0s autopkgtest [01:01:49]: starting date and time: 2025-10-20 01:01:49+0000 0s autopkgtest [01:01:49]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [01:01:49]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.579y1lqn/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:node-jquery --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=node-jquery/3.7.1+dfsg+~3.5.33-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-10.secgroup --name adt-resolute-s390x-lammps-20251020-010149-juju-7f2275-prod-proposed-migration-environment-15-3759ba76-85f6-4ba9-bf5d-157171f7af86 --image adt/ubuntu-resolute-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-s390x-lammps-20251020-010149-juju-7f2275-prod-proposed-migration-environment-15-3759ba76-85f6-4ba9-bf5d-157171f7af86 from image adt/ubuntu-resolute-s390x-server-20251019.img (UUID 7a83b4ca-2eb3-4cb0-b8d6-be2f16efcb4e)... 55s autopkgtest [01:02:44]: testbed dpkg architecture: s390x 56s autopkgtest [01:02:45]: testbed apt version: 3.1.8ubuntu1 56s autopkgtest [01:02:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup 56s autopkgtest [01:02:45]: testbed release detected to be: None 58s autopkgtest [01:02:46]: updating testbed package index (apt update) 58s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 58s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 58s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 58s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 58s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [51.0 kB] 58s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [450 kB] 58s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [15.8 kB] 58s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 58s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x Packages [103 kB] 58s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted s390x Packages [940 B] 58s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe s390x Packages [257 kB] 58s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse s390x Packages [6184 B] 58s Fetched 971 kB in 1s (904 kB/s) 59s Reading package lists... 59s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 60s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 60s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 60s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 60s Reading package lists... 60s Reading package lists... 60s Building dependency tree... 60s Reading state information... 61s Calculating upgrade... 61s The following packages will be upgraded: 61s distro-info-data dpkg dpkg-dev libaudit-common libaudit1 libdpkg-perl 61s libseccomp2 libsemanage-common libsemanage2 python-apt-common python3-apt 61s python3-cffi-backend 61s 12 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 61s Need to get 3223 kB of archives. 61s After this operation, 652 kB of additional disk space will be used. 61s Get:1 http://ftpmaster.internal/ubuntu resolute/main s390x dpkg s390x 1.22.21ubuntu4 [1287 kB] 62s Get:2 http://ftpmaster.internal/ubuntu resolute/main s390x libaudit-common all 1:4.0.5-1build2 [6596 B] 62s Get:3 http://ftpmaster.internal/ubuntu resolute/main s390x libaudit1 s390x 1:4.0.5-1build2 [57.0 kB] 62s Get:4 http://ftpmaster.internal/ubuntu resolute/main s390x libsemanage-common all 3.8.1-1build1 [7916 B] 62s Get:5 http://ftpmaster.internal/ubuntu resolute/main s390x libsemanage2 s390x 3.8.1-1build1 [99.1 kB] 62s Get:6 http://ftpmaster.internal/ubuntu resolute/main s390x distro-info-data all 0.68 [7378 B] 62s Get:7 http://ftpmaster.internal/ubuntu resolute/main s390x libseccomp2 s390x 2.6.0-2ubuntu3 [57.5 kB] 62s Get:8 http://ftpmaster.internal/ubuntu resolute/main s390x python-apt-common all 3.0.0ubuntu2 [21.7 kB] 62s Get:9 http://ftpmaster.internal/ubuntu resolute/main s390x python3-apt s390x 3.0.0ubuntu2 [198 kB] 62s Get:10 http://ftpmaster.internal/ubuntu resolute/main s390x python3-cffi-backend s390x 1.17.1-3build1 [113 kB] 62s Get:11 http://ftpmaster.internal/ubuntu resolute/main s390x dpkg-dev all 1.22.21ubuntu4 [1088 kB] 62s Get:12 http://ftpmaster.internal/ubuntu resolute/main s390x libdpkg-perl all 1.22.21ubuntu4 [280 kB] 62s dpkg-preconfigure: unable to re-open stdin: No such file or directory 62s Fetched 3223 kB in 1s (2834 kB/s) 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56852 files and directories currently installed.) 62s Preparing to unpack .../dpkg_1.22.21ubuntu4_s390x.deb ... 62s Unpacking dpkg (1.22.21ubuntu4) over (1.22.21ubuntu3) ... 62s Setting up dpkg (1.22.21ubuntu4) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56852 files and directories currently installed.) 63s Preparing to unpack .../libaudit-common_1%3a4.0.5-1build2_all.deb ... 63s Unpacking libaudit-common (1:4.0.5-1build2) over (1:4.0.5-1build1) ... 63s Setting up libaudit-common (1:4.0.5-1build2) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56852 files and directories currently installed.) 63s Preparing to unpack .../libaudit1_1%3a4.0.5-1build2_s390x.deb ... 63s Unpacking libaudit1:s390x (1:4.0.5-1build2) over (1:4.0.5-1build1) ... 63s Setting up libaudit1:s390x (1:4.0.5-1build2) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56852 files and directories currently installed.) 63s Preparing to unpack .../0-libsemanage-common_3.8.1-1build1_all.deb ... 63s Unpacking libsemanage-common (3.8.1-1build1) over (3.8.1-1) ... 63s Preparing to unpack .../1-libsemanage2_3.8.1-1build1_s390x.deb ... 63s Unpacking libsemanage2:s390x (3.8.1-1build1) over (3.8.1-1) ... 63s Preparing to unpack .../2-distro-info-data_0.68_all.deb ... 63s Unpacking distro-info-data (0.68) over (0.67~ubuntu1) ... 63s Preparing to unpack .../3-libseccomp2_2.6.0-2ubuntu3_s390x.deb ... 63s Unpacking libseccomp2:s390x (2.6.0-2ubuntu3) over (2.6.0-2ubuntu2) ... 63s Preparing to unpack .../4-python-apt-common_3.0.0ubuntu2_all.deb ... 63s Unpacking python-apt-common (3.0.0ubuntu2) over (3.0.0ubuntu1) ... 63s Preparing to unpack .../5-python3-apt_3.0.0ubuntu2_s390x.deb ... 63s Unpacking python3-apt (3.0.0ubuntu2) over (3.0.0ubuntu1) ... 63s Preparing to unpack .../6-python3-cffi-backend_1.17.1-3build1_s390x.deb ... 63s Unpacking python3-cffi-backend:s390x (1.17.1-3build1) over (1.17.1-3) ... 63s Preparing to unpack .../7-dpkg-dev_1.22.21ubuntu4_all.deb ... 63s Unpacking dpkg-dev (1.22.21ubuntu4) over (1.22.21ubuntu3) ... 63s Preparing to unpack .../8-libdpkg-perl_1.22.21ubuntu4_all.deb ... 63s Unpacking libdpkg-perl (1.22.21ubuntu4) over (1.22.21ubuntu3) ... 63s Setting up distro-info-data (0.68) ... 63s Setting up libsemanage-common (3.8.1-1build1) ... 63s Setting up libseccomp2:s390x (2.6.0-2ubuntu3) ... 63s Setting up libdpkg-perl (1.22.21ubuntu4) ... 63s Setting up python-apt-common (3.0.0ubuntu2) ... 63s Setting up libsemanage2:s390x (3.8.1-1build1) ... 63s Setting up python3-cffi-backend:s390x (1.17.1-3build1) ... 63s Setting up python3-apt (3.0.0ubuntu2) ... 63s Setting up dpkg-dev (1.22.21ubuntu4) ... 63s Processing triggers for man-db (2.13.1-1) ... 65s Processing triggers for libc-bin (2.42-0ubuntu3) ... 65s autopkgtest [01:02:54]: upgrading testbed (apt dist-upgrade and autopurge) 65s Reading package lists... 65s Building dependency tree... 65s Reading state information... 65s Calculating upgrade... 65s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 66s Reading package lists... 66s Building dependency tree... 66s Reading state information... 66s Solving dependencies... 66s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 66s autopkgtest [01:02:55]: rebooting testbed after setup commands that affected boot 80s autopkgtest [01:03:09]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP Mon Sep 22 08:56:47 UTC 2025 83s autopkgtest [01:03:12]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 92s Get:1 http://ftpmaster.internal/ubuntu resolute/universe lammps 20250204+dfsg.1-2 (dsc) [3212 B] 92s Get:2 http://ftpmaster.internal/ubuntu resolute/universe lammps 20250204+dfsg.1-2 (tar) [132 MB] 92s Get:3 http://ftpmaster.internal/ubuntu resolute/universe lammps 20250204+dfsg.1-2 (diff) [17.3 kB] 92s gpgv: Signature made Mon Mar 3 06:11:14 2025 UTC 92s gpgv: using RSA key BBBD45EA818AB86FF67E7285D3E17383CFA7FF06 92s gpgv: Can't check signature: No public key 92s dpkg-source: warning: cannot verify inline signature for ./lammps_20250204+dfsg.1-2.dsc: no acceptable signature found 99s autopkgtest [01:03:28]: testing package lammps version 20250204+dfsg.1-2 99s autopkgtest [01:03:28]: build not needed 170s autopkgtest [01:04:39]: test crack: preparing testbed 170s Reading package lists... 170s Building dependency tree... 170s Reading state information... 170s Solving dependencies... 170s The following NEW packages will be installed: 170s fontconfig-config fonts-dejavu-core fonts-dejavu-mono lammps lammps-data 170s libaec0 libblas3 libcairo2 libdeflate0 libdouble-conversion3 libdrm-amdgpu1 170s libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 170s libfftw3-double3 libfontconfig1 libfreetype6 libgbm1 libgfortran5 libgl1 170s libgl1-mesa-dri libgl2ps1.4 libglew2.2 libglvnd0 libglx-mesa0 libglx0 170s libgomp1 libhdf5-310 libhdf5-hl-310 libhwloc-plugins libhwloc15 libjbig0 170s libjpeg-turbo8 libjpeg8 libjsoncpp26 libkim-api2 liblammps0t64 liblapack3 170s libnetcdf22 libogg0 libopengl0 libopenmpi40 libpciaccess0 libpixman-1-0 170s libpnetcdf6 libproj25 librdmacm1t64 libsharpyuv0 libsz2 libtbb12 170s libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheoradec1 libtheoraenc1 libtiff6 170s libtk8.6 libvoro++1 libvtk9.3 libvulkan1 libwebp7 libx11-xcb1 libxcb-dri3-0 170s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 170s libxcb-sync1 libxcb-xfixes0 libxft2 libxnvctrl0 libxrender1 libxshmfence1 170s libxss1 libxxf86vm1 mesa-libgallium mpi-default-bin ocl-icd-libopencl1 170s openmpi-bin openmpi-common proj-data x11-common 171s 0 upgraded, 83 newly installed, 0 to remove and 0 not upgraded. 171s Need to get 83.3 MB of archives. 171s After this operation, 372 MB of additional disk space will be used. 171s Get:1 http://ftpmaster.internal/ubuntu resolute/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 171s Get:2 http://ftpmaster.internal/ubuntu resolute/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 171s Get:3 http://ftpmaster.internal/ubuntu resolute/main s390x fontconfig-config s390x 2.15.0-2.3ubuntu1 [38.1 kB] 171s Get:4 http://ftpmaster.internal/ubuntu resolute/universe s390x lammps-data all 20250204+dfsg.1-2 [10.2 MB] 172s Get:5 http://ftpmaster.internal/ubuntu resolute/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 172s Get:6 http://ftpmaster.internal/ubuntu resolute/main s390x libblas3 s390x 3.12.1-6build1 [245 kB] 172s Get:7 http://ftpmaster.internal/ubuntu resolute/main s390x libfreetype6 s390x 2.13.3+dfsg-1build1 [430 kB] 172s Get:8 http://ftpmaster.internal/ubuntu resolute/main s390x libfontconfig1 s390x 2.15.0-2.3ubuntu1 [149 kB] 172s Get:9 http://ftpmaster.internal/ubuntu resolute/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 172s Get:10 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-render0 s390x 1.17.0-2build1 [16.9 kB] 172s Get:11 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-shm0 s390x 1.17.0-2build1 [5916 B] 172s Get:12 http://ftpmaster.internal/ubuntu resolute/main s390x libxrender1 s390x 1:0.9.12-1 [20.9 kB] 172s Get:13 http://ftpmaster.internal/ubuntu resolute/main s390x libcairo2 s390x 1.18.4-1build1 [580 kB] 172s Get:14 http://ftpmaster.internal/ubuntu resolute/main s390x libdeflate0 s390x 1.23-2 [46.0 kB] 172s Get:15 http://ftpmaster.internal/ubuntu resolute/universe s390x libdouble-conversion3 s390x 3.3.1-1build1 [43.5 kB] 172s Get:16 http://ftpmaster.internal/ubuntu resolute/main s390x libdrm-amdgpu1 s390x 2.4.125-1 [21.8 kB] 172s Get:17 http://ftpmaster.internal/ubuntu resolute/main s390x libevent-core-2.1-7t64 s390x 2.1.12-stable-10build1 [93.1 kB] 172s Get:18 http://ftpmaster.internal/ubuntu resolute/main s390x libevent-pthreads-2.1-7t64 s390x 2.1.12-stable-10build1 [8060 B] 172s Get:19 http://ftpmaster.internal/ubuntu resolute/main s390x librdmacm1t64 s390x 56.1-1ubuntu1 [73.6 kB] 172s Get:20 http://ftpmaster.internal/ubuntu resolute/universe s390x libfabric1 s390x 2.1.0-1.1 [640 kB] 172s Get:21 http://ftpmaster.internal/ubuntu resolute/main s390x libgomp1 s390x 15.2.0-5ubuntu1 [154 kB] 172s Get:22 http://ftpmaster.internal/ubuntu resolute/main s390x libfftw3-double3 s390x 3.3.10-2fakesync1build2 [512 kB] 172s Get:23 http://ftpmaster.internal/ubuntu resolute/main s390x libx11-xcb1 s390x 2:1.8.12-1build1 [7972 B] 172s Get:24 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-dri3-0 s390x 1.17.0-2build1 [7688 B] 172s Get:25 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-present0 s390x 1.17.0-2build1 [6346 B] 172s Get:26 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-randr0 s390x 1.17.0-2build1 [19.0 kB] 172s Get:27 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-sync1 s390x 1.17.0-2build1 [9530 B] 172s Get:28 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-xfixes0 s390x 1.17.0-2build1 [10.6 kB] 172s Get:29 http://ftpmaster.internal/ubuntu resolute/main s390x libxshmfence1 s390x 1.3.3-1 [5202 B] 172s Get:30 http://ftpmaster.internal/ubuntu resolute/main s390x mesa-libgallium s390x 25.2.3-1ubuntu1 [8319 kB] 173s Get:31 http://ftpmaster.internal/ubuntu resolute/main s390x libgbm1 s390x 25.2.3-1ubuntu1 [34.7 kB] 173s Get:32 http://ftpmaster.internal/ubuntu resolute/main s390x libgfortran5 s390x 15.2.0-5ubuntu1 [629 kB] 173s Get:33 http://ftpmaster.internal/ubuntu resolute/main s390x libvulkan1 s390x 1.4.321.0-1 [147 kB] 173s Get:34 http://ftpmaster.internal/ubuntu resolute/main s390x libgl1-mesa-dri s390x 25.2.3-1ubuntu1 [36.0 kB] 173s Get:35 http://ftpmaster.internal/ubuntu resolute/main s390x libglvnd0 s390x 1.7.0-1build2 [107 kB] 173s Get:36 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-glx0 s390x 1.17.0-2build1 [25.6 kB] 173s Get:37 http://ftpmaster.internal/ubuntu resolute/main s390x libxxf86vm1 s390x 1:1.1.4-1build4 [9630 B] 173s Get:38 http://ftpmaster.internal/ubuntu resolute/main s390x libglx-mesa0 s390x 25.2.3-1ubuntu1 [114 kB] 173s Get:39 http://ftpmaster.internal/ubuntu resolute/main s390x libglx0 s390x 1.7.0-1build2 [30.9 kB] 173s Get:40 http://ftpmaster.internal/ubuntu resolute/main s390x libgl1 s390x 1.7.0-1build2 [135 kB] 173s Get:41 http://ftpmaster.internal/ubuntu resolute/universe s390x libgl2ps1.4 s390x 1.4.2+dfsg1-2build1 [44.1 kB] 173s Get:42 http://ftpmaster.internal/ubuntu resolute/universe s390x libglew2.2 s390x 2.2.0-4build1 [195 kB] 173s Get:43 http://ftpmaster.internal/ubuntu resolute/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 173s Get:44 http://ftpmaster.internal/ubuntu resolute/universe s390x libhdf5-310 s390x 1.14.5+repack-3build1 [1477 kB] 173s Get:45 http://ftpmaster.internal/ubuntu resolute/universe s390x libhdf5-hl-310 s390x 1.14.5+repack-3build1 [61.1 kB] 173s Get:46 http://ftpmaster.internal/ubuntu resolute/universe s390x libhwloc15 s390x 2.12.2-1 [175 kB] 173s Get:47 http://ftpmaster.internal/ubuntu resolute/main s390x libjpeg-turbo8 s390x 2.1.5-4ubuntu2 [147 kB] 173s Get:48 http://ftpmaster.internal/ubuntu resolute/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 173s Get:49 http://ftpmaster.internal/ubuntu resolute/main s390x libjsoncpp26 s390x 1.9.6-3 [80.8 kB] 173s Get:50 http://ftpmaster.internal/ubuntu resolute/universe s390x libkim-api2 s390x 2.3.0-1ubuntu1 [602 kB] 173s Get:51 http://ftpmaster.internal/ubuntu resolute/main s390x liblapack3 s390x 3.12.1-6build1 [2910 kB] 173s Get:52 http://ftpmaster.internal/ubuntu resolute/universe s390x libnetcdf22 s390x 1:4.9.3-1build1 [583 kB] 173s Get:53 http://ftpmaster.internal/ubuntu resolute/main s390x libpciaccess0 s390x 0.18.1-1ubuntu2 [19.1 kB] 173s Get:54 http://ftpmaster.internal/ubuntu resolute/main s390x libxnvctrl0 s390x 510.47.03-0ubuntu4 [12.7 kB] 173s Get:55 http://ftpmaster.internal/ubuntu resolute/main s390x ocl-icd-libopencl1 s390x 2.3.3-1 [44.9 kB] 173s Get:56 http://ftpmaster.internal/ubuntu resolute/universe s390x libhwloc-plugins s390x 2.12.2-1 [15.9 kB] 173s Get:57 http://ftpmaster.internal/ubuntu resolute/universe s390x libopenmpi40 s390x 5.0.8-8ubuntu1 [2907 kB] 173s Get:58 http://ftpmaster.internal/ubuntu resolute/universe s390x libpnetcdf6 s390x 1.14.0-2 [1172 kB] 173s Get:59 http://ftpmaster.internal/ubuntu resolute/universe s390x libvoro++1 s390x 0.5+revert-to-0.4.6+dfsg1-1 [110 kB] 173s Get:60 http://ftpmaster.internal/ubuntu resolute/main s390x libogg0 s390x 1.3.5-3build1 [24.4 kB] 173s Get:61 http://ftpmaster.internal/ubuntu resolute/main s390x libopengl0 s390x 1.7.0-1build2 [44.9 kB] 173s Get:62 http://ftpmaster.internal/ubuntu resolute/universe s390x proj-data all 9.6.0-1 [7955 kB] 174s Get:63 http://ftpmaster.internal/ubuntu resolute/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 174s Get:64 http://ftpmaster.internal/ubuntu resolute/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 174s Get:65 http://ftpmaster.internal/ubuntu resolute/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 174s Get:66 http://ftpmaster.internal/ubuntu resolute/main s390x libtiff6 s390x 4.7.0-3ubuntu3 [222 kB] 174s Get:67 http://ftpmaster.internal/ubuntu resolute/universe s390x libproj25 s390x 9.6.0-1 [1467 kB] 174s Get:68 http://ftpmaster.internal/ubuntu resolute/universe s390x libtbbbind-2-5 s390x 2022.1.0-1 [14.7 kB] 174s Get:69 http://ftpmaster.internal/ubuntu resolute/universe s390x libtbbmalloc2 s390x 2022.1.0-1 [58.4 kB] 174s Get:70 http://ftpmaster.internal/ubuntu resolute/universe s390x libtbb12 s390x 2022.1.0-1 [100 kB] 174s Get:71 http://ftpmaster.internal/ubuntu resolute/main s390x libtcl8.6 s390x 8.6.17+dfsg-1 [1034 kB] 174s Get:72 http://ftpmaster.internal/ubuntu resolute/main s390x libtheoradec1 s390x 1.2.0~alpha1+dfsg-6 [68.6 kB] 174s Get:73 http://ftpmaster.internal/ubuntu resolute/main s390x libtheoraenc1 s390x 1.2.0~alpha1+dfsg-6 [142 kB] 174s Get:74 http://ftpmaster.internal/ubuntu resolute/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 174s Get:75 http://ftpmaster.internal/ubuntu resolute/main s390x x11-common all 1:7.7+24ubuntu1 [22.4 kB] 174s Get:76 http://ftpmaster.internal/ubuntu resolute/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 174s Get:77 http://ftpmaster.internal/ubuntu resolute/main s390x libtk8.6 s390x 8.6.17-1 [828 kB] 174s Get:78 http://ftpmaster.internal/ubuntu resolute/universe s390x libvtk9.3 s390x 9.3.0+dfsg1-4ubuntu2 [27.1 MB] 174s Get:79 http://ftpmaster.internal/ubuntu resolute/universe s390x liblammps0t64 s390x 20250204+dfsg.1-2 [8532 kB] 175s Get:80 http://ftpmaster.internal/ubuntu resolute/universe s390x openmpi-common all 5.0.8-8ubuntu1 [108 kB] 175s Get:81 http://ftpmaster.internal/ubuntu resolute/universe s390x openmpi-bin s390x 5.0.8-8ubuntu1 [199 kB] 175s Get:82 http://ftpmaster.internal/ubuntu resolute/universe s390x mpi-default-bin s390x 1.18 [2510 B] 175s Get:83 http://ftpmaster.internal/ubuntu resolute/universe s390x lammps s390x 20250204+dfsg.1-2 [15.5 kB] 175s Fetched 83.3 MB in 5s (17.8 MB/s) 175s Selecting previously unselected package fonts-dejavu-mono. 175s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56857 files and directories currently installed.) 175s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 175s Unpacking fonts-dejavu-mono (2.37-8) ... 175s Selecting previously unselected package fonts-dejavu-core. 176s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 176s Unpacking fonts-dejavu-core (2.37-8) ... 176s Selecting previously unselected package fontconfig-config. 176s Preparing to unpack .../02-fontconfig-config_2.15.0-2.3ubuntu1_s390x.deb ... 176s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 176s Selecting previously unselected package lammps-data. 176s Preparing to unpack .../03-lammps-data_20250204+dfsg.1-2_all.deb ... 176s Unpacking lammps-data (20250204+dfsg.1-2) ... 176s Selecting previously unselected package libaec0:s390x. 176s Preparing to unpack .../04-libaec0_1.1.3-1_s390x.deb ... 176s Unpacking libaec0:s390x (1.1.3-1) ... 176s Selecting previously unselected package libblas3:s390x. 176s Preparing to unpack .../05-libblas3_3.12.1-6build1_s390x.deb ... 176s Unpacking libblas3:s390x (3.12.1-6build1) ... 176s Selecting previously unselected package libfreetype6:s390x. 176s Preparing to unpack .../06-libfreetype6_2.13.3+dfsg-1build1_s390x.deb ... 176s Unpacking libfreetype6:s390x (2.13.3+dfsg-1build1) ... 176s Selecting previously unselected package libfontconfig1:s390x. 176s Preparing to unpack .../07-libfontconfig1_2.15.0-2.3ubuntu1_s390x.deb ... 176s Unpacking libfontconfig1:s390x (2.15.0-2.3ubuntu1) ... 176s Selecting previously unselected package libpixman-1-0:s390x. 176s Preparing to unpack .../08-libpixman-1-0_0.44.0-3_s390x.deb ... 176s Unpacking libpixman-1-0:s390x (0.44.0-3) ... 176s Selecting previously unselected package libxcb-render0:s390x. 176s Preparing to unpack .../09-libxcb-render0_1.17.0-2build1_s390x.deb ... 176s Unpacking libxcb-render0:s390x (1.17.0-2build1) ... 176s Selecting previously unselected package libxcb-shm0:s390x. 176s Preparing to unpack .../10-libxcb-shm0_1.17.0-2build1_s390x.deb ... 176s Unpacking libxcb-shm0:s390x (1.17.0-2build1) ... 176s Selecting previously unselected package libxrender1:s390x. 176s Preparing to unpack .../11-libxrender1_1%3a0.9.12-1_s390x.deb ... 176s Unpacking libxrender1:s390x (1:0.9.12-1) ... 176s Selecting previously unselected package libcairo2:s390x. 176s Preparing to unpack .../12-libcairo2_1.18.4-1build1_s390x.deb ... 176s Unpacking libcairo2:s390x (1.18.4-1build1) ... 176s Selecting previously unselected package libdeflate0:s390x. 176s Preparing to unpack .../13-libdeflate0_1.23-2_s390x.deb ... 176s Unpacking libdeflate0:s390x (1.23-2) ... 176s Selecting previously unselected package libdouble-conversion3:s390x. 176s Preparing to unpack .../14-libdouble-conversion3_3.3.1-1build1_s390x.deb ... 176s Unpacking libdouble-conversion3:s390x (3.3.1-1build1) ... 176s Selecting previously unselected package libdrm-amdgpu1:s390x. 176s Preparing to unpack .../15-libdrm-amdgpu1_2.4.125-1_s390x.deb ... 176s Unpacking libdrm-amdgpu1:s390x (2.4.125-1) ... 176s Selecting previously unselected package libevent-core-2.1-7t64:s390x. 176s Preparing to unpack .../16-libevent-core-2.1-7t64_2.1.12-stable-10build1_s390x.deb ... 176s Unpacking libevent-core-2.1-7t64:s390x (2.1.12-stable-10build1) ... 176s Selecting previously unselected package libevent-pthreads-2.1-7t64:s390x. 176s Preparing to unpack .../17-libevent-pthreads-2.1-7t64_2.1.12-stable-10build1_s390x.deb ... 176s Unpacking libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-10build1) ... 176s Selecting previously unselected package librdmacm1t64:s390x. 176s Preparing to unpack .../18-librdmacm1t64_56.1-1ubuntu1_s390x.deb ... 176s Unpacking librdmacm1t64:s390x (56.1-1ubuntu1) ... 176s Selecting previously unselected package libfabric1:s390x. 176s Preparing to unpack .../19-libfabric1_2.1.0-1.1_s390x.deb ... 176s Unpacking libfabric1:s390x (2.1.0-1.1) ... 176s Selecting previously unselected package libgomp1:s390x. 176s Preparing to unpack .../20-libgomp1_15.2.0-5ubuntu1_s390x.deb ... 176s Unpacking libgomp1:s390x (15.2.0-5ubuntu1) ... 176s Selecting previously unselected package libfftw3-double3:s390x. 176s Preparing to unpack .../21-libfftw3-double3_3.3.10-2fakesync1build2_s390x.deb ... 176s Unpacking libfftw3-double3:s390x (3.3.10-2fakesync1build2) ... 176s Selecting previously unselected package libx11-xcb1:s390x. 176s Preparing to unpack .../22-libx11-xcb1_2%3a1.8.12-1build1_s390x.deb ... 176s Unpacking libx11-xcb1:s390x (2:1.8.12-1build1) ... 176s Selecting previously unselected package libxcb-dri3-0:s390x. 176s Preparing to unpack .../23-libxcb-dri3-0_1.17.0-2build1_s390x.deb ... 176s Unpacking libxcb-dri3-0:s390x (1.17.0-2build1) ... 176s Selecting previously unselected package libxcb-present0:s390x. 176s Preparing to unpack .../24-libxcb-present0_1.17.0-2build1_s390x.deb ... 176s Unpacking libxcb-present0:s390x (1.17.0-2build1) ... 176s Selecting previously unselected package libxcb-randr0:s390x. 176s Preparing to unpack .../25-libxcb-randr0_1.17.0-2build1_s390x.deb ... 176s Unpacking libxcb-randr0:s390x (1.17.0-2build1) ... 176s Selecting previously unselected package libxcb-sync1:s390x. 176s Preparing to unpack .../26-libxcb-sync1_1.17.0-2build1_s390x.deb ... 176s Unpacking libxcb-sync1:s390x (1.17.0-2build1) ... 176s Selecting previously unselected package libxcb-xfixes0:s390x. 176s Preparing to unpack .../27-libxcb-xfixes0_1.17.0-2build1_s390x.deb ... 176s Unpacking libxcb-xfixes0:s390x (1.17.0-2build1) ... 176s Selecting previously unselected package libxshmfence1:s390x. 176s Preparing to unpack .../28-libxshmfence1_1.3.3-1_s390x.deb ... 176s Unpacking libxshmfence1:s390x (1.3.3-1) ... 176s Selecting previously unselected package mesa-libgallium:s390x. 176s Preparing to unpack .../29-mesa-libgallium_25.2.3-1ubuntu1_s390x.deb ... 176s Unpacking mesa-libgallium:s390x (25.2.3-1ubuntu1) ... 176s Selecting previously unselected package libgbm1:s390x. 176s Preparing to unpack .../30-libgbm1_25.2.3-1ubuntu1_s390x.deb ... 176s Unpacking libgbm1:s390x (25.2.3-1ubuntu1) ... 176s Selecting previously unselected package libgfortran5:s390x. 176s Preparing to unpack .../31-libgfortran5_15.2.0-5ubuntu1_s390x.deb ... 176s Unpacking libgfortran5:s390x (15.2.0-5ubuntu1) ... 176s Selecting previously unselected package libvulkan1:s390x. 176s Preparing to unpack .../32-libvulkan1_1.4.321.0-1_s390x.deb ... 176s Unpacking libvulkan1:s390x (1.4.321.0-1) ... 176s Selecting previously unselected package libgl1-mesa-dri:s390x. 176s Preparing to unpack .../33-libgl1-mesa-dri_25.2.3-1ubuntu1_s390x.deb ... 176s Unpacking libgl1-mesa-dri:s390x (25.2.3-1ubuntu1) ... 176s Selecting previously unselected package libglvnd0:s390x. 176s Preparing to unpack .../34-libglvnd0_1.7.0-1build2_s390x.deb ... 176s Unpacking libglvnd0:s390x (1.7.0-1build2) ... 176s Selecting previously unselected package libxcb-glx0:s390x. 176s Preparing to unpack .../35-libxcb-glx0_1.17.0-2build1_s390x.deb ... 176s Unpacking libxcb-glx0:s390x (1.17.0-2build1) ... 176s Selecting previously unselected package libxxf86vm1:s390x. 176s Preparing to unpack .../36-libxxf86vm1_1%3a1.1.4-1build4_s390x.deb ... 176s Unpacking libxxf86vm1:s390x (1:1.1.4-1build4) ... 176s Selecting previously unselected package libglx-mesa0:s390x. 176s Preparing to unpack .../37-libglx-mesa0_25.2.3-1ubuntu1_s390x.deb ... 176s Unpacking libglx-mesa0:s390x (25.2.3-1ubuntu1) ... 176s Selecting previously unselected package libglx0:s390x. 176s Preparing to unpack .../38-libglx0_1.7.0-1build2_s390x.deb ... 176s Unpacking libglx0:s390x (1.7.0-1build2) ... 176s Selecting previously unselected package libgl1:s390x. 176s Preparing to unpack .../39-libgl1_1.7.0-1build2_s390x.deb ... 176s Unpacking libgl1:s390x (1.7.0-1build2) ... 176s Selecting previously unselected package libgl2ps1.4. 176s Preparing to unpack .../40-libgl2ps1.4_1.4.2+dfsg1-2build1_s390x.deb ... 176s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 176s Selecting previously unselected package libglew2.2:s390x. 176s Preparing to unpack .../41-libglew2.2_2.2.0-4build1_s390x.deb ... 176s Unpacking libglew2.2:s390x (2.2.0-4build1) ... 176s Selecting previously unselected package libsz2:s390x. 176s Preparing to unpack .../42-libsz2_1.1.3-1_s390x.deb ... 176s Unpacking libsz2:s390x (1.1.3-1) ... 176s Selecting previously unselected package libhdf5-310:s390x. 176s Preparing to unpack .../43-libhdf5-310_1.14.5+repack-3build1_s390x.deb ... 176s Unpacking libhdf5-310:s390x (1.14.5+repack-3build1) ... 177s Selecting previously unselected package libhdf5-hl-310:s390x. 177s Preparing to unpack .../44-libhdf5-hl-310_1.14.5+repack-3build1_s390x.deb ... 177s Unpacking libhdf5-hl-310:s390x (1.14.5+repack-3build1) ... 177s Selecting previously unselected package libhwloc15:s390x. 177s Preparing to unpack .../45-libhwloc15_2.12.2-1_s390x.deb ... 177s Unpacking libhwloc15:s390x (2.12.2-1) ... 177s Selecting previously unselected package libjpeg-turbo8:s390x. 177s Preparing to unpack .../46-libjpeg-turbo8_2.1.5-4ubuntu2_s390x.deb ... 177s Unpacking libjpeg-turbo8:s390x (2.1.5-4ubuntu2) ... 177s Selecting previously unselected package libjpeg8:s390x. 177s Preparing to unpack .../47-libjpeg8_8c-2ubuntu11_s390x.deb ... 177s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 177s Selecting previously unselected package libjsoncpp26:s390x. 177s Preparing to unpack .../48-libjsoncpp26_1.9.6-3_s390x.deb ... 177s Unpacking libjsoncpp26:s390x (1.9.6-3) ... 177s Selecting previously unselected package libkim-api2:s390x. 177s Preparing to unpack .../49-libkim-api2_2.3.0-1ubuntu1_s390x.deb ... 177s Unpacking libkim-api2:s390x (2.3.0-1ubuntu1) ... 177s Selecting previously unselected package liblapack3:s390x. 177s Preparing to unpack .../50-liblapack3_3.12.1-6build1_s390x.deb ... 177s Unpacking liblapack3:s390x (3.12.1-6build1) ... 177s Selecting previously unselected package libnetcdf22:s390x. 177s Preparing to unpack .../51-libnetcdf22_1%3a4.9.3-1build1_s390x.deb ... 177s Unpacking libnetcdf22:s390x (1:4.9.3-1build1) ... 177s Selecting previously unselected package libpciaccess0:s390x. 177s Preparing to unpack .../52-libpciaccess0_0.18.1-1ubuntu2_s390x.deb ... 177s Unpacking libpciaccess0:s390x (0.18.1-1ubuntu2) ... 177s Selecting previously unselected package libxnvctrl0:s390x. 177s Preparing to unpack .../53-libxnvctrl0_510.47.03-0ubuntu4_s390x.deb ... 177s Unpacking libxnvctrl0:s390x (510.47.03-0ubuntu4) ... 177s Selecting previously unselected package ocl-icd-libopencl1:s390x. 177s Preparing to unpack .../54-ocl-icd-libopencl1_2.3.3-1_s390x.deb ... 177s Unpacking ocl-icd-libopencl1:s390x (2.3.3-1) ... 177s Selecting previously unselected package libhwloc-plugins:s390x. 177s Preparing to unpack .../55-libhwloc-plugins_2.12.2-1_s390x.deb ... 177s Unpacking libhwloc-plugins:s390x (2.12.2-1) ... 177s Selecting previously unselected package libopenmpi40:s390x. 177s Preparing to unpack .../56-libopenmpi40_5.0.8-8ubuntu1_s390x.deb ... 177s Unpacking libopenmpi40:s390x (5.0.8-8ubuntu1) ... 177s Selecting previously unselected package libpnetcdf6:s390x. 177s Preparing to unpack .../57-libpnetcdf6_1.14.0-2_s390x.deb ... 177s Unpacking libpnetcdf6:s390x (1.14.0-2) ... 177s Selecting previously unselected package libvoro++1. 177s Preparing to unpack .../58-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_s390x.deb ... 177s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 177s Selecting previously unselected package libogg0:s390x. 177s Preparing to unpack .../59-libogg0_1.3.5-3build1_s390x.deb ... 177s Unpacking libogg0:s390x (1.3.5-3build1) ... 177s Selecting previously unselected package libopengl0:s390x. 177s Preparing to unpack .../60-libopengl0_1.7.0-1build2_s390x.deb ... 177s Unpacking libopengl0:s390x (1.7.0-1build2) ... 177s Selecting previously unselected package proj-data. 177s Preparing to unpack .../61-proj-data_9.6.0-1_all.deb ... 177s Unpacking proj-data (9.6.0-1) ... 177s Selecting previously unselected package libjbig0:s390x. 177s Preparing to unpack .../62-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 177s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 177s Selecting previously unselected package libsharpyuv0:s390x. 177s Preparing to unpack .../63-libsharpyuv0_1.5.0-0.1_s390x.deb ... 177s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ... 177s Selecting previously unselected package libwebp7:s390x. 177s Preparing to unpack .../64-libwebp7_1.5.0-0.1_s390x.deb ... 177s Unpacking libwebp7:s390x (1.5.0-0.1) ... 177s Selecting previously unselected package libtiff6:s390x. 177s Preparing to unpack .../65-libtiff6_4.7.0-3ubuntu3_s390x.deb ... 177s Unpacking libtiff6:s390x (4.7.0-3ubuntu3) ... 177s Selecting previously unselected package libproj25:s390x. 177s Preparing to unpack .../66-libproj25_9.6.0-1_s390x.deb ... 177s Unpacking libproj25:s390x (9.6.0-1) ... 177s Selecting previously unselected package libtbbbind-2-5:s390x. 177s Preparing to unpack .../67-libtbbbind-2-5_2022.1.0-1_s390x.deb ... 177s Unpacking libtbbbind-2-5:s390x (2022.1.0-1) ... 177s Selecting previously unselected package libtbbmalloc2:s390x. 177s Preparing to unpack .../68-libtbbmalloc2_2022.1.0-1_s390x.deb ... 177s Unpacking libtbbmalloc2:s390x (2022.1.0-1) ... 177s Selecting previously unselected package libtbb12:s390x. 177s Preparing to unpack .../69-libtbb12_2022.1.0-1_s390x.deb ... 177s Unpacking libtbb12:s390x (2022.1.0-1) ... 177s Selecting previously unselected package libtcl8.6:s390x. 177s Preparing to unpack .../70-libtcl8.6_8.6.17+dfsg-1_s390x.deb ... 177s Unpacking libtcl8.6:s390x (8.6.17+dfsg-1) ... 177s Selecting previously unselected package libtheoradec1:s390x. 177s Preparing to unpack .../71-libtheoradec1_1.2.0~alpha1+dfsg-6_s390x.deb ... 177s Unpacking libtheoradec1:s390x (1.2.0~alpha1+dfsg-6) ... 177s Selecting previously unselected package libtheoraenc1:s390x. 177s Preparing to unpack .../72-libtheoraenc1_1.2.0~alpha1+dfsg-6_s390x.deb ... 177s Unpacking libtheoraenc1:s390x (1.2.0~alpha1+dfsg-6) ... 177s Selecting previously unselected package libxft2:s390x. 177s Preparing to unpack .../73-libxft2_2.3.6-1build1_s390x.deb ... 177s Unpacking libxft2:s390x (2.3.6-1build1) ... 177s Selecting previously unselected package x11-common. 177s Preparing to unpack .../74-x11-common_1%3a7.7+24ubuntu1_all.deb ... 177s Unpacking x11-common (1:7.7+24ubuntu1) ... 177s Selecting previously unselected package libxss1:s390x. 177s Preparing to unpack .../75-libxss1_1%3a1.2.3-1build3_s390x.deb ... 177s Unpacking libxss1:s390x (1:1.2.3-1build3) ... 177s Selecting previously unselected package libtk8.6:s390x. 177s Preparing to unpack .../76-libtk8.6_8.6.17-1_s390x.deb ... 177s Unpacking libtk8.6:s390x (8.6.17-1) ... 177s Selecting previously unselected package libvtk9.3:s390x. 177s Preparing to unpack .../77-libvtk9.3_9.3.0+dfsg1-4ubuntu2_s390x.deb ... 177s Unpacking libvtk9.3:s390x (9.3.0+dfsg1-4ubuntu2) ... 178s Selecting previously unselected package liblammps0t64:s390x. 178s Preparing to unpack .../78-liblammps0t64_20250204+dfsg.1-2_s390x.deb ... 178s Unpacking liblammps0t64:s390x (20250204+dfsg.1-2) ... 178s Selecting previously unselected package openmpi-common. 178s Preparing to unpack .../79-openmpi-common_5.0.8-8ubuntu1_all.deb ... 178s Unpacking openmpi-common (5.0.8-8ubuntu1) ... 178s Selecting previously unselected package openmpi-bin. 178s Preparing to unpack .../80-openmpi-bin_5.0.8-8ubuntu1_s390x.deb ... 178s Unpacking openmpi-bin (5.0.8-8ubuntu1) ... 178s Selecting previously unselected package mpi-default-bin. 178s Preparing to unpack .../81-mpi-default-bin_1.18_s390x.deb ... 178s Unpacking mpi-default-bin (1.18) ... 178s Selecting previously unselected package lammps. 178s Preparing to unpack .../82-lammps_20250204+dfsg.1-2_s390x.deb ... 178s Unpacking lammps (20250204+dfsg.1-2) ... 178s Setting up libxcb-dri3-0:s390x (1.17.0-2build1) ... 178s Setting up libtbbmalloc2:s390x (2022.1.0-1) ... 178s Setting up libpixman-1-0:s390x (0.44.0-3) ... 178s Setting up libsharpyuv0:s390x (1.5.0-0.1) ... 178s Setting up libx11-xcb1:s390x (2:1.8.12-1build1) ... 178s Setting up libpciaccess0:s390x (0.18.1-1ubuntu2) ... 178s Setting up libdouble-conversion3:s390x (3.3.1-1build1) ... 178s Setting up libxcb-xfixes0:s390x (1.17.0-2build1) ... 178s Setting up libogg0:s390x (1.3.5-3build1) ... 178s Setting up proj-data (9.6.0-1) ... 178s Setting up libxrender1:s390x (1:0.9.12-1) ... 178s Setting up lammps-data (20250204+dfsg.1-2) ... 178s Setting up libxcb-render0:s390x (1.17.0-2build1) ... 178s Setting up libglvnd0:s390x (1.7.0-1build2) ... 178s Setting up libxcb-glx0:s390x (1.17.0-2build1) ... 178s Setting up x11-common (1:7.7+24ubuntu1) ... 178s Setting up libdeflate0:s390x (1.23-2) ... 178s Setting up libxcb-shm0:s390x (1.17.0-2build1) ... 178s Setting up libgomp1:s390x (15.2.0-5ubuntu1) ... 178s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 178s Setting up libaec0:s390x (1.1.3-1) ... 178s Setting up libopengl0:s390x (1.7.0-1build2) ... 178s Setting up libxxf86vm1:s390x (1:1.1.4-1build4) ... 178s Setting up libxnvctrl0:s390x (510.47.03-0ubuntu4) ... 178s Setting up libxcb-present0:s390x (1.17.0-2build1) ... 178s Setting up libtheoraenc1:s390x (1.2.0~alpha1+dfsg-6) ... 178s Setting up libblas3:s390x (3.12.1-6build1) ... 178s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 178s Setting up libfreetype6:s390x (2.13.3+dfsg-1build1) ... 178s Setting up libxcb-sync1:s390x (1.17.0-2build1) ... 178s Setting up libjsoncpp26:s390x (1.9.6-3) ... 178s Setting up fonts-dejavu-mono (2.37-8) ... 178s Setting up libhwloc15:s390x (2.12.2-1) ... 178s Setting up libtcl8.6:s390x (8.6.17+dfsg-1) ... 178s Setting up fonts-dejavu-core (2.37-8) ... 178s Setting up libjpeg-turbo8:s390x (2.1.5-4ubuntu2) ... 178s Setting up libfftw3-double3:s390x (3.3.10-2fakesync1build2) ... 178s Setting up libgfortran5:s390x (15.2.0-5ubuntu1) ... 178s Setting up libvulkan1:s390x (1.4.321.0-1) ... 178s Setting up libwebp7:s390x (1.5.0-0.1) ... 178s Setting up ocl-icd-libopencl1:s390x (2.3.3-1) ... 178s Setting up libxshmfence1:s390x (1.3.3-1) ... 178s Setting up libxcb-randr0:s390x (1.17.0-2build1) ... 178s Setting up openmpi-common (5.0.8-8ubuntu1) ... 178s Setting up librdmacm1t64:s390x (56.1-1ubuntu1) ... 178s Setting up libevent-core-2.1-7t64:s390x (2.1.12-stable-10build1) ... 178s Setting up libxss1:s390x (1:1.2.3-1build3) ... 178s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 178s Setting up libsz2:s390x (1.1.3-1) ... 178s Setting up libdrm-amdgpu1:s390x (2.4.125-1) ... 178s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 178s Setting up libfabric1:s390x (2.1.0-1.1) ... 178s Setting up mesa-libgallium:s390x (25.2.3-1ubuntu1) ... 178s Setting up liblapack3:s390x (3.12.1-6build1) ... 178s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 178s Setting up libgbm1:s390x (25.2.3-1ubuntu1) ... 178s Setting up libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-10build1) ... 178s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 178s Setting up libgl1-mesa-dri:s390x (25.2.3-1ubuntu1) ... 178s Setting up libkim-api2:s390x (2.3.0-1ubuntu1) ... 178s Setting up libhwloc-plugins:s390x (2.12.2-1) ... 178s Setting up libtbbbind-2-5:s390x (2022.1.0-1) ... 178s Setting up libhdf5-310:s390x (1.14.5+repack-3build1) ... 178s Setting up libtiff6:s390x (4.7.0-3ubuntu3) ... 178s Setting up libfontconfig1:s390x (2.15.0-2.3ubuntu1) ... 178s Setting up libopenmpi40:s390x (5.0.8-8ubuntu1) ... 178s Setting up libhdf5-hl-310:s390x (1.14.5+repack-3build1) ... 178s Setting up libxft2:s390x (2.3.6-1build1) ... 178s Setting up libglx-mesa0:s390x (25.2.3-1ubuntu1) ... 178s Setting up libglx0:s390x (1.7.0-1build2) ... 178s Setting up libproj25:s390x (9.6.0-1) ... 178s Setting up libpnetcdf6:s390x (1.14.0-2) ... 178s Setting up libtk8.6:s390x (8.6.17-1) ... 178s Setting up libnetcdf22:s390x (1:4.9.3-1build1) ... 178s Setting up libtbb12:s390x (2022.1.0-1) ... 178s Setting up libcairo2:s390x (1.18.4-1build1) ... 178s Setting up libgl1:s390x (1.7.0-1build2) ... 178s Setting up libtheoradec1:s390x (1.2.0~alpha1+dfsg-6) ... 178s Setting up libglew2.2:s390x (2.2.0-4build1) ... 178s Setting up openmpi-bin (5.0.8-8ubuntu1) ... 178s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 178s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 178s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 178s Setting up mpi-default-bin (1.18) ... 178s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 178s Setting up libvtk9.3:s390x (9.3.0+dfsg1-4ubuntu2) ... 178s Setting up liblammps0t64:s390x (20250204+dfsg.1-2) ... 178s Setting up lammps (20250204+dfsg.1-2) ... 178s Processing triggers for man-db (2.13.1-1) ... 179s Processing triggers for libc-bin (2.42-0ubuntu3) ... 180s autopkgtest [01:04:49]: test crack: [----------------------- 180s LAMMPS (4 Feb 2025) 180s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 180s using 1 OpenMP thread(s) per MPI task 180s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 180s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 180s 2 by 1 by 1 MPI processor grid 180s Created 8141 atoms 180s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 180s create_atoms CPU = 0.000 seconds 180s 302 atoms in group lower 180s 302 atoms in group upper 180s 604 atoms in group boundary 180s 7537 atoms in group mobile 180s 841 atoms in group leftupper 180s 841 atoms in group leftlower 180s Setting atom values ... 180s 841 settings made for type 180s Setting atom values ... 180s 841 settings made for type 180s Setting atom values ... 180s 302 settings made for type 180s Setting atom values ... 180s 302 settings made for type 180s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 180s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 180s Neighbor list info ... 180s update: every = 1 steps, delay = 5 steps, check = yes 180s max neighbors/atom: 2000, page size: 100000 180s master list distance cutoff = 2.8 180s ghost atom cutoff = 2.8 180s binsize = 1.4, bins = 80 56 1 180s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 180s (1) pair lj/cut, perpetual 180s attributes: half, newton on 180s pair build: half/bin/atomonly/newton 180s stencil: half/bin/2d 180s bin: standard 180s Setting up Verlet run ... 180s Unit style : lj 180s Current step : 0 180s Time step : 0.003 180s Per MPI rank memory allocation (min/avg/max) = 3.097 | 3.097 | 3.097 Mbytes 180s Step Temp E_pair E_mol TotEng Press Volume 180s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 180s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 181s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 181s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 181s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 181s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 181s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 181s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 181s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 181s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 181s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 182s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 182s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 182s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 182s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 182s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 182s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 183s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 183s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 183s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 183s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 183s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 183s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 183s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 184s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 184s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 184s Loop time of 3.36368 on 2 procs for 5000 steps with 8141 atoms 184s 184s Performance: 385292.400 tau/day, 1486.468 timesteps/s, 12.101 Matom-step/s 184s 87.8% CPU use with 2 MPI tasks x 1 OpenMP threads 184s 184s MPI task timing breakdown: 184s Section | min time | avg time | max time |%varavg| %total 184s --------------------------------------------------------------- 184s Pair | 2.3938 | 2.4535 | 2.5131 | 3.8 | 72.94 184s Neigh | 0.13748 | 0.14348 | 0.14948 | 1.6 | 4.27 184s Comm | 0.28041 | 0.34446 | 0.4085 | 10.9 | 10.24 184s Output | 0.0010081 | 0.0027293 | 0.0044506 | 3.3 | 0.08 184s Modify | 0.26056 | 0.26637 | 0.27218 | 1.1 | 7.92 184s Other | | 0.1532 | | | 4.55 184s 184s Nlocal: 4070.5 ave 4085 max 4056 min 184s Histogram: 1 0 0 0 0 0 0 0 0 1 184s Nghost: 207 ave 208 max 206 min 184s Histogram: 1 0 0 0 0 0 0 0 0 1 184s Neighs: 35700 ave 35927 max 35473 min 184s Histogram: 1 0 0 0 0 0 0 0 0 1 184s 184s Total # of neighbors = 71400 184s Ave neighs/atom = 8.7704213 184s Neighbor list builds = 106 184s Dangerous builds = 0 184s Total wall time: 0:00:03 184s LAMMPS (4 Feb 2025) 189s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 189s using 1 OpenMP thread(s) per MPI task 189s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 189s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 189s 1 by 1 by 1 MPI processor grid 189s Created 8141 atoms 189s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 189s create_atoms CPU = 0.001 seconds 189s 302 atoms in group lower 189s 302 atoms in group upper 189s 604 atoms in group boundary 189s 7537 atoms in group mobile 189s 841 atoms in group leftupper 189s 841 atoms in group leftlower 189s Setting atom values ... 189s 841 settings made for type 189s Setting atom values ... 189s 841 settings made for type 189s Setting atom values ... 189s 302 settings made for type 189s Setting atom values ... 189s 302 settings made for type 189s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 189s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 189s Neighbor list info ... 189s update: every = 1 steps, delay = 5 steps, check = yes 189s max neighbors/atom: 2000, page size: 100000 189s master list distance cutoff = 2.8 189s ghost atom cutoff = 2.8 189s binsize = 1.4, bins = 80 56 1 189s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 189s (1) pair lj/cut, perpetual 189s attributes: half, newton on 189s pair build: half/bin/atomonly/newton 189s stencil: half/bin/2d 189s bin: standard 189s Setting up Verlet run ... 189s Unit style : lj 189s Current step : 0 189s Time step : 0.003 189s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 189s Step Temp E_pair E_mol TotEng Press Volume 189s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 189s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 189s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 189s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 189s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 189s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 189s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 189s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 189s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 189s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 189s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 189s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 189s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 189s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 189s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 189s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 189s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 189s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 189s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 189s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 189s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 189s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 189s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 190s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 190s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 190s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 190s Loop time of 5.7023 on 1 procs for 5000 steps with 8141 atoms 190s 190s Performance: 227276.684 tau/day, 876.839 timesteps/s, 7.138 Matom-step/s 190s 92.9% CPU use with 1 MPI tasks x 1 OpenMP threads 190s 190s MPI task timing breakdown: 190s Section | min time | avg time | max time |%varavg| %total 190s --------------------------------------------------------------- 190s Pair | 4.7136 | 4.7136 | 4.7136 | 0.0 | 82.66 190s Neigh | 0.26579 | 0.26579 | 0.26579 | 0.0 | 4.66 190s Comm | 0.0040074 | 0.0040074 | 0.0040074 | 0.0 | 0.07 190s Output | 0.0018292 | 0.0018292 | 0.0018292 | 0.0 | 0.03 190s Modify | 0.58017 | 0.58017 | 0.58017 | 0.0 | 10.17 190s Other | | 0.1369 | | | 2.40 190s 190s Nlocal: 8141 ave 8141 max 8141 min 190s Histogram: 1 0 0 0 0 0 0 0 0 0 190s Nghost: 0 ave 0 max 0 min 190s Histogram: 1 0 0 0 0 0 0 0 0 0 190s Neighs: 71389 ave 71389 max 71389 min 190s Histogram: 1 0 0 0 0 0 0 0 0 0 190s 190s Total # of neighbors = 71389 190s Ave neighs/atom = 8.7690701 190s Neighbor list builds = 100 190s Dangerous builds = 0 190s Total wall time: 0:00:05 190s run: OK 190s autopkgtest [01:04:59]: test crack: -----------------------] 190s autopkgtest [01:04:59]: test crack: - - - - - - - - - - results - - - - - - - - - - 190s crack PASS 191s autopkgtest [01:05:00]: test dipole: preparing testbed 191s Reading package lists... 191s Building dependency tree... 191s Reading state information... 191s Solving dependencies... 191s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 192s autopkgtest [01:05:01]: test dipole: [----------------------- 192s LAMMPS (4 Feb 2025) 192s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 192s using 1 OpenMP thread(s) per MPI task 192s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 192s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 192s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 192s 2 by 1 by 1 MPI processor grid 192s Created 200 atoms 192s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 192s create_atoms CPU = 0.000 seconds 192s Setting atom values ... 192s 200 settings made for mass 192s Setting atom values ... 192s 200 settings made for dipole/random 192s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 192s Neighbor list info ... 192s update: every = 1 steps, delay = 0 steps, check = yes 192s max neighbors/atom: 2000, page size: 100000 192s master list distance cutoff = 2.8 192s ghost atom cutoff = 2.8 192s binsize = 1.4, bins = 13 13 2 192s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 192s (1) pair lj/cut/dipole/cut, perpetual 192s attributes: half, newton on 192s pair build: half/bin/atomonly/newton 192s stencil: half/bin/2d 192s bin: standard 192s Setting up Verlet run ... 192s Unit style : lj 192s Current step : 0 192s Time step : 0.005 192s Per MPI rank memory allocation (min/avg/max) = 5.049 | 5.049 | 5.049 Mbytes 192s Step Temp E_pair c_erot TotEng Press 192s 0 0 -2.1717485 0 -2.1717485 -2.5549017 192s 500 0.39555366 -2.8050759 0.22195366 -2.4115 -0.21605406 192s 1000 0.4062916 -2.8050542 0.22105842 -2.400794 -0.37250231 192s 1500 0.44946161 -2.8276171 0.20908634 -2.3804028 -0.19355614 192s 2000 0.41682156 -2.8150619 0.2305314 -2.4003245 -0.12755885 192s 2500 0.4223725 -2.7993826 0.21202048 -2.3791219 -0.42760254 192s 3000 0.40674172 -2.7701159 0.20435228 -2.3654079 0.12191183 192s 3500 0.41566211 -2.7940342 0.2127683 -2.3804504 -0.047420259 192s 4000 0.39899304 -2.7922419 0.23261768 -2.3952438 -0.5584713 192s 4500 0.41521411 -2.7902637 0.21553109 -2.3771257 -0.39868711 192s 5000 0.43435521 -2.7839342 0.20079255 -2.3517508 -0.23557371 192s 5500 0.43573361 -2.832029 0.24954704 -2.3984741 -0.30757008 192s 6000 0.43444077 -2.7971759 0.22707649 -2.3649073 -0.050026659 192s 6500 0.45018406 -2.802489 0.21507806 -2.3545558 -0.24632195 193s 7000 0.50302088 -2.8284285 0.19272668 -2.3279228 0.21477101 193s 7500 0.40216423 -2.7684646 0.24505695 -2.3683112 -0.038037764 193s 8000 0.41559297 -2.759803 0.23021572 -2.346288 -0.2498825 193s 8500 0.44167949 -2.7440933 0.20455344 -2.3046222 0.035670346 193s 9000 0.4218566 -2.7577529 0.23796636 -2.3380055 -0.4366142 193s 9500 0.46009563 -2.7683135 0.2289365 -2.3105184 -0.11500533 193s 10000 0.41474987 -2.747283 0.25293544 -2.3346069 -0.20525996 193s Loop time of 0.449359 on 2 procs for 10000 steps with 200 atoms 193s 193s Performance: 9613702.998 tau/day, 22253.942 timesteps/s, 4.451 Matom-step/s 193s 99.2% CPU use with 2 MPI tasks x 1 OpenMP threads 193s 193s MPI task timing breakdown: 193s Section | min time | avg time | max time |%varavg| %total 193s --------------------------------------------------------------- 193s Pair | 0.30185 | 0.30494 | 0.30803 | 0.6 | 67.86 193s Neigh | 0.016718 | 0.01719 | 0.017661 | 0.4 | 3.83 193s Comm | 0.07618 | 0.081084 | 0.085988 | 1.7 | 18.04 193s Output | 0.0002203 | 0.00053824 | 0.00085618 | 0.0 | 0.12 193s Modify | 0.025978 | 0.030538 | 0.035098 | 2.6 | 6.80 193s Other | | 0.01507 | | | 3.35 193s 193s Nlocal: 100 ave 100 max 100 min 193s Histogram: 2 0 0 0 0 0 0 0 0 0 193s Nghost: 122.5 ave 125 max 120 min 193s Histogram: 1 0 0 0 0 0 0 0 0 1 193s Neighs: 801 ave 817 max 785 min 193s Histogram: 1 0 0 0 0 0 0 0 0 1 193s 193s Total # of neighbors = 1602 193s Ave neighs/atom = 8.01 193s Neighbor list builds = 681 193s Dangerous builds = 0 193s Total wall time: 0:00:00 193s LAMMPS (4 Feb 2025) 193s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 193s using 1 OpenMP thread(s) per MPI task 193s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 193s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 193s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 193s 1 by 1 by 1 MPI processor grid 193s Created 200 atoms 193s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 193s create_atoms CPU = 0.000 seconds 193s Setting atom values ... 193s 200 settings made for mass 193s Setting atom values ... 193s 200 settings made for dipole/random 193s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 193s Neighbor list info ... 193s update: every = 1 steps, delay = 0 steps, check = yes 193s max neighbors/atom: 2000, page size: 100000 193s master list distance cutoff = 2.8 193s ghost atom cutoff = 2.8 193s binsize = 1.4, bins = 13 13 2 193s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 193s (1) pair lj/cut/dipole/cut, perpetual 193s attributes: half, newton on 193s pair build: half/bin/atomonly/newton 193s stencil: half/bin/2d 193s bin: standard 193s Setting up Verlet run ... 193s Unit style : lj 193s Current step : 0 193s Time step : 0.005 193s Per MPI rank memory allocation (min/avg/max) = 5.05 | 5.05 | 5.05 Mbytes 193s Step Temp E_pair c_erot TotEng Press 193s 0 0 -2.1717485 0 -2.1717485 -2.5549017 193s 500 0.39555366 -2.8050759 0.22195366 -2.4115 -0.21605406 193s 1000 0.4062916 -2.8050542 0.22105842 -2.400794 -0.37250231 193s 1500 0.44946161 -2.8276171 0.20908634 -2.3804028 -0.19355613 193s 2000 0.4168217 -2.8150621 0.2305314 -2.4003245 -0.12755874 193s 2500 0.42235256 -2.79937 0.21201967 -2.3791292 -0.42752528 193s 3000 0.40118286 -2.7566267 0.19795371 -2.3574498 0.17122949 193s 3500 0.41913359 -2.789969 0.21614734 -2.3729311 -0.22517024 193s 4000 0.4121296 -2.7638868 0.20353041 -2.3538179 -0.07160792 193s 4500 0.45366888 -2.8425735 0.24841497 -2.391173 0.11913846 193s 5000 0.4311204 -2.8002159 0.22949783 -2.3712511 0.23492578 193s 5500 0.44426372 -2.7935996 0.21466537 -2.3515572 0.16360579 193s 6000 0.43178553 -2.7534884 0.19794383 -2.3238618 -0.16038048 193s 6500 0.4124462 -2.7482024 0.21992912 -2.3378185 -0.18038226 193s 7000 0.41507218 -2.7528753 0.21771614 -2.3398785 -0.062657125 193s 7500 0.45230794 -2.7783727 0.21423215 -2.3283263 -0.044538456 193s 8000 0.42726335 -2.7931306 0.26364827 -2.3680036 -0.24929222 193s 8500 0.41614819 -2.7456553 0.23149494 -2.3315878 0.059511435 193s 9000 0.46797377 -2.791191 0.21950369 -2.3255571 -0.094337938 193s 9500 0.44990418 -2.7984325 0.24896606 -2.3507778 -0.34897551 193s 10000 0.45951563 -2.7688659 0.21262443 -2.3116478 -0.29263014 193s Loop time of 0.72586 on 1 procs for 10000 steps with 200 atoms 193s 193s Performance: 5951563.424 tau/day, 13776.767 timesteps/s, 2.755 Matom-step/s 193s 98.8% CPU use with 1 MPI tasks x 1 OpenMP threads 193s 193s MPI task timing breakdown: 193s Section | min time | avg time | max time |%varavg| %total 193s --------------------------------------------------------------- 193s Pair | 0.60333 | 0.60333 | 0.60333 | 0.0 | 83.12 193s Neigh | 0.032976 | 0.032976 | 0.032976 | 0.0 | 4.54 193s Comm | 0.025943 | 0.025943 | 0.025943 | 0.0 | 3.57 193s Output | 0.00025088 | 0.00025088 | 0.00025088 | 0.0 | 0.03 193s Modify | 0.054761 | 0.054761 | 0.054761 | 0.0 | 7.54 193s Other | | 0.008597 | | | 1.18 193s 193s Nlocal: 200 ave 200 max 200 min 193s Histogram: 1 0 0 0 0 0 0 0 0 0 193s Nghost: 146 ave 146 max 146 min 193s Histogram: 1 0 0 0 0 0 0 0 0 0 193s Neighs: 1608 ave 1608 max 1608 min 193s Histogram: 1 0 0 0 0 0 0 0 0 0 193s 193s Total # of neighbors = 1608 193s Ave neighs/atom = 8.04 193s Neighbor list builds = 685 193s Dangerous builds = 0 193s Total wall time: 0:00:00 193s run: OK 194s autopkgtest [01:05:03]: test dipole: -----------------------] 194s dipole PASS 194s autopkgtest [01:05:03]: test dipole: - - - - - - - - - - results - - - - - - - - - - 195s autopkgtest [01:05:04]: test ellipse: preparing testbed 195s Reading package lists... 195s Building dependency tree... 195s Reading state information... 195s Solving dependencies... 195s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 196s autopkgtest [01:05:05]: test ellipse: [----------------------- 196s LAMMPS (4 Feb 2025) 196s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 196s using 1 OpenMP thread(s) per MPI task 196s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 196s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 196s 2 by 1 by 1 MPI processor grid 196s Created 400 atoms 196s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 196s create_atoms CPU = 0.000 seconds 196s Setting atom values ... 196s 48 settings made for type/fraction 196s Setting atom values ... 196s 352 settings made for mass 196s Setting atom values ... 196s 48 settings made for mass 196s Setting atom values ... 196s 352 settings made for shape 196s Setting atom values ... 196s 48 settings made for shape 196s Setting atom values ... 196s 400 settings made for quat/random 196s 352 atoms in group spheroid 196s 196s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 196s 196s Your simulation uses code contributions which should be cited: 196s - pair gayberne command: doi:10.1063/1.3058435 196s The log file lists these citations in BibTeX format. 196s 196s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 196s 196s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 196s Neighbor list info ... 196s update: every = 1 steps, delay = 0 steps, check = yes 196s max neighbors/atom: 2000, page size: 100000 196s master list distance cutoff = 4.8 196s ghost atom cutoff = 4.8 196s binsize = 2.4, bins = 59 59 3 196s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 196s (1) pair gayberne, perpetual 196s attributes: half, newton on 196s pair build: half/bin/atomonly/newton 196s stencil: half/bin/2d 196s bin: standard 196s Setting up Verlet run ... 196s Unit style : lj 196s Current step : 0 196s Time step : 0.002 196s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 196s Step c_rot E_pair TotEng Press Volume 196s 0 2.2638298 0 2.394 0.04788 20000 196s 100 1.7507088 0 1.8513745 0.036020794 20558.953 196s 200 2.2704785 0 2.401031 0.046552815 20630.598 196s 300 1.862122 0 1.969194 0.042610426 18485.56 196s 400 2.1682285 -0.00033180079 2.2925698 0.06678177 13725.929 196s 500 1.9774167 -0.036688682 2.0543497 0.094267647 8509.1191 196s 600 2.0763332 -0.16712599 1.8943547 0.22454815 4686.7174 196s 700 2.2031637 -0.65167903 1.505138 0.69461503 2513.4867 196s 800 1.9076177 -1.6161536 0.26664447 1.2006561 1456.0639 196s 900 2.1654872 -3.098663 -1.0127947 2.3547814 962.22026 196s 1000 1.5697203 -4.290219 -2.7475676 2.2081575 780.13242 196s 1100 1.8639391 -4.8401808 -2.9839514 1.6435411 731.64362 196s 1200 2.148214 -4.559462 -2.3813692 1.2926066 761.90913 197s 1300 1.756056 -4.1199781 -2.4086474 0.55480157 830.59257 197s 1400 2.2520217 -3.9967432 -1.7251673 1.0840012 891.1767 197s 1500 1.7403402 -3.6959497 -1.9315447 0.69094077 980.77988 197s 1600 2.2198668 -3.40679 -1.2069637 0.83252434 1063.6253 197s 1700 1.8937862 -3.2995933 -1.4123785 0.15689916 1142.2427 197s 1800 2.0788606 -3.2740111 -1.2135595 0.8266016 1170.2029 197s 1900 2.0093512 -3.3688564 -1.3754478 0.50483334 1173.9086 197s 2000 1.9784272 -3.3396694 -1.3888911 0.80497674 1149.0282 197s Loop time of 0.487073 on 2 procs for 2000 steps with 400 atoms 197s 197s Performance: 709544.551 tau/day, 4106.161 timesteps/s, 1.642 Matom-step/s 197s 99.3% CPU use with 2 MPI tasks x 1 OpenMP threads 197s 197s MPI task timing breakdown: 197s Section | min time | avg time | max time |%varavg| %total 197s --------------------------------------------------------------- 197s Pair | 0.31116 | 0.32658 | 0.342 | 2.7 | 67.05 197s Neigh | 0.010874 | 0.011066 | 0.011258 | 0.2 | 2.27 197s Comm | 0.027599 | 0.042823 | 0.058048 | 7.4 | 8.79 197s Output | 0.011622 | 0.011701 | 0.01178 | 0.1 | 2.40 197s Modify | 0.088037 | 0.089683 | 0.091329 | 0.5 | 18.41 197s Other | | 0.005216 | | | 1.07 197s 197s Nlocal: 200 ave 227 max 173 min 197s Histogram: 1 0 0 0 0 0 0 0 0 1 197s Nghost: 204 ave 206 max 202 min 197s Histogram: 1 0 0 0 0 0 0 0 0 1 197s Neighs: 1479.5 ave 1784 max 1175 min 197s Histogram: 1 0 0 0 0 0 0 0 0 1 197s 197s Total # of neighbors = 2959 197s Ave neighs/atom = 7.3975 197s Neighbor list builds = 348 197s Dangerous builds = 0 197s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 197s Setting up Verlet run ... 197s Unit style : lj 197s Current step : 2000 197s Time step : 0.002 197s Per MPI rank memory allocation (min/avg/max) = 6.9 | 6.9 | 6.9 Mbytes 197s Step c_rot E_pair TotEng Press Volume 197s 2000 1.9784272 -3.3396694 -1.3888911 0.80497674 1149.0282 197s 2100 1.9413656 -3.2989879 -1.344805 1.1581912 1149.0282 197s 2200 1.9590367 -3.3182662 -1.3678333 0.35910433 1149.0282 197s 2300 2.0250309 -3.3891121 -1.3644964 0.46285769 1149.0282 197s 2400 2.085533 -3.4551199 -1.3401904 0.61189864 1149.0282 197s 2500 2.077574 -3.4482359 -1.3340251 1.0190852 1149.0282 197s 2600 2.0840722 -3.4558292 -1.3514352 0.7597702 1149.0282 197s 2700 2.1174248 -3.4915978 -1.3720622 0.82088405 1149.0282 197s 2800 2.0120484 -3.3803498 -1.3351386 1.0472272 1149.0282 197s 2900 2.095772 -3.4692917 -1.3762115 0.6503267 1149.0282 197s 3000 2.005185 -3.3743963 -1.3771538 0.74858505 1149.0282 197s 3100 2.0635196 -3.4375558 -1.3792354 0.72379626 1149.0282 197s 3200 2.0131468 -3.3825952 -1.3703433 1.1087307 1149.0282 197s 3300 2.0467878 -3.4185419 -1.3532024 0.7400243 1149.0282 197s 3400 1.9629403 -3.328306 -1.3871127 0.78865882 1149.0282 197s 3500 2.0576813 -3.4288036 -1.3361687 0.72305492 1149.0282 197s 3600 1.9638286 -3.3256476 -1.3663274 0.83792378 1149.0282 197s 3700 1.9900562 -3.3535764 -1.3259922 0.4389563 1149.0282 197s 3800 1.9016735 -3.2598525 -1.3493967 0.56256005 1149.0282 197s 3900 2.002131 -3.3658151 -1.3768647 0.59924524 1149.0282 197s 4000 1.9750784 -3.33731 -1.3724406 0.70702486 1149.0282 197s Loop time of 0.639621 on 2 procs for 2000 steps with 400 atoms 197s 197s Performance: 540320.071 tau/day, 3126.852 timesteps/s, 1.251 Matom-step/s 197s 98.3% CPU use with 2 MPI tasks x 1 OpenMP threads 197s 197s MPI task timing breakdown: 197s Section | min time | avg time | max time |%varavg| %total 197s --------------------------------------------------------------- 197s Pair | 0.31598 | 0.41935 | 0.52272 | 16.0 | 65.56 197s Neigh | 0.0021819 | 0.0030128 | 0.0038438 | 1.5 | 0.47 197s Comm | 0.020659 | 0.12487 | 0.22907 | 29.5 | 19.52 197s Output | 0.014754 | 0.014813 | 0.014872 | 0.0 | 2.32 197s Modify | 0.04814 | 0.060839 | 0.073538 | 5.1 | 9.51 197s Other | | 0.01674 | | | 2.62 197s 197s Nlocal: 200 ave 242 max 158 min 197s Histogram: 1 0 0 0 0 0 0 0 0 1 197s Nghost: 186 ave 206 max 166 min 197s Histogram: 1 0 0 0 0 0 0 0 0 1 197s Neighs: 1548.5 ave 2045 max 1052 min 197s Histogram: 1 0 0 0 0 0 0 0 0 1 197s 197s Total # of neighbors = 3097 197s Ave neighs/atom = 7.7425 197s Neighbor list builds = 48 197s Dangerous builds = 0 197s Total wall time: 0:00:01 197s LAMMPS (4 Feb 2025) 198s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 198s using 1 OpenMP thread(s) per MPI task 198s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 198s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 198s 1 by 1 by 1 MPI processor grid 198s Created 400 atoms 198s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 198s create_atoms CPU = 0.000 seconds 198s Setting atom values ... 198s 48 settings made for type/fraction 198s Setting atom values ... 198s 352 settings made for mass 198s Setting atom values ... 198s 48 settings made for mass 198s Setting atom values ... 198s 352 settings made for shape 198s Setting atom values ... 198s 48 settings made for shape 198s Setting atom values ... 198s 400 settings made for quat/random 198s 352 atoms in group spheroid 198s 198s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 198s 198s Your simulation uses code contributions which should be cited: 198s - pair gayberne command: doi:10.1063/1.3058435 198s The log file lists these citations in BibTeX format. 198s 198s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 198s 198s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 198s Neighbor list info ... 198s update: every = 1 steps, delay = 0 steps, check = yes 198s max neighbors/atom: 2000, page size: 100000 198s master list distance cutoff = 4.8 198s ghost atom cutoff = 4.8 198s binsize = 2.4, bins = 59 59 3 198s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 198s (1) pair gayberne, perpetual 198s attributes: half, newton on 198s pair build: half/bin/atomonly/newton 198s stencil: half/bin/2d 198s bin: standard 198s Setting up Verlet run ... 198s Unit style : lj 198s Current step : 0 198s Time step : 0.002 198s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 198s Step c_rot E_pair TotEng Press Volume 198s 0 2.2638298 0 2.394 0.04788 20000 198s 100 1.7507088 0 1.8513745 0.036020794 20558.953 198s 200 2.2704785 0 2.401031 0.046552815 20630.598 198s 300 1.862122 0 1.969194 0.042610426 18485.56 198s 400 2.1682285 -0.00033180079 2.2925698 0.06678177 13725.929 198s 500 1.9774167 -0.036688682 2.0543497 0.094267647 8509.1191 198s 600 2.0763332 -0.16712599 1.8943547 0.22454815 4686.7174 198s 700 2.2031637 -0.65167903 1.505138 0.69461503 2513.4867 198s 800 1.9076177 -1.6161536 0.26664447 1.2006561 1456.0639 198s 900 2.1654872 -3.098663 -1.0127947 2.3547814 962.22026 198s 1000 1.5697203 -4.290219 -2.7475676 2.2081575 780.13242 198s 1100 1.8639391 -4.8401808 -2.9839514 1.6435411 731.64362 198s 1200 2.148214 -4.559462 -2.3813692 1.2926066 761.90913 198s 1300 1.756056 -4.1199781 -2.4086474 0.55480157 830.59257 198s 1400 2.2520217 -3.9967432 -1.7251673 1.0840012 891.1767 198s 1500 1.7403402 -3.6959497 -1.9315447 0.69094077 980.77988 198s 1600 2.2198668 -3.40679 -1.2069637 0.83252434 1063.6253 198s 1700 1.8937862 -3.2995933 -1.4123785 0.15689916 1142.2427 198s 1800 2.0788606 -3.2740111 -1.2135595 0.8266016 1170.2029 198s 1900 2.0093512 -3.3688564 -1.3754478 0.50483334 1173.9086 198s 2000 1.9784272 -3.3396694 -1.3888912 0.8049767 1149.0282 198s Loop time of 0.939902 on 1 procs for 2000 steps with 400 atoms 198s 198s Performance: 367698.071 tau/day, 2127.882 timesteps/s, 851.153 katom-step/s 198s 93.6% CPU use with 1 MPI tasks x 1 OpenMP threads 198s 198s MPI task timing breakdown: 198s Section | min time | avg time | max time |%varavg| %total 198s --------------------------------------------------------------- 198s Pair | 0.70448 | 0.70448 | 0.70448 | 0.0 | 74.95 199s Neigh | 0.02281 | 0.02281 | 0.02281 | 0.0 | 2.43 199s Comm | 0.010504 | 0.010504 | 0.010504 | 0.0 | 1.12 199s Output | 0.019781 | 0.019781 | 0.019781 | 0.0 | 2.10 199s Modify | 0.17776 | 0.17776 | 0.17776 | 0.0 | 18.91 199s Other | | 0.00457 | | | 0.49 199s 199s Nlocal: 400 ave 400 max 400 min 199s Histogram: 1 0 0 0 0 0 0 0 0 0 199s Nghost: 255 ave 255 max 255 min 199s Histogram: 1 0 0 0 0 0 0 0 0 0 199s Neighs: 2959 ave 2959 max 2959 min 199s Histogram: 1 0 0 0 0 0 0 0 0 0 199s 199s Total # of neighbors = 2959 199s Ave neighs/atom = 7.3975 199s Neighbor list builds = 348 199s Dangerous builds = 0 199s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 199s Setting up Verlet run ... 199s Unit style : lj 199s Current step : 2000 199s Time step : 0.002 199s Per MPI rank memory allocation (min/avg/max) = 6.926 | 6.926 | 6.926 Mbytes 199s Step c_rot E_pair TotEng Press Volume 199s 2000 1.9784272 -3.3396694 -1.3888912 0.8049767 1149.0282 199s 2100 1.9413656 -3.2989879 -1.344805 1.1581912 1149.0282 199s 2200 1.9590368 -3.3182663 -1.3678333 0.35910425 1149.0282 199s 2300 2.0250308 -3.3891119 -1.3644964 0.46285779 1149.0282 199s 2400 2.0855331 -3.45512 -1.3401904 0.61189841 1149.0282 199s 2500 2.0775737 -3.4482356 -1.3340258 1.0190836 1149.0282 199s 2600 2.084072 -3.4558289 -1.3514359 0.75976918 1149.0282 199s 2700 2.1174308 -3.4916046 -1.3720664 0.82086811 1149.0282 199s 2800 2.0120441 -3.3803491 -1.3351469 1.047208 1149.0282 199s 2900 2.0957766 -3.4692999 -1.376208 0.65043335 1149.0282 199s 3000 2.00512 -3.3743288 -1.3771585 0.7487656 1149.0282 199s 3100 2.0635277 -3.4376031 -1.3792202 0.72375619 1149.0282 199s 3200 2.0130716 -3.3825107 -1.3702334 1.1098674 1149.0282 199s 3300 2.0463568 -3.4179583 -1.3534773 0.73871011 1149.0282 199s 3400 1.9649348 -3.3304023 -1.3860539 0.77548498 1149.0282 199s 3500 2.0501941 -3.4213612 -1.3373407 0.73278199 1149.0282 199s 3600 1.9881829 -3.3519947 -1.3795107 0.73402726 1149.0282 199s 3700 1.9994085 -3.3655341 -1.3599281 0.3911747 1149.0282 199s 3800 1.963869 -3.3264036 -1.3599099 0.50519594 1149.0282 199s 3900 1.9970107 -3.3624111 -1.3743885 1.0960718 1149.0282 199s 4000 2.0620245 -3.4315752 -1.3998675 0.54966642 1149.0282 199s Loop time of 1.02664 on 1 procs for 2000 steps with 400 atoms 199s 199s Performance: 336632.739 tau/day, 1948.106 timesteps/s, 779.242 katom-step/s 199s 96.3% CPU use with 1 MPI tasks x 1 OpenMP threads 199s 199s MPI task timing breakdown: 199s Section | min time | avg time | max time |%varavg| %total 199s --------------------------------------------------------------- 199s Pair | 0.86047 | 0.86047 | 0.86047 | 0.0 | 83.81 199s Neigh | 0.0060305 | 0.0060305 | 0.0060305 | 0.0 | 0.59 199s Comm | 0.0091902 | 0.0091902 | 0.0091902 | 0.0 | 0.90 199s Output | 0.022147 | 0.022147 | 0.022147 | 0.0 | 2.16 199s Modify | 0.12446 | 0.12446 | 0.12446 | 0.0 | 12.12 199s Other | | 0.004337 | | | 0.42 199s 199s Nlocal: 400 ave 400 max 400 min 199s Histogram: 1 0 0 0 0 0 0 0 0 0 199s Nghost: 240 ave 240 max 240 min 199s Histogram: 1 0 0 0 0 0 0 0 0 0 199s Neighs: 3096 ave 3096 max 3096 min 199s Histogram: 1 0 0 0 0 0 0 0 0 0 199s 199s Total # of neighbors = 3096 199s Ave neighs/atom = 7.74 199s Neighbor list builds = 49 199s Dangerous builds = 0 199s Total wall time: 0:00:01 199s LAMMPS (4 Feb 2025) 199s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 199s using 1 OpenMP thread(s) per MPI task 199s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 199s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 199s 2 by 1 by 1 MPI processor grid 199s Created 400 atoms 199s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 199s create_atoms CPU = 0.000 seconds 199s Setting atom values ... 199s 48 settings made for type/fraction 199s Setting atom values ... 199s 352 settings made for mass 199s Setting atom values ... 199s 48 settings made for mass 199s Setting atom values ... 199s 352 settings made for shape 199s Setting atom values ... 199s 48 settings made for shape 199s Setting atom values ... 199s 400 settings made for quat/random 199s 352 atoms in group spheroid 199s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 199s Neighbor list info ... 199s update: every = 1 steps, delay = 0 steps, check = yes 199s max neighbors/atom: 2000, page size: 100000 199s master list distance cutoff = 4.8 199s ghost atom cutoff = 4.8 199s binsize = 2.4, bins = 59 59 3 199s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 199s (1) pair resquared, perpetual 199s attributes: half, newton on 199s pair build: half/bin/atomonly/newton 199s stencil: half/bin/2d 199s bin: standard 199s Setting up Verlet run ... 199s Unit style : lj 199s Current step : 0 199s Time step : 0.002 199s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 199s Step c_rot E_pair TotEng Press Volume 199s 0 2.2638298 0 2.394 0.04788 20000 199s 100 1.7507088 0 1.8513745 0.036020794 20558.953 199s 200 2.2704785 0 2.401031 0.046552815 20630.598 200s 300 1.862122 0 1.969194 0.042610426 18485.56 200s 400 2.1681648 -1.8025253e-05 2.2928162 0.066815262 13725.945 200s 500 1.9796533 0.011266483 2.1047446 0.10930999 8512.0962 200s 600 2.0381815 0.05520958 2.0768422 0.26593572 4768.9024 200s 700 2.2849402 0.25892126 2.4973312 1.1619 2735.0739 200s 800 1.4992869 0.22469187 1.6806361 1.2886286 1869.4273 200s 900 2.0547415 0.27250933 2.2614984 1.9975339 1555.2406 200s 1000 1.6926518 0.1458468 1.8205892 1.178465 1587.0462 200s 1100 2.2566757 0.10550322 2.3422895 0.95295253 1829.1762 200s 1200 1.7863944 0.052794099 1.8022676 0.50915281 2274.7198 200s 1300 2.1812168 0.052256594 2.1840651 0.45260879 2829.8629 200s 1400 1.9144744 0.03819752 1.9088776 0.32361118 3307.992 200s 1500 2.0960168 0.05105678 2.1054249 0.35884692 3466.0213 200s 1600 2.0672237 0.058048371 2.1030277 0.39835548 3217.6206 200s 1700 1.9868599 0.15133448 2.1051513 0.73337678 2689.3862 200s 1800 2.1036353 0.19793253 2.2839145 1.1035796 2171.6175 200s 1900 1.8399343 0.15530012 2.0123427 1.0727888 1823.0596 200s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 200s Loop time of 0.756556 on 2 procs for 2000 steps with 400 atoms 200s 200s Performance: 456806.623 tau/day, 2643.557 timesteps/s, 1.057 Matom-step/s 200s 98.2% CPU use with 2 MPI tasks x 1 OpenMP threads 200s 200s MPI task timing breakdown: 200s Section | min time | avg time | max time |%varavg| %total 200s --------------------------------------------------------------- 200s Pair | 0.59027 | 0.59291 | 0.59555 | 0.3 | 78.37 200s Neigh | 0.011146 | 0.01126 | 0.011374 | 0.1 | 1.49 200s Comm | 0.04129 | 0.043774 | 0.046257 | 1.2 | 5.79 200s Output | 0.011834 | 0.0119 | 0.011965 | 0.1 | 1.57 200s Modify | 0.09113 | 0.091643 | 0.092156 | 0.2 | 12.11 200s Other | | 0.005069 | | | 0.67 200s 200s Nlocal: 200 ave 206 max 194 min 200s Histogram: 1 0 0 0 0 0 0 0 0 1 200s Nghost: 166 ave 172 max 160 min 200s Histogram: 1 0 0 0 0 0 0 0 0 1 200s Neighs: 990.5 ave 1028 max 953 min 200s Histogram: 1 0 0 0 0 0 0 0 0 1 200s 200s Total # of neighbors = 1981 200s Ave neighs/atom = 4.9525 200s Neighbor list builds = 410 200s Dangerous builds = 0 200s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 200s Setting up Verlet run ... 200s Unit style : lj 200s Current step : 2000 200s Time step : 0.002 200s Per MPI rank memory allocation (min/avg/max) = 6.89 | 6.89 | 6.89 Mbytes 200s Step c_rot E_pair TotEng Press Volume 200s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 200s 2100 2.2262008 0.15960391 2.3610768 1.3398437 1625.5704 200s 2200 2.1759925 0.21281154 2.4217703 1.547288 1625.5704 200s 2300 2.2426044 0.14235411 2.3796419 1.3063731 1625.5704 201s 2400 2.1909516 0.1968467 2.3277677 1.5131631 1625.5704 201s 2500 2.1396456 0.25118294 2.3450649 1.7231479 1625.5704 201s 2600 2.1724989 0.21652796 2.36624 1.5785682 1625.5704 201s 2700 2.1347133 0.2565462 2.3819962 1.7939756 1625.5704 201s 2800 2.2187273 0.16767707 2.3890091 1.3803388 1625.5704 201s 2900 2.2653117 0.11841424 2.358481 1.1423479 1625.5704 201s 3000 2.1965681 0.19125616 2.3687823 1.55014 1625.5704 201s 3100 2.1970501 0.19052613 2.3694703 1.4706426 1625.5704 201s 3200 2.1661439 0.22324214 2.3939177 1.619691 1625.5704 201s 3300 2.1298288 0.26157991 2.3997036 1.8700501 1625.5704 201s 3400 2.1293647 0.26220526 2.373699 1.7332686 1625.5704 201s 3500 2.1835494 0.20483304 2.4031724 1.5471088 1625.5704 201s 3600 2.1875445 0.20049079 2.4159533 1.5995253 1625.5704 202s 3700 2.1186666 0.27351639 2.4141913 1.9057949 1625.5704 202s 3800 2.1752149 0.2136072 2.3067948 1.5705518 1625.5704 202s 3900 2.1976482 0.18993383 2.4017837 1.4844827 1625.5704 202s 4000 2.1788977 0.20960933 2.3437572 1.576965 1625.5704 202s Loop time of 1.55133 on 2 procs for 2000 steps with 400 atoms 202s 202s Performance: 222776.530 tau/day, 1289.216 timesteps/s, 515.686 katom-step/s 202s 91.9% CPU use with 2 MPI tasks x 1 OpenMP threads 202s 202s MPI task timing breakdown: 202s Section | min time | avg time | max time |%varavg| %total 202s --------------------------------------------------------------- 202s Pair | 1.2758 | 1.276 | 1.2762 | 0.0 | 82.25 202s Neigh | 0.0023737 | 0.0024579 | 0.002542 | 0.2 | 0.16 202s Comm | 0.16847 | 0.1686 | 0.16872 | 0.0 | 10.87 202s Output | 0.016708 | 0.01684 | 0.016973 | 0.1 | 1.09 202s Modify | 0.071872 | 0.073574 | 0.075275 | 0.6 | 4.74 202s Other | | 0.01385 | | | 0.89 202s 202s Nlocal: 200 ave 207 max 193 min 202s Histogram: 1 0 0 0 0 0 0 0 0 1 202s Nghost: 162.5 ave 165 max 160 min 202s Histogram: 1 0 0 0 0 0 0 0 0 1 202s Neighs: 966 ave 1009 max 923 min 202s Histogram: 1 0 0 0 0 0 0 0 0 1 202s 202s Total # of neighbors = 1932 202s Ave neighs/atom = 4.83 202s Neighbor list builds = 50 202s Dangerous builds = 0 202s Total wall time: 0:00:02 202s LAMMPS (4 Feb 2025) 204s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 204s using 1 OpenMP thread(s) per MPI task 204s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 204s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 204s 1 by 1 by 1 MPI processor grid 204s Created 400 atoms 204s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 204s create_atoms CPU = 0.001 seconds 204s Setting atom values ... 204s 48 settings made for type/fraction 204s Setting atom values ... 204s 352 settings made for mass 204s Setting atom values ... 204s 48 settings made for mass 204s Setting atom values ... 204s 352 settings made for shape 204s Setting atom values ... 204s 48 settings made for shape 204s Setting atom values ... 204s 400 settings made for quat/random 204s 352 atoms in group spheroid 204s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 204s Neighbor list info ... 204s update: every = 1 steps, delay = 0 steps, check = yes 204s max neighbors/atom: 2000, page size: 100000 204s master list distance cutoff = 4.8 204s ghost atom cutoff = 4.8 204s binsize = 2.4, bins = 59 59 3 204s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 204s (1) pair resquared, perpetual 204s attributes: half, newton on 204s pair build: half/bin/atomonly/newton 204s stencil: half/bin/2d 204s bin: standard 204s Setting up Verlet run ... 204s Unit style : lj 204s Current step : 0 204s Time step : 0.002 204s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 204s Step c_rot E_pair TotEng Press Volume 204s 0 2.2638298 0 2.394 0.04788 20000 204s 100 1.7507088 0 1.8513745 0.036020794 20558.953 204s 200 2.2704785 0 2.401031 0.046552815 20630.598 204s 300 1.862122 0 1.969194 0.042610426 18485.56 204s 400 2.1681648 -1.8025253e-05 2.2928162 0.066815262 13725.945 204s 500 1.9796533 0.011266483 2.1047446 0.10930999 8512.0962 204s 600 2.0381815 0.05520958 2.0768422 0.26593572 4768.9024 204s 700 2.2849402 0.25892126 2.4973312 1.1619 2735.0739 204s 800 1.4992869 0.22469187 1.6806361 1.2886286 1869.4273 204s 900 2.0547415 0.27250933 2.2614984 1.9975339 1555.2406 204s 1000 1.6926518 0.1458468 1.8205892 1.178465 1587.0462 204s 1100 2.2566757 0.10550322 2.3422895 0.95295253 1829.1762 204s 1200 1.7863944 0.052794099 1.8022676 0.50915281 2274.7198 204s 1300 2.1812168 0.052256594 2.1840651 0.45260879 2829.8629 204s 1400 1.9144744 0.03819752 1.9088776 0.32361118 3307.992 204s 1500 2.0960168 0.05105678 2.1054249 0.35884692 3466.0213 204s 1600 2.0672237 0.058048371 2.1030277 0.39835548 3217.6206 204s 1700 1.9868599 0.15133448 2.1051513 0.73337678 2689.3862 204s 1800 2.1036353 0.19793253 2.2839145 1.1035796 2171.6175 204s 1900 1.8399343 0.15530012 2.0123427 1.0727888 1823.0596 204s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 204s Loop time of 1.6714 on 1 procs for 2000 steps with 400 atoms 204s 204s Performance: 206772.535 tau/day, 1196.600 timesteps/s, 478.640 katom-step/s 204s 85.9% CPU use with 1 MPI tasks x 1 OpenMP threads 204s 204s MPI task timing breakdown: 204s Section | min time | avg time | max time |%varavg| %total 204s --------------------------------------------------------------- 204s Pair | 1.3795 | 1.3795 | 1.3795 | 0.0 | 82.53 204s Neigh | 0.029424 | 0.029424 | 0.029424 | 0.0 | 1.76 204s Comm | 0.013293 | 0.013293 | 0.013293 | 0.0 | 0.80 204s Output | 0.02308 | 0.02308 | 0.02308 | 0.0 | 1.38 204s Modify | 0.2176 | 0.2176 | 0.2176 | 0.0 | 13.02 207s Other | | 0.00853 | | | 0.51 207s 207s Nlocal: 400 ave 400 max 400 min 207s Histogram: 1 0 0 0 0 0 0 0 0 0 207s Nghost: 214 ave 214 max 214 min 207s Histogram: 1 0 0 0 0 0 0 0 0 0 207s Neighs: 1981 ave 1981 max 1981 min 207s Histogram: 1 0 0 0 0 0 0 0 0 0 207s 207s Total # of neighbors = 1981 207s Ave neighs/atom = 4.9525 207s Neighbor list builds = 410 207s Dangerous builds = 0 207s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 207s Setting up Verlet run ... 207s Unit style : lj 207s Current step : 2000 207s Time step : 0.002 207s Per MPI rank memory allocation (min/avg/max) = 6.917 | 6.917 | 6.917 Mbytes 207s Step c_rot E_pair TotEng Press Volume 207s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 207s 2100 2.2262008 0.15960391 2.3610768 1.3398437 1625.5704 207s 2200 2.1759925 0.21281154 2.4217703 1.547288 1625.5704 207s 2300 2.2426044 0.14235411 2.3796419 1.3063731 1625.5704 207s 2400 2.1909516 0.1968467 2.3277677 1.5131631 1625.5704 207s 2500 2.1396456 0.25118295 2.3450649 1.7231479 1625.5704 207s 2600 2.1724989 0.21652796 2.3662399 1.5785682 1625.5704 207s 2700 2.1347133 0.25654622 2.3819962 1.7939757 1625.5704 207s 2800 2.2187273 0.16767709 2.3890091 1.3803389 1625.5704 207s 2900 2.2653117 0.1184142 2.3584809 1.1423477 1625.5704 207s 3000 2.1965682 0.19125607 2.3687823 1.5501394 1625.5704 207s 3100 2.1970503 0.19052592 2.3694702 1.4706415 1625.5704 207s 3200 2.1661438 0.22324217 2.393918 1.619691 1625.5704 207s 3300 2.1298268 0.26158212 2.3997056 1.8700704 1625.5704 207s 3400 2.129366 0.26220387 2.3736989 1.7332623 1625.5704 207s 3500 2.1835467 0.20483593 2.4031735 1.5471227 1625.5704 207s 3600 2.187532 0.20050401 2.4159602 1.5996363 1625.5704 207s 3700 2.1186808 0.2735013 2.4141937 1.9057216 1625.5704 207s 3800 2.1752481 0.21357202 2.3067618 1.5703983 1625.5704 207s 3900 2.1976728 0.18990792 2.4017814 1.4843601 1625.5704 207s 4000 2.1786303 0.20989248 2.3438733 1.578595 1625.5704 207s Loop time of 3.10133 on 1 procs for 2000 steps with 400 atoms 207s 207s Performance: 111436.216 tau/day, 644.886 timesteps/s, 257.954 katom-step/s 207s 81.9% CPU use with 1 MPI tasks x 1 OpenMP threads 207s 207s MPI task timing breakdown: 207s Section | min time | avg time | max time |%varavg| %total 207s --------------------------------------------------------------- 207s Pair | 2.8934 | 2.8934 | 2.8934 | 0.0 | 93.30 207s Neigh | 0.0055513 | 0.0055513 | 0.0055513 | 0.0 | 0.18 207s Comm | 0.015803 | 0.015803 | 0.015803 | 0.0 | 0.51 207s Output | 0.02511 | 0.02511 | 0.02511 | 0.0 | 0.81 207s Modify | 0.15272 | 0.15272 | 0.15272 | 0.0 | 4.92 207s Other | | 0.008743 | | | 0.28 207s 207s Nlocal: 400 ave 400 max 400 min 207s Histogram: 1 0 0 0 0 0 0 0 0 0 207s Nghost: 208 ave 208 max 208 min 207s Histogram: 1 0 0 0 0 0 0 0 0 0 207s Neighs: 1932 ave 1932 max 1932 min 207s Histogram: 1 0 0 0 0 0 0 0 0 0 207s 207s Total # of neighbors = 1932 207s Ave neighs/atom = 4.83 207s Neighbor list builds = 50 207s Dangerous builds = 0 207s Total wall time: 0:00:04 207s run: OK 207s autopkgtest [01:05:16]: test ellipse: -----------------------] 208s ellipse PASS 208s autopkgtest [01:05:17]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 208s autopkgtest [01:05:17]: test flow: preparing testbed 208s Reading package lists... 208s Building dependency tree... 208s Reading state information... 208s Solving dependencies... 208s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 209s autopkgtest [01:05:18]: test flow: [----------------------- 209s LAMMPS (4 Feb 2025) 209s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 209s using 1 OpenMP thread(s) per MPI task 209s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 209s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 209s 2 by 1 by 1 MPI processor grid 209s Created 420 atoms 209s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 209s create_atoms CPU = 0.000 seconds 209s 60 atoms in group lower 209s 60 atoms in group upper 209s 120 atoms in group boundary 209s 300 atoms in group flow 209s Setting atom values ... 209s 60 settings made for type 209s Setting atom values ... 209s 60 settings made for type 209s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 209s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 209s Neighbor list info ... 209s update: every = 1 steps, delay = 5 steps, check = yes 209s max neighbors/atom: 2000, page size: 100000 209s master list distance cutoff = 1.42246 209s ghost atom cutoff = 1.42246 209s binsize = 0.71123, bins = 37 32 1 209s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 209s (1) pair lj/cut, perpetual 209s attributes: half, newton on 209s pair build: half/bin/atomonly/newton 209s stencil: half/bin/2d 209s bin: standard 209s Setting up Verlet run ... 209s Unit style : lj 209s Current step : 0 209s Time step : 0.003 209s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 209s Step Temp E_pair E_mol TotEng Press Volume 209s 0 1 0 0 0.71190476 0.52314537 571.54286 209s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 209s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 209s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 209s 2000 1 -0.41053025 0 0.30137451 2.8651905 571.54286 209s 2500 1.1226126 -0.37018872 0 0.42900451 2.9459225 571.54286 209s 3000 1 -0.40149829 0 0.31040647 2.7056256 571.54286 209s 3500 1.071429 -0.46774125 0 0.29501417 2.5582838 571.54286 209s 4000 1 -0.39054248 0 0.32136228 2.4314528 571.54286 209s 4500 1.029458 -0.40311018 0 0.32976584 2.5012442 571.54286 209s 5000 1 -0.44252019 0 0.26938457 2.3566317 571.54286 209s 5500 1.0715559 -0.4771158 0 0.28572997 2.420979 571.54286 209s 6000 1 -0.42490153 0 0.28700323 2.4032097 571.54286 209s 6500 1.1729217 -0.43515146 0 0.39985708 2.3670704 571.54286 209s 7000 1 -0.4539943 0 0.25791046 2.36148 571.54286 209s 7500 1.1676524 -0.40784405 0 0.42341328 2.699336 571.54286 209s 8000 1 -0.37626352 0 0.33564124 2.8174026 571.54286 209s 8500 1.1583539 -0.41258281 0 0.41205487 2.6617634 571.54286 209s 9000 1 -0.42918407 0 0.28272069 2.3090418 571.54286 209s 9500 1.0432103 -0.39042315 0 0.3522432 2.6910698 571.54286 209s 10000 1 -0.4676995 0 0.24420526 2.3898708 571.54286 209s Loop time of 0.14224 on 2 procs for 10000 steps with 420 atoms 209s 209s Performance: 18222679.626 tau/day, 70303.548 timesteps/s, 29.527 Matom-step/s 209s 99.7% CPU use with 2 MPI tasks x 1 OpenMP threads 209s 209s MPI task timing breakdown: 209s Section | min time | avg time | max time |%varavg| %total 209s --------------------------------------------------------------- 209s Pair | 0.049714 | 0.050018 | 0.050322 | 0.1 | 35.16 209s Neigh | 0.022473 | 0.022704 | 0.022935 | 0.2 | 15.96 209s Comm | 0.037025 | 0.037562 | 0.038099 | 0.3 | 26.41 209s Output | 0.00014774 | 0.00025594 | 0.00036415 | 0.0 | 0.18 209s Modify | 0.022154 | 0.022336 | 0.022519 | 0.1 | 15.70 209s Other | | 0.009364 | | | 6.58 209s 209s Nlocal: 210 ave 214 max 206 min 209s Histogram: 1 0 0 0 0 0 0 0 0 1 209s Nghost: 51 ave 52 max 50 min 209s Histogram: 1 0 0 0 0 0 0 0 0 1 209s Neighs: 472 ave 494 max 450 min 209s Histogram: 1 0 0 0 0 0 0 0 0 1 209s 209s Total # of neighbors = 944 209s Ave neighs/atom = 2.247619 209s Neighbor list builds = 994 209s Dangerous builds = 0 209s Total wall time: 0:00:00 210s LAMMPS (4 Feb 2025) 210s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 210s using 1 OpenMP thread(s) per MPI task 210s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 210s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 210s 1 by 1 by 1 MPI processor grid 210s Created 420 atoms 210s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 210s create_atoms CPU = 0.000 seconds 210s 60 atoms in group lower 210s 60 atoms in group upper 210s 120 atoms in group boundary 210s 300 atoms in group flow 210s Setting atom values ... 210s 60 settings made for type 210s Setting atom values ... 210s 60 settings made for type 210s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 210s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 210s Neighbor list info ... 210s update: every = 1 steps, delay = 5 steps, check = yes 210s max neighbors/atom: 2000, page size: 100000 210s master list distance cutoff = 1.42246 210s ghost atom cutoff = 1.42246 210s binsize = 0.71123, bins = 37 32 1 210s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 210s (1) pair lj/cut, perpetual 210s attributes: half, newton on 210s pair build: half/bin/atomonly/newton 210s stencil: half/bin/2d 210s bin: standard 210s Setting up Verlet run ... 210s Unit style : lj 210s Current step : 0 210s Time step : 0.003 210s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 210s Step Temp E_pair E_mol TotEng Press Volume 210s 0 1 0 0 0.71190476 0.52314537 571.54286 210s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 210s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 210s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 210s 2000 1 -0.40814262 0 0.30376214 2.9229597 571.54286 210s 2500 1.193035 -0.38493995 0 0.46438736 2.8340607 571.54286 210s 3000 1 -0.45564537 0 0.2562594 2.7506498 571.54286 210s 3500 1.0626882 -0.45013361 0 0.30639918 2.5530157 571.54286 210s 4000 1 -0.39613722 0 0.31576755 2.4669827 571.54286 210s 4500 1.0832856 -0.43003699 0 0.34115919 2.2569491 571.54286 210s 5000 1 -0.42733451 0 0.28457025 2.4685826 571.54286 210s 5500 1.0413391 -0.39346589 0 0.34786835 2.6348761 571.54286 210s 6000 1 -0.42845926 0 0.2834455 2.4988125 571.54286 210s 6500 1.0890296 -0.43775517 0 0.33753016 2.4384217 571.54286 210s 7000 1 -0.46023483 0 0.25166993 2.4429964 571.54286 210s 7500 1.0644341 -0.45175861 0 0.3060171 2.4324515 571.54286 210s 8000 1 -0.43920605 0 0.27269871 2.6469713 571.54286 210s 8500 1.0647184 -0.45399641 0 0.3039817 2.5748114 571.54286 210s 9000 1 -0.46453995 0 0.24736482 2.6591355 571.54286 210s 9500 1.0123 -0.44029216 0 0.28036906 2.413597 571.54286 210s 10000 1 -0.43826448 0 0.27364028 2.3699706 571.54286 210s Loop time of 0.20618 on 1 procs for 10000 steps with 420 atoms 210s 210s Performance: 12571536.627 tau/day, 48501.299 timesteps/s, 20.371 Matom-step/s 210s 95.7% CPU use with 1 MPI tasks x 1 OpenMP threads 210s 210s MPI task timing breakdown: 210s Section | min time | avg time | max time |%varavg| %total 210s --------------------------------------------------------------- 210s Pair | 0.10147 | 0.10147 | 0.10147 | 0.0 | 49.21 210s Neigh | 0.044565 | 0.044565 | 0.044565 | 0.0 | 21.61 210s Comm | 0.0058949 | 0.0058949 | 0.0058949 | 0.0 | 2.86 210s Output | 0.00023247 | 0.00023247 | 0.00023247 | 0.0 | 0.11 210s Modify | 0.042341 | 0.042341 | 0.042341 | 0.0 | 20.54 210s Other | | 0.01168 | | | 5.66 210s 210s Nlocal: 420 ave 420 max 420 min 210s Histogram: 1 0 0 0 0 0 0 0 0 0 210s Nghost: 50 ave 50 max 50 min 210s Histogram: 1 0 0 0 0 0 0 0 0 0 210s Neighs: 946 ave 946 max 946 min 210s Histogram: 1 0 0 0 0 0 0 0 0 0 210s 210s Total # of neighbors = 946 210s Ave neighs/atom = 2.252381 210s Neighbor list builds = 979 210s Dangerous builds = 0 210s Total wall time: 0:00:00 210s LAMMPS (4 Feb 2025) 210s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 210s using 1 OpenMP thread(s) per MPI task 210s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 210s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 210s 2 by 1 by 1 MPI processor grid 210s Created 420 atoms 210s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 210s create_atoms CPU = 0.000 seconds 210s 60 atoms in group lower 210s 60 atoms in group upper 210s 120 atoms in group boundary 210s 300 atoms in group flow 210s Setting atom values ... 210s 60 settings made for type 210s Setting atom values ... 210s 60 settings made for type 210s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 210s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 210s Neighbor list info ... 210s update: every = 1 steps, delay = 5 steps, check = yes 210s max neighbors/atom: 2000, page size: 100000 210s master list distance cutoff = 1.42246 210s ghost atom cutoff = 1.42246 210s binsize = 0.71123, bins = 37 32 1 210s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 210s (1) pair lj/cut, perpetual 210s attributes: half, newton on 210s pair build: half/bin/atomonly/newton 210s stencil: half/bin/2d 210s bin: standard 210s Setting up Verlet run ... 210s Unit style : lj 210s Current step : 0 210s Time step : 0.003 210s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 210s Step Temp E_pair E_mol TotEng Press Volume 210s 0 1 0 0 0.71190476 0.52314537 571.54286 210s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 210s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 210s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 210s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 210s 2500 1.2272957 -0.42381901 0 0.44989865 1.4544608 570.15856 210s 3000 1 -0.4914342 0 0.22047056 1.534595 554.98633 210s 3500 1.2444794 -0.59760758 0 0.2883432 1.8754993 537.01599 210s 4000 1 -0.69890444 0 0.013000318 2.1406234 521.49815 210s 4500 1.2188346 -0.74991278 0 0.1177814 2.7508733 507.73977 210s 5000 1 -0.7445329 0 -0.032628135 3.1054873 501.68859 210s 5500 1.1836415 -0.76775125 0 0.074888789 2.6990153 506.01181 210s 6000 1 -0.7575268 0 -0.04562204 2.4858442 508.26846 210s 6500 1.2076032 -0.68884147 0 0.17085699 2.3143206 512.291 210s 7000 1 -0.66241571 0 0.049489051 2.0686009 516.38744 210s 7500 1.2123711 -0.71994819 0 0.14314459 2.1753937 513.88371 210s 8000 1 -0.71001477 0 0.0018899921 2.0630419 509.80458 210s 8500 1.1991563 -0.78355267 0 0.070132412 2.493712 504.22835 210s 9000 1 -0.72719051 0 -0.015285749 2.27793 505.75742 210s 9500 1.2073739 -0.76518329 0 0.094351911 2.5653732 503.29071 210s 10000 1 -0.78638614 0 -0.074481378 2.3564468 504.38491 210s Loop time of 0.176233 on 2 procs for 10000 steps with 420 atoms 210s 210s Performance: 14707805.693 tau/day, 56743.078 timesteps/s, 23.832 Matom-step/s 210s 96.4% CPU use with 2 MPI tasks x 1 OpenMP threads 210s 210s MPI task timing breakdown: 210s Section | min time | avg time | max time |%varavg| %total 210s --------------------------------------------------------------- 210s Pair | 0.055437 | 0.057807 | 0.060178 | 1.0 | 32.80 210s Neigh | 0.013456 | 0.014032 | 0.014607 | 0.5 | 7.96 210s Comm | 0.038031 | 0.041877 | 0.045722 | 1.9 | 23.76 210s Output | 0.00021864 | 0.00031812 | 0.0004176 | 0.0 | 0.18 210s Modify | 0.047709 | 0.049163 | 0.050617 | 0.7 | 27.90 210s Other | | 0.01304 | | | 7.40 210s 210s Nlocal: 210 ave 211 max 209 min 210s Histogram: 1 0 0 0 0 0 0 0 0 1 210s Nghost: 50 ave 51 max 49 min 210s Histogram: 1 0 0 0 0 0 0 0 0 1 210s Neighs: 563.5 ave 569 max 558 min 210s Histogram: 1 0 0 0 0 0 0 0 0 1 210s 210s Total # of neighbors = 1127 210s Ave neighs/atom = 2.6833333 210s Neighbor list builds = 560 210s Dangerous builds = 0 210s Total wall time: 0:00:00 210s LAMMPS (4 Feb 2025) 210s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 210s using 1 OpenMP thread(s) per MPI task 210s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 210s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 210s 1 by 1 by 1 MPI processor grid 210s Created 420 atoms 210s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 210s create_atoms CPU = 0.000 seconds 210s 60 atoms in group lower 210s 60 atoms in group upper 210s 120 atoms in group boundary 210s 300 atoms in group flow 210s Setting atom values ... 210s 60 settings made for type 210s Setting atom values ... 210s 60 settings made for type 210s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 210s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 210s Neighbor list info ... 210s update: every = 1 steps, delay = 5 steps, check = yes 210s max neighbors/atom: 2000, page size: 100000 210s master list distance cutoff = 1.42246 210s ghost atom cutoff = 1.42246 210s binsize = 0.71123, bins = 37 32 1 210s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 210s (1) pair lj/cut, perpetual 210s attributes: half, newton on 210s pair build: half/bin/atomonly/newton 210s stencil: half/bin/2d 210s bin: standard 210s Setting up Verlet run ... 210s Unit style : lj 210s Current step : 0 210s Time step : 0.003 210s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 210s Step Temp E_pair E_mol TotEng Press Volume 210s 0 1 0 0 0.71190476 0.52314537 571.54286 210s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 210s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 210s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 210s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 210s 2500 1.2236323 -0.40128447 0 0.46982521 1.427689 570.03729 210s 3000 1 -0.48849374 0 0.22341102 1.5091345 553.64637 210s 3500 1.2404604 -0.63017693 0 0.25291274 1.7681156 535.22588 210s 4000 1 -0.71303348 0 -0.001128721 2.2083475 516.7312 210s 4500 1.2316246 -0.77421749 0 0.10258194 2.5788522 503.1817 210s 5000 1 -0.7999552 0 -0.088050433 3.1546066 498.48431 210s 5500 1.2347442 -0.74592478 0 0.13309548 2.695455 502.87799 210s 6000 1 -0.67044678 0 0.041457981 2.2074541 513.82275 210s 6500 1.2102356 -0.63751404 0 0.22405846 1.9921588 517.21223 210s 7000 1 -0.65043667 0 0.061468095 1.8816222 517.22883 210s 7500 1.2366099 -0.68011129 0 0.20023717 2.0387578 515.33777 210s 8000 1 -0.72046833 0 -0.0085635721 2.1380846 510.42066 210s 8500 1.2219154 -0.79786917 0 0.072018214 2.2824348 503.99311 210s 9000 1 -0.78517366 0 -0.073268895 2.6920699 500.15016 210s 9500 1.1934208 -0.7468438 0 0.10275813 2.4971524 501.17896 210s 10000 1 -0.67478993 0 0.037114833 2.3681765 504.37054 210s Loop time of 0.237536 on 1 procs for 10000 steps with 420 atoms 210s 210s Performance: 10912008.999 tau/day, 42098.800 timesteps/s, 17.681 Matom-step/s 210s 98.3% CPU use with 1 MPI tasks x 1 OpenMP threads 210s 210s MPI task timing breakdown: 210s Section | min time | avg time | max time |%varavg| %total 210s --------------------------------------------------------------- 210s Pair | 0.11271 | 0.11271 | 0.11271 | 0.0 | 47.45 210s Neigh | 0.026994 | 0.026994 | 0.026994 | 0.0 | 11.36 210s Comm | 0.0049193 | 0.0049193 | 0.0049193 | 0.0 | 2.07 210s Output | 0.00024586 | 0.00024586 | 0.00024586 | 0.0 | 0.10 210s Modify | 0.081116 | 0.081116 | 0.081116 | 0.0 | 34.15 210s Other | | 0.01155 | | | 4.86 210s 210s Nlocal: 420 ave 420 max 420 min 210s Histogram: 1 0 0 0 0 0 0 0 0 0 210s Nghost: 51 ave 51 max 51 min 210s Histogram: 1 0 0 0 0 0 0 0 0 0 210s Neighs: 1150 ave 1150 max 1150 min 210s Histogram: 1 0 0 0 0 0 0 0 0 0 210s 210s Total # of neighbors = 1150 210s Ave neighs/atom = 2.7380952 210s Neighbor list builds = 563 210s Dangerous builds = 0 210s Total wall time: 0:00:00 210s run: OK 211s autopkgtest [01:05:20]: test flow: -----------------------] 211s flow PASS 211s autopkgtest [01:05:20]: test flow: - - - - - - - - - - results - - - - - - - - - - 212s autopkgtest [01:05:21]: test friction: preparing testbed 212s Reading package lists... 212s Building dependency tree... 212s Reading state information... 212s Solving dependencies... 212s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 213s autopkgtest [01:05:22]: test friction: [----------------------- 213s LAMMPS (4 Feb 2025) 213s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 213s using 1 OpenMP thread(s) per MPI task 213s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 213s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 213s 2 by 1 by 1 MPI processor grid 213s Created 750 atoms 213s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 213s create_atoms CPU = 0.000 seconds 213s Created 750 atoms 213s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 213s create_atoms CPU = 0.000 seconds 213s Created 112 atoms 213s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 213s create_atoms CPU = 0.000 seconds 213s Created 112 atoms 213s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 213s create_atoms CPU = 0.000 seconds 213s 750 atoms in group lo 213s 862 atoms in group lo 213s 750 atoms in group hi 213s 862 atoms in group hi 213s 150 atoms in group lo-fixed 213s 150 atoms in group hi-fixed 213s 300 atoms in group boundary 213s 1424 atoms in group mobile 213s Setting atom values ... 213s 150 settings made for type 213s Setting atom values ... 213s 150 settings made for type 213s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 213s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 213s Neighbor list info ... 213s update: every = 1 steps, delay = 5 steps, check = yes 213s max neighbors/atom: 2000, page size: 100000 213s master list distance cutoff = 2.8 213s ghost atom cutoff = 2.8 213s binsize = 1.4, bins = 41 31 1 213s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 213s (1) pair lj/cut, perpetual 213s attributes: half, newton on 213s pair build: half/bin/atomonly/newton 213s stencil: half/bin/2d 213s bin: standard 213s Setting up Verlet run ... 213s Unit style : lj 213s Current step : 0 213s Time step : 0.0025 213s Per MPI rank memory allocation (min/avg/max) = 3.05 | 3.05 | 3.05 Mbytes 213s Step Temp E_pair E_mol TotEng Press Volume 213s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 213s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 213s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 213s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 213s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 214s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 214s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314788 2444.9333 214s 7000 0.11587085 -3.0413277 0 -2.9935075 -0.37543775 2444.9333 214s 8000 0.1 -3.029647 0 -2.9883767 -0.41884104 2444.9333 214s 9000 0.11588457 -3.0253422 0 -2.9775163 -0.43584065 2444.9333 214s 10000 0.1 -3.0293042 0 -2.9880339 -0.36809832 2444.9333 214s 11000 0.11830962 -3.029318 0 -2.9804913 -0.44710474 2444.9333 214s 12000 0.1 -3.0283785 0 -2.9871082 -0.20225766 2444.9333 215s 13000 0.11646107 -3.0351824 0 -2.9871185 -0.46506235 2444.9333 215s 14000 0.11264391 -3.0399048 0 -2.9934163 -0.23851225 2444.9333 215s 15000 0.11397557 -3.0400714 0 -2.9930333 -0.27494778 2444.9333 215s 16000 0.11527553 -3.0423634 0 -2.9947889 -0.27314794 2444.9333 215s 17000 0.11820003 -3.0419531 0 -2.9931715 -0.39533728 2444.9333 215s 18000 0.11165087 -3.0494285 0 -3.0033499 -0.25447692 2444.9333 215s 19000 0.11450729 -3.0488755 0 -3.0016179 -0.27183418 2444.9333 216s 20000 0.1090499 -3.0490281 0 -3.0040229 -0.39612969 2444.9333 216s Loop time of 2.557 on 2 procs for 20000 steps with 1724 atoms 216s 216s Performance: 1689478.302 tau/day, 7821.659 timesteps/s, 13.485 Matom-step/s 216s 97.0% CPU use with 2 MPI tasks x 1 OpenMP threads 216s 216s MPI task timing breakdown: 216s Section | min time | avg time | max time |%varavg| %total 216s --------------------------------------------------------------- 216s Pair | 1.7259 | 1.8195 | 1.9131 | 6.9 | 71.16 216s Neigh | 0.14293 | 0.15292 | 0.16291 | 2.6 | 5.98 216s Comm | 0.20372 | 0.31066 | 0.4176 | 19.2 | 12.15 216s Output | 0.00048041 | 0.0014103 | 0.0023402 | 2.5 | 0.06 216s Modify | 0.17991 | 0.18764 | 0.19536 | 1.8 | 7.34 216s Other | | 0.08488 | | | 3.32 216s 216s Nlocal: 862 ave 874 max 850 min 216s Histogram: 1 0 0 0 0 0 0 0 0 1 216s Nghost: 165.5 ave 166 max 165 min 216s Histogram: 1 0 0 0 0 0 0 0 0 1 216s Neighs: 7198 ave 7283 max 7113 min 216s Histogram: 1 0 0 0 0 0 0 0 0 1 216s 216s Total # of neighbors = 14396 216s Ave neighs/atom = 8.350348 216s Neighbor list builds = 720 216s Dangerous builds = 0 216s Total wall time: 0:00:02 216s LAMMPS (4 Feb 2025) 220s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 220s using 1 OpenMP thread(s) per MPI task 220s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 220s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 220s 1 by 1 by 1 MPI processor grid 220s Created 750 atoms 220s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 220s create_atoms CPU = 0.000 seconds 220s Created 750 atoms 220s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 220s create_atoms CPU = 0.000 seconds 220s Created 112 atoms 220s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 220s create_atoms CPU = 0.000 seconds 220s Created 112 atoms 220s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 220s create_atoms CPU = 0.000 seconds 220s 750 atoms in group lo 220s 862 atoms in group lo 220s 750 atoms in group hi 220s 862 atoms in group hi 220s 150 atoms in group lo-fixed 220s 150 atoms in group hi-fixed 220s 300 atoms in group boundary 220s 1424 atoms in group mobile 220s Setting atom values ... 220s 150 settings made for type 220s Setting atom values ... 220s 150 settings made for type 220s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 220s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 220s Neighbor list info ... 220s update: every = 1 steps, delay = 5 steps, check = yes 220s max neighbors/atom: 2000, page size: 100000 220s master list distance cutoff = 2.8 220s ghost atom cutoff = 2.8 220s binsize = 1.4, bins = 41 31 1 220s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 220s (1) pair lj/cut, perpetual 220s attributes: half, newton on 220s pair build: half/bin/atomonly/newton 220s stencil: half/bin/2d 220s bin: standard 220s Setting up Verlet run ... 220s Unit style : lj 220s Current step : 0 220s Time step : 0.0025 220s Per MPI rank memory allocation (min/avg/max) = 3.059 | 3.059 | 3.059 Mbytes 220s Step Temp E_pair E_mol TotEng Press Volume 220s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 220s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 220s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 220s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 220s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 220s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 220s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 220s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431662 2444.9333 220s 8000 0.10658321 -3.036405 0 -2.9924178 -0.4572299 2444.9333 220s 9000 0.11648934 -3.0271687 0 -2.9790932 -0.45898613 2444.9333 220s 10000 0.10677611 -3.0303232 0 -2.9862564 -0.35269781 2444.9333 220s 11000 0.11746006 -3.0346344 0 -2.9861583 -0.46341365 2444.9333 220s 12000 0.112074 -3.036913 0 -2.9906597 -0.21768573 2444.9333 220s 13000 0.11249017 -3.0395382 0 -2.9931132 -0.44391864 2444.9333 220s 14000 0.11381248 -3.0362108 0 -2.9892401 -0.30885868 2444.9333 220s 15000 0.10964575 -3.0436265 0 -2.9983754 -0.26625672 2444.9333 220s 16000 0.10798733 -3.0460787 0 -3.001512 -0.27971711 2444.9333 220s 17000 0.11191725 -3.0455618 0 -2.9993732 -0.36993854 2444.9333 220s 18000 0.11418143 -3.0485595 0 -3.0014364 -0.24776847 2444.9333 220s 19000 0.11028213 -3.0473558 0 -3.001842 -0.30249398 2444.9333 220s 20000 0.11512925 -3.0504969 0 -3.0029827 -0.36022205 2444.9333 220s Loop time of 4.64241 on 1 procs for 20000 steps with 1724 atoms 220s 220s Performance: 930550.772 tau/day, 4308.105 timesteps/s, 7.427 Matom-step/s 220s 93.7% CPU use with 1 MPI tasks x 1 OpenMP threads 220s 220s MPI task timing breakdown: 220s Section | min time | avg time | max time |%varavg| %total 220s --------------------------------------------------------------- 220s Pair | 3.7821 | 3.7821 | 3.7821 | 0.0 | 81.47 220s Neigh | 0.31341 | 0.31341 | 0.31341 | 0.0 | 6.75 220s Comm | 0.027528 | 0.027528 | 0.027528 | 0.0 | 0.59 220s Output | 0.0013055 | 0.0013055 | 0.0013055 | 0.0 | 0.03 220s Modify | 0.41348 | 0.41348 | 0.41348 | 0.0 | 8.91 220s Other | | 0.1045 | | | 2.25 220s 220s Nlocal: 1724 ave 1724 max 1724 min 220s Histogram: 1 0 0 0 0 0 0 0 0 0 220s Nghost: 145 ave 145 max 145 min 220s Histogram: 1 0 0 0 0 0 0 0 0 0 220s Neighs: 14397 ave 14397 max 14397 min 220s Histogram: 1 0 0 0 0 0 0 0 0 0 220s 220s Total # of neighbors = 14397 220s Ave neighs/atom = 8.3509281 220s Neighbor list builds = 723 220s Dangerous builds = 0 220s Total wall time: 0:00:04 220s run: OK 221s autopkgtest [01:05:30]: test friction: -----------------------] 221s autopkgtest [01:05:30]: test friction: - - - - - - - - - - results - - - - - - - - - - 221s friction PASS 221s autopkgtest [01:05:30]: test hugo: preparing testbed 222s Reading package lists... 222s Building dependency tree... 222s Reading state information... 222s Solving dependencies... 222s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 223s autopkgtest [01:05:32]: test hugo: [----------------------- 223s LAMMPS (4 Feb 2025) 223s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 223s using 1 OpenMP thread(s) per MPI task 223s Lattice spacing in x,y,z = 1.4142135 2 2 223s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 223s 1 by 1 by 2 MPI processor grid 223s Created 1000 atoms 223s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 223s create_atoms CPU = 0.000 seconds 223s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 223s Neighbor list info ... 223s update: every = 1 steps, delay = 0 steps, check = yes 223s max neighbors/atom: 2000, page size: 100000 223s master list distance cutoff = 1.8475372 223s ghost atom cutoff = 1.8475372 223s binsize = 0.92376862, bins = 8 11 11 223s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 223s (1) pair lj/cubic, perpetual 223s attributes: half, newton on 223s pair build: half/bin/atomonly/newton 223s stencil: half/bin/3d 223s bin: standard 223s Setting up cg style minimization ... 223s Unit style : lj 223s Current step : 0 223s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 223s (src/min.cpp:219) 223s Per MPI rank memory allocation (min/avg/max) = 4.237 | 4.237 | 4.237 Mbytes 223s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 223s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 223s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 223s 134 0 -6.3344253 -6.3344253 -4.2957391e-13 -4.6556764e-13 -4.6545223e-13 6.9780267 9.8684199 9.8684199 223s Loop time of 0.0378343 on 2 procs for 134 steps with 1000 atoms 223s 223s 104.8% CPU use with 2 MPI tasks x 1 OpenMP threads 223s 223s Minimization stats: 223s Stopping criterion = force tolerance 223s Energy initial, next-to-last, final = 223s -6.29375358358574 -6.33442531515467 -6.33442531515467 223s Force two-norm initial, final = 3395.2895 5.526433e-10 223s Force max component initial, final = 1960.2713 3.2059964e-10 223s Final line search alpha, max atom move = 1 3.2059964e-10 223s Iterations, force evaluations = 134 137 223s 223s MPI task timing breakdown: 223s Section | min time | avg time | max time |%varavg| %total 223s --------------------------------------------------------------- 223s Pair | 0.025077 | 0.027297 | 0.029516 | 1.3 | 72.15 223s Neigh | 0.00044768 | 0.00047604 | 0.0005044 | 0.0 | 1.26 223s Comm | 0.0028508 | 0.0050117 | 0.0071727 | 3.1 | 13.25 223s Output | 1.6556e-05 | 7.623e-05 | 0.0001359 | 0.0 | 0.20 223s Modify | 0 | 0 | 0 | 0.0 | 0.00 223s Other | | 0.004973 | | | 13.15 223s 223s Nlocal: 500 ave 550 max 450 min 223s Histogram: 1 0 0 0 0 0 0 0 0 1 223s Nghost: 1214 ave 1264 max 1164 min 223s Histogram: 1 0 0 0 0 0 0 0 0 1 223s Neighs: 10500 ave 11550 max 9450 min 223s Histogram: 1 0 0 0 0 0 0 0 0 1 223s 223s Total # of neighbors = 21000 223s Ave neighs/atom = 21 223s Neighbor list builds = 1 223s Dangerous builds = 0 223s System init for write_restart ... 223s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 223s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 223s using 1 OpenMP thread(s) per MPI task 223s Reading restart file ... 223s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 223s restoring atom style atomic from restart 223s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 223s 1 by 1 by 2 MPI processor grid 223s restoring pair style lj/cubic from restart 223s 1000 atoms 223s read_restart CPU = 0.000 seconds 223s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 223s Neighbor list info ... 223s update: every = 1 steps, delay = 0 steps, check = yes 223s max neighbors/atom: 2000, page size: 100000 223s master list distance cutoff = 1.7475372 223s ghost atom cutoff = 1.7475372 223s binsize = 0.87376862, bins = 8 12 12 223s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 223s (1) pair lj/cubic, perpetual 223s attributes: half, newton on 223s pair build: half/bin/atomonly/newton 223s stencil: half/bin/3d 223s bin: standard 223s Setting up Verlet run ... 223s Unit style : lj 223s Current step : 0 223s Time step : 0.001 223s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 223s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 223s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 223s 1000 0.010266754 0.015384732 -2.1717334 -4183.9192 129.07798 58.489025 8.3141524 -4.1817628 0.9362044 23.511491 3.7372332 224s 2000 0.40259797 0.60329306 -5.627962 -1085.8312 12.843116 1.8560907 9.4470663 -1.0808065 -0.37219276 14.040385 0.6226867 224s 3000 0.47352764 0.70958118 -3.847268 -3270.82 65.659321 23.910002 8.6682025 -3.2676824 -0.14827512 19.052005 2.3460318 224s 4000 0.51027892 0.76465296 -4.3666607 -2668.4808 36.299422 5.4253511 8.7365217 -2.6648788 -0.43242827 14.580921 1.6947004 225s 5000 0.27107084 0.40619965 -4.8148544 -1808.6901 35.499158 7.8616668 8.7438741 -1.8042815 -0.17683868 14.465657 1.6705446 225s 6000 0.14589565 0.21862463 -4.1603429 -2363.5903 43.618418 5.9789884 8.3935297 -2.3596486 -0.050591412 14.026367 2.1169125 225s 7000 0.085822195 0.12860456 -4.2874019 -2281.4454 40.483746 3.874914 8.3489633 -2.2772866 -0.011160894 13.315551 2.0696635 226s 8000 0.039594243 0.059331974 -4.3555951 -2176.8532 39.840893 3.7201608 8.3381853 -2.1725569 0.028292259 13.163321 2.0603537 226s 9000 0.025376486 0.038026664 -4.2983996 -2330.0794 39.628092 2.631482 8.2935294 -2.3258191 0.032864503 12.942681 2.084285 226s 10000 0.020305022 0.030427075 -4.2090968 -1864.3718 42.005843 3.1326248 8.2404246 -1.8601931 0.074717463 13.108473 2.1814026 226s Loop time of 3.07288 on 2 procs for 10000 steps with 1000 atoms 226s 226s Performance: 281169.512 tau/day, 3254.277 timesteps/s, 3.254 Matom-step/s 226s 96.5% CPU use with 2 MPI tasks x 1 OpenMP threads 226s 226s MPI task timing breakdown: 226s Section | min time | avg time | max time |%varavg| %total 226s --------------------------------------------------------------- 226s Pair | 2.3275 | 2.3344 | 2.3413 | 0.5 | 75.97 226s Neigh | 0.089401 | 0.091368 | 0.093335 | 0.7 | 2.97 226s Comm | 0.31763 | 0.32702 | 0.3364 | 1.6 | 10.64 226s Output | 0.0004843 | 0.0007027 | 0.0009211 | 0.0 | 0.02 226s Modify | 0.28446 | 0.2858 | 0.28713 | 0.2 | 9.30 226s Other | | 0.03357 | | | 1.09 226s 226s Nlocal: 500 ave 509 max 491 min 226s Histogram: 1 0 0 0 0 0 0 0 0 1 226s Nghost: 1346.5 ave 1369 max 1324 min 226s Histogram: 1 0 0 0 0 0 0 0 0 1 226s Neighs: 10311.5 ave 10391 max 10232 min 226s Histogram: 1 0 0 0 0 0 0 0 0 1 226s 226s Total # of neighbors = 20623 226s Ave neighs/atom = 20.623 226s Neighbor list builds = 205 226s Dangerous builds = 0 226s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 226s using 1 OpenMP thread(s) per MPI task 226s Reading restart file ... 226s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 226s restoring atom style atomic from restart 226s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 226s 1 by 1 by 2 MPI processor grid 226s restoring pair style lj/cubic from restart 226s 1000 atoms 226s read_restart CPU = 0.001 seconds 226s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 226s Neighbor list info ... 226s update: every = 1 steps, delay = 0 steps, check = yes 226s max neighbors/atom: 2000, page size: 100000 226s master list distance cutoff = 1.7475372 226s ghost atom cutoff = 1.7475372 226s binsize = 0.87376862, bins = 8 12 12 226s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 226s (1) pair lj/cubic, perpetual 226s attributes: half, newton on 226s pair build: half/bin/atomonly/newton 226s stencil: half/bin/3d 226s bin: standard 226s Setting up Verlet run ... 226s Unit style : lj 226s Current step : 0 226s Time step : 0.001 226s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 226s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 226s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 226s 1000 0.0062790167 0.0094091065 -5.989181 -1670.9917 18.916499 7.5833446 9.2337867 -1.6650119 0.023434204 13.976079 0.92136905 227s 2000 0.0066373266 0.0099460339 -5.4562974 -2537.9609 37.066673 15.536927 8.9495838 -2.5325146 0.10236546 16.325445 1.5455989 227s 3000 0.006890427 0.010325305 -5.3657707 -2643.943 39.911802 16.807453 8.9154493 -2.6385876 0.11827588 16.639682 1.6328058 227s 4000 0.0073314031 0.010986107 -5.3630545 -2655.872 40.003435 16.849611 8.9144058 -2.6505199 0.11864983 16.649819 1.6355581 228s 5000 0.0075004567 0.011239434 -5.3630119 -2664.6029 39.9983 16.845885 8.9144863 -2.6592512 0.11845678 16.649441 1.6353853 228s 6000 0.0078159402 0.011712186 -5.3629866 -2673.5606 39.999501 16.84634 8.9144972 -2.6682093 0.11829898 16.649784 1.6354006 228s 7000 0.0078365866 0.011743125 -5.3625076 -2682.4138 40.001112 16.844623 8.9145083 -2.6770631 0.11814173 16.650214 1.6354243 228s 8000 0.0075482436 0.011311043 -5.3616205 -2690.9824 39.996485 16.835974 8.9145436 -2.6856321 0.11792207 16.649554 1.6352999 229s 9000 0.0083133885 0.012457613 -5.362258 -2700.1342 39.99904 16.841287 8.9145642 -2.6947844 0.11777124 16.650263 1.6353348 229s 10000 0.0086355586 0.012940385 -5.3622381 -2709.0315 39.997759 16.839976 8.9145913 -2.7036822 0.11757678 16.650228 1.6352858 229s Loop time of 2.72687 on 2 procs for 10000 steps with 1000 atoms 229s 229s Performance: 316846.880 tau/day, 3667.209 timesteps/s, 3.667 Matom-step/s 229s 95.3% CPU use with 2 MPI tasks x 1 OpenMP threads 229s 229s MPI task timing breakdown: 229s Section | min time | avg time | max time |%varavg| %total 229s --------------------------------------------------------------- 229s Pair | 2.0758 | 2.1007 | 2.1257 | 1.7 | 77.04 229s Neigh | 0.0044788 | 0.0044921 | 0.0045053 | 0.0 | 0.16 229s Comm | 0.26385 | 0.28863 | 0.31341 | 4.6 | 10.58 229s Output | 0.00047923 | 0.0014446 | 0.00241 | 2.5 | 0.05 229s Modify | 0.29775 | 0.29858 | 0.29942 | 0.2 | 10.95 229s Other | | 0.03299 | | | 1.21 229s 229s Nlocal: 500 ave 508 max 492 min 229s Histogram: 1 0 0 0 0 0 0 0 0 1 229s Nghost: 1214 ave 1222 max 1206 min 229s Histogram: 1 0 0 0 0 0 0 0 0 1 229s Neighs: 10500 ave 10668 max 10332 min 229s Histogram: 1 0 0 0 0 0 0 0 0 1 229s 229s Total # of neighbors = 21000 229s Ave neighs/atom = 21 229s Neighbor list builds = 10 229s Dangerous builds = 0 229s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 229s using 1 OpenMP thread(s) per MPI task 229s Reading restart file ... 229s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 229s restoring atom style atomic from restart 229s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 229s 1 by 1 by 2 MPI processor grid 229s restoring pair style lj/cubic from restart 229s 1000 atoms 229s read_restart CPU = 0.001 seconds 229s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 229s Neighbor list info ... 229s update: every = 1 steps, delay = 0 steps, check = yes 229s max neighbors/atom: 2000, page size: 100000 229s master list distance cutoff = 1.7475372 229s ghost atom cutoff = 1.7475372 229s binsize = 0.87376862, bins = 8 12 12 229s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 229s (1) pair lj/cubic, perpetual 229s attributes: half, newton on 229s pair build: half/bin/atomonly/newton 229s stencil: half/bin/3d 229s bin: standard 229s Setting up Verlet run ... 229s Unit style : lj 229s Current step : 0 229s Time step : 0.001 229s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 229s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 229s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 229s 1000 0.0079519127 0.011915941 -5.50188 -838.80672 35.61641 14.888864 8.9677618 -0.83331675 0.093886135 16.160598 1.5002751 229s 2000 0.019411054 0.029087464 -5.2936665 -1019.5497 41.77353 17.564044 8.8958463 -1.0142851 0.11811209 16.853902 1.687248 230s 3000 0.047492482 0.071167484 -5.3441861 -971.66654 39.02349 16.097707 8.9321705 -0.96639352 0.073376741 16.597136 1.600557 230s 4000 0.12096417 0.18126481 -5.2102393 -1315.5664 40.846153 16.436163 8.9200987 -1.3105374 0.017574117 16.873813 1.6478442 231s 5000 0.1272463 0.19067858 -5.2517864 -1192.2753 39.105833 15.560562 8.9406854 -1.1872142 -0.00025457398 16.689339 1.5950732 231s 6000 0.14515651 0.21751704 -5.1820215 -1372.0064 40.682715 16.119979 8.9220924 -1.3670419 -0.0066818447 16.857436 1.6428451 231s 7000 0.12286771 0.18411727 -5.2596973 -1200.0518 39.255412 15.703071 8.938111 -1.1949762 0.0073588891 16.698492 1.6002966 232s 8000 0.1428801 0.21410583 -5.1748689 -1340.8702 40.704199 16.116121 8.9238602 -1.3359094 -0.0085191302 16.877378 1.6417704 232s 9000 0.12012635 0.18000933 -5.2541332 -1187.2981 39.322347 15.708304 8.9368444 -1.182224 0.0081737382 16.701561 1.6027307 232s 10000 0.1485814 0.22264922 -5.184468 -1359.9408 40.542555 16.055637 8.9246711 -1.3549789 -0.010330357 16.85094 1.6378163 232s Loop time of 3.47746 on 2 procs for 10000 steps with 1000 atoms 232s 232s Performance: 248457.329 tau/day, 2875.664 timesteps/s, 2.876 Matom-step/s 232s 83.8% CPU use with 2 MPI tasks x 1 OpenMP threads 232s 232s MPI task timing breakdown: 232s Section | min time | avg time | max time |%varavg| %total 232s --------------------------------------------------------------- 232s Pair | 2.4207 | 2.4255 | 2.4303 | 0.3 | 69.75 232s Neigh | 0.049509 | 0.049643 | 0.049778 | 0.1 | 1.43 232s Comm | 0.51575 | 0.52073 | 0.52571 | 0.7 | 14.97 232s Output | 0.0008662 | 0.0024207 | 0.0039752 | 3.2 | 0.07 232s Modify | 0.41451 | 0.4177 | 0.4209 | 0.5 | 12.01 232s Other | | 0.06148 | | | 1.77 232s 232s Nlocal: 500 ave 510 max 490 min 232s Histogram: 1 0 0 0 0 0 0 0 0 1 232s Nghost: 1216.5 ave 1227 max 1206 min 232s Histogram: 1 0 0 0 0 0 0 0 0 1 232s Neighs: 10311 ave 10520 max 10102 min 232s Histogram: 1 0 0 0 0 0 0 0 0 1 232s 232s Total # of neighbors = 20622 232s Ave neighs/atom = 20.622 232s Neighbor list builds = 95 232s Dangerous builds = 0 232s Total wall time: 0:00:09 232s LAMMPS (4 Feb 2025) 233s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 233s using 1 OpenMP thread(s) per MPI task 233s Lattice spacing in x,y,z = 1.4142135 2 2 233s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 233s 1 by 1 by 1 MPI processor grid 233s Created 1000 atoms 233s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 233s create_atoms CPU = 0.001 seconds 233s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 233s Neighbor list info ... 233s update: every = 1 steps, delay = 0 steps, check = yes 233s max neighbors/atom: 2000, page size: 100000 233s master list distance cutoff = 1.8475372 233s ghost atom cutoff = 1.8475372 233s binsize = 0.92376862, bins = 8 11 11 233s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 233s (1) pair lj/cubic, perpetual 233s attributes: half, newton on 233s pair build: half/bin/atomonly/newton 233s stencil: half/bin/3d 233s bin: standard 233s Setting up cg style minimization ... 233s Unit style : lj 233s Current step : 0 233s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 233s (src/min.cpp:219) 233s Per MPI rank memory allocation (min/avg/max) = 4.247 | 4.247 | 4.247 Mbytes 233s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 233s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 233s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 233s 134 0 -6.3344253 -6.3344253 -4.3566216e-13 -4.7438184e-13 -4.6860149e-13 6.9780267 9.8684199 9.8684199 233s Loop time of 0.0806385 on 1 procs for 134 steps with 1000 atoms 233s 233s 82.1% CPU use with 1 MPI tasks x 1 OpenMP threads 233s 233s Minimization stats: 233s Stopping criterion = force tolerance 233s Energy initial, next-to-last, final = 233s -6.29375358358556 -6.33442531515503 -6.33442531515503 233s Force two-norm initial, final = 3395.2895 5.6047601e-10 233s Force max component initial, final = 1960.2713 3.2666928e-10 233s Final line search alpha, max atom move = 1 3.2666928e-10 233s Iterations, force evaluations = 134 137 233s 233s MPI task timing breakdown: 233s Section | min time | avg time | max time |%varavg| %total 233s --------------------------------------------------------------- 233s Pair | 0.067954 | 0.067954 | 0.067954 | 0.0 | 84.27 233s Neigh | 0.0018322 | 0.0018322 | 0.0018322 | 0.0 | 2.27 233s Comm | 0.00089967 | 0.00089967 | 0.00089967 | 0.0 | 1.12 233s Output | 1.8759e-05 | 1.8759e-05 | 1.8759e-05 | 0.0 | 0.02 233s Modify | 0 | 0 | 0 | 0.0 | 0.00 233s Other | | 0.009934 | | | 12.32 233s 233s Nlocal: 1000 ave 1000 max 1000 min 233s Histogram: 1 0 0 0 0 0 0 0 0 0 233s Nghost: 1724 ave 1724 max 1724 min 233s Histogram: 1 0 0 0 0 0 0 0 0 0 233s Neighs: 21000 ave 21000 max 21000 min 233s Histogram: 1 0 0 0 0 0 0 0 0 0 233s 233s Total # of neighbors = 21000 233s Ave neighs/atom = 21 233s Neighbor list builds = 1 233s Dangerous builds = 0 233s System init for write_restart ... 233s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 233s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 233s using 1 OpenMP thread(s) per MPI task 233s Reading restart file ... 233s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 233s restoring atom style atomic from restart 233s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 233s 1 by 1 by 1 MPI processor grid 233s restoring pair style lj/cubic from restart 233s 1000 atoms 233s read_restart CPU = 0.000 seconds 233s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 233s Neighbor list info ... 233s update: every = 1 steps, delay = 0 steps, check = yes 233s max neighbors/atom: 2000, page size: 100000 233s master list distance cutoff = 1.7475372 233s ghost atom cutoff = 1.7475372 233s binsize = 0.87376862, bins = 8 12 12 233s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 248s (1) pair lj/cubic, perpetual 248s attributes: half, newton on 248s pair build: half/bin/atomonly/newton 248s stencil: half/bin/3d 248s bin: standard 248s Setting up Verlet run ... 248s Unit style : lj 248s Current step : 0 248s Time step : 0.001 248s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 248s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 248s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 248s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 248s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 248s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 248s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 248s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 248s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 248s 7000 0.094832865 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659777 12.95347 1.8841809 248s 8000 0.043338745 0.06494311 -4.6249402 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 248s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 248s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 248s Loop time of 5.63741 on 1 procs for 10000 steps with 1000 atoms 248s 248s Performance: 153261.901 tau/day, 1773.865 timesteps/s, 1.774 Matom-step/s 248s 94.5% CPU use with 1 MPI tasks x 1 OpenMP threads 248s 248s MPI task timing breakdown: 248s Section | min time | avg time | max time |%varavg| %total 248s --------------------------------------------------------------- 248s Pair | 4.8494 | 4.8494 | 4.8494 | 0.0 | 86.02 248s Neigh | 0.18216 | 0.18216 | 0.18216 | 0.0 | 3.23 248s Comm | 0.073389 | 0.073389 | 0.073389 | 0.0 | 1.30 248s Output | 0.00058108 | 0.00058108 | 0.00058108 | 0.0 | 0.01 248s Modify | 0.4917 | 0.4917 | 0.4917 | 0.0 | 8.72 248s Other | | 0.04023 | | | 0.71 248s 248s Nlocal: 1000 ave 1000 max 1000 min 248s Histogram: 1 0 0 0 0 0 0 0 0 0 248s Nghost: 1886 ave 1886 max 1886 min 248s Histogram: 1 0 0 0 0 0 0 0 0 0 248s Neighs: 20874 ave 20874 max 20874 min 248s Histogram: 1 0 0 0 0 0 0 0 0 0 248s 248s Total # of neighbors = 20874 248s Ave neighs/atom = 20.874 248s Neighbor list builds = 188 248s Dangerous builds = 0 248s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 248s using 1 OpenMP thread(s) per MPI task 248s Reading restart file ... 248s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 248s restoring atom style atomic from restart 248s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 248s 1 by 1 by 1 MPI processor grid 248s restoring pair style lj/cubic from restart 248s 1000 atoms 248s read_restart CPU = 0.000 seconds 248s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 248s Neighbor list info ... 248s update: every = 1 steps, delay = 0 steps, check = yes 248s max neighbors/atom: 2000, page size: 100000 248s master list distance cutoff = 1.7475372 248s ghost atom cutoff = 1.7475372 248s binsize = 0.87376862, bins = 8 12 12 248s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 248s (1) pair lj/cubic, perpetual 248s attributes: half, newton on 248s pair build: half/bin/atomonly/newton 248s stencil: half/bin/3d 248s bin: standard 248s Setting up Verlet run ... 248s Unit style : lj 248s Current step : 0 248s Time step : 0.001 248s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 248s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 248s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 248s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 248s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 248s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 248s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 248s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 248s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 248s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 248s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 248s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 248s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 248s Loop time of 5.24307 on 1 procs for 10000 steps with 1000 atoms 248s 248s Performance: 164788.937 tau/day, 1907.279 timesteps/s, 1.907 Matom-step/s 248s 89.2% CPU use with 1 MPI tasks x 1 OpenMP threads 248s 248s MPI task timing breakdown: 248s Section | min time | avg time | max time |%varavg| %total 248s --------------------------------------------------------------- 248s Pair | 4.5919 | 4.5919 | 4.5919 | 0.0 | 87.58 248s Neigh | 0.01027 | 0.01027 | 0.01027 | 0.0 | 0.20 248s Comm | 0.069587 | 0.069587 | 0.069587 | 0.0 | 1.33 248s Output | 0.0005578 | 0.0005578 | 0.0005578 | 0.0 | 0.01 248s Modify | 0.53143 | 0.53143 | 0.53143 | 0.0 | 10.14 248s Other | | 0.03937 | | | 0.75 248s 248s Nlocal: 1000 ave 1000 max 1000 min 248s Histogram: 1 0 0 0 0 0 0 0 0 0 248s Nghost: 1724 ave 1724 max 1724 min 248s Histogram: 1 0 0 0 0 0 0 0 0 0 248s Neighs: 21000 ave 21000 max 21000 min 248s Histogram: 1 0 0 0 0 0 0 0 0 0 248s 248s Total # of neighbors = 21000 248s Ave neighs/atom = 21 248s Neighbor list builds = 11 248s Dangerous builds = 0 248s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 248s using 1 OpenMP thread(s) per MPI task 248s Reading restart file ... 248s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 248s restoring atom style atomic from restart 249s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 249s 1 by 1 by 1 MPI processor grid 249s restoring pair style lj/cubic from restart 249s 1000 atoms 249s read_restart CPU = 0.001 seconds 249s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 249s Neighbor list info ... 249s update: every = 1 steps, delay = 0 steps, check = yes 249s max neighbors/atom: 2000, page size: 100000 249s master list distance cutoff = 1.7475372 249s ghost atom cutoff = 1.7475372 249s binsize = 0.87376862, bins = 8 12 12 249s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 249s (1) pair lj/cubic, perpetual 249s attributes: half, newton on 249s pair build: half/bin/atomonly/newton 249s stencil: half/bin/3d 249s bin: standard 249s Setting up Verlet run ... 249s Unit style : lj 249s Current step : 0 249s Time step : 0.001 249s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 249s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 249s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 249s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 249s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 249s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 249s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 249s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 249s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 249s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 249s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 249s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 249s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 249s Loop time of 5.39919 on 1 procs for 10000 steps with 1000 atoms 249s 249s Performance: 160024.013 tau/day, 1852.130 timesteps/s, 1.852 Matom-step/s 249s 89.4% CPU use with 1 MPI tasks x 1 OpenMP threads 249s 249s MPI task timing breakdown: 249s Section | min time | avg time | max time |%varavg| %total 249s --------------------------------------------------------------- 249s Pair | 4.6366 | 4.6366 | 4.6366 | 0.0 | 85.88 249s Neigh | 0.09359 | 0.09359 | 0.09359 | 0.0 | 1.73 249s Comm | 0.074784 | 0.074784 | 0.074784 | 0.0 | 1.39 249s Output | 0.00055775 | 0.00055775 | 0.00055775 | 0.0 | 0.01 249s Modify | 0.55052 | 0.55052 | 0.55052 | 0.0 | 10.20 249s Other | | 0.04318 | | | 0.80 249s 249s Nlocal: 1000 ave 1000 max 1000 min 249s Histogram: 1 0 0 0 0 0 0 0 0 0 249s Nghost: 1724 ave 1724 max 1724 min 249s Histogram: 1 0 0 0 0 0 0 0 0 0 249s Neighs: 20654 ave 20654 max 20654 min 249s Histogram: 1 0 0 0 0 0 0 0 0 0 249s 249s Total # of neighbors = 20654 249s Ave neighs/atom = 20.654 249s Neighbor list builds = 94 249s Dangerous builds = 0 249s Total wall time: 0:00:16 249s run: OK 249s autopkgtest [01:05:58]: test hugo: -----------------------] 250s hugo PASS 250s autopkgtest [01:05:59]: test hugo: - - - - - - - - - - results - - - - - - - - - - 250s autopkgtest [01:05:59]: test command1: preparing testbed 276s Creating nova instance adt-resolute-s390x-lammps-20251020-010149-juju-7f2275-prod-proposed-migration-environment-15-3759ba76-85f6-4ba9-bf5d-157171f7af86 from image adt/ubuntu-resolute-s390x-server-20251019.img (UUID 7a83b4ca-2eb3-4cb0-b8d6-be2f16efcb4e)... 328s autopkgtest [01:07:17]: testbed dpkg architecture: s390x 329s autopkgtest [01:07:18]: testbed apt version: 3.1.8ubuntu1 329s autopkgtest [01:07:18]: @@@@@@@@@@@@@@@@@@@@ test bed setup 329s autopkgtest [01:07:18]: testbed release detected to be: resolute 330s autopkgtest [01:07:19]: updating testbed package index (apt update) 330s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 330s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 330s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 330s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 331s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [450 kB] 331s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [51.0 kB] 331s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 331s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [15.8 kB] 331s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x Packages [103 kB] 331s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted s390x Packages [940 B] 331s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe s390x Packages [257 kB] 331s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse s390x Packages [6184 B] 331s Fetched 971 kB in 1s (929 kB/s) 332s Reading package lists... 332s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 332s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 332s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 332s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 333s Reading package lists... 333s Reading package lists... 333s Building dependency tree... 333s Reading state information... 333s Calculating upgrade... 333s The following packages will be upgraded: 333s distro-info-data dpkg dpkg-dev libaudit-common libaudit1 libdpkg-perl 333s libseccomp2 libsemanage-common libsemanage2 python-apt-common python3-apt 333s python3-cffi-backend 334s 12 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 334s Need to get 3223 kB of archives. 334s After this operation, 652 kB of additional disk space will be used. 334s Get:1 http://ftpmaster.internal/ubuntu resolute/main s390x dpkg s390x 1.22.21ubuntu4 [1287 kB] 334s Get:2 http://ftpmaster.internal/ubuntu resolute/main s390x libaudit-common all 1:4.0.5-1build2 [6596 B] 334s Get:3 http://ftpmaster.internal/ubuntu resolute/main s390x libaudit1 s390x 1:4.0.5-1build2 [57.0 kB] 334s Get:4 http://ftpmaster.internal/ubuntu resolute/main s390x libsemanage-common all 3.8.1-1build1 [7916 B] 334s Get:5 http://ftpmaster.internal/ubuntu resolute/main s390x libsemanage2 s390x 3.8.1-1build1 [99.1 kB] 334s Get:6 http://ftpmaster.internal/ubuntu resolute/main s390x distro-info-data all 0.68 [7378 B] 334s Get:7 http://ftpmaster.internal/ubuntu resolute/main s390x libseccomp2 s390x 2.6.0-2ubuntu3 [57.5 kB] 334s Get:8 http://ftpmaster.internal/ubuntu resolute/main s390x python-apt-common all 3.0.0ubuntu2 [21.7 kB] 334s Get:9 http://ftpmaster.internal/ubuntu resolute/main s390x python3-apt s390x 3.0.0ubuntu2 [198 kB] 334s Get:10 http://ftpmaster.internal/ubuntu resolute/main s390x python3-cffi-backend s390x 1.17.1-3build1 [113 kB] 334s Get:11 http://ftpmaster.internal/ubuntu resolute/main s390x dpkg-dev all 1.22.21ubuntu4 [1088 kB] 335s Get:12 http://ftpmaster.internal/ubuntu resolute/main s390x libdpkg-perl all 1.22.21ubuntu4 [280 kB] 335s dpkg-preconfigure: unable to re-open stdin: No such file or directory 335s Fetched 3223 kB in 1s (3067 kB/s) 335s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56852 files and directories currently installed.) 335s Preparing to unpack .../dpkg_1.22.21ubuntu4_s390x.deb ... 335s Unpacking dpkg (1.22.21ubuntu4) over (1.22.21ubuntu3) ... 335s Setting up dpkg (1.22.21ubuntu4) ... 335s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56852 files and directories currently installed.) 335s Preparing to unpack .../libaudit-common_1%3a4.0.5-1build2_all.deb ... 335s Unpacking libaudit-common (1:4.0.5-1build2) over (1:4.0.5-1build1) ... 335s Setting up libaudit-common (1:4.0.5-1build2) ... 335s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56852 files and directories currently installed.) 335s Preparing to unpack .../libaudit1_1%3a4.0.5-1build2_s390x.deb ... 335s Unpacking libaudit1:s390x (1:4.0.5-1build2) over (1:4.0.5-1build1) ... 336s Setting up libaudit1:s390x (1:4.0.5-1build2) ... 336s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56852 files and directories currently installed.) 336s Preparing to unpack .../0-libsemanage-common_3.8.1-1build1_all.deb ... 336s Unpacking libsemanage-common (3.8.1-1build1) over (3.8.1-1) ... 336s Preparing to unpack .../1-libsemanage2_3.8.1-1build1_s390x.deb ... 336s Unpacking libsemanage2:s390x (3.8.1-1build1) over (3.8.1-1) ... 336s Preparing to unpack .../2-distro-info-data_0.68_all.deb ... 336s Unpacking distro-info-data (0.68) over (0.67~ubuntu1) ... 336s Preparing to unpack .../3-libseccomp2_2.6.0-2ubuntu3_s390x.deb ... 336s Unpacking libseccomp2:s390x (2.6.0-2ubuntu3) over (2.6.0-2ubuntu2) ... 336s Preparing to unpack .../4-python-apt-common_3.0.0ubuntu2_all.deb ... 336s Unpacking python-apt-common (3.0.0ubuntu2) over (3.0.0ubuntu1) ... 336s Preparing to unpack .../5-python3-apt_3.0.0ubuntu2_s390x.deb ... 336s Unpacking python3-apt (3.0.0ubuntu2) over (3.0.0ubuntu1) ... 336s Preparing to unpack .../6-python3-cffi-backend_1.17.1-3build1_s390x.deb ... 336s Unpacking python3-cffi-backend:s390x (1.17.1-3build1) over (1.17.1-3) ... 336s Preparing to unpack .../7-dpkg-dev_1.22.21ubuntu4_all.deb ... 336s Unpacking dpkg-dev (1.22.21ubuntu4) over (1.22.21ubuntu3) ... 336s Preparing to unpack .../8-libdpkg-perl_1.22.21ubuntu4_all.deb ... 336s Unpacking libdpkg-perl (1.22.21ubuntu4) over (1.22.21ubuntu3) ... 336s Setting up distro-info-data (0.68) ... 336s Setting up libsemanage-common (3.8.1-1build1) ... 336s Setting up libseccomp2:s390x (2.6.0-2ubuntu3) ... 336s Setting up libdpkg-perl (1.22.21ubuntu4) ... 336s Setting up python-apt-common (3.0.0ubuntu2) ... 336s Setting up libsemanage2:s390x (3.8.1-1build1) ... 336s Setting up python3-cffi-backend:s390x (1.17.1-3build1) ... 336s Setting up python3-apt (3.0.0ubuntu2) ... 336s Setting up dpkg-dev (1.22.21ubuntu4) ... 336s Processing triggers for man-db (2.13.1-1) ... 337s Processing triggers for libc-bin (2.42-0ubuntu3) ... 338s autopkgtest [01:07:27]: upgrading testbed (apt dist-upgrade and autopurge) 338s Reading package lists... 357s Building dependency tree... 357s autopkgtest [01:07:28]: rebooting testbed after setup commands that affected boot 357s Reading state information... 357s Calculating upgrade... 357s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 357s Reading package lists... 357s Building dependency tree... 357s Reading state information... 357s Solving dependencies... 357s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 368s Reading package lists... 369s Building dependency tree... 369s Reading state information... 369s Solving dependencies... 369s The following NEW packages will be installed: 369s autoconf automake autotools-dev cpp-15 cpp-15-s390x-linux-gnu 369s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-15 369s gcc-15-s390x-linux-gnu gfortran-15 gfortran-15-s390x-linux-gnu libaec0 369s libasan8 libblas3 libcairo2 libcc1-0 libdeflate0 libdouble-conversion3 369s libdrm-amdgpu1 libevent-2.1-7t64 libevent-core-2.1-7t64 libevent-dev 369s libevent-extra-2.1-7t64 libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 369s libfabric1 libfftw3-double3 libfontconfig1 libfreetype6 libgbm1 369s libgcc-15-dev libgfortran-15-dev libgfortran5 libgl1 libgl1-mesa-dri 369s libgl2ps1.4 libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 libhdf5-310 369s libhdf5-hl-310 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev 369s libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery 369s libjs-jquery-ui libjsoncpp26 libkim-api2 liblammps-dev liblammps0t64 369s liblapack3 libltdl-dev libltdl7 libmpc3 libnetcdf22 libnl-3-dev 369s libnl-route-3-dev libnuma-dev libogg0 libopengl0 libopenmpi-dev libopenmpi40 369s libpciaccess0 libpixman-1-0 libpnetcdf6 libproj25 librdmacm1t64 libsharpyuv0 369s libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheoradec1 369s libtheoraenc1 libtiff6 libtk8.6 libubsan1 libvoro++1 libvtk9.3 libvulkan1 369s libwebp7 libx11-xcb1 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 369s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxft2 libxnvctrl0 369s libxrender1 libxshmfence1 libxss1 libxxf86vm1 m4 mesa-libgallium 369s mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin 369s openmpi-common proj-data python3-lammps x11-common zlib1g-dev 369s 0 upgraded, 117 newly installed, 0 to remove and 0 not upgraded. 369s Need to get 127 MB of archives. 369s After this operation, 483 MB of additional disk space will be used. 369s Get:1 http://ftpmaster.internal/ubuntu resolute/main s390x m4 s390x 1.4.19-8 [259 kB] 369s Get:2 http://ftpmaster.internal/ubuntu resolute/main s390x autoconf all 2.72-3.1ubuntu1 [384 kB] 370s Get:3 http://ftpmaster.internal/ubuntu resolute/main s390x autotools-dev all 20240727.1 [43.4 kB] 370s Get:4 http://ftpmaster.internal/ubuntu resolute/main s390x automake all 1:1.17-4ubuntu1 [572 kB] 370s Get:5 http://ftpmaster.internal/ubuntu resolute/main s390x libisl23 s390x 0.27-1 [704 kB] 370s Get:6 http://ftpmaster.internal/ubuntu resolute/main s390x libmpc3 s390x 1.3.1-1build3 [57.6 kB] 370s Get:7 http://ftpmaster.internal/ubuntu resolute/main s390x cpp-15-s390x-linux-gnu s390x 15.2.0-5ubuntu1 [10.2 MB] 371s Get:8 http://ftpmaster.internal/ubuntu resolute/main s390x cpp-15 s390x 15.2.0-5ubuntu1 [1024 B] 371s Get:9 http://ftpmaster.internal/ubuntu resolute/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 371s Get:10 http://ftpmaster.internal/ubuntu resolute/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 371s Get:11 http://ftpmaster.internal/ubuntu resolute/main s390x fontconfig-config s390x 2.15.0-2.3ubuntu1 [38.1 kB] 371s Get:12 http://ftpmaster.internal/ubuntu resolute/main s390x libcc1-0 s390x 15.2.0-5ubuntu1 [50.0 kB] 371s Get:13 http://ftpmaster.internal/ubuntu resolute/main s390x libgomp1 s390x 15.2.0-5ubuntu1 [154 kB] 371s Get:14 http://ftpmaster.internal/ubuntu resolute/main s390x libitm1 s390x 15.2.0-5ubuntu1 [30.9 kB] 371s Get:15 http://ftpmaster.internal/ubuntu resolute/main s390x libasan8 s390x 15.2.0-5ubuntu1 [2969 kB] 371s Get:16 http://ftpmaster.internal/ubuntu resolute/main s390x libubsan1 s390x 15.2.0-5ubuntu1 [1211 kB] 371s Get:17 http://ftpmaster.internal/ubuntu resolute/main s390x libgcc-15-dev s390x 15.2.0-5ubuntu1 [1045 kB] 371s Get:18 http://ftpmaster.internal/ubuntu resolute/main s390x gcc-15-s390x-linux-gnu s390x 15.2.0-5ubuntu1 [19.9 MB] 372s Get:19 http://ftpmaster.internal/ubuntu resolute/main s390x gcc-15 s390x 15.2.0-5ubuntu1 [512 kB] 372s Get:20 http://ftpmaster.internal/ubuntu resolute/main s390x libgfortran5 s390x 15.2.0-5ubuntu1 [629 kB] 372s Get:21 http://ftpmaster.internal/ubuntu resolute/main s390x libgfortran-15-dev s390x 15.2.0-5ubuntu1 [673 kB] 372s Get:22 http://ftpmaster.internal/ubuntu resolute/main s390x gfortran-15-s390x-linux-gnu s390x 15.2.0-5ubuntu1 [10.9 MB] 372s Get:23 http://ftpmaster.internal/ubuntu resolute/main s390x gfortran-15 s390x 15.2.0-5ubuntu1 [17.7 kB] 372s Get:24 http://ftpmaster.internal/ubuntu resolute/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 372s Get:25 http://ftpmaster.internal/ubuntu resolute/main s390x libblas3 s390x 3.12.1-6build1 [245 kB] 372s Get:26 http://ftpmaster.internal/ubuntu resolute/main s390x libfreetype6 s390x 2.13.3+dfsg-1build1 [430 kB] 372s Get:27 http://ftpmaster.internal/ubuntu resolute/main s390x libfontconfig1 s390x 2.15.0-2.3ubuntu1 [149 kB] 372s Get:28 http://ftpmaster.internal/ubuntu resolute/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 372s Get:29 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-render0 s390x 1.17.0-2build1 [16.9 kB] 372s Get:30 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-shm0 s390x 1.17.0-2build1 [5916 B] 372s Get:31 http://ftpmaster.internal/ubuntu resolute/main s390x libxrender1 s390x 1:0.9.12-1 [20.9 kB] 372s Get:32 http://ftpmaster.internal/ubuntu resolute/main s390x libcairo2 s390x 1.18.4-1build1 [580 kB] 372s Get:33 http://ftpmaster.internal/ubuntu resolute/main s390x libdeflate0 s390x 1.23-2 [46.0 kB] 372s Get:34 http://ftpmaster.internal/ubuntu resolute/universe s390x libdouble-conversion3 s390x 3.3.1-1build1 [43.5 kB] 372s Get:35 http://ftpmaster.internal/ubuntu resolute/main s390x libdrm-amdgpu1 s390x 2.4.125-1 [21.8 kB] 372s Get:36 http://ftpmaster.internal/ubuntu resolute/main s390x libevent-2.1-7t64 s390x 2.1.12-stable-10build1 [144 kB] 372s Get:37 http://ftpmaster.internal/ubuntu resolute/main s390x libevent-core-2.1-7t64 s390x 2.1.12-stable-10build1 [93.1 kB] 372s Get:38 http://ftpmaster.internal/ubuntu resolute/main s390x libevent-extra-2.1-7t64 s390x 2.1.12-stable-10build1 [63.2 kB] 372s Get:39 http://ftpmaster.internal/ubuntu resolute/main s390x libevent-pthreads-2.1-7t64 s390x 2.1.12-stable-10build1 [8060 B] 372s Get:40 http://ftpmaster.internal/ubuntu resolute/main s390x libevent-openssl-2.1-7t64 s390x 2.1.12-stable-10build1 [15.1 kB] 372s Get:41 http://ftpmaster.internal/ubuntu resolute/main s390x libevent-dev s390x 2.1.12-stable-10build1 [274 kB] 372s Get:42 http://ftpmaster.internal/ubuntu resolute/main s390x librdmacm1t64 s390x 56.1-1ubuntu1 [73.6 kB] 372s Get:43 http://ftpmaster.internal/ubuntu resolute/universe s390x libfabric1 s390x 2.1.0-1.1 [640 kB] 372s Get:44 http://ftpmaster.internal/ubuntu resolute/main s390x libfftw3-double3 s390x 3.3.10-2fakesync1build2 [512 kB] 372s Get:45 http://ftpmaster.internal/ubuntu resolute/main s390x libx11-xcb1 s390x 2:1.8.12-1build1 [7972 B] 372s Get:46 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-dri3-0 s390x 1.17.0-2build1 [7688 B] 372s Get:47 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-present0 s390x 1.17.0-2build1 [6346 B] 372s Get:48 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-randr0 s390x 1.17.0-2build1 [19.0 kB] 372s Get:49 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-sync1 s390x 1.17.0-2build1 [9530 B] 372s Get:50 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-xfixes0 s390x 1.17.0-2build1 [10.6 kB] 372s Get:51 http://ftpmaster.internal/ubuntu resolute/main s390x libxshmfence1 s390x 1.3.3-1 [5202 B] 373s Get:52 http://ftpmaster.internal/ubuntu resolute/main s390x mesa-libgallium s390x 25.2.3-1ubuntu1 [8319 kB] 373s Get:53 http://ftpmaster.internal/ubuntu resolute/main s390x libgbm1 s390x 25.2.3-1ubuntu1 [34.7 kB] 373s Get:54 http://ftpmaster.internal/ubuntu resolute/main s390x libvulkan1 s390x 1.4.321.0-1 [147 kB] 373s Get:55 http://ftpmaster.internal/ubuntu resolute/main s390x libgl1-mesa-dri s390x 25.2.3-1ubuntu1 [36.0 kB] 373s Get:56 http://ftpmaster.internal/ubuntu resolute/main s390x libglvnd0 s390x 1.7.0-1build2 [107 kB] 373s Get:57 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-glx0 s390x 1.17.0-2build1 [25.6 kB] 373s Get:58 http://ftpmaster.internal/ubuntu resolute/main s390x libxxf86vm1 s390x 1:1.1.4-1build4 [9630 B] 373s Get:59 http://ftpmaster.internal/ubuntu resolute/main s390x libglx-mesa0 s390x 25.2.3-1ubuntu1 [114 kB] 373s Get:60 http://ftpmaster.internal/ubuntu resolute/main s390x libglx0 s390x 1.7.0-1build2 [30.9 kB] 373s Get:61 http://ftpmaster.internal/ubuntu resolute/main s390x libgl1 s390x 1.7.0-1build2 [135 kB] 373s Get:62 http://ftpmaster.internal/ubuntu resolute/universe s390x libgl2ps1.4 s390x 1.4.2+dfsg1-2build1 [44.1 kB] 373s Get:63 http://ftpmaster.internal/ubuntu resolute/universe s390x libglew2.2 s390x 2.2.0-4build1 [195 kB] 373s Get:64 http://ftpmaster.internal/ubuntu resolute/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 373s Get:65 http://ftpmaster.internal/ubuntu resolute/universe s390x libhdf5-310 s390x 1.14.5+repack-3build1 [1477 kB] 373s Get:66 http://ftpmaster.internal/ubuntu resolute/universe s390x libhdf5-hl-310 s390x 1.14.5+repack-3build1 [61.1 kB] 373s Get:67 http://ftpmaster.internal/ubuntu resolute/universe s390x libhwloc15 s390x 2.12.2-1 [175 kB] 373s Get:68 http://ftpmaster.internal/ubuntu resolute/main s390x libjpeg-turbo8 s390x 2.1.5-4ubuntu2 [147 kB] 373s Get:69 http://ftpmaster.internal/ubuntu resolute/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 373s Get:70 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 373s Get:71 http://ftpmaster.internal/ubuntu resolute/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 373s Get:72 http://ftpmaster.internal/ubuntu resolute/main s390x libjsoncpp26 s390x 1.9.6-3 [80.8 kB] 373s Get:73 http://ftpmaster.internal/ubuntu resolute/universe s390x libkim-api2 s390x 2.3.0-1ubuntu1 [602 kB] 373s Get:74 http://ftpmaster.internal/ubuntu resolute/main s390x liblapack3 s390x 3.12.1-6build1 [2910 kB] 373s Get:75 http://ftpmaster.internal/ubuntu resolute/universe s390x libnetcdf22 s390x 1:4.9.3-1build1 [583 kB] 373s Get:76 http://ftpmaster.internal/ubuntu resolute/main s390x libpciaccess0 s390x 0.18.1-1ubuntu2 [19.1 kB] 373s Get:77 http://ftpmaster.internal/ubuntu resolute/main s390x libxnvctrl0 s390x 510.47.03-0ubuntu4 [12.7 kB] 373s Get:78 http://ftpmaster.internal/ubuntu resolute/main s390x ocl-icd-libopencl1 s390x 2.3.3-1 [44.9 kB] 373s Get:79 http://ftpmaster.internal/ubuntu resolute/universe s390x libhwloc-plugins s390x 2.12.2-1 [15.9 kB] 373s Get:80 http://ftpmaster.internal/ubuntu resolute/universe s390x libopenmpi40 s390x 5.0.8-8ubuntu1 [2907 kB] 373s Get:81 http://ftpmaster.internal/ubuntu resolute/universe s390x libpnetcdf6 s390x 1.14.0-2 [1172 kB] 373s Get:82 http://ftpmaster.internal/ubuntu resolute/universe s390x libvoro++1 s390x 0.5+revert-to-0.4.6+dfsg1-1 [110 kB] 373s Get:83 http://ftpmaster.internal/ubuntu resolute/main s390x libogg0 s390x 1.3.5-3build1 [24.4 kB] 373s Get:84 http://ftpmaster.internal/ubuntu resolute/main s390x libopengl0 s390x 1.7.0-1build2 [44.9 kB] 373s Get:85 http://ftpmaster.internal/ubuntu resolute/universe s390x proj-data all 9.6.0-1 [7955 kB] 374s Get:86 http://ftpmaster.internal/ubuntu resolute/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 374s Get:87 http://ftpmaster.internal/ubuntu resolute/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 374s Get:88 http://ftpmaster.internal/ubuntu resolute/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 374s Get:89 http://ftpmaster.internal/ubuntu resolute/main s390x libtiff6 s390x 4.7.0-3ubuntu3 [222 kB] 374s Get:90 http://ftpmaster.internal/ubuntu resolute/universe s390x libproj25 s390x 9.6.0-1 [1467 kB] 374s Get:91 http://ftpmaster.internal/ubuntu resolute/universe s390x libtbbbind-2-5 s390x 2022.1.0-1 [14.7 kB] 374s Get:92 http://ftpmaster.internal/ubuntu resolute/universe s390x libtbbmalloc2 s390x 2022.1.0-1 [58.4 kB] 374s Get:93 http://ftpmaster.internal/ubuntu resolute/universe s390x libtbb12 s390x 2022.1.0-1 [100 kB] 374s Get:94 http://ftpmaster.internal/ubuntu resolute/main s390x libtcl8.6 s390x 8.6.17+dfsg-1 [1034 kB] 374s Get:95 http://ftpmaster.internal/ubuntu resolute/main s390x libtheoradec1 s390x 1.2.0~alpha1+dfsg-6 [68.6 kB] 374s Get:96 http://ftpmaster.internal/ubuntu resolute/main s390x libtheoraenc1 s390x 1.2.0~alpha1+dfsg-6 [142 kB] 374s Get:97 http://ftpmaster.internal/ubuntu resolute/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 374s Get:98 http://ftpmaster.internal/ubuntu resolute/main s390x x11-common all 1:7.7+24ubuntu1 [22.4 kB] 374s Get:99 http://ftpmaster.internal/ubuntu resolute/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 374s Get:100 http://ftpmaster.internal/ubuntu resolute/main s390x libtk8.6 s390x 8.6.17-1 [828 kB] 374s Get:101 http://ftpmaster.internal/ubuntu resolute/universe s390x libvtk9.3 s390x 9.3.0+dfsg1-4ubuntu2 [27.1 MB] 375s Get:102 http://ftpmaster.internal/ubuntu resolute/universe s390x liblammps0t64 s390x 20250204+dfsg.1-2 [8532 kB] 376s Get:103 http://ftpmaster.internal/ubuntu resolute/universe s390x openmpi-common all 5.0.8-8ubuntu1 [108 kB] 376s Get:104 http://ftpmaster.internal/ubuntu resolute/main s390x libnl-3-dev s390x 3.7.0-2build1 [102 kB] 376s Get:105 http://ftpmaster.internal/ubuntu resolute/main s390x libnl-route-3-dev s390x 3.7.0-2build1 [213 kB] 376s Get:106 http://ftpmaster.internal/ubuntu resolute/main s390x libibverbs-dev s390x 56.1-1ubuntu1 [716 kB] 376s Get:107 http://ftpmaster.internal/ubuntu resolute/main s390x libnuma-dev s390x 2.0.19-1 [38.5 kB] 376s Get:108 http://ftpmaster.internal/ubuntu resolute/main s390x libltdl7 s390x 2.5.4-4build1 [43.9 kB] 376s Get:109 http://ftpmaster.internal/ubuntu resolute/main s390x libltdl-dev s390x 2.5.4-4build1 [173 kB] 376s Get:110 http://ftpmaster.internal/ubuntu resolute/universe s390x libhwloc-dev s390x 2.12.2-1 [273 kB] 376s Get:111 http://ftpmaster.internal/ubuntu resolute/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu2 [897 kB] 376s Get:112 http://ftpmaster.internal/ubuntu resolute/universe s390x openmpi-bin s390x 5.0.8-8ubuntu1 [199 kB] 376s Get:113 http://ftpmaster.internal/ubuntu resolute/universe s390x libopenmpi-dev s390x 5.0.8-8ubuntu1 [1162 kB] 376s Get:114 http://ftpmaster.internal/ubuntu resolute/universe s390x mpi-default-dev s390x 1.18 [3324 B] 376s Get:115 http://ftpmaster.internal/ubuntu resolute/universe s390x liblammps-dev s390x 20250204+dfsg.1-2 [114 kB] 376s Get:116 http://ftpmaster.internal/ubuntu resolute/universe s390x mpi-default-bin s390x 1.18 [2510 B] 376s Get:117 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-lammps s390x 20250204+dfsg.1-2 [75.3 kB] 377s Fetched 127 MB in 7s (17.4 MB/s) 377s Selecting previously unselected package m4. 377s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56857 files and directories currently installed.) 377s Preparing to unpack .../000-m4_1.4.19-8_s390x.deb ... 377s Unpacking m4 (1.4.19-8) ... 377s Selecting previously unselected package autoconf. 377s Preparing to unpack .../001-autoconf_2.72-3.1ubuntu1_all.deb ... 377s Unpacking autoconf (2.72-3.1ubuntu1) ... 377s Selecting previously unselected package autotools-dev. 377s Preparing to unpack .../002-autotools-dev_20240727.1_all.deb ... 377s Unpacking autotools-dev (20240727.1) ... 377s Selecting previously unselected package automake. 377s Preparing to unpack .../003-automake_1%3a1.17-4ubuntu1_all.deb ... 377s Unpacking automake (1:1.17-4ubuntu1) ... 377s Selecting previously unselected package libisl23:s390x. 377s Preparing to unpack .../004-libisl23_0.27-1_s390x.deb ... 377s Unpacking libisl23:s390x (0.27-1) ... 377s Selecting previously unselected package libmpc3:s390x. 377s Preparing to unpack .../005-libmpc3_1.3.1-1build3_s390x.deb ... 377s Unpacking libmpc3:s390x (1.3.1-1build3) ... 377s Selecting previously unselected package cpp-15-s390x-linux-gnu. 377s Preparing to unpack .../006-cpp-15-s390x-linux-gnu_15.2.0-5ubuntu1_s390x.deb ... 377s Unpacking cpp-15-s390x-linux-gnu (15.2.0-5ubuntu1) ... 377s Selecting previously unselected package cpp-15. 377s Preparing to unpack .../007-cpp-15_15.2.0-5ubuntu1_s390x.deb ... 377s Unpacking cpp-15 (15.2.0-5ubuntu1) ... 377s Selecting previously unselected package fonts-dejavu-mono. 377s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ... 377s Unpacking fonts-dejavu-mono (2.37-8) ... 377s Selecting previously unselected package fonts-dejavu-core. 377s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ... 377s Unpacking fonts-dejavu-core (2.37-8) ... 377s Selecting previously unselected package fontconfig-config. 377s Preparing to unpack .../010-fontconfig-config_2.15.0-2.3ubuntu1_s390x.deb ... 377s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 377s Selecting previously unselected package libcc1-0:s390x. 377s Preparing to unpack .../011-libcc1-0_15.2.0-5ubuntu1_s390x.deb ... 377s Unpacking libcc1-0:s390x (15.2.0-5ubuntu1) ... 377s Selecting previously unselected package libgomp1:s390x. 377s Preparing to unpack .../012-libgomp1_15.2.0-5ubuntu1_s390x.deb ... 377s Unpacking libgomp1:s390x (15.2.0-5ubuntu1) ... 377s Selecting previously unselected package libitm1:s390x. 377s Preparing to unpack .../013-libitm1_15.2.0-5ubuntu1_s390x.deb ... 377s Unpacking libitm1:s390x (15.2.0-5ubuntu1) ... 377s Selecting previously unselected package libasan8:s390x. 377s Preparing to unpack .../014-libasan8_15.2.0-5ubuntu1_s390x.deb ... 377s Unpacking libasan8:s390x (15.2.0-5ubuntu1) ... 377s Selecting previously unselected package libubsan1:s390x. 377s Preparing to unpack .../015-libubsan1_15.2.0-5ubuntu1_s390x.deb ... 377s Unpacking libubsan1:s390x (15.2.0-5ubuntu1) ... 377s Selecting previously unselected package libgcc-15-dev:s390x. 377s Preparing to unpack .../016-libgcc-15-dev_15.2.0-5ubuntu1_s390x.deb ... 377s Unpacking libgcc-15-dev:s390x (15.2.0-5ubuntu1) ... 377s Selecting previously unselected package gcc-15-s390x-linux-gnu. 377s Preparing to unpack .../017-gcc-15-s390x-linux-gnu_15.2.0-5ubuntu1_s390x.deb ... 377s Unpacking gcc-15-s390x-linux-gnu (15.2.0-5ubuntu1) ... 378s Selecting previously unselected package gcc-15. 378s Preparing to unpack .../018-gcc-15_15.2.0-5ubuntu1_s390x.deb ... 378s Unpacking gcc-15 (15.2.0-5ubuntu1) ... 378s Selecting previously unselected package libgfortran5:s390x. 378s Preparing to unpack .../019-libgfortran5_15.2.0-5ubuntu1_s390x.deb ... 378s Unpacking libgfortran5:s390x (15.2.0-5ubuntu1) ... 378s Selecting previously unselected package libgfortran-15-dev:s390x. 378s Preparing to unpack .../020-libgfortran-15-dev_15.2.0-5ubuntu1_s390x.deb ... 378s Unpacking libgfortran-15-dev:s390x (15.2.0-5ubuntu1) ... 378s Selecting previously unselected package gfortran-15-s390x-linux-gnu. 378s Preparing to unpack .../021-gfortran-15-s390x-linux-gnu_15.2.0-5ubuntu1_s390x.deb ... 378s Unpacking gfortran-15-s390x-linux-gnu (15.2.0-5ubuntu1) ... 378s Selecting previously unselected package gfortran-15. 378s Preparing to unpack .../022-gfortran-15_15.2.0-5ubuntu1_s390x.deb ... 378s Unpacking gfortran-15 (15.2.0-5ubuntu1) ... 378s Selecting previously unselected package libaec0:s390x. 378s Preparing to unpack .../023-libaec0_1.1.3-1_s390x.deb ... 378s Unpacking libaec0:s390x (1.1.3-1) ... 378s Selecting previously unselected package libblas3:s390x. 378s Preparing to unpack .../024-libblas3_3.12.1-6build1_s390x.deb ... 378s Unpacking libblas3:s390x (3.12.1-6build1) ... 378s Selecting previously unselected package libfreetype6:s390x. 378s Preparing to unpack .../025-libfreetype6_2.13.3+dfsg-1build1_s390x.deb ... 378s Unpacking libfreetype6:s390x (2.13.3+dfsg-1build1) ... 378s Selecting previously unselected package libfontconfig1:s390x. 378s Preparing to unpack .../026-libfontconfig1_2.15.0-2.3ubuntu1_s390x.deb ... 378s Unpacking libfontconfig1:s390x (2.15.0-2.3ubuntu1) ... 378s Selecting previously unselected package libpixman-1-0:s390x. 378s Preparing to unpack .../027-libpixman-1-0_0.44.0-3_s390x.deb ... 378s Unpacking libpixman-1-0:s390x (0.44.0-3) ... 378s Selecting previously unselected package libxcb-render0:s390x. 378s Preparing to unpack .../028-libxcb-render0_1.17.0-2build1_s390x.deb ... 378s Unpacking libxcb-render0:s390x (1.17.0-2build1) ... 378s Selecting previously unselected package libxcb-shm0:s390x. 378s Preparing to unpack .../029-libxcb-shm0_1.17.0-2build1_s390x.deb ... 378s Unpacking libxcb-shm0:s390x (1.17.0-2build1) ... 378s Selecting previously unselected package libxrender1:s390x. 378s Preparing to unpack .../030-libxrender1_1%3a0.9.12-1_s390x.deb ... 378s Unpacking libxrender1:s390x (1:0.9.12-1) ... 378s Selecting previously unselected package libcairo2:s390x. 378s Preparing to unpack .../031-libcairo2_1.18.4-1build1_s390x.deb ... 378s Unpacking libcairo2:s390x (1.18.4-1build1) ... 378s Selecting previously unselected package libdeflate0:s390x. 378s Preparing to unpack .../032-libdeflate0_1.23-2_s390x.deb ... 378s Unpacking libdeflate0:s390x (1.23-2) ... 378s Selecting previously unselected package libdouble-conversion3:s390x. 378s Preparing to unpack .../033-libdouble-conversion3_3.3.1-1build1_s390x.deb ... 378s Unpacking libdouble-conversion3:s390x (3.3.1-1build1) ... 378s Selecting previously unselected package libdrm-amdgpu1:s390x. 378s Preparing to unpack .../034-libdrm-amdgpu1_2.4.125-1_s390x.deb ... 378s Unpacking libdrm-amdgpu1:s390x (2.4.125-1) ... 378s Selecting previously unselected package libevent-2.1-7t64:s390x. 378s Preparing to unpack .../035-libevent-2.1-7t64_2.1.12-stable-10build1_s390x.deb ... 378s Unpacking libevent-2.1-7t64:s390x (2.1.12-stable-10build1) ... 378s Selecting previously unselected package libevent-core-2.1-7t64:s390x. 378s Preparing to unpack .../036-libevent-core-2.1-7t64_2.1.12-stable-10build1_s390x.deb ... 378s Unpacking libevent-core-2.1-7t64:s390x (2.1.12-stable-10build1) ... 378s Selecting previously unselected package libevent-extra-2.1-7t64:s390x. 378s Preparing to unpack .../037-libevent-extra-2.1-7t64_2.1.12-stable-10build1_s390x.deb ... 378s Unpacking libevent-extra-2.1-7t64:s390x (2.1.12-stable-10build1) ... 378s Selecting previously unselected package libevent-pthreads-2.1-7t64:s390x. 378s Preparing to unpack .../038-libevent-pthreads-2.1-7t64_2.1.12-stable-10build1_s390x.deb ... 378s Unpacking libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-10build1) ... 378s Selecting previously unselected package libevent-openssl-2.1-7t64:s390x. 378s Preparing to unpack .../039-libevent-openssl-2.1-7t64_2.1.12-stable-10build1_s390x.deb ... 378s Unpacking libevent-openssl-2.1-7t64:s390x (2.1.12-stable-10build1) ... 378s Selecting previously unselected package libevent-dev. 378s Preparing to unpack .../040-libevent-dev_2.1.12-stable-10build1_s390x.deb ... 378s Unpacking libevent-dev (2.1.12-stable-10build1) ... 378s Selecting previously unselected package librdmacm1t64:s390x. 378s Preparing to unpack .../041-librdmacm1t64_56.1-1ubuntu1_s390x.deb ... 378s Unpacking librdmacm1t64:s390x (56.1-1ubuntu1) ... 378s Selecting previously unselected package libfabric1:s390x. 378s Preparing to unpack .../042-libfabric1_2.1.0-1.1_s390x.deb ... 378s Unpacking libfabric1:s390x (2.1.0-1.1) ... 378s Selecting previously unselected package libfftw3-double3:s390x. 378s Preparing to unpack .../043-libfftw3-double3_3.3.10-2fakesync1build2_s390x.deb ... 378s Unpacking libfftw3-double3:s390x (3.3.10-2fakesync1build2) ... 378s Selecting previously unselected package libx11-xcb1:s390x. 378s Preparing to unpack .../044-libx11-xcb1_2%3a1.8.12-1build1_s390x.deb ... 378s Unpacking libx11-xcb1:s390x (2:1.8.12-1build1) ... 378s Selecting previously unselected package libxcb-dri3-0:s390x. 378s Preparing to unpack .../045-libxcb-dri3-0_1.17.0-2build1_s390x.deb ... 378s Unpacking libxcb-dri3-0:s390x (1.17.0-2build1) ... 378s Selecting previously unselected package libxcb-present0:s390x. 378s Preparing to unpack .../046-libxcb-present0_1.17.0-2build1_s390x.deb ... 378s Unpacking libxcb-present0:s390x (1.17.0-2build1) ... 378s Selecting previously unselected package libxcb-randr0:s390x. 378s Preparing to unpack .../047-libxcb-randr0_1.17.0-2build1_s390x.deb ... 378s Unpacking libxcb-randr0:s390x (1.17.0-2build1) ... 378s Selecting previously unselected package libxcb-sync1:s390x. 378s Preparing to unpack .../048-libxcb-sync1_1.17.0-2build1_s390x.deb ... 378s Unpacking libxcb-sync1:s390x (1.17.0-2build1) ... 378s Selecting previously unselected package libxcb-xfixes0:s390x. 378s Preparing to unpack .../049-libxcb-xfixes0_1.17.0-2build1_s390x.deb ... 378s Unpacking libxcb-xfixes0:s390x (1.17.0-2build1) ... 378s Selecting previously unselected package libxshmfence1:s390x. 378s Preparing to unpack .../050-libxshmfence1_1.3.3-1_s390x.deb ... 378s Unpacking libxshmfence1:s390x (1.3.3-1) ... 378s Selecting previously unselected package mesa-libgallium:s390x. 378s Preparing to unpack .../051-mesa-libgallium_25.2.3-1ubuntu1_s390x.deb ... 378s Unpacking mesa-libgallium:s390x (25.2.3-1ubuntu1) ... 378s Selecting previously unselected package libgbm1:s390x. 378s Preparing to unpack .../052-libgbm1_25.2.3-1ubuntu1_s390x.deb ... 378s Unpacking libgbm1:s390x (25.2.3-1ubuntu1) ... 378s Selecting previously unselected package libvulkan1:s390x. 378s Preparing to unpack .../053-libvulkan1_1.4.321.0-1_s390x.deb ... 378s Unpacking libvulkan1:s390x (1.4.321.0-1) ... 378s Selecting previously unselected package libgl1-mesa-dri:s390x. 378s Preparing to unpack .../054-libgl1-mesa-dri_25.2.3-1ubuntu1_s390x.deb ... 378s Unpacking libgl1-mesa-dri:s390x (25.2.3-1ubuntu1) ... 378s Selecting previously unselected package libglvnd0:s390x. 378s Preparing to unpack .../055-libglvnd0_1.7.0-1build2_s390x.deb ... 378s Unpacking libglvnd0:s390x (1.7.0-1build2) ... 378s Selecting previously unselected package libxcb-glx0:s390x. 378s Preparing to unpack .../056-libxcb-glx0_1.17.0-2build1_s390x.deb ... 378s Unpacking libxcb-glx0:s390x (1.17.0-2build1) ... 378s Selecting previously unselected package libxxf86vm1:s390x. 378s Preparing to unpack .../057-libxxf86vm1_1%3a1.1.4-1build4_s390x.deb ... 378s Unpacking libxxf86vm1:s390x (1:1.1.4-1build4) ... 378s Selecting previously unselected package libglx-mesa0:s390x. 378s Preparing to unpack .../058-libglx-mesa0_25.2.3-1ubuntu1_s390x.deb ... 378s Unpacking libglx-mesa0:s390x (25.2.3-1ubuntu1) ... 378s Selecting previously unselected package libglx0:s390x. 378s Preparing to unpack .../059-libglx0_1.7.0-1build2_s390x.deb ... 378s Unpacking libglx0:s390x (1.7.0-1build2) ... 378s Selecting previously unselected package libgl1:s390x. 378s Preparing to unpack .../060-libgl1_1.7.0-1build2_s390x.deb ... 378s Unpacking libgl1:s390x (1.7.0-1build2) ... 378s Selecting previously unselected package libgl2ps1.4. 378s Preparing to unpack .../061-libgl2ps1.4_1.4.2+dfsg1-2build1_s390x.deb ... 378s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 378s Selecting previously unselected package libglew2.2:s390x. 378s Preparing to unpack .../062-libglew2.2_2.2.0-4build1_s390x.deb ... 378s Unpacking libglew2.2:s390x (2.2.0-4build1) ... 378s Selecting previously unselected package libsz2:s390x. 378s Preparing to unpack .../063-libsz2_1.1.3-1_s390x.deb ... 378s Unpacking libsz2:s390x (1.1.3-1) ... 378s Selecting previously unselected package libhdf5-310:s390x. 378s Preparing to unpack .../064-libhdf5-310_1.14.5+repack-3build1_s390x.deb ... 378s Unpacking libhdf5-310:s390x (1.14.5+repack-3build1) ... 379s Selecting previously unselected package libhdf5-hl-310:s390x. 379s Preparing to unpack .../065-libhdf5-hl-310_1.14.5+repack-3build1_s390x.deb ... 379s Unpacking libhdf5-hl-310:s390x (1.14.5+repack-3build1) ... 379s Selecting previously unselected package libhwloc15:s390x. 379s Preparing to unpack .../066-libhwloc15_2.12.2-1_s390x.deb ... 379s Unpacking libhwloc15:s390x (2.12.2-1) ... 379s Selecting previously unselected package libjpeg-turbo8:s390x. 379s Preparing to unpack .../067-libjpeg-turbo8_2.1.5-4ubuntu2_s390x.deb ... 379s Unpacking libjpeg-turbo8:s390x (2.1.5-4ubuntu2) ... 379s Selecting previously unselected package libjpeg8:s390x. 379s Preparing to unpack .../068-libjpeg8_8c-2ubuntu11_s390x.deb ... 379s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 379s Selecting previously unselected package libjs-jquery. 379s Preparing to unpack .../069-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 379s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 379s Selecting previously unselected package libjs-jquery-ui. 379s Preparing to unpack .../070-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 379s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 379s Selecting previously unselected package libjsoncpp26:s390x. 379s Preparing to unpack .../071-libjsoncpp26_1.9.6-3_s390x.deb ... 379s Unpacking libjsoncpp26:s390x (1.9.6-3) ... 379s Selecting previously unselected package libkim-api2:s390x. 379s Preparing to unpack .../072-libkim-api2_2.3.0-1ubuntu1_s390x.deb ... 379s Unpacking libkim-api2:s390x (2.3.0-1ubuntu1) ... 379s Selecting previously unselected package liblapack3:s390x. 379s Preparing to unpack .../073-liblapack3_3.12.1-6build1_s390x.deb ... 379s Unpacking liblapack3:s390x (3.12.1-6build1) ... 379s Selecting previously unselected package libnetcdf22:s390x. 379s Preparing to unpack .../074-libnetcdf22_1%3a4.9.3-1build1_s390x.deb ... 379s Unpacking libnetcdf22:s390x (1:4.9.3-1build1) ... 379s Selecting previously unselected package libpciaccess0:s390x. 379s Preparing to unpack .../075-libpciaccess0_0.18.1-1ubuntu2_s390x.deb ... 379s Unpacking libpciaccess0:s390x (0.18.1-1ubuntu2) ... 379s Selecting previously unselected package libxnvctrl0:s390x. 379s Preparing to unpack .../076-libxnvctrl0_510.47.03-0ubuntu4_s390x.deb ... 379s Unpacking libxnvctrl0:s390x (510.47.03-0ubuntu4) ... 379s Selecting previously unselected package ocl-icd-libopencl1:s390x. 379s Preparing to unpack .../077-ocl-icd-libopencl1_2.3.3-1_s390x.deb ... 379s Unpacking ocl-icd-libopencl1:s390x (2.3.3-1) ... 379s Selecting previously unselected package libhwloc-plugins:s390x. 379s Preparing to unpack .../078-libhwloc-plugins_2.12.2-1_s390x.deb ... 379s Unpacking libhwloc-plugins:s390x (2.12.2-1) ... 379s Selecting previously unselected package libopenmpi40:s390x. 379s Preparing to unpack .../079-libopenmpi40_5.0.8-8ubuntu1_s390x.deb ... 379s Unpacking libopenmpi40:s390x (5.0.8-8ubuntu1) ... 379s Selecting previously unselected package libpnetcdf6:s390x. 379s Preparing to unpack .../080-libpnetcdf6_1.14.0-2_s390x.deb ... 379s Unpacking libpnetcdf6:s390x (1.14.0-2) ... 379s Selecting previously unselected package libvoro++1. 379s Preparing to unpack .../081-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_s390x.deb ... 379s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 379s Selecting previously unselected package libogg0:s390x. 379s Preparing to unpack .../082-libogg0_1.3.5-3build1_s390x.deb ... 379s Unpacking libogg0:s390x (1.3.5-3build1) ... 379s Selecting previously unselected package libopengl0:s390x. 379s Preparing to unpack .../083-libopengl0_1.7.0-1build2_s390x.deb ... 379s Unpacking libopengl0:s390x (1.7.0-1build2) ... 379s Selecting previously unselected package proj-data. 379s Preparing to unpack .../084-proj-data_9.6.0-1_all.deb ... 379s Unpacking proj-data (9.6.0-1) ... 379s Selecting previously unselected package libjbig0:s390x. 379s Preparing to unpack .../085-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 379s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 379s Selecting previously unselected package libsharpyuv0:s390x. 379s Preparing to unpack .../086-libsharpyuv0_1.5.0-0.1_s390x.deb ... 379s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ... 379s Selecting previously unselected package libwebp7:s390x. 379s Preparing to unpack .../087-libwebp7_1.5.0-0.1_s390x.deb ... 379s Unpacking libwebp7:s390x (1.5.0-0.1) ... 379s Selecting previously unselected package libtiff6:s390x. 379s Preparing to unpack .../088-libtiff6_4.7.0-3ubuntu3_s390x.deb ... 379s Unpacking libtiff6:s390x (4.7.0-3ubuntu3) ... 379s Selecting previously unselected package libproj25:s390x. 379s Preparing to unpack .../089-libproj25_9.6.0-1_s390x.deb ... 379s Unpacking libproj25:s390x (9.6.0-1) ... 379s Selecting previously unselected package libtbbbind-2-5:s390x. 379s Preparing to unpack .../090-libtbbbind-2-5_2022.1.0-1_s390x.deb ... 379s Unpacking libtbbbind-2-5:s390x (2022.1.0-1) ... 379s Selecting previously unselected package libtbbmalloc2:s390x. 379s Preparing to unpack .../091-libtbbmalloc2_2022.1.0-1_s390x.deb ... 379s Unpacking libtbbmalloc2:s390x (2022.1.0-1) ... 379s Selecting previously unselected package libtbb12:s390x. 379s Preparing to unpack .../092-libtbb12_2022.1.0-1_s390x.deb ... 379s Unpacking libtbb12:s390x (2022.1.0-1) ... 379s Selecting previously unselected package libtcl8.6:s390x. 379s Preparing to unpack .../093-libtcl8.6_8.6.17+dfsg-1_s390x.deb ... 379s Unpacking libtcl8.6:s390x (8.6.17+dfsg-1) ... 379s Selecting previously unselected package libtheoradec1:s390x. 379s Preparing to unpack .../094-libtheoradec1_1.2.0~alpha1+dfsg-6_s390x.deb ... 379s Unpacking libtheoradec1:s390x (1.2.0~alpha1+dfsg-6) ... 379s Selecting previously unselected package libtheoraenc1:s390x. 379s Preparing to unpack .../095-libtheoraenc1_1.2.0~alpha1+dfsg-6_s390x.deb ... 379s Unpacking libtheoraenc1:s390x (1.2.0~alpha1+dfsg-6) ... 379s Selecting previously unselected package libxft2:s390x. 379s Preparing to unpack .../096-libxft2_2.3.6-1build1_s390x.deb ... 379s Unpacking libxft2:s390x (2.3.6-1build1) ... 379s Selecting previously unselected package x11-common. 379s Preparing to unpack .../097-x11-common_1%3a7.7+24ubuntu1_all.deb ... 379s Unpacking x11-common (1:7.7+24ubuntu1) ... 379s Selecting previously unselected package libxss1:s390x. 379s Preparing to unpack .../098-libxss1_1%3a1.2.3-1build3_s390x.deb ... 379s Unpacking libxss1:s390x (1:1.2.3-1build3) ... 379s Selecting previously unselected package libtk8.6:s390x. 379s Preparing to unpack .../099-libtk8.6_8.6.17-1_s390x.deb ... 379s Unpacking libtk8.6:s390x (8.6.17-1) ... 379s Selecting previously unselected package libvtk9.3:s390x. 379s Preparing to unpack .../100-libvtk9.3_9.3.0+dfsg1-4ubuntu2_s390x.deb ... 379s Unpacking libvtk9.3:s390x (9.3.0+dfsg1-4ubuntu2) ... 381s Selecting previously unselected package liblammps0t64:s390x. 381s Preparing to unpack .../101-liblammps0t64_20250204+dfsg.1-2_s390x.deb ... 381s Unpacking liblammps0t64:s390x (20250204+dfsg.1-2) ... 381s Selecting previously unselected package openmpi-common. 381s Preparing to unpack .../102-openmpi-common_5.0.8-8ubuntu1_all.deb ... 381s Unpacking openmpi-common (5.0.8-8ubuntu1) ... 381s Selecting previously unselected package libnl-3-dev:s390x. 381s Preparing to unpack .../103-libnl-3-dev_3.7.0-2build1_s390x.deb ... 381s Unpacking libnl-3-dev:s390x (3.7.0-2build1) ... 381s Selecting previously unselected package libnl-route-3-dev:s390x. 381s Preparing to unpack .../104-libnl-route-3-dev_3.7.0-2build1_s390x.deb ... 381s Unpacking libnl-route-3-dev:s390x (3.7.0-2build1) ... 381s Selecting previously unselected package libibverbs-dev:s390x. 381s Preparing to unpack .../105-libibverbs-dev_56.1-1ubuntu1_s390x.deb ... 381s Unpacking libibverbs-dev:s390x (56.1-1ubuntu1) ... 381s Selecting previously unselected package libnuma-dev:s390x. 381s Preparing to unpack .../106-libnuma-dev_2.0.19-1_s390x.deb ... 381s Unpacking libnuma-dev:s390x (2.0.19-1) ... 381s Selecting previously unselected package libltdl7:s390x. 381s Preparing to unpack .../107-libltdl7_2.5.4-4build1_s390x.deb ... 381s Unpacking libltdl7:s390x (2.5.4-4build1) ... 381s Selecting previously unselected package libltdl-dev:s390x. 381s Preparing to unpack .../108-libltdl-dev_2.5.4-4build1_s390x.deb ... 381s Unpacking libltdl-dev:s390x (2.5.4-4build1) ... 381s Selecting previously unselected package libhwloc-dev:s390x. 381s Preparing to unpack .../109-libhwloc-dev_2.12.2-1_s390x.deb ... 381s Unpacking libhwloc-dev:s390x (2.12.2-1) ... 381s Selecting previously unselected package zlib1g-dev:s390x. 381s Preparing to unpack .../110-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_s390x.deb ... 381s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 381s Selecting previously unselected package openmpi-bin. 381s Preparing to unpack .../111-openmpi-bin_5.0.8-8ubuntu1_s390x.deb ... 381s Unpacking openmpi-bin (5.0.8-8ubuntu1) ... 381s Selecting previously unselected package libopenmpi-dev:s390x. 381s Preparing to unpack .../112-libopenmpi-dev_5.0.8-8ubuntu1_s390x.deb ... 381s Unpacking libopenmpi-dev:s390x (5.0.8-8ubuntu1) ... 381s Selecting previously unselected package mpi-default-dev. 381s Preparing to unpack .../113-mpi-default-dev_1.18_s390x.deb ... 381s Unpacking mpi-default-dev (1.18) ... 381s Selecting previously unselected package liblammps-dev. 381s Preparing to unpack .../114-liblammps-dev_20250204+dfsg.1-2_s390x.deb ... 381s Unpacking liblammps-dev (20250204+dfsg.1-2) ... 381s Selecting previously unselected package mpi-default-bin. 381s Preparing to unpack .../115-mpi-default-bin_1.18_s390x.deb ... 381s Unpacking mpi-default-bin (1.18) ... 381s Selecting previously unselected package python3-lammps. 381s Preparing to unpack .../116-python3-lammps_20250204+dfsg.1-2_s390x.deb ... 381s Unpacking python3-lammps (20250204+dfsg.1-2) ... 381s Setting up libxcb-dri3-0:s390x (1.17.0-2build1) ... 381s Setting up libtbbmalloc2:s390x (2022.1.0-1) ... 381s Setting up libpixman-1-0:s390x (0.44.0-3) ... 381s Setting up libsharpyuv0:s390x (1.5.0-0.1) ... 381s Setting up libx11-xcb1:s390x (2:1.8.12-1build1) ... 381s Setting up libpciaccess0:s390x (0.18.1-1ubuntu2) ... 381s Setting up libdouble-conversion3:s390x (3.3.1-1build1) ... 381s Setting up libxcb-xfixes0:s390x (1.17.0-2build1) ... 381s Setting up libogg0:s390x (1.3.5-3build1) ... 381s Setting up proj-data (9.6.0-1) ... 381s Setting up libxrender1:s390x (1:0.9.12-1) ... 381s Setting up libxcb-render0:s390x (1.17.0-2build1) ... 381s Setting up libglvnd0:s390x (1.7.0-1build2) ... 381s Setting up libxcb-glx0:s390x (1.17.0-2build1) ... 381s Setting up x11-common (1:7.7+24ubuntu1) ... 381s Setting up libdeflate0:s390x (1.23-2) ... 381s Setting up m4 (1.4.19-8) ... 381s Setting up libevent-2.1-7t64:s390x (2.1.12-stable-10build1) ... 381s Setting up libxcb-shm0:s390x (1.17.0-2build1) ... 381s Setting up libgomp1:s390x (15.2.0-5ubuntu1) ... 381s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 381s Setting up libaec0:s390x (1.1.3-1) ... 381s Setting up libopengl0:s390x (1.7.0-1build2) ... 381s Setting up libxxf86vm1:s390x (1:1.1.4-1build4) ... 381s Setting up libnuma-dev:s390x (2.0.19-1) ... 381s Setting up libxnvctrl0:s390x (510.47.03-0ubuntu4) ... 381s Setting up libxcb-present0:s390x (1.17.0-2build1) ... 381s Setting up libtheoraenc1:s390x (1.2.0~alpha1+dfsg-6) ... 381s Setting up autotools-dev (20240727.1) ... 381s Setting up libblas3:s390x (3.12.1-6build1) ... 381s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 381s Setting up libfreetype6:s390x (2.13.3+dfsg-1build1) ... 381s Setting up libxcb-sync1:s390x (1.17.0-2build1) ... 381s 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(2022.1.0-1) ... 381s Setting up libibverbs-dev:s390x (56.1-1ubuntu1) ... 381s Setting up libcairo2:s390x (1.18.4-1build1) ... 381s Setting up libgl1:s390x (1.7.0-1build2) ... 381s Setting up libtheoradec1:s390x (1.2.0~alpha1+dfsg-6) ... 381s Setting up libevent-dev (2.1.12-stable-10build1) ... 381s Setting up libglew2.2:s390x (2.2.0-4build1) ... 381s Setting up cpp-15 (15.2.0-5ubuntu1) ... 381s Setting up openmpi-bin (5.0.8-8ubuntu1) ... 381s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 381s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 381s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 381s Setting up mpi-default-bin (1.18) ... 381s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 381s Setting up gcc-15 (15.2.0-5ubuntu1) ... 381s Setting up libvtk9.3:s390x (9.3.0+dfsg1-4ubuntu2) ... 381s Setting up gfortran-15 (15.2.0-5ubuntu1) ... 381s Setting up liblammps0t64:s390x (20250204+dfsg.1-2) ... 381s Setting up libopenmpi-dev:s390x (5.0.8-8ubuntu1) ... 381s update-alternatives: using /usr/lib/s390x-linux-gnu/openmpi/include to provide /usr/include/s390x-linux-gnu/mpi (mpi-s390x-linux-gnu) in auto mode 381s Setting up mpi-default-dev (1.18) ... 381s Setting up liblammps-dev (20250204+dfsg.1-2) ... 381s Setting up python3-lammps (20250204+dfsg.1-2) ... 381s Processing triggers for man-db (2.13.1-1) ... 382s Processing triggers for install-info (7.1.1-1ubuntu1) ... 382s Processing triggers for libc-bin (2.42-0ubuntu3) ... 545s autopkgtest [01:10:54]: test command1: cd python/examples; python3 demo.py 545s autopkgtest [01:10:54]: test command1: [----------------------- 545s LAMMPS (4 Feb 2025) 546s 546s Python output: 546s Natoms, mass, x[0][0] coord = 4000 1.0 0.2727243714666721 546s Temperature from compute = 0.750609109548371 546s Energy from equal-style variable = -5.748192616533703 546s Velocity component from atom-style variable = -0.008231833025308041 546s Volume from get_thermo = 4738.213693437576 546s Natoms from get_natoms = 4000 546s Global coords from gather_atoms = 0.2727243714666721 0.1442606170751015 0.02741951954247279 546s Changed x[0][0] via scatter_atoms = 1.272724371466672 546s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 546s using 1 OpenMP thread(s) per MPI task 546s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 546s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 546s 1 by 1 by 1 MPI processor grid 546s Created 4000 atoms 546s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 546s create_atoms CPU = 0.001 seconds 546s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 546s Neighbor list info ... 546s update: every = 20 steps, delay = 0 steps, check = no 546s max neighbors/atom: 2000, page size: 100000 546s master list distance cutoff = 2.8 546s ghost atom cutoff = 2.8 546s binsize = 1.4, bins = 12 12 12 546s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 546s (1) pair lj/cut, perpetual 546s attributes: half, newton on 546s pair build: half/bin/atomonly/newton 546s stencil: half/bin/3d 546s bin: standard 546s Setting up Verlet run ... 546s Unit style : lj 546s Current step : 0 546s Time step : 0.005 546s Per MPI rank memory allocation (min/avg/max) = 3.763 | 3.763 | 3.763 Mbytes 546s Step Temp E_pair E_mol TotEng Press 546s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 546s 100 0.75060911 -5.7481926 0 -4.6225604 0.24772341 546s Loop time of 0.228025 on 1 procs for 100 steps with 4000 atoms 546s 546s Performance: 189453.096 tau/day, 438.549 timesteps/s, 1.754 Matom-step/s 546s 95.7% CPU use with 1 MPI tasks x 1 OpenMP threads 546s 546s MPI task timing breakdown: 546s Section | min time | avg time | max time |%varavg| %total 546s --------------------------------------------------------------- 546s Pair | 0.19168 | 0.19168 | 0.19168 | 0.0 | 84.06 546s Neigh | 0.029269 | 0.029269 | 0.029269 | 0.0 | 12.84 546s Comm | 0.0031229 | 0.0031229 | 0.0031229 | 0.0 | 1.37 546s Output | 4.9899e-05 | 4.9899e-05 | 4.9899e-05 | 0.0 | 0.02 546s Modify | 0.0032287 | 0.0032287 | 0.0032287 | 0.0 | 1.42 546s Other | | 0.0006788 | | | 0.30 546s 546s Nlocal: 4000 ave 4000 max 4000 min 546s Histogram: 1 0 0 0 0 0 0 0 0 0 546s Nghost: 5770 ave 5770 max 5770 min 546s Histogram: 1 0 0 0 0 0 0 0 0 0 546s Neighs: 150293 ave 150293 max 150293 min 546s Histogram: 1 0 0 0 0 0 0 0 0 0 546s 546s Total # of neighbors = 150293 546s Ave neighs/atom = 37.57325 546s Neighbor list builds = 5 546s Dangerous builds not checked 546s Total wall time: 0:00:00 546s autopkgtest [01:10:55]: test command1: -----------------------] 547s autopkgtest [01:10:56]: test command1: - - - - - - - - - - results - - - - - - - - - - 547s command1 PASS 547s autopkgtest [01:10:56]: @@@@@@@@@@@@@@@@@@@@ summary 547s crack PASS 547s dipole PASS 547s ellipse PASS 547s flow PASS 547s friction PASS 547s hugo PASS 547s command1 PASS