s Setting up dbus-user-session (1.16.2-2ubuntu3) ...
223s Setting up dbus (1.16.2-2ubuntu3) ...
223s A reboot is required to replace the running dbus-daemon.
223s Please reboot the system when convenient.
224s Processing triggers for systemd (259-1ubuntu3) ...
228s Processing triggers for man-db (2.13.1-1build1) ...
253s Processing triggers for libc-bin (2.42-2ubuntu5) ...
255s autopkgtest [21:28:46]: upgrading testbed (apt dist-upgrade and autopurge)
255s Reading package lists...
256s Building dependency tree...
256s Reading state information...
256s Calculating upgrade...
257s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
258s Reading package lists...
259s Building dependency tree...
259s Reading state information...
260s Solving dependencies...
262s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
262s autopkgtest [21:28:52]: rebooting testbed after setup commands that affected boot
402s autopkgtest [21:31:13]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP Fri Jan 23 19:02:49 UTC 2026
408s autopkgtest [21:31:19]: @@@@@@@@@@@@@@@@@@@@ apt-source mothur
414s Get:1 http://ftpmaster.internal/ubuntu resolute/universe mothur 1.48.1-1build1 (dsc) [2074 B]
414s Get:2 http://ftpmaster.internal/ubuntu resolute/universe mothur 1.48.1-1build1 (tar) [1654 kB]
414s Get:3 http://ftpmaster.internal/ubuntu resolute/universe mothur 1.48.1-1build1 (diff) [21.7 kB]
416s gpgv: Signature made Mon Jan 26 19:31:04 2026 UTC
416s gpgv:                using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2
416s gpgv: Can't check signature: No public key
416s dpkg-source: warning: cannot verify inline signature for ./mothur_1.48.1-1build1.dsc: no acceptable signature found
418s autopkgtest [21:31:29]: testing package mothur version 1.48.1-1build1
418s autopkgtest [21:31:29]: build not needed
420s autopkgtest [21:31:31]: test run-unit-test: preparing testbed
421s Reading package lists...
422s Building dependency tree...
423s Reading state information...
423s Solving dependencies...
423s The following NEW packages will be installed:
423s   mothur
424s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
424s Need to get 4916 kB of archives.
424s After this operation, 13.9 MB of additional disk space will be used.
424s Get:1 http://ftpmaster.internal/ubuntu resolute/universe s390x mothur s390x 1.48.1-1build1 [4916 kB]
427s Fetched 4916 kB in 1s (7690 kB/s)
427s Selecting previously unselected package mothur.
430s (Reading database ... 
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(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 88628 files and directories currently installed.)
430s Preparing to unpack .../mothur_1.48.1-1build1_s390x.deb ...
430s Unpacking mothur (1.48.1-1build1) ...
430s Setting up mothur (1.48.1-1build1) ...
430s Processing triggers for man-db (2.13.1-1build1) ...
442s autopkgtest [21:31:53]: test run-unit-test: [-----------------------
442s Linux version
442s 
442s Using ReadLine
442s mothur v.1.48.1
442s Last updated: 5/15/24
442s by
442s Patrick D. Schloss
442s 
442s Department of Microbiology & Immunology
442s 
442s University of Michigan
442s http://www.mothur.org
442s 
442s When using, please cite:
442s Schloss, P.D., et al., Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol, 2009. 75(23):7537-41.
442s 
442s Distributed under the GNU General Public License
442s 
442s Type 'help()' for information on the commands that are available
442s 
442s For questions and analysis support, please visit our forum at https://forum.mothur.org
442s 
442s Type 'quit()' to exit program
442s 
442s [NOTE]: Setting random seed to 19760620.
442s 
442s Batch Mode
442s 
442s 
442s 
442s mothur > unique.seqs(fasta=HA.fasta)
442s 599	259
442s 
442s Output File Names: 
442s HA.unique.fasta
442s HA.count_table
442s 
443s 
443s mothur > dist.seqs(fasta=HA.unique.fasta, countends=F, cutoff=0.01)
443s 
443s Using 2 processors.
443s 
443s Sequence	Time	Num_Dists_Below_Cutoff
443s 0	0	0
443s 200	0	3443
443s 100	0	5025
443s 182	1	16617
443s 258	1	15965
443s 
443s It took 1 secs to find distances for 259 sequences. 32582 distances below cutoff 0.01.
443s 
443s 
443s Output File Names: 
443s HA.unique.dist
443s 
443s 
443s mothur > cluster(method=furthest, column=HA.unique.dist, count=current, cutoff=0.01, precision=1000)
443s Using HA.count_table as input file for the count parameter.
443s 
443s Using 2 processors.
443s unique	154	211	18	2	6	0	4	2	0	2	0	0	0	1	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
443s 0.001	155	161	28	5	3	4	2	4	0	0	1	0	1	0	1	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
443s 0.002	206	56	9	8	2	0	4	2	2	0	0	0	0	0	2	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
443s 0.003	236	26	4	2	1	1	0	2	2	1	0	0	0	0	1	1	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
443s 0.004	270	15	3	0	1	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
443s 0.005	272	7	2	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
443s 0.006	274	5	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
443s 0.007	274	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
443s 0.008	552	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
443s 0.009	592	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
443s It took 0 seconds to cluster
443s 
443s Output File Names: 
443s HA.unique.fn.list
443s 
443s 
443s mothur > summary.single(list=HA.unique.fn.list, calc=nseqs-sobs-chao, label=unique-0.001-0.003-0.005-0.008)
443s unique
443s 0.001
443s 0.003
443s 0.005
443s 0.008
443s 
443s Output File Names: 
443s HA.unique.fn.summary
443s 
443s 
443s mothur > heatmap.bin(scale=linear, label=unique-0.001-0.003)
443s Using HA.unique.fn.list as input file for the list parameter.
443s unique
443s 0.001
443s 0.003
443s 
443s Output File Names: 
443s HA.unique.fn.unique.heatmap.bin.svg
443s HA.unique.fn.0.001.heatmap.bin.svg
443s HA.unique.fn.0.003.heatmap.bin.svg
443s HA.unique.fn.0.004.heatmap.bin.svg
443s HA.unique.fn.0.005.heatmap.bin.svg
443s HA.unique.fn.0.006.heatmap.bin.svg
443s HA.unique.fn.0.007.heatmap.bin.svg
443s HA.unique.fn.0.008.heatmap.bin.svg
443s HA.unique.fn.0.009.heatmap.bin.svg
443s 
445s 
445s mothur > rarefaction.single(calc=sobs-chao, label=unique-0.001-0.003, freq=10)
445s Using HA.unique.fn.list as input file for the list parameter.
445s 
445s Using 2 processors.
445s unique
445s 0.001
445s 0.003
445s 
445s It took 2 secs to run rarefaction.single.
445s 
445s Output File Names: 
445s HA.unique.fn.rarefaction
445s HA.unique.fn.r_chao
445s 
445s 
445s mothur > quit()
445s 
445s 
445s It took 3 seconds to run 7 commands from test.batch batch file.
445s 
445s Logfile : mothur.1770586394.logfile
445s 
445s autopkgtest [21:31:56]: test run-unit-test: -----------------------]
446s run-unit-test        PASS
446s autopkgtest [21:31:57]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
447s autopkgtest [21:31:58]: @@@@@@@@@@@@@@@@@@@@ summary
447s run-unit-test        PASS