0s autopkgtest [18:56:16]: starting date and time: 2025-10-18 18:56:16+0000 0s autopkgtest [18:56:16]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [18:56:16]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.gijl7mdg/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.13.7-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-15.secgroup --name adt-resolute-s390x-lammps-20251018-185616-juju-7f2275-prod-proposed-migration-environment-20-596993f6-7173-464d-94da-bf75e3142e4e --image adt/ubuntu-resolute-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-s390x-lammps-20251018-185616-juju-7f2275-prod-proposed-migration-environment-20-596993f6-7173-464d-94da-bf75e3142e4e from image adt/ubuntu-resolute-s390x-server-20251018.img (UUID c47ab411-f9be-46ce-b861-20d934d06dba)... 44s autopkgtest [18:57:00]: testbed dpkg architecture: s390x 45s autopkgtest [18:57:01]: testbed apt version: 3.1.6ubuntu2 45s autopkgtest [18:57:01]: @@@@@@@@@@@@@@@@@@@@ test bed setup 45s autopkgtest [18:57:01]: testbed release detected to be: None 46s autopkgtest [18:57:02]: updating testbed package index (apt update) 46s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 46s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 47s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 47s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 47s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [50.7 kB] 47s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [456 kB] 47s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [16.7 kB] 47s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 47s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x Packages [92.8 kB] 47s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted s390x Packages [940 B] 47s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe s390x Packages [314 kB] 47s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse s390x Packages [4660 B] 47s Fetched 1023 kB in 1s (919 kB/s) 48s Reading package lists... 48s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 48s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 49s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 49s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 49s Reading package lists... 49s Reading package lists... 49s Building dependency tree... 49s Reading state information... 49s Calculating upgrade... 50s The following packages will be upgraded: 50s apt gir1.2-girepository-2.0 libapt-pkg7.0 libgirepository-1.0-1 50s libpython3-stdlib lto-disabled-list python3 python3-minimal 50s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 50s Need to get 2763 kB of archives. 50s After this operation, 14.3 kB of additional disk space will be used. 50s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x python3-minimal s390x 3.13.7-2 [27.8 kB] 50s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x python3 s390x 3.13.7-2 [23.9 kB] 50s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x libpython3-stdlib s390x 3.13.7-2 [10.6 kB] 50s Get:4 http://ftpmaster.internal/ubuntu resolute/main s390x libapt-pkg7.0 s390x 3.1.8ubuntu1 [1144 kB] 50s Get:5 http://ftpmaster.internal/ubuntu resolute/main s390x apt s390x 3.1.8ubuntu1 [1432 kB] 50s Get:6 http://ftpmaster.internal/ubuntu resolute/main s390x libgirepository-1.0-1 s390x 1.86.0-6 [86.9 kB] 50s Get:7 http://ftpmaster.internal/ubuntu resolute/main s390x gir1.2-girepository-2.0 s390x 1.86.0-6 [25.1 kB] 50s Get:8 http://ftpmaster.internal/ubuntu resolute/main s390x lto-disabled-list all 71 [12.5 kB] 51s dpkg-preconfigure: unable to re-open stdin: No such file or directory 51s Fetched 2763 kB in 1s (3055 kB/s) 51s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56852 files and directories currently installed.) 51s Preparing to unpack .../python3-minimal_3.13.7-2_s390x.deb ... 51s Unpacking python3-minimal (3.13.7-2) over (3.13.7-1) ... 51s Setting up python3-minimal (3.13.7-2) ... 51s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56852 files and directories currently installed.) 51s Preparing to unpack .../0-python3_3.13.7-2_s390x.deb ... 51s running python pre-rtupdate hooks for python3.13... 51s Unpacking python3 (3.13.7-2) over (3.13.7-1) ... 51s Preparing to unpack .../1-libpython3-stdlib_3.13.7-2_s390x.deb ... 51s Unpacking libpython3-stdlib:s390x (3.13.7-2) over (3.13.7-1) ... 51s Preparing to unpack .../2-libapt-pkg7.0_3.1.8ubuntu1_s390x.deb ... 51s Unpacking libapt-pkg7.0:s390x (3.1.8ubuntu1) over (3.1.6ubuntu2) ... 51s Preparing to unpack .../3-apt_3.1.8ubuntu1_s390x.deb ... 51s Unpacking apt (3.1.8ubuntu1) over (3.1.6ubuntu2) ... 51s Preparing to unpack .../4-libgirepository-1.0-1_1.86.0-6_s390x.deb ... 51s Unpacking libgirepository-1.0-1:s390x (1.86.0-6) over (1.84.0-1) ... 51s Preparing to unpack .../5-gir1.2-girepository-2.0_1.86.0-6_s390x.deb ... 51s Unpacking gir1.2-girepository-2.0:s390x (1.86.0-6) over (1.84.0-1) ... 51s Preparing to unpack .../6-lto-disabled-list_71_all.deb ... 51s Unpacking lto-disabled-list (71) over (69) ... 51s Setting up lto-disabled-list (71) ... 51s Setting up libgirepository-1.0-1:s390x (1.86.0-6) ... 51s Setting up libapt-pkg7.0:s390x (3.1.8ubuntu1) ... 51s Setting up libpython3-stdlib:s390x (3.13.7-2) ... 51s Setting up apt (3.1.8ubuntu1) ... 52s Setting up python3 (3.13.7-2) ... 52s running python rtupdate hooks for python3.13... 52s running python post-rtupdate hooks for python3.13... 52s Setting up gir1.2-girepository-2.0:s390x (1.86.0-6) ... 52s Processing triggers for man-db (2.13.1-1) ... 53s Processing triggers for libc-bin (2.42-0ubuntu3) ... 53s autopkgtest [18:57:09]: upgrading testbed (apt dist-upgrade and autopurge) 54s Reading package lists... 54s Building dependency tree... 54s Reading state information... 54s Calculating upgrade... 54s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 54s Reading package lists... 54s Building dependency tree... 54s Reading state information... 54s Solving dependencies... 55s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 55s autopkgtest [18:57:11]: rebooting testbed after setup commands that affected boot 69s autopkgtest [18:57:25]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP Mon Sep 22 08:56:47 UTC 2025 71s autopkgtest [18:57:27]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 81s Get:1 http://ftpmaster.internal/ubuntu resolute/universe lammps 20250204+dfsg.1-2 (dsc) [3212 B] 81s Get:2 http://ftpmaster.internal/ubuntu resolute/universe lammps 20250204+dfsg.1-2 (tar) [132 MB] 81s Get:3 http://ftpmaster.internal/ubuntu resolute/universe lammps 20250204+dfsg.1-2 (diff) [17.3 kB] 81s gpgv: Signature made Mon Mar 3 06:11:14 2025 UTC 81s gpgv: using RSA key BBBD45EA818AB86FF67E7285D3E17383CFA7FF06 81s gpgv: Can't check signature: No public key 81s dpkg-source: warning: cannot verify inline signature for ./lammps_20250204+dfsg.1-2.dsc: no acceptable signature found 87s autopkgtest [18:57:43]: testing package lammps version 20250204+dfsg.1-2 88s autopkgtest [18:57:44]: build not needed 107s autopkgtest [18:58:03]: test crack: preparing testbed 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 108s Solving dependencies... 108s The following NEW packages will be installed: 108s fontconfig-config fonts-dejavu-core fonts-dejavu-mono lammps lammps-data 108s libaec0 libblas3 libcairo2 libdeflate0 libdouble-conversion3 libdrm-amdgpu1 108s libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 108s libfftw3-double3 libfontconfig1 libfreetype6 libgbm1 libgfortran5 libgl1 108s libgl1-mesa-dri libgl2ps1.4 libglew2.2 libglvnd0 libglx-mesa0 libglx0 108s libgomp1 libhdf5-310 libhdf5-hl-310 libhwloc-plugins libhwloc15 libjbig0 108s libjpeg-turbo8 libjpeg8 libjsoncpp26 libkim-api2 liblammps0t64 liblapack3 108s libnetcdf22 libogg0 libopengl0 libopenmpi40 libpciaccess0 libpixman-1-0 108s libpnetcdf6 libproj25 librdmacm1t64 libsharpyuv0 libsz2 libtbb12 108s libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheoradec1 libtheoraenc1 libtiff6 108s libtk8.6 libvoro++1 libvtk9.3 libvulkan1 libwebp7 libx11-xcb1 libxcb-dri3-0 108s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 108s libxcb-sync1 libxcb-xfixes0 libxft2 libxnvctrl0 libxrender1 libxshmfence1 108s libxss1 libxxf86vm1 mesa-libgallium mpi-default-bin ocl-icd-libopencl1 108s openmpi-bin openmpi-common proj-data x11-common 108s 0 upgraded, 83 newly installed, 0 to remove and 0 not upgraded. 108s Need to get 83.3 MB of archives. 108s After this operation, 372 MB of additional disk space will be used. 108s Get:1 http://ftpmaster.internal/ubuntu resolute/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 109s Get:2 http://ftpmaster.internal/ubuntu resolute/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 109s Get:3 http://ftpmaster.internal/ubuntu resolute/main s390x fontconfig-config s390x 2.15.0-2.3ubuntu1 [38.1 kB] 109s Get:4 http://ftpmaster.internal/ubuntu resolute/universe s390x lammps-data all 20250204+dfsg.1-2 [10.2 MB] 109s Get:5 http://ftpmaster.internal/ubuntu resolute/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 109s Get:6 http://ftpmaster.internal/ubuntu resolute/main s390x libblas3 s390x 3.12.1-6build1 [245 kB] 109s Get:7 http://ftpmaster.internal/ubuntu resolute/main s390x libfreetype6 s390x 2.13.3+dfsg-1build1 [430 kB] 109s Get:8 http://ftpmaster.internal/ubuntu resolute/main s390x libfontconfig1 s390x 2.15.0-2.3ubuntu1 [149 kB] 109s Get:9 http://ftpmaster.internal/ubuntu resolute/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 109s Get:10 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-render0 s390x 1.17.0-2build1 [16.9 kB] 109s Get:11 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-shm0 s390x 1.17.0-2build1 [5916 B] 109s Get:12 http://ftpmaster.internal/ubuntu resolute/main s390x libxrender1 s390x 1:0.9.12-1 [20.9 kB] 109s Get:13 http://ftpmaster.internal/ubuntu resolute/main s390x libcairo2 s390x 1.18.4-1build1 [580 kB] 109s Get:14 http://ftpmaster.internal/ubuntu resolute/main s390x libdeflate0 s390x 1.23-2 [46.0 kB] 109s Get:15 http://ftpmaster.internal/ubuntu resolute/universe s390x libdouble-conversion3 s390x 3.3.1-1build1 [43.5 kB] 109s Get:16 http://ftpmaster.internal/ubuntu resolute/main s390x libdrm-amdgpu1 s390x 2.4.125-1 [21.8 kB] 109s Get:17 http://ftpmaster.internal/ubuntu resolute/main s390x libevent-core-2.1-7t64 s390x 2.1.12-stable-10build1 [93.1 kB] 109s Get:18 http://ftpmaster.internal/ubuntu resolute/main s390x libevent-pthreads-2.1-7t64 s390x 2.1.12-stable-10build1 [8060 B] 109s Get:19 http://ftpmaster.internal/ubuntu resolute/main s390x librdmacm1t64 s390x 56.1-1ubuntu1 [73.6 kB] 109s Get:20 http://ftpmaster.internal/ubuntu resolute/universe s390x libfabric1 s390x 2.1.0-1.1 [640 kB] 109s Get:21 http://ftpmaster.internal/ubuntu resolute/main s390x libgomp1 s390x 15.2.0-5ubuntu1 [154 kB] 109s Get:22 http://ftpmaster.internal/ubuntu resolute/main s390x libfftw3-double3 s390x 3.3.10-2fakesync1build2 [512 kB] 110s Get:23 http://ftpmaster.internal/ubuntu resolute/main s390x libx11-xcb1 s390x 2:1.8.12-1build1 [7972 B] 110s Get:24 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-dri3-0 s390x 1.17.0-2build1 [7688 B] 110s Get:25 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-present0 s390x 1.17.0-2build1 [6346 B] 110s Get:26 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-randr0 s390x 1.17.0-2build1 [19.0 kB] 110s Get:27 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-sync1 s390x 1.17.0-2build1 [9530 B] 110s Get:28 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-xfixes0 s390x 1.17.0-2build1 [10.6 kB] 110s Get:29 http://ftpmaster.internal/ubuntu resolute/main s390x libxshmfence1 s390x 1.3.3-1 [5202 B] 110s Get:30 http://ftpmaster.internal/ubuntu resolute/main s390x mesa-libgallium s390x 25.2.3-1ubuntu1 [8319 kB] 110s Get:31 http://ftpmaster.internal/ubuntu resolute/main s390x libgbm1 s390x 25.2.3-1ubuntu1 [34.7 kB] 110s Get:32 http://ftpmaster.internal/ubuntu resolute/main s390x libgfortran5 s390x 15.2.0-5ubuntu1 [629 kB] 110s Get:33 http://ftpmaster.internal/ubuntu resolute/main s390x libvulkan1 s390x 1.4.321.0-1 [147 kB] 110s Get:34 http://ftpmaster.internal/ubuntu resolute/main s390x libgl1-mesa-dri s390x 25.2.3-1ubuntu1 [36.0 kB] 110s Get:35 http://ftpmaster.internal/ubuntu resolute/main s390x libglvnd0 s390x 1.7.0-1build2 [107 kB] 110s Get:36 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-glx0 s390x 1.17.0-2build1 [25.6 kB] 110s Get:37 http://ftpmaster.internal/ubuntu resolute/main s390x libxxf86vm1 s390x 1:1.1.4-1build4 [9630 B] 110s Get:38 http://ftpmaster.internal/ubuntu resolute/main s390x libglx-mesa0 s390x 25.2.3-1ubuntu1 [114 kB] 110s Get:39 http://ftpmaster.internal/ubuntu resolute/main s390x libglx0 s390x 1.7.0-1build2 [30.9 kB] 110s Get:40 http://ftpmaster.internal/ubuntu resolute/main s390x libgl1 s390x 1.7.0-1build2 [135 kB] 110s Get:41 http://ftpmaster.internal/ubuntu resolute/universe s390x libgl2ps1.4 s390x 1.4.2+dfsg1-2build1 [44.1 kB] 110s Get:42 http://ftpmaster.internal/ubuntu resolute/universe s390x libglew2.2 s390x 2.2.0-4build1 [195 kB] 110s Get:43 http://ftpmaster.internal/ubuntu resolute/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 110s Get:44 http://ftpmaster.internal/ubuntu resolute/universe s390x libhdf5-310 s390x 1.14.5+repack-3build1 [1477 kB] 110s Get:45 http://ftpmaster.internal/ubuntu resolute/universe s390x libhdf5-hl-310 s390x 1.14.5+repack-3build1 [61.1 kB] 110s Get:46 http://ftpmaster.internal/ubuntu resolute/universe s390x libhwloc15 s390x 2.12.2-1 [175 kB] 110s Get:47 http://ftpmaster.internal/ubuntu resolute/main s390x libjpeg-turbo8 s390x 2.1.5-4ubuntu2 [147 kB] 110s Get:48 http://ftpmaster.internal/ubuntu resolute/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 110s Get:49 http://ftpmaster.internal/ubuntu resolute/main s390x libjsoncpp26 s390x 1.9.6-3 [80.8 kB] 110s Get:50 http://ftpmaster.internal/ubuntu resolute/universe s390x libkim-api2 s390x 2.3.0-1ubuntu1 [602 kB] 110s Get:51 http://ftpmaster.internal/ubuntu resolute/main s390x liblapack3 s390x 3.12.1-6build1 [2910 kB] 110s Get:52 http://ftpmaster.internal/ubuntu resolute/universe s390x libnetcdf22 s390x 1:4.9.3-1build1 [583 kB] 110s Get:53 http://ftpmaster.internal/ubuntu resolute/main s390x libpciaccess0 s390x 0.18.1-1ubuntu2 [19.1 kB] 110s Get:54 http://ftpmaster.internal/ubuntu resolute/main s390x libxnvctrl0 s390x 510.47.03-0ubuntu4 [12.7 kB] 110s Get:55 http://ftpmaster.internal/ubuntu resolute/main s390x ocl-icd-libopencl1 s390x 2.3.3-1 [44.9 kB] 110s Get:56 http://ftpmaster.internal/ubuntu resolute/universe s390x libhwloc-plugins s390x 2.12.2-1 [15.9 kB] 110s Get:57 http://ftpmaster.internal/ubuntu resolute/universe s390x libopenmpi40 s390x 5.0.8-8ubuntu1 [2907 kB] 110s Get:58 http://ftpmaster.internal/ubuntu resolute/universe s390x libpnetcdf6 s390x 1.14.0-2 [1172 kB] 110s Get:59 http://ftpmaster.internal/ubuntu resolute/universe s390x libvoro++1 s390x 0.5+revert-to-0.4.6+dfsg1-1 [110 kB] 110s Get:60 http://ftpmaster.internal/ubuntu resolute/main s390x libogg0 s390x 1.3.5-3build1 [24.4 kB] 110s Get:61 http://ftpmaster.internal/ubuntu resolute/main s390x libopengl0 s390x 1.7.0-1build2 [44.9 kB] 110s Get:62 http://ftpmaster.internal/ubuntu resolute/universe s390x proj-data all 9.6.0-1 [7955 kB] 110s Get:63 http://ftpmaster.internal/ubuntu resolute/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 110s Get:64 http://ftpmaster.internal/ubuntu resolute/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 110s Get:65 http://ftpmaster.internal/ubuntu resolute/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 110s Get:66 http://ftpmaster.internal/ubuntu resolute/main s390x libtiff6 s390x 4.7.0-3ubuntu3 [222 kB] 110s Get:67 http://ftpmaster.internal/ubuntu resolute/universe s390x libproj25 s390x 9.6.0-1 [1467 kB] 110s Get:68 http://ftpmaster.internal/ubuntu resolute/universe s390x libtbbbind-2-5 s390x 2022.1.0-1 [14.7 kB] 110s Get:69 http://ftpmaster.internal/ubuntu resolute/universe s390x libtbbmalloc2 s390x 2022.1.0-1 [58.4 kB] 110s Get:70 http://ftpmaster.internal/ubuntu resolute/universe s390x libtbb12 s390x 2022.1.0-1 [100 kB] 110s Get:71 http://ftpmaster.internal/ubuntu resolute/main s390x libtcl8.6 s390x 8.6.17+dfsg-1 [1034 kB] 110s Get:72 http://ftpmaster.internal/ubuntu resolute/main s390x libtheoradec1 s390x 1.2.0~alpha1+dfsg-6 [68.6 kB] 110s Get:73 http://ftpmaster.internal/ubuntu resolute/main s390x libtheoraenc1 s390x 1.2.0~alpha1+dfsg-6 [142 kB] 110s Get:74 http://ftpmaster.internal/ubuntu resolute/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 111s Get:75 http://ftpmaster.internal/ubuntu resolute/main s390x x11-common all 1:7.7+24ubuntu1 [22.4 kB] 111s Get:76 http://ftpmaster.internal/ubuntu resolute/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 111s Get:77 http://ftpmaster.internal/ubuntu resolute/main s390x libtk8.6 s390x 8.6.17-1 [828 kB] 111s Get:78 http://ftpmaster.internal/ubuntu resolute/universe s390x libvtk9.3 s390x 9.3.0+dfsg1-4ubuntu2 [27.1 MB] 111s Get:79 http://ftpmaster.internal/ubuntu resolute/universe s390x liblammps0t64 s390x 20250204+dfsg.1-2 [8532 kB] 112s Get:80 http://ftpmaster.internal/ubuntu resolute/universe s390x openmpi-common all 5.0.8-8ubuntu1 [108 kB] 112s Get:81 http://ftpmaster.internal/ubuntu resolute/universe s390x openmpi-bin s390x 5.0.8-8ubuntu1 [199 kB] 112s Get:82 http://ftpmaster.internal/ubuntu resolute/universe s390x mpi-default-bin s390x 1.18 [2510 B] 112s Get:83 http://ftpmaster.internal/ubuntu resolute/universe s390x lammps s390x 20250204+dfsg.1-2 [15.5 kB] 112s Fetched 83.3 MB in 4s (23.0 MB/s) 112s Selecting previously unselected package fonts-dejavu-mono. 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56852 files and directories currently installed.) 112s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 112s Unpacking fonts-dejavu-mono (2.37-8) ... 112s Selecting previously unselected package fonts-dejavu-core. 112s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 112s Unpacking fonts-dejavu-core (2.37-8) ... 112s Selecting previously unselected package fontconfig-config. 112s Preparing to unpack .../02-fontconfig-config_2.15.0-2.3ubuntu1_s390x.deb ... 112s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 112s Selecting previously unselected package lammps-data. 112s Preparing to unpack .../03-lammps-data_20250204+dfsg.1-2_all.deb ... 112s Unpacking lammps-data (20250204+dfsg.1-2) ... 112s Selecting previously unselected package libaec0:s390x. 112s Preparing to unpack .../04-libaec0_1.1.3-1_s390x.deb ... 112s Unpacking libaec0:s390x (1.1.3-1) ... 112s Selecting previously unselected package libblas3:s390x. 112s Preparing to unpack .../05-libblas3_3.12.1-6build1_s390x.deb ... 112s Unpacking libblas3:s390x (3.12.1-6build1) ... 113s Selecting previously unselected package libfreetype6:s390x. 113s Preparing to unpack .../06-libfreetype6_2.13.3+dfsg-1build1_s390x.deb ... 113s Unpacking libfreetype6:s390x (2.13.3+dfsg-1build1) ... 113s Selecting previously unselected package libfontconfig1:s390x. 113s Preparing to unpack .../07-libfontconfig1_2.15.0-2.3ubuntu1_s390x.deb ... 113s Unpacking libfontconfig1:s390x (2.15.0-2.3ubuntu1) ... 113s Selecting previously unselected package libpixman-1-0:s390x. 113s Preparing to unpack .../08-libpixman-1-0_0.44.0-3_s390x.deb ... 113s Unpacking libpixman-1-0:s390x (0.44.0-3) ... 113s Selecting previously unselected package libxcb-render0:s390x. 113s Preparing to unpack .../09-libxcb-render0_1.17.0-2build1_s390x.deb ... 113s Unpacking libxcb-render0:s390x (1.17.0-2build1) ... 113s Selecting previously unselected package libxcb-shm0:s390x. 113s Preparing to unpack .../10-libxcb-shm0_1.17.0-2build1_s390x.deb ... 113s Unpacking libxcb-shm0:s390x (1.17.0-2build1) ... 113s Selecting previously unselected package libxrender1:s390x. 113s Preparing to unpack .../11-libxrender1_1%3a0.9.12-1_s390x.deb ... 113s Unpacking libxrender1:s390x (1:0.9.12-1) ... 113s Selecting previously unselected package libcairo2:s390x. 113s Preparing to unpack .../12-libcairo2_1.18.4-1build1_s390x.deb ... 113s Unpacking libcairo2:s390x (1.18.4-1build1) ... 113s Selecting previously unselected package libdeflate0:s390x. 113s Preparing to unpack .../13-libdeflate0_1.23-2_s390x.deb ... 113s Unpacking libdeflate0:s390x (1.23-2) ... 113s Selecting previously unselected package libdouble-conversion3:s390x. 113s Preparing to unpack .../14-libdouble-conversion3_3.3.1-1build1_s390x.deb ... 113s Unpacking libdouble-conversion3:s390x (3.3.1-1build1) ... 113s Selecting previously unselected package libdrm-amdgpu1:s390x. 113s Preparing to unpack .../15-libdrm-amdgpu1_2.4.125-1_s390x.deb ... 113s Unpacking libdrm-amdgpu1:s390x (2.4.125-1) ... 113s Selecting previously unselected package libevent-core-2.1-7t64:s390x. 113s Preparing to unpack .../16-libevent-core-2.1-7t64_2.1.12-stable-10build1_s390x.deb ... 113s Unpacking libevent-core-2.1-7t64:s390x (2.1.12-stable-10build1) ... 113s Selecting previously unselected package libevent-pthreads-2.1-7t64:s390x. 113s Preparing to unpack .../17-libevent-pthreads-2.1-7t64_2.1.12-stable-10build1_s390x.deb ... 113s Unpacking libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-10build1) ... 113s Selecting previously unselected package librdmacm1t64:s390x. 113s Preparing to unpack .../18-librdmacm1t64_56.1-1ubuntu1_s390x.deb ... 113s Unpacking librdmacm1t64:s390x (56.1-1ubuntu1) ... 113s Selecting previously unselected package libfabric1:s390x. 113s Preparing to unpack .../19-libfabric1_2.1.0-1.1_s390x.deb ... 113s Unpacking libfabric1:s390x (2.1.0-1.1) ... 113s Selecting previously unselected package libgomp1:s390x. 113s Preparing to unpack .../20-libgomp1_15.2.0-5ubuntu1_s390x.deb ... 113s Unpacking libgomp1:s390x (15.2.0-5ubuntu1) ... 113s Selecting previously unselected package libfftw3-double3:s390x. 113s Preparing to unpack .../21-libfftw3-double3_3.3.10-2fakesync1build2_s390x.deb ... 113s Unpacking libfftw3-double3:s390x (3.3.10-2fakesync1build2) ... 113s Selecting previously unselected package libx11-xcb1:s390x. 113s Preparing to unpack .../22-libx11-xcb1_2%3a1.8.12-1build1_s390x.deb ... 113s Unpacking libx11-xcb1:s390x (2:1.8.12-1build1) ... 113s Selecting previously unselected package libxcb-dri3-0:s390x. 113s Preparing to unpack .../23-libxcb-dri3-0_1.17.0-2build1_s390x.deb ... 113s Unpacking libxcb-dri3-0:s390x (1.17.0-2build1) ... 113s Selecting previously unselected package libxcb-present0:s390x. 113s Preparing to unpack .../24-libxcb-present0_1.17.0-2build1_s390x.deb ... 113s Unpacking libxcb-present0:s390x (1.17.0-2build1) ... 113s Selecting previously unselected package libxcb-randr0:s390x. 113s Preparing to unpack .../25-libxcb-randr0_1.17.0-2build1_s390x.deb ... 113s Unpacking libxcb-randr0:s390x (1.17.0-2build1) ... 113s Selecting previously unselected package libxcb-sync1:s390x. 113s Preparing to unpack .../26-libxcb-sync1_1.17.0-2build1_s390x.deb ... 113s Unpacking libxcb-sync1:s390x (1.17.0-2build1) ... 113s Selecting previously unselected package libxcb-xfixes0:s390x. 113s Preparing to unpack .../27-libxcb-xfixes0_1.17.0-2build1_s390x.deb ... 113s Unpacking libxcb-xfixes0:s390x (1.17.0-2build1) ... 113s Selecting previously unselected package libxshmfence1:s390x. 113s Preparing to unpack .../28-libxshmfence1_1.3.3-1_s390x.deb ... 113s Unpacking libxshmfence1:s390x (1.3.3-1) ... 113s Selecting previously unselected package mesa-libgallium:s390x. 113s Preparing to unpack .../29-mesa-libgallium_25.2.3-1ubuntu1_s390x.deb ... 113s Unpacking mesa-libgallium:s390x (25.2.3-1ubuntu1) ... 113s Selecting previously unselected package libgbm1:s390x. 113s Preparing to unpack .../30-libgbm1_25.2.3-1ubuntu1_s390x.deb ... 113s Unpacking libgbm1:s390x (25.2.3-1ubuntu1) ... 113s Selecting previously unselected package libgfortran5:s390x. 113s Preparing to unpack .../31-libgfortran5_15.2.0-5ubuntu1_s390x.deb ... 113s Unpacking libgfortran5:s390x (15.2.0-5ubuntu1) ... 113s Selecting previously unselected package libvulkan1:s390x. 113s Preparing to unpack .../32-libvulkan1_1.4.321.0-1_s390x.deb ... 113s Unpacking libvulkan1:s390x (1.4.321.0-1) ... 113s Selecting previously unselected package libgl1-mesa-dri:s390x. 113s Preparing to unpack .../33-libgl1-mesa-dri_25.2.3-1ubuntu1_s390x.deb ... 113s Unpacking libgl1-mesa-dri:s390x (25.2.3-1ubuntu1) ... 113s Selecting previously unselected package libglvnd0:s390x. 113s Preparing to unpack .../34-libglvnd0_1.7.0-1build2_s390x.deb ... 113s Unpacking libglvnd0:s390x (1.7.0-1build2) ... 113s Selecting previously unselected package libxcb-glx0:s390x. 113s Preparing to unpack .../35-libxcb-glx0_1.17.0-2build1_s390x.deb ... 113s Unpacking libxcb-glx0:s390x (1.17.0-2build1) ... 113s Selecting previously unselected package libxxf86vm1:s390x. 113s Preparing to unpack .../36-libxxf86vm1_1%3a1.1.4-1build4_s390x.deb ... 113s Unpacking libxxf86vm1:s390x (1:1.1.4-1build4) ... 113s Selecting previously unselected package libglx-mesa0:s390x. 113s Preparing to unpack .../37-libglx-mesa0_25.2.3-1ubuntu1_s390x.deb ... 113s Unpacking libglx-mesa0:s390x (25.2.3-1ubuntu1) ... 113s Selecting previously unselected package libglx0:s390x. 113s Preparing to unpack .../38-libglx0_1.7.0-1build2_s390x.deb ... 113s Unpacking libglx0:s390x (1.7.0-1build2) ... 113s Selecting previously unselected package libgl1:s390x. 113s Preparing to unpack .../39-libgl1_1.7.0-1build2_s390x.deb ... 113s Unpacking libgl1:s390x (1.7.0-1build2) ... 113s Selecting previously unselected package libgl2ps1.4. 113s Preparing to unpack .../40-libgl2ps1.4_1.4.2+dfsg1-2build1_s390x.deb ... 113s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 113s Selecting previously unselected package libglew2.2:s390x. 113s Preparing to unpack .../41-libglew2.2_2.2.0-4build1_s390x.deb ... 113s Unpacking libglew2.2:s390x (2.2.0-4build1) ... 113s Selecting previously unselected package libsz2:s390x. 113s Preparing to unpack .../42-libsz2_1.1.3-1_s390x.deb ... 113s Unpacking libsz2:s390x (1.1.3-1) ... 113s Selecting previously unselected package libhdf5-310:s390x. 113s Preparing to unpack .../43-libhdf5-310_1.14.5+repack-3build1_s390x.deb ... 113s Unpacking libhdf5-310:s390x (1.14.5+repack-3build1) ... 113s Selecting previously unselected package libhdf5-hl-310:s390x. 113s Preparing to unpack .../44-libhdf5-hl-310_1.14.5+repack-3build1_s390x.deb ... 113s Unpacking libhdf5-hl-310:s390x (1.14.5+repack-3build1) ... 113s Selecting previously unselected package libhwloc15:s390x. 113s Preparing to unpack .../45-libhwloc15_2.12.2-1_s390x.deb ... 113s Unpacking libhwloc15:s390x (2.12.2-1) ... 113s Selecting previously unselected package libjpeg-turbo8:s390x. 113s Preparing to unpack .../46-libjpeg-turbo8_2.1.5-4ubuntu2_s390x.deb ... 113s Unpacking libjpeg-turbo8:s390x (2.1.5-4ubuntu2) ... 113s Selecting previously unselected package libjpeg8:s390x. 113s Preparing to unpack .../47-libjpeg8_8c-2ubuntu11_s390x.deb ... 113s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 113s Selecting previously unselected package libjsoncpp26:s390x. 113s Preparing to unpack .../48-libjsoncpp26_1.9.6-3_s390x.deb ... 113s Unpacking libjsoncpp26:s390x (1.9.6-3) ... 113s Selecting previously unselected package libkim-api2:s390x. 113s Preparing to unpack .../49-libkim-api2_2.3.0-1ubuntu1_s390x.deb ... 113s Unpacking libkim-api2:s390x (2.3.0-1ubuntu1) ... 113s Selecting previously unselected package liblapack3:s390x. 113s Preparing to unpack .../50-liblapack3_3.12.1-6build1_s390x.deb ... 113s Unpacking liblapack3:s390x (3.12.1-6build1) ... 113s Selecting previously unselected package libnetcdf22:s390x. 113s Preparing to unpack .../51-libnetcdf22_1%3a4.9.3-1build1_s390x.deb ... 113s Unpacking libnetcdf22:s390x (1:4.9.3-1build1) ... 113s Selecting previously unselected package libpciaccess0:s390x. 113s Preparing to unpack .../52-libpciaccess0_0.18.1-1ubuntu2_s390x.deb ... 113s Unpacking libpciaccess0:s390x (0.18.1-1ubuntu2) ... 113s Selecting previously unselected package libxnvctrl0:s390x. 113s Preparing to unpack .../53-libxnvctrl0_510.47.03-0ubuntu4_s390x.deb ... 113s Unpacking libxnvctrl0:s390x (510.47.03-0ubuntu4) ... 113s Selecting previously unselected package ocl-icd-libopencl1:s390x. 113s Preparing to unpack .../54-ocl-icd-libopencl1_2.3.3-1_s390x.deb ... 113s Unpacking ocl-icd-libopencl1:s390x (2.3.3-1) ... 113s Selecting previously unselected package libhwloc-plugins:s390x. 113s Preparing to unpack .../55-libhwloc-plugins_2.12.2-1_s390x.deb ... 113s Unpacking libhwloc-plugins:s390x (2.12.2-1) ... 113s Selecting previously unselected package libopenmpi40:s390x. 113s Preparing to unpack .../56-libopenmpi40_5.0.8-8ubuntu1_s390x.deb ... 113s Unpacking libopenmpi40:s390x (5.0.8-8ubuntu1) ... 113s Selecting previously unselected package libpnetcdf6:s390x. 113s Preparing to unpack .../57-libpnetcdf6_1.14.0-2_s390x.deb ... 113s Unpacking libpnetcdf6:s390x (1.14.0-2) ... 113s Selecting previously unselected package libvoro++1. 113s Preparing to unpack .../58-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_s390x.deb ... 113s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 113s Selecting previously unselected package libogg0:s390x. 113s Preparing to unpack .../59-libogg0_1.3.5-3build1_s390x.deb ... 113s Unpacking libogg0:s390x (1.3.5-3build1) ... 113s Selecting previously unselected package libopengl0:s390x. 113s Preparing to unpack .../60-libopengl0_1.7.0-1build2_s390x.deb ... 113s Unpacking libopengl0:s390x (1.7.0-1build2) ... 113s Selecting previously unselected package proj-data. 113s Preparing to unpack .../61-proj-data_9.6.0-1_all.deb ... 113s Unpacking proj-data (9.6.0-1) ... 114s Selecting previously unselected package libjbig0:s390x. 114s Preparing to unpack .../62-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 114s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 114s Selecting previously unselected package libsharpyuv0:s390x. 114s Preparing to unpack .../63-libsharpyuv0_1.5.0-0.1_s390x.deb ... 114s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ... 114s Selecting previously unselected package libwebp7:s390x. 114s Preparing to unpack .../64-libwebp7_1.5.0-0.1_s390x.deb ... 114s Unpacking libwebp7:s390x (1.5.0-0.1) ... 114s Selecting previously unselected package libtiff6:s390x. 114s Preparing to unpack .../65-libtiff6_4.7.0-3ubuntu3_s390x.deb ... 114s Unpacking libtiff6:s390x (4.7.0-3ubuntu3) ... 114s Selecting previously unselected package libproj25:s390x. 114s Preparing to unpack .../66-libproj25_9.6.0-1_s390x.deb ... 114s Unpacking libproj25:s390x (9.6.0-1) ... 114s Selecting previously unselected package libtbbbind-2-5:s390x. 114s Preparing to unpack .../67-libtbbbind-2-5_2022.1.0-1_s390x.deb ... 114s Unpacking libtbbbind-2-5:s390x (2022.1.0-1) ... 114s Selecting previously unselected package libtbbmalloc2:s390x. 114s Preparing to unpack .../68-libtbbmalloc2_2022.1.0-1_s390x.deb ... 114s Unpacking libtbbmalloc2:s390x (2022.1.0-1) ... 114s Selecting previously unselected package libtbb12:s390x. 114s Preparing to unpack .../69-libtbb12_2022.1.0-1_s390x.deb ... 114s Unpacking libtbb12:s390x (2022.1.0-1) ... 114s Selecting previously unselected package libtcl8.6:s390x. 114s Preparing to unpack .../70-libtcl8.6_8.6.17+dfsg-1_s390x.deb ... 114s Unpacking libtcl8.6:s390x (8.6.17+dfsg-1) ... 114s Selecting previously unselected package libtheoradec1:s390x. 114s Preparing to unpack .../71-libtheoradec1_1.2.0~alpha1+dfsg-6_s390x.deb ... 114s Unpacking libtheoradec1:s390x (1.2.0~alpha1+dfsg-6) ... 114s Selecting previously unselected package libtheoraenc1:s390x. 114s Preparing to unpack .../72-libtheoraenc1_1.2.0~alpha1+dfsg-6_s390x.deb ... 114s Unpacking libtheoraenc1:s390x (1.2.0~alpha1+dfsg-6) ... 114s Selecting previously unselected package libxft2:s390x. 114s Preparing to unpack .../73-libxft2_2.3.6-1build1_s390x.deb ... 114s Unpacking libxft2:s390x (2.3.6-1build1) ... 114s Selecting previously unselected package x11-common. 114s Preparing to unpack .../74-x11-common_1%3a7.7+24ubuntu1_all.deb ... 114s Unpacking x11-common (1:7.7+24ubuntu1) ... 114s Selecting previously unselected package libxss1:s390x. 114s Preparing to unpack .../75-libxss1_1%3a1.2.3-1build3_s390x.deb ... 114s Unpacking libxss1:s390x (1:1.2.3-1build3) ... 114s Selecting previously unselected package libtk8.6:s390x. 114s Preparing to unpack .../76-libtk8.6_8.6.17-1_s390x.deb ... 114s Unpacking libtk8.6:s390x (8.6.17-1) ... 114s Selecting previously unselected package libvtk9.3:s390x. 114s Preparing to unpack .../77-libvtk9.3_9.3.0+dfsg1-4ubuntu2_s390x.deb ... 114s Unpacking libvtk9.3:s390x (9.3.0+dfsg1-4ubuntu2) ... 114s Selecting previously unselected package liblammps0t64:s390x. 114s Preparing to unpack .../78-liblammps0t64_20250204+dfsg.1-2_s390x.deb ... 114s Unpacking liblammps0t64:s390x (20250204+dfsg.1-2) ... 114s Selecting previously unselected package openmpi-common. 114s Preparing to unpack .../79-openmpi-common_5.0.8-8ubuntu1_all.deb ... 114s Unpacking openmpi-common (5.0.8-8ubuntu1) ... 115s Selecting previously unselected package openmpi-bin. 115s Preparing to unpack .../80-openmpi-bin_5.0.8-8ubuntu1_s390x.deb ... 115s Unpacking openmpi-bin (5.0.8-8ubuntu1) ... 115s Selecting previously unselected package mpi-default-bin. 115s Preparing to unpack .../81-mpi-default-bin_1.18_s390x.deb ... 115s Unpacking mpi-default-bin (1.18) ... 115s Selecting previously unselected package lammps. 115s Preparing to unpack .../82-lammps_20250204+dfsg.1-2_s390x.deb ... 115s Unpacking lammps (20250204+dfsg.1-2) ... 115s Setting up libxcb-dri3-0:s390x (1.17.0-2build1) ... 115s Setting up libtbbmalloc2:s390x (2022.1.0-1) ... 115s Setting up libpixman-1-0:s390x (0.44.0-3) ... 115s Setting up libsharpyuv0:s390x (1.5.0-0.1) ... 115s Setting up libx11-xcb1:s390x (2:1.8.12-1build1) ... 115s Setting up libpciaccess0:s390x (0.18.1-1ubuntu2) ... 115s Setting up libdouble-conversion3:s390x (3.3.1-1build1) ... 115s Setting up libxcb-xfixes0:s390x (1.17.0-2build1) ... 115s Setting up libogg0:s390x (1.3.5-3build1) ... 115s Setting up proj-data (9.6.0-1) ... 115s Setting up libxrender1:s390x (1:0.9.12-1) ... 115s Setting up lammps-data (20250204+dfsg.1-2) ... 115s Setting up libxcb-render0:s390x (1.17.0-2build1) ... 115s Setting up libglvnd0:s390x (1.7.0-1build2) ... 115s Setting up libxcb-glx0:s390x (1.17.0-2build1) ... 115s Setting up x11-common (1:7.7+24ubuntu1) ... 115s Setting up libdeflate0:s390x (1.23-2) ... 115s Setting up libxcb-shm0:s390x (1.17.0-2build1) ... 115s Setting up libgomp1:s390x (15.2.0-5ubuntu1) ... 115s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 115s Setting up libaec0:s390x (1.1.3-1) ... 115s Setting up libopengl0:s390x (1.7.0-1build2) ... 115s Setting up libxxf86vm1:s390x (1:1.1.4-1build4) ... 115s Setting up libxnvctrl0:s390x (510.47.03-0ubuntu4) ... 115s Setting up libxcb-present0:s390x (1.17.0-2build1) ... 115s Setting up libtheoraenc1:s390x (1.2.0~alpha1+dfsg-6) ... 115s Setting up libblas3:s390x (3.12.1-6build1) ... 115s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 115s Setting up libfreetype6:s390x (2.13.3+dfsg-1build1) ... 115s Setting up libxcb-sync1:s390x (1.17.0-2build1) ... 115s Setting up libjsoncpp26:s390x (1.9.6-3) ... 115s Setting up fonts-dejavu-mono (2.37-8) ... 115s Setting up libhwloc15:s390x (2.12.2-1) ... 115s Setting up libtcl8.6:s390x (8.6.17+dfsg-1) ... 115s Setting up fonts-dejavu-core (2.37-8) ... 115s Setting up libjpeg-turbo8:s390x (2.1.5-4ubuntu2) ... 115s Setting up libfftw3-double3:s390x (3.3.10-2fakesync1build2) ... 115s Setting up libgfortran5:s390x (15.2.0-5ubuntu1) ... 115s Setting up libvulkan1:s390x (1.4.321.0-1) ... 115s Setting up libwebp7:s390x (1.5.0-0.1) ... 115s Setting up ocl-icd-libopencl1:s390x (2.3.3-1) ... 115s Setting up libxshmfence1:s390x (1.3.3-1) ... 115s Setting up libxcb-randr0:s390x (1.17.0-2build1) ... 115s Setting up openmpi-common (5.0.8-8ubuntu1) ... 115s Setting up librdmacm1t64:s390x (56.1-1ubuntu1) ... 115s Setting up libevent-core-2.1-7t64:s390x (2.1.12-stable-10build1) ... 115s Setting up libxss1:s390x (1:1.2.3-1build3) ... 115s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 115s Setting up libsz2:s390x (1.1.3-1) ... 115s Setting up libdrm-amdgpu1:s390x (2.4.125-1) ... 115s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 115s Setting up libfabric1:s390x (2.1.0-1.1) ... 115s Setting up mesa-libgallium:s390x (25.2.3-1ubuntu1) ... 115s Setting up liblapack3:s390x (3.12.1-6build1) ... 115s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 115s Setting up libgbm1:s390x (25.2.3-1ubuntu1) ... 115s Setting up libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-10build1) ... 115s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 115s Setting up libgl1-mesa-dri:s390x (25.2.3-1ubuntu1) ... 115s Setting up libkim-api2:s390x (2.3.0-1ubuntu1) ... 115s Setting up libhwloc-plugins:s390x (2.12.2-1) ... 115s Setting up libtbbbind-2-5:s390x (2022.1.0-1) ... 115s Setting up libhdf5-310:s390x (1.14.5+repack-3build1) ... 115s Setting up libtiff6:s390x (4.7.0-3ubuntu3) ... 115s Setting up libfontconfig1:s390x (2.15.0-2.3ubuntu1) ... 115s Setting up libopenmpi40:s390x (5.0.8-8ubuntu1) ... 115s Setting up libhdf5-hl-310:s390x (1.14.5+repack-3build1) ... 115s Setting up libxft2:s390x (2.3.6-1build1) ... 115s Setting up libglx-mesa0:s390x (25.2.3-1ubuntu1) ... 115s Setting up libglx0:s390x (1.7.0-1build2) ... 115s Setting up libproj25:s390x (9.6.0-1) ... 115s Setting up libpnetcdf6:s390x (1.14.0-2) ... 115s Setting up libtk8.6:s390x (8.6.17-1) ... 115s Setting up libnetcdf22:s390x (1:4.9.3-1build1) ... 115s Setting up libtbb12:s390x (2022.1.0-1) ... 115s Setting up libcairo2:s390x (1.18.4-1build1) ... 115s Setting up libgl1:s390x (1.7.0-1build2) ... 115s Setting up libtheoradec1:s390x (1.2.0~alpha1+dfsg-6) ... 115s Setting up libglew2.2:s390x (2.2.0-4build1) ... 115s Setting up openmpi-bin (5.0.8-8ubuntu1) ... 115s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 115s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 115s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 115s Setting up mpi-default-bin (1.18) ... 115s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 115s Setting up libvtk9.3:s390x (9.3.0+dfsg1-4ubuntu2) ... 115s Setting up liblammps0t64:s390x (20250204+dfsg.1-2) ... 115s Setting up lammps (20250204+dfsg.1-2) ... 115s Processing triggers for man-db (2.13.1-1) ... 116s Processing triggers for libc-bin (2.42-0ubuntu3) ... 117s autopkgtest [18:58:13]: test crack: [----------------------- 117s LAMMPS (4 Feb 2025) 117s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 117s using 1 OpenMP thread(s) per MPI task 117s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 117s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 117s 2 by 1 by 1 MPI processor grid 117s Created 8141 atoms 117s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 117s create_atoms CPU = 0.000 seconds 117s 302 atoms in group lower 117s 302 atoms in group upper 117s 604 atoms in group boundary 117s 7537 atoms in group mobile 117s 841 atoms in group leftupper 117s 841 atoms in group leftlower 117s Setting atom values ... 117s 841 settings made for type 117s Setting atom values ... 117s 841 settings made for type 117s Setting atom values ... 117s 302 settings made for type 117s Setting atom values ... 117s 302 settings made for type 117s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 117s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 117s Neighbor list info ... 117s update: every = 1 steps, delay = 5 steps, check = yes 117s max neighbors/atom: 2000, page size: 100000 117s master list distance cutoff = 2.8 117s ghost atom cutoff = 2.8 117s binsize = 1.4, bins = 80 56 1 117s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 117s (1) pair lj/cut, perpetual 117s attributes: half, newton on 117s pair build: half/bin/atomonly/newton 117s stencil: half/bin/2d 117s bin: standard 117s Setting up Verlet run ... 117s Unit style : lj 117s Current step : 0 117s Time step : 0.003 117s Per MPI rank memory allocation (min/avg/max) = 3.097 | 3.097 | 3.097 Mbytes 117s Step Temp E_pair E_mol TotEng Press Volume 117s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 117s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 117s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 117s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 117s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 118s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 118s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 118s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 118s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 118s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 118s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 118s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 118s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 118s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 119s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 119s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 119s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 119s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 119s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 119s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 119s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 119s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 119s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 120s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 120s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 120s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 120s Loop time of 2.71781 on 2 procs for 5000 steps with 8141 atoms 120s 120s Performance: 476853.729 tau/day, 1839.713 timesteps/s, 14.977 Matom-step/s 120s 98.2% CPU use with 2 MPI tasks x 1 OpenMP threads 120s 120s MPI task timing breakdown: 120s Section | min time | avg time | max time |%varavg| %total 120s --------------------------------------------------------------- 120s Pair | 2.2115 | 2.2146 | 2.2177 | 0.2 | 81.48 120s Neigh | 0.12816 | 0.12871 | 0.12927 | 0.2 | 4.74 120s Comm | 0.098303 | 0.10541 | 0.11251 | 2.2 | 3.88 120s Output | 0.00087198 | 0.0015599 | 0.0022477 | 1.7 | 0.06 120s Modify | 0.19241 | 0.19756 | 0.20271 | 1.2 | 7.27 120s Other | | 0.06997 | | | 2.57 120s 120s Nlocal: 4070.5 ave 4085 max 4056 min 120s Histogram: 1 0 0 0 0 0 0 0 0 1 120s Nghost: 207 ave 208 max 206 min 120s Histogram: 1 0 0 0 0 0 0 0 0 1 120s Neighs: 35700 ave 35927 max 35473 min 120s Histogram: 1 0 0 0 0 0 0 0 0 1 120s 120s Total # of neighbors = 71400 120s Ave neighs/atom = 8.7704213 120s Neighbor list builds = 106 120s Dangerous builds = 0 120s Total wall time: 0:00:02 120s LAMMPS (4 Feb 2025) 125s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 125s using 1 OpenMP thread(s) per MPI task 125s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 125s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 125s 1 by 1 by 1 MPI processor grid 125s Created 8141 atoms 125s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 125s create_atoms CPU = 0.001 seconds 125s 302 atoms in group lower 125s 302 atoms in group upper 125s 604 atoms in group boundary 125s 7537 atoms in group mobile 125s 841 atoms in group leftupper 125s 841 atoms in group leftlower 125s Setting atom values ... 125s 841 settings made for type 125s Setting atom values ... 125s 841 settings made for type 125s Setting atom values ... 125s 302 settings made for type 125s Setting atom values ... 125s 302 settings made for type 125s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 125s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 125s Neighbor list info ... 125s update: every = 1 steps, delay = 5 steps, check = yes 125s max neighbors/atom: 2000, page size: 100000 125s master list distance cutoff = 2.8 125s ghost atom cutoff = 2.8 125s binsize = 1.4, bins = 80 56 1 125s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 125s (1) pair lj/cut, perpetual 125s attributes: half, newton on 125s pair build: half/bin/atomonly/newton 125s stencil: half/bin/2d 125s bin: standard 125s Setting up Verlet run ... 125s Unit style : lj 125s Current step : 0 125s Time step : 0.003 125s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 125s Step Temp E_pair E_mol TotEng Press Volume 125s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 125s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 125s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 125s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 125s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 125s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 125s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 125s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 125s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 125s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 125s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 125s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 125s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 125s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 125s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 125s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 125s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 125s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 125s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 125s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 125s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 125s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 125s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 125s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 125s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 125s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 125s Loop time of 5.23241 on 1 procs for 5000 steps with 8141 atoms 125s 125s Performance: 247687.025 tau/day, 955.583 timesteps/s, 7.779 Matom-step/s 125s 96.5% CPU use with 1 MPI tasks x 1 OpenMP threads 125s 125s MPI task timing breakdown: 125s Section | min time | avg time | max time |%varavg| %total 125s --------------------------------------------------------------- 125s Pair | 4.4575 | 4.4575 | 4.4575 | 0.0 | 85.19 125s Neigh | 0.24457 | 0.24457 | 0.24457 | 0.0 | 4.67 125s Comm | 0.0028498 | 0.0028498 | 0.0028498 | 0.0 | 0.05 125s Output | 0.00158 | 0.00158 | 0.00158 | 0.0 | 0.03 125s Modify | 0.41798 | 0.41798 | 0.41798 | 0.0 | 7.99 125s Other | | 0.1079 | | | 2.06 125s 125s Nlocal: 8141 ave 8141 max 8141 min 125s Histogram: 1 0 0 0 0 0 0 0 0 0 125s Nghost: 0 ave 0 max 0 min 125s Histogram: 1 0 0 0 0 0 0 0 0 0 125s Neighs: 71389 ave 71389 max 71389 min 125s Histogram: 1 0 0 0 0 0 0 0 0 0 125s 125s Total # of neighbors = 71389 125s Ave neighs/atom = 8.7690701 125s Neighbor list builds = 100 125s Dangerous builds = 0 125s Total wall time: 0:00:05 125s run: OK 125s autopkgtest [18:58:21]: test crack: -----------------------] 126s crack PASS 126s autopkgtest [18:58:22]: test crack: - - - - - - - - - - results - - - - - - - - - - 126s autopkgtest [18:58:22]: test dipole: preparing testbed 127s Reading package lists... 127s Building dependency tree... 127s Reading state information... 127s Solving dependencies... 127s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 127s autopkgtest [18:58:23]: test dipole: [----------------------- 128s LAMMPS (4 Feb 2025) 128s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 128s using 1 OpenMP thread(s) per MPI task 128s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 128s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 128s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 128s 2 by 1 by 1 MPI processor grid 128s Created 200 atoms 128s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 128s create_atoms CPU = 0.000 seconds 128s Setting atom values ... 128s 200 settings made for mass 128s Setting atom values ... 128s 200 settings made for dipole/random 128s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 128s Neighbor list info ... 128s update: every = 1 steps, delay = 0 steps, check = yes 128s max neighbors/atom: 2000, page size: 100000 128s master list distance cutoff = 2.8 128s ghost atom cutoff = 2.8 128s binsize = 1.4, bins = 13 13 2 128s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 128s (1) pair lj/cut/dipole/cut, perpetual 128s attributes: half, newton on 128s pair build: half/bin/atomonly/newton 128s stencil: half/bin/2d 128s bin: standard 128s Setting up Verlet run ... 128s Unit style : lj 128s Current step : 0 128s Time step : 0.005 128s Per MPI rank memory allocation (min/avg/max) = 5.049 | 5.049 | 5.049 Mbytes 128s Step Temp E_pair c_erot TotEng Press 128s 0 0 -2.1717485 0 -2.1717485 -2.5549017 128s 500 0.39555366 -2.8050759 0.22195366 -2.4115 -0.21605406 128s 1000 0.4062916 -2.8050542 0.22105842 -2.400794 -0.37250231 128s 1500 0.44946161 -2.8276171 0.20908634 -2.3804028 -0.19355614 128s 2000 0.41682156 -2.8150619 0.2305314 -2.4003245 -0.12755885 128s 2500 0.4223725 -2.7993826 0.21202048 -2.3791219 -0.42760254 128s 3000 0.40674172 -2.7701159 0.20435228 -2.3654079 0.12191183 128s 3500 0.41566211 -2.7940342 0.2127683 -2.3804504 -0.047420259 128s 4000 0.39899304 -2.7922419 0.23261768 -2.3952438 -0.5584713 128s 4500 0.41521411 -2.7902637 0.21553109 -2.3771257 -0.39868711 128s 5000 0.43435521 -2.7839342 0.20079255 -2.3517508 -0.23557371 128s 5500 0.43573361 -2.832029 0.24954704 -2.3984741 -0.30757008 128s 6000 0.43444077 -2.7971759 0.22707649 -2.3649073 -0.050026659 128s 6500 0.45018406 -2.802489 0.21507806 -2.3545558 -0.24632195 128s 7000 0.50302088 -2.8284285 0.19272668 -2.3279228 0.21477101 128s 7500 0.40216423 -2.7684646 0.24505695 -2.3683112 -0.038037764 128s 8000 0.41559297 -2.759803 0.23021572 -2.346288 -0.2498825 128s 8500 0.44167949 -2.7440933 0.20455344 -2.3046222 0.035670346 128s 9000 0.4218566 -2.7577529 0.23796636 -2.3380055 -0.4366142 128s 9500 0.46009563 -2.7683135 0.2289365 -2.3105184 -0.11500533 128s 10000 0.41474987 -2.747283 0.25293544 -2.3346069 -0.20525996 128s Loop time of 0.408654 on 2 procs for 10000 steps with 200 atoms 128s 128s Performance: 10571296.890 tau/day, 24470.595 timesteps/s, 4.894 Matom-step/s 128s 100.0% CPU use with 2 MPI tasks x 1 OpenMP threads 128s 128s MPI task timing breakdown: 128s Section | min time | avg time | max time |%varavg| %total 128s --------------------------------------------------------------- 128s Pair | 0.2965 | 0.30176 | 0.30703 | 1.0 | 73.84 128s Neigh | 0.016593 | 0.016978 | 0.017363 | 0.3 | 4.15 128s Comm | 0.050998 | 0.057065 | 0.063132 | 2.5 | 13.96 128s Output | 0.00012366 | 0.00019462 | 0.00026558 | 0.0 | 0.05 128s Modify | 0.023601 | 0.024199 | 0.024797 | 0.4 | 5.92 128s Other | | 0.008452 | | | 2.07 128s 128s Nlocal: 100 ave 100 max 100 min 128s Histogram: 2 0 0 0 0 0 0 0 0 0 128s Nghost: 122.5 ave 125 max 120 min 128s Histogram: 1 0 0 0 0 0 0 0 0 1 128s Neighs: 801 ave 817 max 785 min 128s Histogram: 1 0 0 0 0 0 0 0 0 1 128s 128s Total # of neighbors = 1602 128s Ave neighs/atom = 8.01 128s Neighbor list builds = 681 128s Dangerous builds = 0 128s Total wall time: 0:00:00 128s LAMMPS (4 Feb 2025) 129s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 129s using 1 OpenMP thread(s) per MPI task 129s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 129s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 129s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 129s 1 by 1 by 1 MPI processor grid 129s Created 200 atoms 129s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 129s create_atoms CPU = 0.000 seconds 129s Setting atom values ... 129s 200 settings made for mass 129s Setting atom values ... 129s 200 settings made for dipole/random 129s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 129s Neighbor list info ... 129s update: every = 1 steps, delay = 0 steps, check = yes 129s max neighbors/atom: 2000, page size: 100000 129s master list distance cutoff = 2.8 129s ghost atom cutoff = 2.8 129s binsize = 1.4, bins = 13 13 2 129s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 129s (1) pair lj/cut/dipole/cut, perpetual 129s attributes: half, newton on 129s pair build: half/bin/atomonly/newton 129s stencil: half/bin/2d 129s bin: standard 129s Setting up Verlet run ... 129s Unit style : lj 129s Current step : 0 129s Time step : 0.005 129s Per MPI rank memory allocation (min/avg/max) = 5.05 | 5.05 | 5.05 Mbytes 129s Step Temp E_pair c_erot TotEng Press 129s 0 0 -2.1717485 0 -2.1717485 -2.5549017 129s 500 0.39555366 -2.8050759 0.22195366 -2.4115 -0.21605406 129s 1000 0.4062916 -2.8050542 0.22105842 -2.400794 -0.37250231 129s 1500 0.44946161 -2.8276171 0.20908634 -2.3804028 -0.19355613 129s 2000 0.4168217 -2.8150621 0.2305314 -2.4003245 -0.12755874 129s 2500 0.42235256 -2.79937 0.21201967 -2.3791292 -0.42752528 129s 3000 0.40118286 -2.7566267 0.19795371 -2.3574498 0.17122949 129s 3500 0.41913359 -2.789969 0.21614734 -2.3729311 -0.22517024 129s 4000 0.4121296 -2.7638868 0.20353041 -2.3538179 -0.07160792 129s 4500 0.45366888 -2.8425735 0.24841497 -2.391173 0.11913846 129s 5000 0.4311204 -2.8002159 0.22949783 -2.3712511 0.23492578 129s 5500 0.44426372 -2.7935996 0.21466537 -2.3515572 0.16360579 129s 6000 0.43178553 -2.7534884 0.19794383 -2.3238618 -0.16038048 129s 6500 0.4124462 -2.7482024 0.21992912 -2.3378185 -0.18038226 129s 7000 0.41507218 -2.7528753 0.21771614 -2.3398785 -0.062657125 129s 7500 0.45230794 -2.7783727 0.21423215 -2.3283263 -0.044538456 129s 8000 0.42726335 -2.7931306 0.26364827 -2.3680036 -0.24929222 129s 8500 0.41614819 -2.7456553 0.23149494 -2.3315878 0.059511435 129s 9000 0.46797377 -2.791191 0.21950369 -2.3255571 -0.094337938 129s 9500 0.44990418 -2.7984325 0.24896606 -2.3507778 -0.34897551 129s 10000 0.45951563 -2.7688659 0.21262443 -2.3116478 -0.29263014 129s Loop time of 0.736991 on 1 procs for 10000 steps with 200 atoms 129s 129s Performance: 5861669.063 tau/day, 13568.678 timesteps/s, 2.714 Matom-step/s 129s 99.1% CPU use with 1 MPI tasks x 1 OpenMP threads 129s 129s MPI task timing breakdown: 129s Section | min time | avg time | max time |%varavg| %total 129s --------------------------------------------------------------- 129s Pair | 0.60487 | 0.60487 | 0.60487 | 0.0 | 82.07 129s Neigh | 0.03302 | 0.03302 | 0.03302 | 0.0 | 4.48 129s Comm | 0.025847 | 0.025847 | 0.025847 | 0.0 | 3.51 129s Output | 0.00015198 | 0.00015198 | 0.00015198 | 0.0 | 0.02 129s Modify | 0.065288 | 0.065288 | 0.065288 | 0.0 | 8.86 129s Other | | 0.007812 | | | 1.06 129s 129s Nlocal: 200 ave 200 max 200 min 129s Histogram: 1 0 0 0 0 0 0 0 0 0 129s Nghost: 146 ave 146 max 146 min 129s Histogram: 1 0 0 0 0 0 0 0 0 0 129s Neighs: 1608 ave 1608 max 1608 min 129s Histogram: 1 0 0 0 0 0 0 0 0 0 129s 129s Total # of neighbors = 1608 129s Ave neighs/atom = 8.04 129s Neighbor list builds = 685 129s Dangerous builds = 0 129s Total wall time: 0:00:00 129s run: OK 129s autopkgtest [18:58:25]: test dipole: -----------------------] 130s dipole PASS 130s autopkgtest [18:58:26]: test dipole: - - - - - - - - - - results - - - - - - - - - - 130s autopkgtest [18:58:26]: test ellipse: preparing testbed 130s Reading package lists... 130s Building dependency tree... 130s Reading state information... 130s Solving dependencies... 131s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 131s autopkgtest [18:58:27]: test ellipse: [----------------------- 131s LAMMPS (4 Feb 2025) 131s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 131s using 1 OpenMP thread(s) per MPI task 131s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 131s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 131s 2 by 1 by 1 MPI processor grid 131s Created 400 atoms 131s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 131s create_atoms CPU = 0.000 seconds 131s Setting atom values ... 131s 48 settings made for type/fraction 131s Setting atom values ... 131s 352 settings made for mass 131s Setting atom values ... 131s 48 settings made for mass 131s Setting atom values ... 131s 352 settings made for shape 131s Setting atom values ... 131s 48 settings made for shape 131s Setting atom values ... 131s 400 settings made for quat/random 131s 352 atoms in group spheroid 131s 131s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 131s 131s Your simulation uses code contributions which should be cited: 131s - pair gayberne command: doi:10.1063/1.3058435 131s The log file lists these citations in BibTeX format. 131s 131s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 131s 131s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 131s Neighbor list info ... 131s update: every = 1 steps, delay = 0 steps, check = yes 131s max neighbors/atom: 2000, page size: 100000 131s master list distance cutoff = 4.8 131s ghost atom cutoff = 4.8 131s binsize = 2.4, bins = 59 59 3 131s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 131s (1) pair gayberne, perpetual 131s attributes: half, newton on 131s pair build: half/bin/atomonly/newton 131s stencil: half/bin/2d 131s bin: standard 131s Setting up Verlet run ... 131s Unit style : lj 131s Current step : 0 131s Time step : 0.002 131s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 131s Step c_rot E_pair TotEng Press Volume 131s 0 2.2638298 0 2.394 0.04788 20000 131s 100 1.7507088 0 1.8513745 0.036020794 20558.953 131s 200 2.2704785 0 2.401031 0.046552815 20630.598 131s 300 1.862122 0 1.969194 0.042610426 18485.56 131s 400 2.1682285 -0.00033180079 2.2925698 0.06678177 13725.929 131s 500 1.9774167 -0.036688682 2.0543497 0.094267647 8509.1191 131s 600 2.0763332 -0.16712599 1.8943547 0.22454815 4686.7174 132s 700 2.2031637 -0.65167903 1.505138 0.69461503 2513.4867 132s 800 1.9076177 -1.6161536 0.26664447 1.2006561 1456.0639 132s 900 2.1654872 -3.098663 -1.0127947 2.3547814 962.22026 132s 1000 1.5697203 -4.290219 -2.7475676 2.2081575 780.13242 132s 1100 1.8639391 -4.8401808 -2.9839514 1.6435411 731.64362 132s 1200 2.148214 -4.559462 -2.3813692 1.2926066 761.90913 132s 1300 1.756056 -4.1199781 -2.4086474 0.55480157 830.59257 132s 1400 2.2520217 -3.9967432 -1.7251673 1.0840012 891.1767 132s 1500 1.7403402 -3.6959497 -1.9315447 0.69094077 980.77988 132s 1600 2.2198668 -3.40679 -1.2069637 0.83252434 1063.6253 132s 1700 1.8937862 -3.2995933 -1.4123785 0.15689916 1142.2427 132s 1800 2.0788606 -3.2740111 -1.2135595 0.8266016 1170.2029 132s 1900 2.0093512 -3.3688564 -1.3754478 0.50483334 1173.9086 132s 2000 1.9784272 -3.3396694 -1.3888911 0.80497674 1149.0282 132s Loop time of 0.480333 on 2 procs for 2000 steps with 400 atoms 132s 132s Performance: 719501.212 tau/day, 4163.780 timesteps/s, 1.666 Matom-step/s 132s 99.5% CPU use with 2 MPI tasks x 1 OpenMP threads 132s 132s MPI task timing breakdown: 132s Section | min time | avg time | max time |%varavg| %total 132s --------------------------------------------------------------- 132s Pair | 0.31047 | 0.32683 | 0.3432 | 2.9 | 68.04 132s Neigh | 0.010664 | 0.010862 | 0.01106 | 0.2 | 2.26 132s Comm | 0.022715 | 0.038924 | 0.055134 | 8.2 | 8.10 132s Output | 0.010744 | 0.010806 | 0.010867 | 0.1 | 2.25 132s Modify | 0.086977 | 0.088229 | 0.089481 | 0.4 | 18.37 132s Other | | 0.00468 | | | 0.97 132s 132s Nlocal: 200 ave 227 max 173 min 132s Histogram: 1 0 0 0 0 0 0 0 0 1 132s Nghost: 204 ave 206 max 202 min 132s Histogram: 1 0 0 0 0 0 0 0 0 1 132s Neighs: 1479.5 ave 1784 max 1175 min 132s Histogram: 1 0 0 0 0 0 0 0 0 1 132s 132s Total # of neighbors = 2959 132s Ave neighs/atom = 7.3975 132s Neighbor list builds = 348 132s Dangerous builds = 0 132s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 132s Setting up Verlet run ... 132s Unit style : lj 132s Current step : 2000 132s Time step : 0.002 132s Per MPI rank memory allocation (min/avg/max) = 6.9 | 6.9 | 6.9 Mbytes 132s Step c_rot E_pair TotEng Press Volume 132s 2000 1.9784272 -3.3396694 -1.3888911 0.80497674 1149.0282 132s 2100 1.9413656 -3.2989879 -1.344805 1.1581912 1149.0282 132s 2200 1.9590367 -3.3182662 -1.3678333 0.35910433 1149.0282 132s 2300 2.0250309 -3.3891121 -1.3644964 0.46285769 1149.0282 132s 2400 2.085533 -3.4551199 -1.3401904 0.61189864 1149.0282 132s 2500 2.077574 -3.4482359 -1.3340251 1.0190852 1149.0282 132s 2600 2.0840722 -3.4558292 -1.3514352 0.7597702 1149.0282 132s 2700 2.1174248 -3.4915978 -1.3720622 0.82088405 1149.0282 132s 2800 2.0120484 -3.3803498 -1.3351386 1.0472272 1149.0282 132s 2900 2.095772 -3.4692917 -1.3762115 0.6503267 1149.0282 132s 3000 2.005185 -3.3743963 -1.3771538 0.74858505 1149.0282 132s 3100 2.0635196 -3.4375558 -1.3792354 0.72379626 1149.0282 132s 3200 2.0131468 -3.3825952 -1.3703433 1.1087307 1149.0282 132s 3300 2.0467878 -3.4185419 -1.3532024 0.7400243 1149.0282 132s 3400 1.9629403 -3.328306 -1.3871127 0.78865882 1149.0282 132s 3500 2.0576813 -3.4288036 -1.3361687 0.72305492 1149.0282 132s 3600 1.9638286 -3.3256476 -1.3663274 0.83792378 1149.0282 132s 3700 1.9900562 -3.3535764 -1.3259922 0.4389563 1149.0282 133s 3800 1.9016735 -3.2598525 -1.3493967 0.56256005 1149.0282 133s 3900 2.002131 -3.3658151 -1.3768647 0.59924524 1149.0282 133s 4000 1.9750784 -3.33731 -1.3724406 0.70702486 1149.0282 133s Loop time of 0.631054 on 2 procs for 2000 steps with 400 atoms 133s 133s Performance: 547655.228 tau/day, 3169.301 timesteps/s, 1.268 Matom-step/s 133s 99.3% CPU use with 2 MPI tasks x 1 OpenMP threads 133s 133s MPI task timing breakdown: 133s Section | min time | avg time | max time |%varavg| %total 133s --------------------------------------------------------------- 133s Pair | 0.31179 | 0.41357 | 0.51535 | 15.8 | 65.54 133s Neigh | 0.0021212 | 0.0029245 | 0.0037277 | 1.5 | 0.46 133s Comm | 0.016382 | 0.1189 | 0.22142 | 29.7 | 18.84 133s Output | 0.012966 | 0.013007 | 0.013049 | 0.0 | 2.06 133s Modify | 0.048386 | 0.064091 | 0.079796 | 6.2 | 10.16 133s Other | | 0.01856 | | | 2.94 133s 133s Nlocal: 200 ave 242 max 158 min 133s Histogram: 1 0 0 0 0 0 0 0 0 1 133s Nghost: 186 ave 206 max 166 min 133s Histogram: 1 0 0 0 0 0 0 0 0 1 133s Neighs: 1548.5 ave 2045 max 1052 min 133s Histogram: 1 0 0 0 0 0 0 0 0 1 133s 133s Total # of neighbors = 3097 133s Ave neighs/atom = 7.7425 133s Neighbor list builds = 48 133s Dangerous builds = 0 133s Total wall time: 0:00:01 133s LAMMPS (4 Feb 2025) 134s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 134s using 1 OpenMP thread(s) per MPI task 134s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 134s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 134s 1 by 1 by 1 MPI processor grid 134s Created 400 atoms 134s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 134s create_atoms CPU = 0.000 seconds 134s Setting atom values ... 134s 48 settings made for type/fraction 134s Setting atom values ... 134s 352 settings made for mass 134s Setting atom values ... 134s 48 settings made for mass 134s Setting atom values ... 134s 352 settings made for shape 134s Setting atom values ... 134s 48 settings made for shape 134s Setting atom values ... 134s 400 settings made for quat/random 134s 352 atoms in group spheroid 134s 134s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 134s 134s Your simulation uses code contributions which should be cited: 134s - pair gayberne command: doi:10.1063/1.3058435 134s The log file lists these citations in BibTeX format. 134s 134s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 134s 134s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 134s Neighbor list info ... 134s update: every = 1 steps, delay = 0 steps, check = yes 134s max neighbors/atom: 2000, page size: 100000 134s master list distance cutoff = 4.8 134s ghost atom cutoff = 4.8 134s binsize = 2.4, bins = 59 59 3 134s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 134s (1) pair gayberne, perpetual 134s attributes: half, newton on 134s pair build: half/bin/atomonly/newton 134s stencil: half/bin/2d 134s bin: standard 134s Setting up Verlet run ... 134s Unit style : lj 134s Current step : 0 134s Time step : 0.002 134s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 134s Step c_rot E_pair TotEng Press Volume 134s 0 2.2638298 0 2.394 0.04788 20000 134s 100 1.7507088 0 1.8513745 0.036020794 20558.953 134s 200 2.2704785 0 2.401031 0.046552815 20630.598 134s 300 1.862122 0 1.969194 0.042610426 18485.56 134s 400 2.1682285 -0.00033180079 2.2925698 0.06678177 13725.929 134s 500 1.9774167 -0.036688682 2.0543497 0.094267647 8509.1191 134s 600 2.0763332 -0.16712599 1.8943547 0.22454815 4686.7174 134s 700 2.2031637 -0.65167903 1.505138 0.69461503 2513.4867 134s 800 1.9076177 -1.6161536 0.26664447 1.2006561 1456.0639 134s 900 2.1654872 -3.098663 -1.0127947 2.3547814 962.22026 134s 1000 1.5697203 -4.290219 -2.7475676 2.2081575 780.13242 134s 1100 1.8639391 -4.8401808 -2.9839514 1.6435411 731.64362 134s 1200 2.148214 -4.559462 -2.3813692 1.2926066 761.90913 134s 1300 1.756056 -4.1199781 -2.4086474 0.55480157 830.59257 134s 1400 2.2520217 -3.9967432 -1.7251673 1.0840012 891.1767 134s 1500 1.7403402 -3.6959497 -1.9315447 0.69094077 980.77988 134s 1600 2.2198668 -3.40679 -1.2069637 0.83252434 1063.6253 134s 1700 1.8937862 -3.2995933 -1.4123785 0.15689916 1142.2427 134s 1800 2.0788606 -3.2740111 -1.2135595 0.8266016 1170.2029 134s 1900 2.0093512 -3.3688564 -1.3754478 0.50483334 1173.9086 134s 2000 1.9784272 -3.3396694 -1.3888912 0.8049767 1149.0282 134s Loop time of 0.868318 on 1 procs for 2000 steps with 400 atoms 134s 134s Performance: 398010.950 tau/day, 2303.304 timesteps/s, 921.322 katom-step/s 134s 98.5% CPU use with 1 MPI tasks x 1 OpenMP threads 134s 134s MPI task timing breakdown: 134s Section | min time | avg time | max time |%varavg| %total 134s --------------------------------------------------------------- 134s Pair | 0.65242 | 0.65242 | 0.65242 | 0.0 | 75.14 135s Neigh | 0.021112 | 0.021112 | 0.021112 | 0.0 | 2.43 135s Comm | 0.0076312 | 0.0076312 | 0.0076312 | 0.0 | 0.88 135s Output | 0.018575 | 0.018575 | 0.018575 | 0.0 | 2.14 135s Modify | 0.16511 | 0.16511 | 0.16511 | 0.0 | 19.01 135s Other | | 0.003474 | | | 0.40 135s 135s Nlocal: 400 ave 400 max 400 min 135s Histogram: 1 0 0 0 0 0 0 0 0 0 135s Nghost: 255 ave 255 max 255 min 135s Histogram: 1 0 0 0 0 0 0 0 0 0 135s Neighs: 2959 ave 2959 max 2959 min 135s Histogram: 1 0 0 0 0 0 0 0 0 0 135s 135s Total # of neighbors = 2959 135s Ave neighs/atom = 7.3975 135s Neighbor list builds = 348 135s Dangerous builds = 0 135s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 135s Setting up Verlet run ... 135s Unit style : lj 135s Current step : 2000 135s Time step : 0.002 135s Per MPI rank memory allocation (min/avg/max) = 6.926 | 6.926 | 6.926 Mbytes 135s Step c_rot E_pair TotEng Press Volume 135s 2000 1.9784272 -3.3396694 -1.3888912 0.8049767 1149.0282 135s 2100 1.9413656 -3.2989879 -1.344805 1.1581912 1149.0282 135s 2200 1.9590368 -3.3182663 -1.3678333 0.35910425 1149.0282 135s 2300 2.0250308 -3.3891119 -1.3644964 0.46285779 1149.0282 135s 2400 2.0855331 -3.45512 -1.3401904 0.61189841 1149.0282 135s 2500 2.0775737 -3.4482356 -1.3340258 1.0190836 1149.0282 135s 2600 2.084072 -3.4558289 -1.3514359 0.75976918 1149.0282 135s 2700 2.1174308 -3.4916046 -1.3720664 0.82086811 1149.0282 135s 2800 2.0120441 -3.3803491 -1.3351469 1.047208 1149.0282 135s 2900 2.0957766 -3.4692999 -1.376208 0.65043335 1149.0282 135s 3000 2.00512 -3.3743288 -1.3771585 0.7487656 1149.0282 135s 3100 2.0635277 -3.4376031 -1.3792202 0.72375619 1149.0282 135s 3200 2.0130716 -3.3825107 -1.3702334 1.1098674 1149.0282 135s 3300 2.0463568 -3.4179583 -1.3534773 0.73871011 1149.0282 135s 3400 1.9649348 -3.3304023 -1.3860539 0.77548498 1149.0282 135s 3500 2.0501941 -3.4213612 -1.3373407 0.73278199 1149.0282 135s 3600 1.9881829 -3.3519947 -1.3795107 0.73402726 1149.0282 135s 3700 1.9994085 -3.3655341 -1.3599281 0.3911747 1149.0282 135s 3800 1.963869 -3.3264036 -1.3599099 0.50519594 1149.0282 135s 3900 1.9970107 -3.3624111 -1.3743885 1.0960718 1149.0282 135s 4000 2.0620245 -3.4315752 -1.3998675 0.54966642 1149.0282 135s Loop time of 0.992538 on 1 procs for 2000 steps with 400 atoms 135s 135s Performance: 348198.261 tau/day, 2015.036 timesteps/s, 806.014 katom-step/s 135s 98.5% CPU use with 1 MPI tasks x 1 OpenMP threads 135s 135s MPI task timing breakdown: 135s Section | min time | avg time | max time |%varavg| %total 135s --------------------------------------------------------------- 135s Pair | 0.83248 | 0.83248 | 0.83248 | 0.0 | 83.87 135s Neigh | 0.005773 | 0.005773 | 0.005773 | 0.0 | 0.58 135s Comm | 0.0082442 | 0.0082442 | 0.0082442 | 0.0 | 0.83 135s Output | 0.018763 | 0.018763 | 0.018763 | 0.0 | 1.89 135s Modify | 0.12391 | 0.12391 | 0.12391 | 0.0 | 12.48 135s Other | | 0.003367 | | | 0.34 135s 135s Nlocal: 400 ave 400 max 400 min 135s Histogram: 1 0 0 0 0 0 0 0 0 0 135s Nghost: 240 ave 240 max 240 min 135s Histogram: 1 0 0 0 0 0 0 0 0 0 135s Neighs: 3096 ave 3096 max 3096 min 135s Histogram: 1 0 0 0 0 0 0 0 0 0 135s 135s Total # of neighbors = 3096 135s Ave neighs/atom = 7.74 135s Neighbor list builds = 49 135s Dangerous builds = 0 135s Total wall time: 0:00:01 135s LAMMPS (4 Feb 2025) 135s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 135s using 1 OpenMP thread(s) per MPI task 135s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 135s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 135s 2 by 1 by 1 MPI processor grid 135s Created 400 atoms 135s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 135s create_atoms CPU = 0.000 seconds 135s Setting atom values ... 135s 48 settings made for type/fraction 135s Setting atom values ... 135s 352 settings made for mass 135s Setting atom values ... 135s 48 settings made for mass 135s Setting atom values ... 135s 352 settings made for shape 135s Setting atom values ... 135s 48 settings made for shape 135s Setting atom values ... 135s 400 settings made for quat/random 135s 352 atoms in group spheroid 135s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 135s Neighbor list info ... 135s update: every = 1 steps, delay = 0 steps, check = yes 135s max neighbors/atom: 2000, page size: 100000 135s master list distance cutoff = 4.8 135s ghost atom cutoff = 4.8 135s binsize = 2.4, bins = 59 59 3 135s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 135s (1) pair resquared, perpetual 135s attributes: half, newton on 135s pair build: half/bin/atomonly/newton 135s stencil: half/bin/2d 135s bin: standard 135s Setting up Verlet run ... 135s Unit style : lj 135s Current step : 0 135s Time step : 0.002 135s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 135s Step c_rot E_pair TotEng Press Volume 135s 0 2.2638298 0 2.394 0.04788 20000 135s 100 1.7507088 0 1.8513745 0.036020794 20558.953 135s 200 2.2704785 0 2.401031 0.046552815 20630.598 135s 300 1.862122 0 1.969194 0.042610426 18485.56 135s 400 2.1681648 -1.8025253e-05 2.2928162 0.066815262 13725.945 135s 500 1.9796533 0.011266483 2.1047446 0.10930999 8512.0962 135s 600 2.0381815 0.05520958 2.0768422 0.26593572 4768.9024 135s 700 2.2849402 0.25892126 2.4973312 1.1619 2735.0739 135s 800 1.4992869 0.22469187 1.6806361 1.2886286 1869.4273 135s 900 2.0547415 0.27250933 2.2614984 1.9975339 1555.2406 135s 1000 1.6926518 0.1458468 1.8205892 1.178465 1587.0462 135s 1100 2.2566757 0.10550322 2.3422895 0.95295253 1829.1762 135s 1200 1.7863944 0.052794099 1.8022676 0.50915281 2274.7198 135s 1300 2.1812168 0.052256594 2.1840651 0.45260879 2829.8629 135s 1400 1.9144744 0.03819752 1.9088776 0.32361118 3307.992 135s 1500 2.0960168 0.05105678 2.1054249 0.35884692 3466.0213 135s 1600 2.0672237 0.058048371 2.1030277 0.39835548 3217.6206 135s 1700 1.9868599 0.15133448 2.1051513 0.73337678 2689.3862 135s 1800 2.1036353 0.19793253 2.2839145 1.1035796 2171.6175 135s 1900 1.8399343 0.15530012 2.0123427 1.0727888 1823.0596 135s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 135s Loop time of 0.90763 on 2 procs for 2000 steps with 400 atoms 135s 135s Performance: 380771.750 tau/day, 2203.540 timesteps/s, 881.416 katom-step/s 135s 90.7% CPU use with 2 MPI tasks x 1 OpenMP threads 135s 135s MPI task timing breakdown: 135s Section | min time | avg time | max time |%varavg| %total 135s --------------------------------------------------------------- 135s Pair | 0.59434 | 0.65818 | 0.72202 | 7.9 | 72.52 135s Neigh | 0.011499 | 0.012829 | 0.014158 | 1.2 | 1.41 135s Comm | 0.036146 | 0.10152 | 0.16689 | 20.5 | 11.19 135s Output | 0.014891 | 0.014957 | 0.015024 | 0.1 | 1.65 135s Modify | 0.10106 | 0.10711 | 0.11316 | 1.8 | 11.80 135s Other | | 0.01303 | | | 1.44 135s 135s Nlocal: 200 ave 206 max 194 min 135s Histogram: 1 0 0 0 0 0 0 0 0 1 135s Nghost: 166 ave 172 max 160 min 135s Histogram: 1 0 0 0 0 0 0 0 0 1 135s Neighs: 990.5 ave 1028 max 953 min 135s Histogram: 1 0 0 0 0 0 0 0 0 1 135s 135s Total # of neighbors = 1981 135s Ave neighs/atom = 4.9525 135s Neighbor list builds = 410 135s Dangerous builds = 0 135s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 135s Setting up Verlet run ... 135s Unit style : lj 135s Current step : 2000 135s Time step : 0.002 135s Per MPI rank memory allocation (min/avg/max) = 6.89 | 6.89 | 6.89 Mbytes 135s Step c_rot E_pair TotEng Press Volume 135s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 136s 2100 2.2262008 0.15960391 2.3610768 1.3398437 1625.5704 136s 2200 2.1759925 0.21281154 2.4217703 1.547288 1625.5704 136s 2300 2.2426044 0.14235411 2.3796419 1.3063731 1625.5704 136s 2400 2.1909516 0.1968467 2.3277677 1.5131631 1625.5704 136s 2500 2.1396456 0.25118294 2.3450649 1.7231479 1625.5704 136s 2600 2.1724989 0.21652796 2.36624 1.5785682 1625.5704 136s 2700 2.1347133 0.2565462 2.3819962 1.7939756 1625.5704 136s 2800 2.2187273 0.16767707 2.3890091 1.3803388 1625.5704 136s 2900 2.2653117 0.11841424 2.358481 1.1423479 1625.5704 136s 3000 2.1965681 0.19125616 2.3687823 1.55014 1625.5704 136s 3100 2.1970501 0.19052613 2.3694703 1.4706426 1625.5704 136s 3200 2.1661439 0.22324214 2.3939177 1.619691 1625.5704 136s 3300 2.1298288 0.26157991 2.3997036 1.8700501 1625.5704 136s 3400 2.1293647 0.26220526 2.373699 1.7332686 1625.5704 137s 3500 2.1835494 0.20483304 2.4031724 1.5471088 1625.5704 137s 3600 2.1875445 0.20049079 2.4159533 1.5995253 1625.5704 137s 3700 2.1186666 0.27351639 2.4141913 1.9057949 1625.5704 137s 3800 2.1752149 0.2136072 2.3067948 1.5705518 1625.5704 137s 3900 2.1976482 0.18993383 2.4017837 1.4844827 1625.5704 137s 4000 2.1788977 0.20960933 2.3437572 1.576965 1625.5704 137s Loop time of 1.35269 on 2 procs for 2000 steps with 400 atoms 137s 137s Performance: 255491.711 tau/day, 1478.540 timesteps/s, 591.416 katom-step/s 137s 97.0% CPU use with 2 MPI tasks x 1 OpenMP threads 137s 137s MPI task timing breakdown: 137s Section | min time | avg time | max time |%varavg| %total 137s --------------------------------------------------------------- 137s Pair | 1.1463 | 1.1907 | 1.235 | 4.1 | 88.02 137s Neigh | 0.0022724 | 0.0024265 | 0.0025806 | 0.3 | 0.18 137s Comm | 0.030833 | 0.075988 | 0.12114 | 16.4 | 5.62 137s Output | 0.017011 | 0.017098 | 0.017186 | 0.1 | 1.26 137s Modify | 0.057722 | 0.05993 | 0.062137 | 0.9 | 4.43 137s Other | | 0.006566 | | | 0.49 137s 137s Nlocal: 200 ave 207 max 193 min 137s Histogram: 1 0 0 0 0 0 0 0 0 1 137s Nghost: 162.5 ave 165 max 160 min 137s Histogram: 1 0 0 0 0 0 0 0 0 1 137s Neighs: 966 ave 1009 max 923 min 137s Histogram: 1 0 0 0 0 0 0 0 0 1 137s 137s Total # of neighbors = 1932 137s Ave neighs/atom = 4.83 137s Neighbor list builds = 50 137s Dangerous builds = 0 137s Total wall time: 0:00:02 137s LAMMPS (4 Feb 2025) 138s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 139s using 1 OpenMP thread(s) per MPI task 139s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 139s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 139s 1 by 1 by 1 MPI processor grid 139s Created 400 atoms 139s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 139s create_atoms CPU = 0.000 seconds 139s Setting atom values ... 139s 48 settings made for type/fraction 139s Setting atom values ... 139s 352 settings made for mass 139s Setting atom values ... 139s 48 settings made for mass 139s Setting atom values ... 139s 352 settings made for shape 139s Setting atom values ... 139s 48 settings made for shape 139s Setting atom values ... 139s 400 settings made for quat/random 139s 352 atoms in group spheroid 139s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 139s Neighbor list info ... 139s update: every = 1 steps, delay = 0 steps, check = yes 139s max neighbors/atom: 2000, page size: 100000 139s master list distance cutoff = 4.8 139s ghost atom cutoff = 4.8 139s binsize = 2.4, bins = 59 59 3 139s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 139s (1) pair resquared, perpetual 139s attributes: half, newton on 139s pair build: half/bin/atomonly/newton 139s stencil: half/bin/2d 139s bin: standard 139s Setting up Verlet run ... 139s Unit style : lj 139s Current step : 0 139s Time step : 0.002 139s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 139s Step c_rot E_pair TotEng Press Volume 139s 0 2.2638298 0 2.394 0.04788 20000 139s 100 1.7507088 0 1.8513745 0.036020794 20558.953 139s 200 2.2704785 0 2.401031 0.046552815 20630.598 139s 300 1.862122 0 1.969194 0.042610426 18485.56 139s 400 2.1681648 -1.8025253e-05 2.2928162 0.066815262 13725.945 139s 500 1.9796533 0.011266483 2.1047446 0.10930999 8512.0962 139s 600 2.0381815 0.05520958 2.0768422 0.26593572 4768.9024 139s 700 2.2849402 0.25892126 2.4973312 1.1619 2735.0739 139s 800 1.4992869 0.22469187 1.6806361 1.2886286 1869.4273 139s 900 2.0547415 0.27250933 2.2614984 1.9975339 1555.2406 139s 1000 1.6926518 0.1458468 1.8205892 1.178465 1587.0462 139s 1100 2.2566757 0.10550322 2.3422895 0.95295253 1829.1762 139s 1200 1.7863944 0.052794099 1.8022676 0.50915281 2274.7198 139s 1300 2.1812168 0.052256594 2.1840651 0.45260879 2829.8629 139s 1400 1.9144744 0.03819752 1.9088776 0.32361118 3307.992 139s 1500 2.0960168 0.05105678 2.1054249 0.35884692 3466.0213 139s 1600 2.0672237 0.058048371 2.1030277 0.39835548 3217.6206 139s 1700 1.9868599 0.15133448 2.1051513 0.73337678 2689.3862 139s 1800 2.1036353 0.19793253 2.2839145 1.1035796 2171.6175 139s 1900 1.8399343 0.15530012 2.0123427 1.0727888 1823.0596 139s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 139s Loop time of 1.39267 on 1 procs for 2000 steps with 400 atoms 139s 139s Performance: 248156.822 tau/day, 1436.093 timesteps/s, 574.437 katom-step/s 139s 99.4% CPU use with 1 MPI tasks x 1 OpenMP threads 139s 139s MPI task timing breakdown: 139s Section | min time | avg time | max time |%varavg| %total 139s --------------------------------------------------------------- 139s Pair | 1.1774 | 1.1774 | 1.1774 | 0.0 | 84.54 139s Neigh | 0.021154 | 0.021154 | 0.021154 | 0.0 | 1.52 139s Comm | 0.0064207 | 0.0064207 | 0.0064207 | 0.0 | 0.46 139s Output | 0.018823 | 0.018823 | 0.018823 | 0.0 | 1.35 139s Modify | 0.1655 | 0.1655 | 0.1655 | 0.0 | 11.88 141s Other | | 0.003387 | | | 0.24 141s 141s Nlocal: 400 ave 400 max 400 min 141s Histogram: 1 0 0 0 0 0 0 0 0 0 141s Nghost: 214 ave 214 max 214 min 141s Histogram: 1 0 0 0 0 0 0 0 0 0 141s Neighs: 1981 ave 1981 max 1981 min 141s Histogram: 1 0 0 0 0 0 0 0 0 0 141s 141s Total # of neighbors = 1981 141s Ave neighs/atom = 4.9525 141s Neighbor list builds = 410 141s Dangerous builds = 0 141s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 141s Setting up Verlet run ... 141s Unit style : lj 141s Current step : 2000 141s Time step : 0.002 141s Per MPI rank memory allocation (min/avg/max) = 6.917 | 6.917 | 6.917 Mbytes 141s Step c_rot E_pair TotEng Press Volume 141s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 141s 2100 2.2262008 0.15960391 2.3610768 1.3398437 1625.5704 141s 2200 2.1759925 0.21281154 2.4217703 1.547288 1625.5704 141s 2300 2.2426044 0.14235411 2.3796419 1.3063731 1625.5704 141s 2400 2.1909516 0.1968467 2.3277677 1.5131631 1625.5704 141s 2500 2.1396456 0.25118295 2.3450649 1.7231479 1625.5704 141s 2600 2.1724989 0.21652796 2.3662399 1.5785682 1625.5704 141s 2700 2.1347133 0.25654622 2.3819962 1.7939757 1625.5704 141s 2800 2.2187273 0.16767709 2.3890091 1.3803389 1625.5704 141s 2900 2.2653117 0.1184142 2.3584809 1.1423477 1625.5704 141s 3000 2.1965682 0.19125607 2.3687823 1.5501394 1625.5704 141s 3100 2.1970503 0.19052592 2.3694702 1.4706415 1625.5704 141s 3200 2.1661438 0.22324217 2.393918 1.619691 1625.5704 141s 3300 2.1298268 0.26158212 2.3997056 1.8700704 1625.5704 141s 3400 2.129366 0.26220387 2.3736989 1.7332623 1625.5704 141s 3500 2.1835467 0.20483593 2.4031735 1.5471227 1625.5704 141s 3600 2.187532 0.20050401 2.4159602 1.5996363 1625.5704 141s 3700 2.1186808 0.2735013 2.4141937 1.9057216 1625.5704 141s 3800 2.1752481 0.21357202 2.3067618 1.5703983 1625.5704 141s 3900 2.1976728 0.18990792 2.4017814 1.4843601 1625.5704 141s 4000 2.1786303 0.20989248 2.3438733 1.578595 1625.5704 141s Loop time of 2.47511 on 1 procs for 2000 steps with 400 atoms 141s 141s Performance: 139630.278 tau/day, 808.046 timesteps/s, 323.218 katom-step/s 141s 99.6% CPU use with 1 MPI tasks x 1 OpenMP threads 141s 141s MPI task timing breakdown: 141s Section | min time | avg time | max time |%varavg| %total 141s --------------------------------------------------------------- 141s Pair | 2.3215 | 2.3215 | 2.3215 | 0.0 | 93.79 141s Neigh | 0.0045326 | 0.0045326 | 0.0045326 | 0.0 | 0.18 141s Comm | 0.0067559 | 0.0067559 | 0.0067559 | 0.0 | 0.27 141s Output | 0.019846 | 0.019846 | 0.019846 | 0.0 | 0.80 141s Modify | 0.11922 | 0.11922 | 0.11922 | 0.0 | 4.82 141s Other | | 0.003239 | | | 0.13 141s 141s Nlocal: 400 ave 400 max 400 min 141s Histogram: 1 0 0 0 0 0 0 0 0 0 141s Nghost: 208 ave 208 max 208 min 141s Histogram: 1 0 0 0 0 0 0 0 0 0 141s Neighs: 1932 ave 1932 max 1932 min 141s Histogram: 1 0 0 0 0 0 0 0 0 0 141s 141s Total # of neighbors = 1932 141s Ave neighs/atom = 4.83 141s Neighbor list builds = 50 141s Dangerous builds = 0 141s Total wall time: 0:00:03 141s run: OK 141s autopkgtest [18:58:37]: test ellipse: -----------------------] 142s ellipse PASS 142s autopkgtest [18:58:38]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 142s autopkgtest [18:58:38]: test flow: preparing testbed 142s Reading package lists... 142s Building dependency tree... 142s Reading state information... 142s Solving dependencies... 142s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 143s autopkgtest [18:58:39]: test flow: [----------------------- 143s LAMMPS (4 Feb 2025) 143s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 143s using 1 OpenMP thread(s) per MPI task 143s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 143s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 143s 2 by 1 by 1 MPI processor grid 143s Created 420 atoms 143s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 143s create_atoms CPU = 0.000 seconds 143s 60 atoms in group lower 143s 60 atoms in group upper 143s 120 atoms in group boundary 143s 300 atoms in group flow 143s Setting atom values ... 143s 60 settings made for type 143s Setting atom values ... 143s 60 settings made for type 143s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 143s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 143s Neighbor list info ... 143s update: every = 1 steps, delay = 5 steps, check = yes 143s max neighbors/atom: 2000, page size: 100000 143s master list distance cutoff = 1.42246 143s ghost atom cutoff = 1.42246 143s binsize = 0.71123, bins = 37 32 1 143s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 143s (1) pair lj/cut, perpetual 143s attributes: half, newton on 143s pair build: half/bin/atomonly/newton 143s stencil: half/bin/2d 143s bin: standard 143s Setting up Verlet run ... 143s Unit style : lj 143s Current step : 0 143s Time step : 0.003 143s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 143s Step Temp E_pair E_mol TotEng Press Volume 143s 0 1 0 0 0.71190476 0.52314537 571.54286 143s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 143s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 143s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 143s 2000 1 -0.41053025 0 0.30137451 2.8651905 571.54286 143s 2500 1.1226126 -0.37018872 0 0.42900451 2.9459225 571.54286 143s 3000 1 -0.40149829 0 0.31040647 2.7056256 571.54286 143s 3500 1.071429 -0.46774125 0 0.29501417 2.5582838 571.54286 143s 4000 1 -0.39054248 0 0.32136228 2.4314528 571.54286 143s 4500 1.029458 -0.40311018 0 0.32976584 2.5012442 571.54286 143s 5000 1 -0.44252019 0 0.26938457 2.3566317 571.54286 143s 5500 1.0715559 -0.4771158 0 0.28572997 2.420979 571.54286 143s 6000 1 -0.42490153 0 0.28700323 2.4032097 571.54286 143s 6500 1.1729217 -0.43515146 0 0.39985708 2.3670704 571.54286 143s 7000 1 -0.4539943 0 0.25791046 2.36148 571.54286 143s 7500 1.1676524 -0.40784405 0 0.42341328 2.699336 571.54286 144s 8000 1 -0.37626352 0 0.33564124 2.8174026 571.54286 144s 8500 1.1583539 -0.41258281 0 0.41205487 2.6617634 571.54286 144s 9000 1 -0.42918407 0 0.28272069 2.3090418 571.54286 144s 9500 1.0432103 -0.39042315 0 0.3522432 2.6910698 571.54286 144s 10000 1 -0.4676995 0 0.24420526 2.3898708 571.54286 144s Loop time of 0.16222 on 2 procs for 10000 steps with 420 atoms 144s 144s Performance: 15978320.526 tau/day, 61644.755 timesteps/s, 25.891 Matom-step/s 144s 99.2% CPU use with 2 MPI tasks x 1 OpenMP threads 144s 144s MPI task timing breakdown: 144s Section | min time | avg time | max time |%varavg| %total 144s --------------------------------------------------------------- 144s Pair | 0.049759 | 0.051208 | 0.052656 | 0.6 | 31.57 144s Neigh | 0.022536 | 0.023004 | 0.023471 | 0.3 | 14.18 144s Comm | 0.050582 | 0.053569 | 0.056556 | 1.3 | 33.02 144s Output | 0.00012275 | 0.00027182 | 0.0004209 | 0.0 | 0.17 144s Modify | 0.021976 | 0.02311 | 0.024245 | 0.7 | 14.25 144s Other | | 0.01106 | | | 6.82 144s 144s Nlocal: 210 ave 214 max 206 min 144s Histogram: 1 0 0 0 0 0 0 0 0 1 144s Nghost: 51 ave 52 max 50 min 144s Histogram: 1 0 0 0 0 0 0 0 0 1 144s Neighs: 472 ave 494 max 450 min 144s Histogram: 1 0 0 0 0 0 0 0 0 1 144s 144s Total # of neighbors = 944 144s Ave neighs/atom = 2.247619 144s Neighbor list builds = 994 144s Dangerous builds = 0 144s Total wall time: 0:00:00 144s LAMMPS (4 Feb 2025) 144s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 144s using 1 OpenMP thread(s) per MPI task 144s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 144s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 144s 1 by 1 by 1 MPI processor grid 144s Created 420 atoms 144s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 144s create_atoms CPU = 0.000 seconds 144s 60 atoms in group lower 144s 60 atoms in group upper 144s 120 atoms in group boundary 144s 300 atoms in group flow 144s Setting atom values ... 144s 60 settings made for type 144s Setting atom values ... 144s 60 settings made for type 144s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 144s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 144s Neighbor list info ... 144s update: every = 1 steps, delay = 5 steps, check = yes 144s max neighbors/atom: 2000, page size: 100000 144s master list distance cutoff = 1.42246 144s ghost atom cutoff = 1.42246 144s binsize = 0.71123, bins = 37 32 1 144s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 144s (1) pair lj/cut, perpetual 144s attributes: half, newton on 144s pair build: half/bin/atomonly/newton 144s stencil: half/bin/2d 144s bin: standard 144s Setting up Verlet run ... 144s Unit style : lj 144s Current step : 0 144s Time step : 0.003 144s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 144s Step Temp E_pair E_mol TotEng Press Volume 144s 0 1 0 0 0.71190476 0.52314537 571.54286 144s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 144s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 144s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 144s 2000 1 -0.40814262 0 0.30376214 2.9229597 571.54286 144s 2500 1.193035 -0.38493995 0 0.46438736 2.8340607 571.54286 144s 3000 1 -0.45564537 0 0.2562594 2.7506498 571.54286 144s 3500 1.0626882 -0.45013361 0 0.30639918 2.5530157 571.54286 144s 4000 1 -0.39613722 0 0.31576755 2.4669827 571.54286 144s 4500 1.0832856 -0.43003699 0 0.34115919 2.2569491 571.54286 144s 5000 1 -0.42733451 0 0.28457025 2.4685826 571.54286 144s 5500 1.0413391 -0.39346589 0 0.34786835 2.6348761 571.54286 144s 6000 1 -0.42845926 0 0.2834455 2.4988125 571.54286 144s 6500 1.0890296 -0.43775517 0 0.33753016 2.4384217 571.54286 144s 7000 1 -0.46023483 0 0.25166993 2.4429964 571.54286 144s 7500 1.0644341 -0.45175861 0 0.3060171 2.4324515 571.54286 144s 8000 1 -0.43920605 0 0.27269871 2.6469713 571.54286 144s 8500 1.0647184 -0.45399641 0 0.3039817 2.5748114 571.54286 144s 9000 1 -0.46453995 0 0.24736482 2.6591355 571.54286 144s 9500 1.0123 -0.44029216 0 0.28036906 2.413597 571.54286 144s 10000 1 -0.43826448 0 0.27364028 2.3699706 571.54286 144s Loop time of 0.200555 on 1 procs for 10000 steps with 420 atoms 144s 144s Performance: 12924143.321 tau/day, 49861.664 timesteps/s, 20.942 Matom-step/s 144s 97.5% CPU use with 1 MPI tasks x 1 OpenMP threads 144s 144s MPI task timing breakdown: 144s Section | min time | avg time | max time |%varavg| %total 144s --------------------------------------------------------------- 144s Pair | 0.10034 | 0.10034 | 0.10034 | 0.0 | 50.03 144s Neigh | 0.043212 | 0.043212 | 0.043212 | 0.0 | 21.55 144s Comm | 0.0049115 | 0.0049115 | 0.0049115 | 0.0 | 2.45 144s Output | 0.00017267 | 0.00017267 | 0.00017267 | 0.0 | 0.09 144s Modify | 0.041482 | 0.041482 | 0.041482 | 0.0 | 20.68 144s Other | | 0.01043 | | | 5.20 144s 144s Nlocal: 420 ave 420 max 420 min 144s Histogram: 1 0 0 0 0 0 0 0 0 0 144s Nghost: 50 ave 50 max 50 min 144s Histogram: 1 0 0 0 0 0 0 0 0 0 144s Neighs: 946 ave 946 max 946 min 144s Histogram: 1 0 0 0 0 0 0 0 0 0 144s 144s Total # of neighbors = 946 144s Ave neighs/atom = 2.252381 144s Neighbor list builds = 979 144s Dangerous builds = 0 144s Total wall time: 0:00:00 144s LAMMPS (4 Feb 2025) 144s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 144s using 1 OpenMP thread(s) per MPI task 144s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 144s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 144s 2 by 1 by 1 MPI processor grid 144s Created 420 atoms 144s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 144s create_atoms CPU = 0.000 seconds 144s 60 atoms in group lower 144s 60 atoms in group upper 144s 120 atoms in group boundary 144s 300 atoms in group flow 144s Setting atom values ... 144s 60 settings made for type 144s Setting atom values ... 144s 60 settings made for type 144s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 144s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 144s Neighbor list info ... 144s update: every = 1 steps, delay = 5 steps, check = yes 144s max neighbors/atom: 2000, page size: 100000 144s master list distance cutoff = 1.42246 144s ghost atom cutoff = 1.42246 144s binsize = 0.71123, bins = 37 32 1 144s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 144s (1) pair lj/cut, perpetual 144s attributes: half, newton on 144s pair build: half/bin/atomonly/newton 144s stencil: half/bin/2d 144s bin: standard 144s Setting up Verlet run ... 144s Unit style : lj 144s Current step : 0 144s Time step : 0.003 144s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 144s Step Temp E_pair E_mol TotEng Press Volume 144s 0 1 0 0 0.71190476 0.52314537 571.54286 144s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 144s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 144s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 144s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 144s 2500 1.2272957 -0.42381901 0 0.44989865 1.4544608 570.15856 144s 3000 1 -0.4914342 0 0.22047056 1.534595 554.98633 144s 3500 1.2444794 -0.59760758 0 0.2883432 1.8754993 537.01599 144s 4000 1 -0.69890444 0 0.013000318 2.1406234 521.49815 144s 4500 1.2188346 -0.74991278 0 0.1177814 2.7508733 507.73977 144s 5000 1 -0.7445329 0 -0.032628135 3.1054873 501.68859 144s 5500 1.1836415 -0.76775125 0 0.074888789 2.6990153 506.01181 144s 6000 1 -0.7575268 0 -0.04562204 2.4858442 508.26846 144s 6500 1.2076032 -0.68884147 0 0.17085699 2.3143206 512.291 144s 7000 1 -0.66241571 0 0.049489051 2.0686009 516.38744 144s 7500 1.2123711 -0.71994819 0 0.14314459 2.1753937 513.88371 144s 8000 1 -0.71001477 0 0.0018899921 2.0630419 509.80458 144s 8500 1.1991563 -0.78355267 0 0.070132412 2.493712 504.22835 144s 9000 1 -0.72719051 0 -0.015285749 2.27793 505.75742 144s 9500 1.2073739 -0.76518329 0 0.094351911 2.5653732 503.29071 144s 10000 1 -0.78638614 0 -0.074481378 2.3564468 504.38491 144s Loop time of 0.178718 on 2 procs for 10000 steps with 420 atoms 144s 144s Performance: 14503286.200 tau/day, 55954.036 timesteps/s, 23.501 Matom-step/s 144s 98.9% CPU use with 2 MPI tasks x 1 OpenMP threads 144s 144s MPI task timing breakdown: 144s Section | min time | avg time | max time |%varavg| %total 144s --------------------------------------------------------------- 144s Pair | 0.056758 | 0.057722 | 0.058687 | 0.4 | 32.30 144s Neigh | 0.013249 | 0.013259 | 0.013269 | 0.0 | 7.42 144s Comm | 0.047243 | 0.048205 | 0.049168 | 0.4 | 26.97 144s Output | 0.00013647 | 0.00034188 | 0.00054728 | 0.0 | 0.19 144s Modify | 0.048197 | 0.048512 | 0.048826 | 0.1 | 27.14 144s Other | | 0.01068 | | | 5.97 144s 144s Nlocal: 210 ave 211 max 209 min 144s Histogram: 1 0 0 0 0 0 0 0 0 1 144s Nghost: 50 ave 51 max 49 min 144s Histogram: 1 0 0 0 0 0 0 0 0 1 144s Neighs: 563.5 ave 569 max 558 min 144s Histogram: 1 0 0 0 0 0 0 0 0 1 144s 144s Total # of neighbors = 1127 144s Ave neighs/atom = 2.6833333 144s Neighbor list builds = 560 144s Dangerous builds = 0 144s Total wall time: 0:00:00 144s LAMMPS (4 Feb 2025) 144s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 144s using 1 OpenMP thread(s) per MPI task 144s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 144s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 144s 1 by 1 by 1 MPI processor grid 144s Created 420 atoms 144s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 144s create_atoms CPU = 0.000 seconds 144s 60 atoms in group lower 144s 60 atoms in group upper 144s 120 atoms in group boundary 144s 300 atoms in group flow 144s Setting atom values ... 144s 60 settings made for type 144s Setting atom values ... 144s 60 settings made for type 144s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 144s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 144s Neighbor list info ... 144s update: every = 1 steps, delay = 5 steps, check = yes 144s max neighbors/atom: 2000, page size: 100000 144s master list distance cutoff = 1.42246 144s ghost atom cutoff = 1.42246 144s binsize = 0.71123, bins = 37 32 1 144s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 144s (1) pair lj/cut, perpetual 144s attributes: half, newton on 144s pair build: half/bin/atomonly/newton 144s stencil: half/bin/2d 144s bin: standard 144s Setting up Verlet run ... 144s Unit style : lj 144s Current step : 0 144s Time step : 0.003 144s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 144s Step Temp E_pair E_mol TotEng Press Volume 144s 0 1 0 0 0.71190476 0.52314537 571.54286 144s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 144s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 144s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 144s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 144s 2500 1.2236323 -0.40128447 0 0.46982521 1.427689 570.03729 144s 3000 1 -0.48849374 0 0.22341102 1.5091345 553.64637 144s 3500 1.2404604 -0.63017693 0 0.25291274 1.7681156 535.22588 144s 4000 1 -0.71303348 0 -0.001128721 2.2083475 516.7312 144s 4500 1.2316246 -0.77421749 0 0.10258194 2.5788522 503.1817 144s 5000 1 -0.7999552 0 -0.088050433 3.1546066 498.48431 144s 5500 1.2347442 -0.74592478 0 0.13309548 2.695455 502.87799 144s 6000 1 -0.67044678 0 0.041457981 2.2074541 513.82275 144s 6500 1.2102356 -0.63751404 0 0.22405846 1.9921588 517.21223 144s 7000 1 -0.65043667 0 0.061468095 1.8816222 517.22883 144s 7500 1.2366099 -0.68011129 0 0.20023717 2.0387578 515.33777 144s 8000 1 -0.72046833 0 -0.0085635721 2.1380846 510.42066 144s 8500 1.2219154 -0.79786917 0 0.072018214 2.2824348 503.99311 144s 9000 1 -0.78517366 0 -0.073268895 2.6920699 500.15016 144s 9500 1.1934208 -0.7468438 0 0.10275813 2.4971524 501.17896 144s 10000 1 -0.67478993 0 0.037114833 2.3681765 504.37054 144s Loop time of 0.233376 on 1 procs for 10000 steps with 420 atoms 144s 144s Performance: 11106530.953 tau/day, 42849.271 timesteps/s, 17.997 Matom-step/s 144s 98.6% CPU use with 1 MPI tasks x 1 OpenMP threads 144s 144s MPI task timing breakdown: 144s Section | min time | avg time | max time |%varavg| %total 144s --------------------------------------------------------------- 144s Pair | 0.11502 | 0.11502 | 0.11502 | 0.0 | 49.29 144s Neigh | 0.025534 | 0.025534 | 0.025534 | 0.0 | 10.94 144s Comm | 0.0041044 | 0.0041044 | 0.0041044 | 0.0 | 1.76 144s Output | 0.0002469 | 0.0002469 | 0.0002469 | 0.0 | 0.11 144s Modify | 0.07876 | 0.07876 | 0.07876 | 0.0 | 33.75 144s Other | | 0.009707 | | | 4.16 144s 144s Nlocal: 420 ave 420 max 420 min 144s Histogram: 1 0 0 0 0 0 0 0 0 0 144s Nghost: 51 ave 51 max 51 min 144s Histogram: 1 0 0 0 0 0 0 0 0 0 144s Neighs: 1150 ave 1150 max 1150 min 144s Histogram: 1 0 0 0 0 0 0 0 0 0 144s 144s Total # of neighbors = 1150 144s Ave neighs/atom = 2.7380952 144s Neighbor list builds = 563 144s Dangerous builds = 0 144s Total wall time: 0:00:00 144s run: OK 145s autopkgtest [18:58:41]: test flow: -----------------------] 145s autopkgtest [18:58:41]: test flow: - - - - - - - - - - results - - - - - - - - - - 145s flow PASS 145s autopkgtest [18:58:41]: test friction: preparing testbed 146s Reading package lists... 146s Building dependency tree... 146s Reading state information... 146s Solving dependencies... 146s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 147s autopkgtest [18:58:43]: test friction: [----------------------- 147s LAMMPS (4 Feb 2025) 147s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 147s using 1 OpenMP thread(s) per MPI task 147s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 147s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 147s 2 by 1 by 1 MPI processor grid 147s Created 750 atoms 147s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 147s create_atoms CPU = 0.000 seconds 147s Created 750 atoms 147s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 147s create_atoms CPU = 0.000 seconds 147s Created 112 atoms 147s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 147s create_atoms CPU = 0.000 seconds 147s Created 112 atoms 147s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 147s create_atoms CPU = 0.000 seconds 147s 750 atoms in group lo 147s 862 atoms in group lo 147s 750 atoms in group hi 147s 862 atoms in group hi 147s 150 atoms in group lo-fixed 147s 150 atoms in group hi-fixed 147s 300 atoms in group boundary 147s 1424 atoms in group mobile 147s Setting atom values ... 147s 150 settings made for type 147s Setting atom values ... 147s 150 settings made for type 147s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 147s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 147s Neighbor list info ... 147s update: every = 1 steps, delay = 5 steps, check = yes 147s max neighbors/atom: 2000, page size: 100000 147s master list distance cutoff = 2.8 147s ghost atom cutoff = 2.8 147s binsize = 1.4, bins = 41 31 1 147s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 147s (1) pair lj/cut, perpetual 147s attributes: half, newton on 147s pair build: half/bin/atomonly/newton 147s stencil: half/bin/2d 147s bin: standard 147s Setting up Verlet run ... 147s Unit style : lj 147s Current step : 0 147s Time step : 0.0025 147s Per MPI rank memory allocation (min/avg/max) = 3.05 | 3.05 | 3.05 Mbytes 147s Step Temp E_pair E_mol TotEng Press Volume 147s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 147s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 147s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 147s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 147s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 148s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 148s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314788 2444.9333 148s 7000 0.11587085 -3.0413277 0 -2.9935075 -0.37543775 2444.9333 148s 8000 0.1 -3.029647 0 -2.9883767 -0.41884104 2444.9333 148s 9000 0.11588457 -3.0253422 0 -2.9775163 -0.43584065 2444.9333 148s 10000 0.1 -3.0293042 0 -2.9880339 -0.36809832 2444.9333 148s 11000 0.11830962 -3.029318 0 -2.9804913 -0.44710474 2444.9333 148s 12000 0.1 -3.0283785 0 -2.9871082 -0.20225766 2444.9333 149s 13000 0.11646107 -3.0351824 0 -2.9871185 -0.46506235 2444.9333 149s 14000 0.11264391 -3.0399048 0 -2.9934163 -0.23851225 2444.9333 149s 15000 0.11397557 -3.0400714 0 -2.9930333 -0.27494778 2444.9333 149s 16000 0.11527553 -3.0423634 0 -2.9947889 -0.27314794 2444.9333 149s 17000 0.11820003 -3.0419531 0 -2.9931715 -0.39533728 2444.9333 149s 18000 0.11165087 -3.0494285 0 -3.0033499 -0.25447692 2444.9333 149s 19000 0.11450729 -3.0488755 0 -3.0016179 -0.27183418 2444.9333 149s 20000 0.1090499 -3.0490281 0 -3.0040229 -0.39612969 2444.9333 149s Loop time of 2.45562 on 2 procs for 20000 steps with 1724 atoms 149s 149s Performance: 1759230.993 tau/day, 8144.588 timesteps/s, 14.041 Matom-step/s 149s 99.3% CPU use with 2 MPI tasks x 1 OpenMP threads 149s 149s MPI task timing breakdown: 149s Section | min time | avg time | max time |%varavg| %total 149s --------------------------------------------------------------- 149s Pair | 1.6338 | 1.792 | 1.9502 | 11.8 | 72.97 149s Neigh | 0.13551 | 0.14726 | 0.15901 | 3.1 | 6.00 149s Comm | 0.10292 | 0.27524 | 0.44756 | 32.8 | 11.21 149s Output | 0.00039641 | 0.0012432 | 0.0020899 | 2.4 | 0.05 149s Modify | 0.16345 | 0.17528 | 0.1871 | 2.8 | 7.14 149s Other | | 0.06462 | | | 2.63 149s 149s Nlocal: 862 ave 874 max 850 min 149s Histogram: 1 0 0 0 0 0 0 0 0 1 149s Nghost: 165.5 ave 166 max 165 min 149s Histogram: 1 0 0 0 0 0 0 0 0 1 149s Neighs: 7198 ave 7283 max 7113 min 149s Histogram: 1 0 0 0 0 0 0 0 0 1 149s 149s Total # of neighbors = 14396 149s Ave neighs/atom = 8.350348 149s Neighbor list builds = 720 149s Dangerous builds = 0 149s Total wall time: 0:00:02 149s LAMMPS (4 Feb 2025) 154s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 154s using 1 OpenMP thread(s) per MPI task 154s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 154s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 154s 1 by 1 by 1 MPI processor grid 154s Created 750 atoms 154s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 154s create_atoms CPU = 0.000 seconds 154s Created 750 atoms 154s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 154s create_atoms CPU = 0.000 seconds 154s Created 112 atoms 154s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 154s create_atoms CPU = 0.000 seconds 154s Created 112 atoms 154s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 154s create_atoms CPU = 0.000 seconds 154s 750 atoms in group lo 154s 862 atoms in group lo 154s 750 atoms in group hi 154s 862 atoms in group hi 154s 150 atoms in group lo-fixed 154s 150 atoms in group hi-fixed 154s 300 atoms in group boundary 154s 1424 atoms in group mobile 154s Setting atom values ... 154s 150 settings made for type 154s Setting atom values ... 154s 150 settings made for type 154s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:551) 154s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 154s Neighbor list info ... 154s update: every = 1 steps, delay = 5 steps, check = yes 154s max neighbors/atom: 2000, page size: 100000 154s master list distance cutoff = 2.8 154s ghost atom cutoff = 2.8 154s binsize = 1.4, bins = 41 31 1 154s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 154s (1) pair lj/cut, perpetual 154s attributes: half, newton on 154s pair build: half/bin/atomonly/newton 154s stencil: half/bin/2d 154s bin: standard 154s Setting up Verlet run ... 154s Unit style : lj 154s Current step : 0 154s Time step : 0.0025 154s Per MPI rank memory allocation (min/avg/max) = 3.059 | 3.059 | 3.059 Mbytes 154s Step Temp E_pair E_mol TotEng Press Volume 154s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 154s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 154s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 154s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 154s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 154s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 154s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 154s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431662 2444.9333 154s 8000 0.10658321 -3.036405 0 -2.9924178 -0.4572299 2444.9333 154s 9000 0.11648934 -3.0271687 0 -2.9790932 -0.45898613 2444.9333 154s 10000 0.10677611 -3.0303232 0 -2.9862564 -0.35269781 2444.9333 154s 11000 0.11746006 -3.0346344 0 -2.9861583 -0.46341365 2444.9333 154s 12000 0.112074 -3.036913 0 -2.9906597 -0.21768573 2444.9333 154s 13000 0.11249017 -3.0395382 0 -2.9931132 -0.44391864 2444.9333 154s 14000 0.11381248 -3.0362108 0 -2.9892401 -0.30885868 2444.9333 154s 15000 0.10964575 -3.0436265 0 -2.9983754 -0.26625672 2444.9333 154s 16000 0.10798733 -3.0460787 0 -3.001512 -0.27971711 2444.9333 154s 17000 0.11191725 -3.0455618 0 -2.9993732 -0.36993854 2444.9333 154s 18000 0.11418143 -3.0485595 0 -3.0014364 -0.24776847 2444.9333 154s 19000 0.11028213 -3.0473558 0 -3.001842 -0.30249398 2444.9333 154s 20000 0.11512925 -3.0504969 0 -3.0029827 -0.36022205 2444.9333 154s Loop time of 4.40223 on 1 procs for 20000 steps with 1724 atoms 154s 154s Performance: 981320.950 tau/day, 4543.153 timesteps/s, 7.832 Matom-step/s 154s 99.1% CPU use with 1 MPI tasks x 1 OpenMP threads 154s 154s MPI task timing breakdown: 154s Section | min time | avg time | max time |%varavg| %total 154s --------------------------------------------------------------- 154s Pair | 3.6543 | 3.6543 | 3.6543 | 0.0 | 83.01 154s Neigh | 0.29126 | 0.29126 | 0.29126 | 0.0 | 6.62 154s Comm | 0.021179 | 0.021179 | 0.021179 | 0.0 | 0.48 154s Output | 0.000798 | 0.000798 | 0.000798 | 0.0 | 0.02 154s Modify | 0.3551 | 0.3551 | 0.3551 | 0.0 | 8.07 154s Other | | 0.07958 | | | 1.81 154s 154s Nlocal: 1724 ave 1724 max 1724 min 154s Histogram: 1 0 0 0 0 0 0 0 0 0 154s Nghost: 145 ave 145 max 145 min 154s Histogram: 1 0 0 0 0 0 0 0 0 0 154s Neighs: 14397 ave 14397 max 14397 min 154s Histogram: 1 0 0 0 0 0 0 0 0 0 154s 154s Total # of neighbors = 14397 154s Ave neighs/atom = 8.3509281 154s Neighbor list builds = 723 154s Dangerous builds = 0 154s Total wall time: 0:00:04 154s run: OK 154s autopkgtest [18:58:50]: test friction: -----------------------] 155s friction PASS 155s autopkgtest [18:58:51]: test friction: - - - - - - - - - - results - - - - - - - - - - 155s autopkgtest [18:58:51]: test hugo: preparing testbed 155s Reading package lists... 155s Building dependency tree... 155s Reading state information... 155s Solving dependencies... 155s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 156s autopkgtest [18:58:52]: test hugo: [----------------------- 156s LAMMPS (4 Feb 2025) 156s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 156s using 1 OpenMP thread(s) per MPI task 156s Lattice spacing in x,y,z = 1.4142135 2 2 156s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 156s 1 by 1 by 2 MPI processor grid 156s Created 1000 atoms 156s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 156s create_atoms CPU = 0.000 seconds 156s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 156s Neighbor list info ... 156s update: every = 1 steps, delay = 0 steps, check = yes 156s max neighbors/atom: 2000, page size: 100000 156s master list distance cutoff = 1.8475372 156s ghost atom cutoff = 1.8475372 156s binsize = 0.92376862, bins = 8 11 11 156s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 156s (1) pair lj/cubic, perpetual 156s attributes: half, newton on 156s pair build: half/bin/atomonly/newton 156s stencil: half/bin/3d 156s bin: standard 156s Setting up cg style minimization ... 156s Unit style : lj 156s Current step : 0 156s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 156s (src/min.cpp:219) 156s Per MPI rank memory allocation (min/avg/max) = 4.237 | 4.237 | 4.237 Mbytes 156s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 156s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 156s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 156s 134 0 -6.3344253 -6.3344253 -4.2957391e-13 -4.6556764e-13 -4.6545223e-13 6.9780267 9.8684199 9.8684199 156s Loop time of 0.0357804 on 2 procs for 134 steps with 1000 atoms 156s 156s 99.7% CPU use with 2 MPI tasks x 1 OpenMP threads 156s 156s Minimization stats: 156s Stopping criterion = force tolerance 156s Energy initial, next-to-last, final = 156s -6.29375358358574 -6.33442531515467 -6.33442531515467 156s Force two-norm initial, final = 3395.2895 5.526433e-10 156s Force max component initial, final = 1960.2713 3.2059964e-10 156s Final line search alpha, max atom move = 1 3.2059964e-10 156s Iterations, force evaluations = 134 137 156s 156s MPI task timing breakdown: 156s Section | min time | avg time | max time |%varavg| %total 156s --------------------------------------------------------------- 156s Pair | 0.025002 | 0.027126 | 0.029251 | 1.3 | 75.81 156s Neigh | 0.00044247 | 0.00047345 | 0.00050442 | 0.0 | 1.32 156s Comm | 0.0014958 | 0.0036343 | 0.0057728 | 3.5 | 10.16 156s Output | 1.0036e-05 | 1.2829e-05 | 1.5623e-05 | 0.0 | 0.04 156s Modify | 0 | 0 | 0 | 0.0 | 0.00 156s Other | | 0.004533 | | | 12.67 156s 156s Nlocal: 500 ave 550 max 450 min 156s Histogram: 1 0 0 0 0 0 0 0 0 1 156s Nghost: 1214 ave 1264 max 1164 min 156s Histogram: 1 0 0 0 0 0 0 0 0 1 156s Neighs: 10500 ave 11550 max 9450 min 156s Histogram: 1 0 0 0 0 0 0 0 0 1 156s 156s Total # of neighbors = 21000 156s Ave neighs/atom = 21 156s Neighbor list builds = 1 156s Dangerous builds = 0 156s System init for write_restart ... 156s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 156s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 156s using 1 OpenMP thread(s) per MPI task 156s Reading restart file ... 156s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 156s restoring atom style atomic from restart 156s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 156s 1 by 1 by 2 MPI processor grid 156s restoring pair style lj/cubic from restart 156s 1000 atoms 156s read_restart CPU = 0.000 seconds 156s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 156s Neighbor list info ... 156s update: every = 1 steps, delay = 0 steps, check = yes 156s max neighbors/atom: 2000, page size: 100000 156s master list distance cutoff = 1.7475372 156s ghost atom cutoff = 1.7475372 156s binsize = 0.87376862, bins = 8 12 12 156s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 156s (1) pair lj/cubic, perpetual 156s attributes: half, newton on 156s pair build: half/bin/atomonly/newton 156s stencil: half/bin/3d 156s bin: standard 156s Setting up Verlet run ... 156s Unit style : lj 156s Current step : 0 156s Time step : 0.001 156s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 156s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 156s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 157s 1000 0.010266754 0.015384732 -2.1717334 -4183.9192 129.07798 58.489025 8.3141524 -4.1817628 0.9362044 23.511491 3.7372332 157s 2000 0.40259797 0.60329306 -5.627962 -1085.8312 12.843116 1.8560907 9.4470663 -1.0808065 -0.37219276 14.040385 0.6226867 157s 3000 0.47352764 0.70958118 -3.847268 -3270.82 65.659321 23.910002 8.6682025 -3.2676824 -0.14827512 19.052005 2.3460318 158s 4000 0.51027892 0.76465296 -4.3666607 -2668.4808 36.299422 5.4253511 8.7365217 -2.6648788 -0.43242827 14.580921 1.6947004 158s 5000 0.27107084 0.40619965 -4.8148544 -1808.6901 35.499158 7.8616668 8.7438741 -1.8042815 -0.17683868 14.465657 1.6705446 158s 6000 0.14589565 0.21862463 -4.1603429 -2363.5903 43.618418 5.9789884 8.3935297 -2.3596486 -0.050591412 14.026367 2.1169125 159s 7000 0.085822195 0.12860456 -4.2874019 -2281.4454 40.483746 3.874914 8.3489633 -2.2772866 -0.011160894 13.315551 2.0696635 159s 8000 0.039594243 0.059331974 -4.3555951 -2176.8532 39.840893 3.7201608 8.3381853 -2.1725569 0.028292259 13.163321 2.0603537 159s 9000 0.025376486 0.038026664 -4.2983996 -2330.0794 39.628092 2.631482 8.2935294 -2.3258191 0.032864503 12.942681 2.084285 160s 10000 0.020305022 0.030427075 -4.2090968 -1864.3718 42.005843 3.1326248 8.2404246 -1.8601931 0.074717463 13.108473 2.1814026 160s Loop time of 3.05605 on 2 procs for 10000 steps with 1000 atoms 160s 160s Performance: 282718.329 tau/day, 3272.203 timesteps/s, 3.272 Matom-step/s 160s 97.6% CPU use with 2 MPI tasks x 1 OpenMP threads 160s 160s MPI task timing breakdown: 160s Section | min time | avg time | max time |%varavg| %total 160s --------------------------------------------------------------- 160s Pair | 2.3325 | 2.3422 | 2.3518 | 0.6 | 76.64 160s Neigh | 0.089879 | 0.091286 | 0.092692 | 0.5 | 2.99 160s Comm | 0.29891 | 0.30908 | 0.31926 | 1.8 | 10.11 160s Output | 0.00044527 | 0.00099236 | 0.0015394 | 0.0 | 0.03 160s Modify | 0.28068 | 0.28142 | 0.28216 | 0.1 | 9.21 160s Other | | 0.03111 | | | 1.02 160s 160s Nlocal: 500 ave 509 max 491 min 160s Histogram: 1 0 0 0 0 0 0 0 0 1 160s Nghost: 1346.5 ave 1369 max 1324 min 160s Histogram: 1 0 0 0 0 0 0 0 0 1 160s Neighs: 10311.5 ave 10391 max 10232 min 160s Histogram: 1 0 0 0 0 0 0 0 0 1 160s 160s Total # of neighbors = 20623 160s Ave neighs/atom = 20.623 160s Neighbor list builds = 205 160s Dangerous builds = 0 160s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 160s using 1 OpenMP thread(s) per MPI task 160s Reading restart file ... 160s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 160s restoring atom style atomic from restart 160s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 160s 1 by 1 by 2 MPI processor grid 160s restoring pair style lj/cubic from restart 160s 1000 atoms 160s read_restart CPU = 0.000 seconds 160s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 160s Neighbor list info ... 160s update: every = 1 steps, delay = 0 steps, check = yes 160s max neighbors/atom: 2000, page size: 100000 160s master list distance cutoff = 1.7475372 160s ghost atom cutoff = 1.7475372 160s binsize = 0.87376862, bins = 8 12 12 160s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 160s (1) pair lj/cubic, perpetual 160s attributes: half, newton on 160s pair build: half/bin/atomonly/newton 160s stencil: half/bin/3d 160s bin: standard 160s Setting up Verlet run ... 160s Unit style : lj 160s Current step : 0 160s Time step : 0.001 160s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 160s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 160s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 160s 1000 0.0062790167 0.0094091065 -5.989181 -1670.9917 18.916499 7.5833446 9.2337867 -1.6650119 0.023434204 13.976079 0.92136905 160s 2000 0.0066373266 0.0099460339 -5.4562974 -2537.9609 37.066673 15.536927 8.9495838 -2.5325146 0.10236546 16.325445 1.5455989 160s 3000 0.006890427 0.010325305 -5.3657707 -2643.943 39.911802 16.807453 8.9154493 -2.6385876 0.11827588 16.639682 1.6328058 161s 4000 0.0073314031 0.010986107 -5.3630545 -2655.872 40.003435 16.849611 8.9144058 -2.6505199 0.11864983 16.649819 1.6355581 161s 5000 0.0075004567 0.011239434 -5.3630119 -2664.6029 39.9983 16.845885 8.9144863 -2.6592512 0.11845678 16.649441 1.6353853 161s 6000 0.0078159402 0.011712186 -5.3629866 -2673.5606 39.999501 16.84634 8.9144972 -2.6682093 0.11829898 16.649784 1.6354006 161s 7000 0.0078365866 0.011743125 -5.3625076 -2682.4138 40.001112 16.844623 8.9145083 -2.6770631 0.11814173 16.650214 1.6354243 162s 8000 0.0075482436 0.011311043 -5.3616205 -2690.9824 39.996485 16.835974 8.9145436 -2.6856321 0.11792207 16.649554 1.6352999 162s 9000 0.0083133885 0.012457613 -5.362258 -2700.1342 39.99904 16.841287 8.9145642 -2.6947844 0.11777124 16.650263 1.6353348 162s 10000 0.0086355586 0.012940385 -5.3622381 -2709.0315 39.997759 16.839976 8.9145913 -2.7036822 0.11757678 16.650228 1.6352858 162s Loop time of 2.57023 on 2 procs for 10000 steps with 1000 atoms 162s 162s Performance: 336156.819 tau/day, 3890.704 timesteps/s, 3.891 Matom-step/s 162s 98.1% CPU use with 2 MPI tasks x 1 OpenMP threads 162s 162s MPI task timing breakdown: 162s Section | min time | avg time | max time |%varavg| %total 162s --------------------------------------------------------------- 162s Pair | 2.0391 | 2.0441 | 2.049 | 0.3 | 79.53 162s Neigh | 0.0044637 | 0.0044969 | 0.0045302 | 0.0 | 0.17 162s Comm | 0.21931 | 0.22434 | 0.22937 | 1.1 | 8.73 162s Output | 0.00040709 | 0.0012692 | 0.0021313 | 2.4 | 0.05 162s Modify | 0.26875 | 0.26905 | 0.26935 | 0.1 | 10.47 162s Other | | 0.02702 | | | 1.05 162s 162s Nlocal: 500 ave 508 max 492 min 162s Histogram: 1 0 0 0 0 0 0 0 0 1 162s Nghost: 1214 ave 1222 max 1206 min 162s Histogram: 1 0 0 0 0 0 0 0 0 1 162s Neighs: 10500 ave 10668 max 10332 min 162s Histogram: 1 0 0 0 0 0 0 0 0 1 162s 162s Total # of neighbors = 21000 162s Ave neighs/atom = 21 162s Neighbor list builds = 10 162s Dangerous builds = 0 162s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 162s using 1 OpenMP thread(s) per MPI task 162s Reading restart file ... 162s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 162s restoring atom style atomic from restart 162s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 162s 1 by 1 by 2 MPI processor grid 162s restoring pair style lj/cubic from restart 162s 1000 atoms 162s read_restart CPU = 0.001 seconds 162s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 162s Neighbor list info ... 162s update: every = 1 steps, delay = 0 steps, check = yes 162s max neighbors/atom: 2000, page size: 100000 162s master list distance cutoff = 1.7475372 162s ghost atom cutoff = 1.7475372 162s binsize = 0.87376862, bins = 8 12 12 162s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 162s (1) pair lj/cubic, perpetual 162s attributes: half, newton on 162s pair build: half/bin/atomonly/newton 162s stencil: half/bin/3d 162s bin: standard 162s Setting up Verlet run ... 162s Unit style : lj 162s Current step : 0 162s Time step : 0.001 162s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 162s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 162s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 162s 1000 0.0079519127 0.011915941 -5.50188 -838.80672 35.61641 14.888864 8.9677618 -0.83331675 0.093886135 16.160598 1.5002751 163s 2000 0.019411054 0.029087464 -5.2936665 -1019.5497 41.77353 17.564044 8.8958463 -1.0142851 0.11811209 16.853902 1.687248 163s 3000 0.047492482 0.071167484 -5.3441861 -971.66654 39.02349 16.097707 8.9321705 -0.96639352 0.073376741 16.597136 1.600557 163s 4000 0.12096417 0.18126481 -5.2102393 -1315.5664 40.846153 16.436163 8.9200987 -1.3105374 0.017574117 16.873813 1.6478442 163s 5000 0.1272463 0.19067858 -5.2517864 -1192.2753 39.105833 15.560562 8.9406854 -1.1872142 -0.00025457398 16.689339 1.5950732 164s 6000 0.14515651 0.21751704 -5.1820215 -1372.0064 40.682715 16.119979 8.9220924 -1.3670419 -0.0066818447 16.857436 1.6428451 164s 7000 0.12286771 0.18411727 -5.2596973 -1200.0518 39.255412 15.703071 8.938111 -1.1949762 0.0073588891 16.698492 1.6002966 164s 8000 0.1428801 0.21410583 -5.1748689 -1340.8702 40.704199 16.116121 8.9238602 -1.3359094 -0.0085191302 16.877378 1.6417704 164s 9000 0.12012635 0.18000933 -5.2541332 -1187.2981 39.322347 15.708304 8.9368444 -1.182224 0.0081737382 16.701561 1.6027307 165s 10000 0.1485814 0.22264922 -5.184468 -1359.9408 40.542555 16.055637 8.9246711 -1.3549789 -0.010330357 16.85094 1.6378163 165s Loop time of 2.6274 on 2 procs for 10000 steps with 1000 atoms 165s 165s Performance: 328842.197 tau/day, 3806.044 timesteps/s, 3.806 Matom-step/s 165s 96.9% CPU use with 2 MPI tasks x 1 OpenMP threads 165s 165s MPI task timing breakdown: 165s Section | min time | avg time | max time |%varavg| %total 165s --------------------------------------------------------------- 165s Pair | 2.0614 | 2.0632 | 2.0649 | 0.1 | 78.52 165s Neigh | 0.043207 | 0.04393 | 0.044654 | 0.3 | 1.67 165s Comm | 0.22096 | 0.22201 | 0.22306 | 0.2 | 8.45 165s Output | 0.00043311 | 0.0016071 | 0.0027811 | 2.9 | 0.06 165s Modify | 0.2665 | 0.26797 | 0.26944 | 0.3 | 10.20 165s Other | | 0.02873 | | | 1.09 165s 165s Nlocal: 500 ave 510 max 490 min 165s Histogram: 1 0 0 0 0 0 0 0 0 1 165s Nghost: 1216.5 ave 1227 max 1206 min 165s Histogram: 1 0 0 0 0 0 0 0 0 1 165s Neighs: 10311 ave 10520 max 10102 min 165s Histogram: 1 0 0 0 0 0 0 0 0 1 165s 165s Total # of neighbors = 20622 165s Ave neighs/atom = 20.622 165s Neighbor list builds = 95 165s Dangerous builds = 0 165s Total wall time: 0:00:08 165s LAMMPS (4 Feb 2025) 165s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 165s using 1 OpenMP thread(s) per MPI task 165s Lattice spacing in x,y,z = 1.4142135 2 2 165s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 165s 1 by 1 by 1 MPI processor grid 165s Created 1000 atoms 165s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 165s create_atoms CPU = 0.001 seconds 165s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 165s Neighbor list info ... 165s update: every = 1 steps, delay = 0 steps, check = yes 165s max neighbors/atom: 2000, page size: 100000 165s master list distance cutoff = 1.8475372 165s ghost atom cutoff = 1.8475372 165s binsize = 0.92376862, bins = 8 11 11 165s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 165s (1) pair lj/cubic, perpetual 165s attributes: half, newton on 165s pair build: half/bin/atomonly/newton 165s stencil: half/bin/3d 165s bin: standard 165s Setting up cg style minimization ... 165s Unit style : lj 165s Current step : 0 165s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 165s (src/min.cpp:219) 165s Per MPI rank memory allocation (min/avg/max) = 4.247 | 4.247 | 4.247 Mbytes 165s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 165s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 165s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 165s 134 0 -6.3344253 -6.3344253 -4.3566216e-13 -4.7438184e-13 -4.6860149e-13 6.9780267 9.8684199 9.8684199 165s Loop time of 0.0814416 on 1 procs for 134 steps with 1000 atoms 165s 165s 80.5% CPU use with 1 MPI tasks x 1 OpenMP threads 165s 165s Minimization stats: 165s Stopping criterion = force tolerance 165s Energy initial, next-to-last, final = 165s -6.29375358358556 -6.33442531515503 -6.33442531515503 165s Force two-norm initial, final = 3395.2895 5.6047601e-10 165s Force max component initial, final = 1960.2713 3.2666928e-10 165s Final line search alpha, max atom move = 1 3.2666928e-10 165s Iterations, force evaluations = 134 137 165s 165s MPI task timing breakdown: 165s Section | min time | avg time | max time |%varavg| %total 165s --------------------------------------------------------------- 165s Pair | 0.069706 | 0.069706 | 0.069706 | 0.0 | 85.59 165s Neigh | 0.00096226 | 0.00096226 | 0.00096226 | 0.0 | 1.18 165s Comm | 0.00090606 | 0.00090606 | 0.00090606 | 0.0 | 1.11 165s Output | 2.2511e-05 | 2.2511e-05 | 2.2511e-05 | 0.0 | 0.03 165s Modify | 0 | 0 | 0 | 0.0 | 0.00 165s Other | | 0.009845 | | | 12.09 165s 165s Nlocal: 1000 ave 1000 max 1000 min 165s Histogram: 1 0 0 0 0 0 0 0 0 0 165s Nghost: 1724 ave 1724 max 1724 min 165s Histogram: 1 0 0 0 0 0 0 0 0 0 165s Neighs: 21000 ave 21000 max 21000 min 165s Histogram: 1 0 0 0 0 0 0 0 0 0 165s 165s Total # of neighbors = 21000 165s Ave neighs/atom = 21 165s Neighbor list builds = 1 165s Dangerous builds = 0 165s System init for write_restart ... 165s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 165s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 165s using 1 OpenMP thread(s) per MPI task 165s Reading restart file ... 165s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 165s restoring atom style atomic from restart 165s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 165s 1 by 1 by 1 MPI processor grid 165s restoring pair style lj/cubic from restart 165s 1000 atoms 165s read_restart CPU = 0.000 seconds 165s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 165s Neighbor list info ... 165s update: every = 1 steps, delay = 0 steps, check = yes 165s max neighbors/atom: 2000, page size: 100000 165s master list distance cutoff = 1.7475372 165s ghost atom cutoff = 1.7475372 165s binsize = 0.87376862, bins = 8 12 12 165s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 170s (1) pair lj/cubic, perpetual 170s attributes: half, newton on 170s pair build: half/bin/atomonly/newton 170s stencil: half/bin/3d 170s bin: standard 170s Setting up Verlet run ... 170s Unit style : lj 170s Current step : 0 170s Time step : 0.001 170s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 170s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 170s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 170s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 170s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 170s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 170s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 170s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 170s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 170s 7000 0.094832865 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659777 12.95347 1.8841809 170s 8000 0.043338745 0.06494311 -4.6249402 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 170s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 170s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 170s Loop time of 5.3501 on 1 procs for 10000 steps with 1000 atoms 170s 170s Performance: 161492.387 tau/day, 1869.125 timesteps/s, 1.869 Matom-step/s 170s 97.0% CPU use with 1 MPI tasks x 1 OpenMP threads 170s 170s MPI task timing breakdown: 170s Section | min time | avg time | max time |%varavg| %total 170s --------------------------------------------------------------- 170s Pair | 4.6498 | 4.6498 | 4.6498 | 0.0 | 86.91 170s Neigh | 0.16781 | 0.16781 | 0.16781 | 0.0 | 3.14 170s Comm | 0.068301 | 0.068301 | 0.068301 | 0.0 | 1.28 170s Output | 0.00052181 | 0.00052181 | 0.00052181 | 0.0 | 0.01 170s Modify | 0.42845 | 0.42845 | 0.42845 | 0.0 | 8.01 170s Other | | 0.03523 | | | 0.66 170s 170s Nlocal: 1000 ave 1000 max 1000 min 170s Histogram: 1 0 0 0 0 0 0 0 0 0 170s Nghost: 1886 ave 1886 max 1886 min 170s Histogram: 1 0 0 0 0 0 0 0 0 0 170s Neighs: 20874 ave 20874 max 20874 min 170s Histogram: 1 0 0 0 0 0 0 0 0 0 170s 170s Total # of neighbors = 20874 170s Ave neighs/atom = 20.874 170s Neighbor list builds = 188 170s Dangerous builds = 0 170s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 170s using 1 OpenMP thread(s) per MPI task 170s Reading restart file ... 170s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 170s restoring atom style atomic from restart 170s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 170s 1 by 1 by 1 MPI processor grid 170s restoring pair style lj/cubic from restart 170s 1000 atoms 170s read_restart CPU = 0.000 seconds 170s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 170s Neighbor list info ... 175s update: every = 1 steps, delay = 0 steps, check = yes 175s max neighbors/atom: 2000, page size: 100000 175s master list distance cutoff = 1.7475372 175s ghost atom cutoff = 1.7475372 175s binsize = 0.87376862, bins = 8 12 12 175s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 175s (1) pair lj/cubic, perpetual 175s attributes: half, newton on 175s pair build: half/bin/atomonly/newton 175s stencil: half/bin/3d 175s bin: standard 175s Setting up Verlet run ... 175s Unit style : lj 175s Current step : 0 175s Time step : 0.001 175s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 175s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 175s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 175s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 175s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 175s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 175s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 175s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 175s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 175s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 175s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 175s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 175s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 175s Loop time of 4.57235 on 1 procs for 10000 steps with 1000 atoms 175s 175s Performance: 188962.049 tau/day, 2187.061 timesteps/s, 2.187 Matom-step/s 175s 98.1% CPU use with 1 MPI tasks x 1 OpenMP threads 175s 175s MPI task timing breakdown: 175s Section | min time | avg time | max time |%varavg| %total 175s --------------------------------------------------------------- 175s Pair | 4.0623 | 4.0623 | 4.0623 | 0.0 | 88.85 175s Neigh | 0.0095987 | 0.0095987 | 0.0095987 | 0.0 | 0.21 175s Comm | 0.054407 | 0.054407 | 0.054407 | 0.0 | 1.19 175s Output | 0.00052642 | 0.00052642 | 0.00052642 | 0.0 | 0.01 175s Modify | 0.41514 | 0.41514 | 0.41514 | 0.0 | 9.08 175s Other | | 0.03037 | | | 0.66 175s 175s Nlocal: 1000 ave 1000 max 1000 min 175s Histogram: 1 0 0 0 0 0 0 0 0 0 175s Nghost: 1724 ave 1724 max 1724 min 175s Histogram: 1 0 0 0 0 0 0 0 0 0 175s Neighs: 21000 ave 21000 max 21000 min 175s Histogram: 1 0 0 0 0 0 0 0 0 0 175s 175s Total # of neighbors = 21000 175s Ave neighs/atom = 21 175s Neighbor list builds = 11 175s Dangerous builds = 0 175s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 175s using 1 OpenMP thread(s) per MPI task 175s Reading restart file ... 175s restart file = 4 Feb 2025, LAMMPS = 4 Feb 2025 175s restoring atom style atomic from restart 180s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 180s 1 by 1 by 1 MPI processor grid 180s restoring pair style lj/cubic from restart 180s 1000 atoms 180s read_restart CPU = 0.001 seconds 180s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 180s Neighbor list info ... 180s update: every = 1 steps, delay = 0 steps, check = yes 180s max neighbors/atom: 2000, page size: 100000 180s master list distance cutoff = 1.7475372 180s ghost atom cutoff = 1.7475372 180s binsize = 0.87376862, bins = 8 12 12 180s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 180s (1) pair lj/cubic, perpetual 180s attributes: half, newton on 180s pair build: half/bin/atomonly/newton 180s stencil: half/bin/3d 180s bin: standard 180s Setting up Verlet run ... 180s Unit style : lj 180s Current step : 0 180s Time step : 0.001 180s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 180s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 180s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 180s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 180s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 180s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 180s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 180s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 180s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 180s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 180s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 180s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 180s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 180s Loop time of 4.72161 on 1 procs for 10000 steps with 1000 atoms 180s 180s Performance: 182988.484 tau/day, 2117.922 timesteps/s, 2.118 Matom-step/s 180s 97.5% CPU use with 1 MPI tasks x 1 OpenMP threads 180s 180s MPI task timing breakdown: 180s Section | min time | avg time | max time |%varavg| %total 180s --------------------------------------------------------------- 180s Pair | 4.1224 | 4.1224 | 4.1224 | 0.0 | 87.31 180s Neigh | 0.084383 | 0.084383 | 0.084383 | 0.0 | 1.79 180s Comm | 0.058766 | 0.058766 | 0.058766 | 0.0 | 1.24 180s Output | 0.00057017 | 0.00057017 | 0.00057017 | 0.0 | 0.01 180s Modify | 0.42304 | 0.42304 | 0.42304 | 0.0 | 8.96 180s Other | | 0.03243 | | | 0.69 180s 180s Nlocal: 1000 ave 1000 max 1000 min 180s Histogram: 1 0 0 0 0 0 0 0 0 0 180s Nghost: 1724 ave 1724 max 1724 min 180s Histogram: 1 0 0 0 0 0 0 0 0 0 180s Neighs: 20654 ave 20654 max 20654 min 180s Histogram: 1 0 0 0 0 0 0 0 0 0 180s 180s Total # of neighbors = 20654 180s Ave neighs/atom = 20.654 180s Neighbor list builds = 94 180s Dangerous builds = 0 180s Total wall time: 0:00:14 180s run: OK 180s autopkgtest [18:59:16]: test hugo: -----------------------] 180s autopkgtest [18:59:16]: test hugo: - - - - - - - - - - results - - - - - - - - - - 180s hugo PASS 181s autopkgtest [18:59:17]: test command1: preparing testbed 200s Creating nova instance adt-resolute-s390x-lammps-20251018-185616-juju-7f2275-prod-proposed-migration-environment-20-596993f6-7173-464d-94da-bf75e3142e4e from image adt/ubuntu-resolute-s390x-server-20251018.img (UUID c47ab411-f9be-46ce-b861-20d934d06dba)... 244s autopkgtest [19:00:20]: testbed dpkg architecture: s390x 244s autopkgtest [19:00:20]: testbed apt version: 3.1.6ubuntu2 245s autopkgtest [19:00:21]: @@@@@@@@@@@@@@@@@@@@ test bed setup 245s autopkgtest [19:00:21]: testbed release detected to be: resolute 245s autopkgtest [19:00:21]: updating testbed package index (apt update) 246s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 246s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 246s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 246s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 246s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [50.7 kB] 246s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 246s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [456 kB] 247s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [16.7 kB] 247s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x Packages [92.8 kB] 247s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted s390x Packages [940 B] 247s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe s390x Packages [314 kB] 247s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse s390x Packages [4660 B] 247s Fetched 1023 kB in 2s (584 kB/s) 248s Reading package lists... 249s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 249s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 249s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 249s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 249s Reading package lists... 250s Reading package lists... 250s Building dependency tree... 250s Reading state information... 250s Calculating upgrade... 250s The following packages will be upgraded: 250s apt gir1.2-girepository-2.0 libapt-pkg7.0 libgirepository-1.0-1 250s libpython3-stdlib lto-disabled-list python3 python3-minimal 250s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 250s Need to get 2763 kB of archives. 250s After this operation, 14.3 kB of additional disk space will be used. 250s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x python3-minimal s390x 3.13.7-2 [27.8 kB] 250s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x python3 s390x 3.13.7-2 [23.9 kB] 250s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x libpython3-stdlib s390x 3.13.7-2 [10.6 kB] 250s Get:4 http://ftpmaster.internal/ubuntu resolute/main s390x libapt-pkg7.0 s390x 3.1.8ubuntu1 [1144 kB] 251s Get:5 http://ftpmaster.internal/ubuntu resolute/main s390x apt s390x 3.1.8ubuntu1 [1432 kB] 252s Get:6 http://ftpmaster.internal/ubuntu resolute/main s390x libgirepository-1.0-1 s390x 1.86.0-6 [86.9 kB] 252s Get:7 http://ftpmaster.internal/ubuntu resolute/main s390x gir1.2-girepository-2.0 s390x 1.86.0-6 [25.1 kB] 252s Get:8 http://ftpmaster.internal/ubuntu resolute/main s390x lto-disabled-list all 71 [12.5 kB] 252s dpkg-preconfigure: unable to re-open stdin: No such file or directory 252s Fetched 2763 kB in 2s (1558 kB/s) 252s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56852 files and directories currently installed.) 252s Preparing to unpack .../python3-minimal_3.13.7-2_s390x.deb ... 252s Unpacking python3-minimal (3.13.7-2) over (3.13.7-1) ... 252s Setting up python3-minimal (3.13.7-2) ... 252s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56852 files and directories currently installed.) 252s Preparing to unpack .../0-python3_3.13.7-2_s390x.deb ... 252s running python pre-rtupdate hooks for python3.13... 252s Unpacking python3 (3.13.7-2) over (3.13.7-1) ... 252s Preparing to unpack .../1-libpython3-stdlib_3.13.7-2_s390x.deb ... 252s Unpacking libpython3-stdlib:s390x (3.13.7-2) over (3.13.7-1) ... 252s Preparing to unpack .../2-libapt-pkg7.0_3.1.8ubuntu1_s390x.deb ... 252s Unpacking libapt-pkg7.0:s390x (3.1.8ubuntu1) over (3.1.6ubuntu2) ... 252s Preparing to unpack .../3-apt_3.1.8ubuntu1_s390x.deb ... 252s Unpacking apt (3.1.8ubuntu1) over (3.1.6ubuntu2) ... 252s Preparing to unpack .../4-libgirepository-1.0-1_1.86.0-6_s390x.deb ... 252s Unpacking libgirepository-1.0-1:s390x (1.86.0-6) over (1.84.0-1) ... 252s Preparing to unpack .../5-gir1.2-girepository-2.0_1.86.0-6_s390x.deb ... 252s Unpacking gir1.2-girepository-2.0:s390x (1.86.0-6) over (1.84.0-1) ... 252s Preparing to unpack .../6-lto-disabled-list_71_all.deb ... 252s Unpacking lto-disabled-list (71) over (69) ... 252s Setting up lto-disabled-list (71) ... 252s Setting up libgirepository-1.0-1:s390x (1.86.0-6) ... 252s Setting up libapt-pkg7.0:s390x (3.1.8ubuntu1) ... 252s Setting up libpython3-stdlib:s390x (3.13.7-2) ... 252s Setting up apt (3.1.8ubuntu1) ... 253s Setting up python3 (3.13.7-2) ... 253s running python rtupdate hooks for python3.13... 253s running python post-rtupdate hooks for python3.13... 253s Setting up gir1.2-girepository-2.0:s390x (1.86.0-6) ... 253s Processing triggers for man-db (2.13.1-1) ... 254s Processing triggers for libc-bin (2.42-0ubuntu3) ... 254s autopkgtest [19:00:30]: upgrading testbed (apt dist-upgrade and autopurge) 255s Reading package lists... 255s Building dependency tree... 255s Reading state information... 255s Calculating upgrade... 255s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 256s Reading package lists... 256s Building dependency tree... 256s Reading state information... 256s Solving dependencies... 256s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 256s autopkgtest [19:00:32]: rebooting testbed after setup commands that affected boot 271s Reading package lists... 272s Building dependency tree... 272s Reading state information... 272s Solving dependencies... 272s The following NEW packages will be installed: 272s autoconf automake autotools-dev cpp-15 cpp-15-s390x-linux-gnu 272s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-15 272s gcc-15-s390x-linux-gnu gfortran-15 gfortran-15-s390x-linux-gnu libaec0 272s libasan8 libblas3 libcairo2 libcc1-0 libdeflate0 libdouble-conversion3 272s libdrm-amdgpu1 libevent-2.1-7t64 libevent-core-2.1-7t64 libevent-dev 272s libevent-extra-2.1-7t64 libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 272s libfabric1 libfftw3-double3 libfontconfig1 libfreetype6 libgbm1 272s libgcc-15-dev libgfortran-15-dev libgfortran5 libgl1 libgl1-mesa-dri 272s libgl2ps1.4 libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 libhdf5-310 272s libhdf5-hl-310 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev 272s libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery 272s libjs-jquery-ui libjsoncpp26 libkim-api2 liblammps-dev liblammps0t64 272s liblapack3 libltdl-dev libltdl7 libmpc3 libnetcdf22 libnl-3-dev 272s libnl-route-3-dev libnuma-dev libogg0 libopengl0 libopenmpi-dev libopenmpi40 272s libpciaccess0 libpixman-1-0 libpnetcdf6 libproj25 librdmacm1t64 libsharpyuv0 272s libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheoradec1 272s libtheoraenc1 libtiff6 libtk8.6 libubsan1 libvoro++1 libvtk9.3 libvulkan1 272s libwebp7 libx11-xcb1 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 272s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxft2 libxnvctrl0 272s libxrender1 libxshmfence1 libxss1 libxxf86vm1 m4 mesa-libgallium 272s mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin 272s openmpi-common proj-data python3-lammps x11-common zlib1g-dev 272s 0 upgraded, 117 newly installed, 0 to remove and 0 not upgraded. 272s Need to get 127 MB of archives. 272s After this operation, 483 MB of additional disk space will be used. 272s Get:1 http://ftpmaster.internal/ubuntu resolute/main s390x m4 s390x 1.4.19-8 [259 kB] 272s Get:2 http://ftpmaster.internal/ubuntu resolute/main s390x autoconf all 2.72-3.1ubuntu1 [384 kB] 272s Get:3 http://ftpmaster.internal/ubuntu resolute/main s390x autotools-dev all 20240727.1 [43.4 kB] 272s Get:4 http://ftpmaster.internal/ubuntu resolute/main s390x automake all 1:1.17-4ubuntu1 [572 kB] 273s Get:5 http://ftpmaster.internal/ubuntu resolute/main s390x libisl23 s390x 0.27-1 [704 kB] 273s Get:6 http://ftpmaster.internal/ubuntu resolute/main s390x libmpc3 s390x 1.3.1-1build3 [57.6 kB] 273s Get:7 http://ftpmaster.internal/ubuntu resolute/main s390x cpp-15-s390x-linux-gnu s390x 15.2.0-5ubuntu1 [10.2 MB] 275s Get:8 http://ftpmaster.internal/ubuntu resolute/main s390x cpp-15 s390x 15.2.0-5ubuntu1 [1024 B] 275s Get:9 http://ftpmaster.internal/ubuntu resolute/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 275s Get:10 http://ftpmaster.internal/ubuntu resolute/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 275s Get:11 http://ftpmaster.internal/ubuntu resolute/main s390x fontconfig-config s390x 2.15.0-2.3ubuntu1 [38.1 kB] 275s Get:12 http://ftpmaster.internal/ubuntu resolute/main s390x libcc1-0 s390x 15.2.0-5ubuntu1 [50.0 kB] 275s Get:13 http://ftpmaster.internal/ubuntu resolute/main s390x libgomp1 s390x 15.2.0-5ubuntu1 [154 kB] 275s Get:14 http://ftpmaster.internal/ubuntu resolute/main s390x libitm1 s390x 15.2.0-5ubuntu1 [30.9 kB] 275s Get:15 http://ftpmaster.internal/ubuntu resolute/main s390x libasan8 s390x 15.2.0-5ubuntu1 [2969 kB] 275s Get:16 http://ftpmaster.internal/ubuntu resolute/main s390x libubsan1 s390x 15.2.0-5ubuntu1 [1211 kB] 275s Get:17 http://ftpmaster.internal/ubuntu resolute/main s390x libgcc-15-dev s390x 15.2.0-5ubuntu1 [1045 kB] 275s Get:18 http://ftpmaster.internal/ubuntu resolute/main s390x gcc-15-s390x-linux-gnu s390x 15.2.0-5ubuntu1 [19.9 MB] 276s Get:19 http://ftpmaster.internal/ubuntu resolute/main s390x gcc-15 s390x 15.2.0-5ubuntu1 [512 kB] 276s Get:20 http://ftpmaster.internal/ubuntu resolute/main s390x libgfortran5 s390x 15.2.0-5ubuntu1 [629 kB] 276s Get:21 http://ftpmaster.internal/ubuntu resolute/main s390x libgfortran-15-dev s390x 15.2.0-5ubuntu1 [673 kB] 276s Get:22 http://ftpmaster.internal/ubuntu resolute/main s390x gfortran-15-s390x-linux-gnu s390x 15.2.0-5ubuntu1 [10.9 MB] 277s Get:23 http://ftpmaster.internal/ubuntu resolute/main s390x gfortran-15 s390x 15.2.0-5ubuntu1 [17.7 kB] 277s Get:24 http://ftpmaster.internal/ubuntu resolute/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 277s Get:25 http://ftpmaster.internal/ubuntu resolute/main s390x libblas3 s390x 3.12.1-6build1 [245 kB] 277s Get:26 http://ftpmaster.internal/ubuntu resolute/main s390x libfreetype6 s390x 2.13.3+dfsg-1build1 [430 kB] 277s Get:27 http://ftpmaster.internal/ubuntu resolute/main s390x libfontconfig1 s390x 2.15.0-2.3ubuntu1 [149 kB] 277s Get:28 http://ftpmaster.internal/ubuntu resolute/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 277s Get:29 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-render0 s390x 1.17.0-2build1 [16.9 kB] 277s Get:30 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-shm0 s390x 1.17.0-2build1 [5916 B] 277s Get:31 http://ftpmaster.internal/ubuntu resolute/main s390x libxrender1 s390x 1:0.9.12-1 [20.9 kB] 277s Get:32 http://ftpmaster.internal/ubuntu resolute/main s390x libcairo2 s390x 1.18.4-1build1 [580 kB] 277s Get:33 http://ftpmaster.internal/ubuntu resolute/main s390x libdeflate0 s390x 1.23-2 [46.0 kB] 277s Get:34 http://ftpmaster.internal/ubuntu resolute/universe s390x libdouble-conversion3 s390x 3.3.1-1build1 [43.5 kB] 277s Get:35 http://ftpmaster.internal/ubuntu resolute/main s390x libdrm-amdgpu1 s390x 2.4.125-1 [21.8 kB] 277s Get:36 http://ftpmaster.internal/ubuntu resolute/main s390x libevent-2.1-7t64 s390x 2.1.12-stable-10build1 [144 kB] 277s Get:37 http://ftpmaster.internal/ubuntu resolute/main s390x libevent-core-2.1-7t64 s390x 2.1.12-stable-10build1 [93.1 kB] 277s Get:38 http://ftpmaster.internal/ubuntu resolute/main s390x libevent-extra-2.1-7t64 s390x 2.1.12-stable-10build1 [63.2 kB] 277s Get:39 http://ftpmaster.internal/ubuntu resolute/main s390x libevent-pthreads-2.1-7t64 s390x 2.1.12-stable-10build1 [8060 B] 277s Get:40 http://ftpmaster.internal/ubuntu resolute/main s390x libevent-openssl-2.1-7t64 s390x 2.1.12-stable-10build1 [15.1 kB] 277s Get:41 http://ftpmaster.internal/ubuntu resolute/main s390x libevent-dev s390x 2.1.12-stable-10build1 [274 kB] 277s Get:42 http://ftpmaster.internal/ubuntu resolute/main s390x librdmacm1t64 s390x 56.1-1ubuntu1 [73.6 kB] 277s Get:43 http://ftpmaster.internal/ubuntu resolute/universe s390x libfabric1 s390x 2.1.0-1.1 [640 kB] 277s Get:44 http://ftpmaster.internal/ubuntu resolute/main s390x libfftw3-double3 s390x 3.3.10-2fakesync1build2 [512 kB] 277s Get:45 http://ftpmaster.internal/ubuntu resolute/main s390x libx11-xcb1 s390x 2:1.8.12-1build1 [7972 B] 277s Get:46 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-dri3-0 s390x 1.17.0-2build1 [7688 B] 277s Get:47 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-present0 s390x 1.17.0-2build1 [6346 B] 277s Get:48 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-randr0 s390x 1.17.0-2build1 [19.0 kB] 277s Get:49 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-sync1 s390x 1.17.0-2build1 [9530 B] 277s Get:50 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-xfixes0 s390x 1.17.0-2build1 [10.6 kB] 277s Get:51 http://ftpmaster.internal/ubuntu resolute/main s390x libxshmfence1 s390x 1.3.3-1 [5202 B] 277s Get:52 http://ftpmaster.internal/ubuntu resolute/main s390x mesa-libgallium s390x 25.2.3-1ubuntu1 [8319 kB] 277s Get:53 http://ftpmaster.internal/ubuntu resolute/main s390x libgbm1 s390x 25.2.3-1ubuntu1 [34.7 kB] 277s Get:54 http://ftpmaster.internal/ubuntu resolute/main s390x libvulkan1 s390x 1.4.321.0-1 [147 kB] 277s Get:55 http://ftpmaster.internal/ubuntu resolute/main s390x libgl1-mesa-dri s390x 25.2.3-1ubuntu1 [36.0 kB] 277s Get:56 http://ftpmaster.internal/ubuntu resolute/main s390x libglvnd0 s390x 1.7.0-1build2 [107 kB] 277s Get:57 http://ftpmaster.internal/ubuntu resolute/main s390x libxcb-glx0 s390x 1.17.0-2build1 [25.6 kB] 277s Get:58 http://ftpmaster.internal/ubuntu resolute/main s390x libxxf86vm1 s390x 1:1.1.4-1build4 [9630 B] 277s Get:59 http://ftpmaster.internal/ubuntu resolute/main s390x libglx-mesa0 s390x 25.2.3-1ubuntu1 [114 kB] 277s Get:60 http://ftpmaster.internal/ubuntu resolute/main s390x libglx0 s390x 1.7.0-1build2 [30.9 kB] 277s Get:61 http://ftpmaster.internal/ubuntu resolute/main s390x libgl1 s390x 1.7.0-1build2 [135 kB] 277s Get:62 http://ftpmaster.internal/ubuntu resolute/universe s390x libgl2ps1.4 s390x 1.4.2+dfsg1-2build1 [44.1 kB] 277s Get:63 http://ftpmaster.internal/ubuntu resolute/universe s390x libglew2.2 s390x 2.2.0-4build1 [195 kB] 277s Get:64 http://ftpmaster.internal/ubuntu resolute/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 277s Get:65 http://ftpmaster.internal/ubuntu resolute/universe s390x libhdf5-310 s390x 1.14.5+repack-3build1 [1477 kB] 277s Get:66 http://ftpmaster.internal/ubuntu resolute/universe s390x libhdf5-hl-310 s390x 1.14.5+repack-3build1 [61.1 kB] 277s Get:67 http://ftpmaster.internal/ubuntu resolute/universe s390x libhwloc15 s390x 2.12.2-1 [175 kB] 277s Get:68 http://ftpmaster.internal/ubuntu resolute/main s390x libjpeg-turbo8 s390x 2.1.5-4ubuntu2 [147 kB] 277s Get:69 http://ftpmaster.internal/ubuntu resolute/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 277s Get:70 http://ftpmaster.internal/ubuntu resolute/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 277s Get:71 http://ftpmaster.internal/ubuntu resolute/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 277s Get:72 http://ftpmaster.internal/ubuntu resolute/main s390x libjsoncpp26 s390x 1.9.6-3 [80.8 kB] 277s Get:73 http://ftpmaster.internal/ubuntu resolute/universe s390x libkim-api2 s390x 2.3.0-1ubuntu1 [602 kB] 277s Get:74 http://ftpmaster.internal/ubuntu resolute/main s390x liblapack3 s390x 3.12.1-6build1 [2910 kB] 277s Get:75 http://ftpmaster.internal/ubuntu resolute/universe s390x libnetcdf22 s390x 1:4.9.3-1build1 [583 kB] 277s Get:76 http://ftpmaster.internal/ubuntu resolute/main s390x libpciaccess0 s390x 0.18.1-1ubuntu2 [19.1 kB] 277s Get:77 http://ftpmaster.internal/ubuntu resolute/main s390x libxnvctrl0 s390x 510.47.03-0ubuntu4 [12.7 kB] 277s Get:78 http://ftpmaster.internal/ubuntu resolute/main s390x ocl-icd-libopencl1 s390x 2.3.3-1 [44.9 kB] 277s Get:79 http://ftpmaster.internal/ubuntu resolute/universe s390x libhwloc-plugins s390x 2.12.2-1 [15.9 kB] 277s Get:80 http://ftpmaster.internal/ubuntu resolute/universe s390x libopenmpi40 s390x 5.0.8-8ubuntu1 [2907 kB] 277s Get:81 http://ftpmaster.internal/ubuntu resolute/universe s390x libpnetcdf6 s390x 1.14.0-2 [1172 kB] 277s Get:82 http://ftpmaster.internal/ubuntu resolute/universe s390x libvoro++1 s390x 0.5+revert-to-0.4.6+dfsg1-1 [110 kB] 277s Get:83 http://ftpmaster.internal/ubuntu resolute/main s390x libogg0 s390x 1.3.5-3build1 [24.4 kB] 277s Get:84 http://ftpmaster.internal/ubuntu resolute/main s390x libopengl0 s390x 1.7.0-1build2 [44.9 kB] 277s Get:85 http://ftpmaster.internal/ubuntu resolute/universe s390x proj-data all 9.6.0-1 [7955 kB] 278s Get:86 http://ftpmaster.internal/ubuntu resolute/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 278s Get:87 http://ftpmaster.internal/ubuntu resolute/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 278s Get:88 http://ftpmaster.internal/ubuntu resolute/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 278s Get:89 http://ftpmaster.internal/ubuntu resolute/main s390x libtiff6 s390x 4.7.0-3ubuntu3 [222 kB] 278s Get:90 http://ftpmaster.internal/ubuntu resolute/universe s390x libproj25 s390x 9.6.0-1 [1467 kB] 278s Get:91 http://ftpmaster.internal/ubuntu resolute/universe s390x libtbbbind-2-5 s390x 2022.1.0-1 [14.7 kB] 278s Get:92 http://ftpmaster.internal/ubuntu resolute/universe s390x libtbbmalloc2 s390x 2022.1.0-1 [58.4 kB] 278s Get:93 http://ftpmaster.internal/ubuntu resolute/universe s390x libtbb12 s390x 2022.1.0-1 [100 kB] 278s Get:94 http://ftpmaster.internal/ubuntu resolute/main s390x libtcl8.6 s390x 8.6.17+dfsg-1 [1034 kB] 278s Get:95 http://ftpmaster.internal/ubuntu resolute/main s390x libtheoradec1 s390x 1.2.0~alpha1+dfsg-6 [68.6 kB] 278s Get:96 http://ftpmaster.internal/ubuntu resolute/main s390x libtheoraenc1 s390x 1.2.0~alpha1+dfsg-6 [142 kB] 278s Get:97 http://ftpmaster.internal/ubuntu resolute/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 278s Get:98 http://ftpmaster.internal/ubuntu resolute/main s390x x11-common all 1:7.7+24ubuntu1 [22.4 kB] 278s Get:99 http://ftpmaster.internal/ubuntu resolute/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 278s Get:100 http://ftpmaster.internal/ubuntu resolute/main s390x libtk8.6 s390x 8.6.17-1 [828 kB] 278s Get:101 http://ftpmaster.internal/ubuntu resolute/universe s390x libvtk9.3 s390x 9.3.0+dfsg1-4ubuntu2 [27.1 MB] 279s Get:102 http://ftpmaster.internal/ubuntu resolute/universe s390x liblammps0t64 s390x 20250204+dfsg.1-2 [8532 kB] 280s Get:103 http://ftpmaster.internal/ubuntu resolute/universe s390x openmpi-common all 5.0.8-8ubuntu1 [108 kB] 280s Get:104 http://ftpmaster.internal/ubuntu resolute/main s390x libnl-3-dev s390x 3.7.0-2build1 [102 kB] 280s Get:105 http://ftpmaster.internal/ubuntu resolute/main s390x libnl-route-3-dev s390x 3.7.0-2build1 [213 kB] 280s Get:106 http://ftpmaster.internal/ubuntu resolute/main s390x libibverbs-dev s390x 56.1-1ubuntu1 [716 kB] 280s Get:107 http://ftpmaster.internal/ubuntu resolute/main s390x libnuma-dev s390x 2.0.19-1 [38.5 kB] 280s Get:108 http://ftpmaster.internal/ubuntu resolute/main s390x libltdl7 s390x 2.5.4-4build1 [43.9 kB] 280s Get:109 http://ftpmaster.internal/ubuntu resolute/main s390x libltdl-dev s390x 2.5.4-4build1 [173 kB] 280s Get:110 http://ftpmaster.internal/ubuntu resolute/universe s390x libhwloc-dev s390x 2.12.2-1 [273 kB] 280s Get:111 http://ftpmaster.internal/ubuntu resolute/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu2 [897 kB] 280s Get:112 http://ftpmaster.internal/ubuntu resolute/universe s390x openmpi-bin s390x 5.0.8-8ubuntu1 [199 kB] 280s Get:113 http://ftpmaster.internal/ubuntu resolute/universe s390x libopenmpi-dev s390x 5.0.8-8ubuntu1 [1162 kB] 280s Get:114 http://ftpmaster.internal/ubuntu resolute/universe s390x mpi-default-dev s390x 1.18 [3324 B] 280s Get:115 http://ftpmaster.internal/ubuntu resolute/universe s390x liblammps-dev s390x 20250204+dfsg.1-2 [114 kB] 280s Get:116 http://ftpmaster.internal/ubuntu resolute/universe s390x mpi-default-bin s390x 1.18 [2510 B] 280s Get:117 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-lammps s390x 20250204+dfsg.1-2 [75.3 kB] 280s Fetched 127 MB in 8s (15.4 MB/s) 280s Selecting previously unselected package m4. 281s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56852 files and directories currently installed.) 281s Preparing to unpack .../000-m4_1.4.19-8_s390x.deb ... 281s Unpacking m4 (1.4.19-8) ... 281s Selecting previously unselected package autoconf. 281s Preparing to unpack .../001-autoconf_2.72-3.1ubuntu1_all.deb ... 281s Unpacking autoconf (2.72-3.1ubuntu1) ... 281s Selecting previously unselected package autotools-dev. 281s Preparing to unpack .../002-autotools-dev_20240727.1_all.deb ... 281s Unpacking autotools-dev (20240727.1) ... 281s Selecting previously unselected package automake. 281s Preparing to unpack .../003-automake_1%3a1.17-4ubuntu1_all.deb ... 281s Unpacking automake (1:1.17-4ubuntu1) ... 281s Selecting previously unselected package libisl23:s390x. 281s Preparing to unpack .../004-libisl23_0.27-1_s390x.deb ... 281s Unpacking libisl23:s390x (0.27-1) ... 281s Selecting previously unselected package libmpc3:s390x. 281s Preparing to unpack .../005-libmpc3_1.3.1-1build3_s390x.deb ... 281s Unpacking libmpc3:s390x (1.3.1-1build3) ... 281s Selecting previously unselected package cpp-15-s390x-linux-gnu. 281s Preparing to unpack .../006-cpp-15-s390x-linux-gnu_15.2.0-5ubuntu1_s390x.deb ... 281s Unpacking cpp-15-s390x-linux-gnu (15.2.0-5ubuntu1) ... 281s Selecting previously unselected package cpp-15. 281s Preparing to unpack .../007-cpp-15_15.2.0-5ubuntu1_s390x.deb ... 281s Unpacking cpp-15 (15.2.0-5ubuntu1) ... 281s Selecting previously unselected package fonts-dejavu-mono. 281s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ... 281s Unpacking fonts-dejavu-mono (2.37-8) ... 281s Selecting previously unselected package fonts-dejavu-core. 281s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ... 281s Unpacking fonts-dejavu-core (2.37-8) ... 281s Selecting previously unselected package fontconfig-config. 281s Preparing to unpack .../010-fontconfig-config_2.15.0-2.3ubuntu1_s390x.deb ... 281s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 281s Selecting previously unselected package libcc1-0:s390x. 281s Preparing to unpack .../011-libcc1-0_15.2.0-5ubuntu1_s390x.deb ... 281s Unpacking libcc1-0:s390x (15.2.0-5ubuntu1) ... 281s Selecting previously unselected package libgomp1:s390x. 281s Preparing to unpack .../012-libgomp1_15.2.0-5ubuntu1_s390x.deb ... 281s Unpacking libgomp1:s390x (15.2.0-5ubuntu1) ... 281s Selecting previously unselected package libitm1:s390x. 281s Preparing to unpack .../013-libitm1_15.2.0-5ubuntu1_s390x.deb ... 281s Unpacking libitm1:s390x (15.2.0-5ubuntu1) ... 281s Selecting previously unselected package libasan8:s390x. 281s Preparing to unpack .../014-libasan8_15.2.0-5ubuntu1_s390x.deb ... 281s Unpacking libasan8:s390x (15.2.0-5ubuntu1) ... 281s Selecting previously unselected package libubsan1:s390x. 281s Preparing to unpack .../015-libubsan1_15.2.0-5ubuntu1_s390x.deb ... 281s Unpacking libubsan1:s390x (15.2.0-5ubuntu1) ... 281s Selecting previously unselected package libgcc-15-dev:s390x. 281s Preparing to unpack .../016-libgcc-15-dev_15.2.0-5ubuntu1_s390x.deb ... 281s Unpacking libgcc-15-dev:s390x (15.2.0-5ubuntu1) ... 281s Selecting previously unselected package gcc-15-s390x-linux-gnu. 281s Preparing to unpack .../017-gcc-15-s390x-linux-gnu_15.2.0-5ubuntu1_s390x.deb ... 281s Unpacking gcc-15-s390x-linux-gnu (15.2.0-5ubuntu1) ... 281s Selecting previously unselected package gcc-15. 281s Preparing to unpack .../018-gcc-15_15.2.0-5ubuntu1_s390x.deb ... 281s Unpacking gcc-15 (15.2.0-5ubuntu1) ... 281s Selecting previously unselected package libgfortran5:s390x. 281s Preparing to unpack .../019-libgfortran5_15.2.0-5ubuntu1_s390x.deb ... 281s Unpacking libgfortran5:s390x (15.2.0-5ubuntu1) ... 281s Selecting previously unselected package libgfortran-15-dev:s390x. 281s Preparing to unpack .../020-libgfortran-15-dev_15.2.0-5ubuntu1_s390x.deb ... 281s Unpacking libgfortran-15-dev:s390x (15.2.0-5ubuntu1) ... 281s Selecting previously unselected package gfortran-15-s390x-linux-gnu. 281s Preparing to unpack .../021-gfortran-15-s390x-linux-gnu_15.2.0-5ubuntu1_s390x.deb ... 281s Unpacking gfortran-15-s390x-linux-gnu (15.2.0-5ubuntu1) ... 282s Selecting previously unselected package gfortran-15. 282s Preparing to unpack .../022-gfortran-15_15.2.0-5ubuntu1_s390x.deb ... 282s Unpacking gfortran-15 (15.2.0-5ubuntu1) ... 282s Selecting previously unselected package libaec0:s390x. 282s Preparing to unpack .../023-libaec0_1.1.3-1_s390x.deb ... 282s Unpacking libaec0:s390x (1.1.3-1) ... 282s Selecting previously unselected package libblas3:s390x. 282s Preparing to unpack .../024-libblas3_3.12.1-6build1_s390x.deb ... 282s Unpacking libblas3:s390x (3.12.1-6build1) ... 282s Selecting previously unselected package libfreetype6:s390x. 282s Preparing to unpack .../025-libfreetype6_2.13.3+dfsg-1build1_s390x.deb ... 282s Unpacking libfreetype6:s390x (2.13.3+dfsg-1build1) ... 282s Selecting previously unselected package libfontconfig1:s390x. 282s Preparing to unpack .../026-libfontconfig1_2.15.0-2.3ubuntu1_s390x.deb ... 282s Unpacking libfontconfig1:s390x (2.15.0-2.3ubuntu1) ... 282s Selecting previously unselected package libpixman-1-0:s390x. 282s Preparing to unpack .../027-libpixman-1-0_0.44.0-3_s390x.deb ... 282s Unpacking libpixman-1-0:s390x (0.44.0-3) ... 282s Selecting previously unselected package libxcb-render0:s390x. 282s Preparing to unpack .../028-libxcb-render0_1.17.0-2build1_s390x.deb ... 282s Unpacking libxcb-render0:s390x (1.17.0-2build1) ... 282s Selecting previously unselected package libxcb-shm0:s390x. 282s Preparing to unpack .../029-libxcb-shm0_1.17.0-2build1_s390x.deb ... 282s Unpacking libxcb-shm0:s390x (1.17.0-2build1) ... 282s Selecting previously unselected package libxrender1:s390x. 282s Preparing to unpack .../030-libxrender1_1%3a0.9.12-1_s390x.deb ... 282s Unpacking libxrender1:s390x (1:0.9.12-1) ... 282s Selecting previously unselected package libcairo2:s390x. 282s Preparing to unpack .../031-libcairo2_1.18.4-1build1_s390x.deb ... 282s Unpacking libcairo2:s390x (1.18.4-1build1) ... 282s Selecting previously unselected package libdeflate0:s390x. 282s Preparing to unpack .../032-libdeflate0_1.23-2_s390x.deb ... 282s Unpacking libdeflate0:s390x (1.23-2) ... 282s Selecting previously unselected package libdouble-conversion3:s390x. 282s Preparing to unpack .../033-libdouble-conversion3_3.3.1-1build1_s390x.deb ... 282s Unpacking libdouble-conversion3:s390x (3.3.1-1build1) ... 282s Selecting previously unselected package libdrm-amdgpu1:s390x. 282s Preparing to unpack .../034-libdrm-amdgpu1_2.4.125-1_s390x.deb ... 282s Unpacking libdrm-amdgpu1:s390x (2.4.125-1) ... 282s Selecting previously unselected package libevent-2.1-7t64:s390x. 282s Preparing to unpack .../035-libevent-2.1-7t64_2.1.12-stable-10build1_s390x.deb ... 282s Unpacking libevent-2.1-7t64:s390x (2.1.12-stable-10build1) ... 282s Selecting previously unselected package libevent-core-2.1-7t64:s390x. 282s Preparing to unpack .../036-libevent-core-2.1-7t64_2.1.12-stable-10build1_s390x.deb ... 282s Unpacking libevent-core-2.1-7t64:s390x (2.1.12-stable-10build1) ... 282s Selecting previously unselected package libevent-extra-2.1-7t64:s390x. 282s Preparing to unpack .../037-libevent-extra-2.1-7t64_2.1.12-stable-10build1_s390x.deb ... 282s Unpacking libevent-extra-2.1-7t64:s390x (2.1.12-stable-10build1) ... 282s Selecting previously unselected package libevent-pthreads-2.1-7t64:s390x. 282s Preparing to unpack .../038-libevent-pthreads-2.1-7t64_2.1.12-stable-10build1_s390x.deb ... 282s Unpacking libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-10build1) ... 282s Selecting previously unselected package libevent-openssl-2.1-7t64:s390x. 282s Preparing to unpack .../039-libevent-openssl-2.1-7t64_2.1.12-stable-10build1_s390x.deb ... 282s Unpacking libevent-openssl-2.1-7t64:s390x (2.1.12-stable-10build1) ... 282s Selecting previously unselected package libevent-dev. 282s Preparing to unpack .../040-libevent-dev_2.1.12-stable-10build1_s390x.deb ... 282s Unpacking libevent-dev (2.1.12-stable-10build1) ... 282s Selecting previously unselected package librdmacm1t64:s390x. 282s Preparing to unpack .../041-librdmacm1t64_56.1-1ubuntu1_s390x.deb ... 282s Unpacking librdmacm1t64:s390x (56.1-1ubuntu1) ... 282s Selecting previously unselected package libfabric1:s390x. 282s Preparing to unpack .../042-libfabric1_2.1.0-1.1_s390x.deb ... 282s Unpacking libfabric1:s390x (2.1.0-1.1) ... 282s Selecting previously unselected package libfftw3-double3:s390x. 282s Preparing to unpack .../043-libfftw3-double3_3.3.10-2fakesync1build2_s390x.deb ... 282s Unpacking libfftw3-double3:s390x (3.3.10-2fakesync1build2) ... 282s Selecting previously unselected package libx11-xcb1:s390x. 282s Preparing to unpack .../044-libx11-xcb1_2%3a1.8.12-1build1_s390x.deb ... 282s Unpacking libx11-xcb1:s390x (2:1.8.12-1build1) ... 282s Selecting previously unselected package libxcb-dri3-0:s390x. 282s Preparing to unpack .../045-libxcb-dri3-0_1.17.0-2build1_s390x.deb ... 282s Unpacking libxcb-dri3-0:s390x (1.17.0-2build1) ... 282s Selecting previously unselected package libxcb-present0:s390x. 282s Preparing to unpack .../046-libxcb-present0_1.17.0-2build1_s390x.deb ... 282s Unpacking libxcb-present0:s390x (1.17.0-2build1) ... 282s Selecting previously unselected package libxcb-randr0:s390x. 282s Preparing to unpack .../047-libxcb-randr0_1.17.0-2build1_s390x.deb ... 282s Unpacking libxcb-randr0:s390x (1.17.0-2build1) ... 282s Selecting previously unselected package libxcb-sync1:s390x. 282s Preparing to unpack .../048-libxcb-sync1_1.17.0-2build1_s390x.deb ... 282s Unpacking libxcb-sync1:s390x (1.17.0-2build1) ... 282s Selecting previously unselected package libxcb-xfixes0:s390x. 282s Preparing to unpack .../049-libxcb-xfixes0_1.17.0-2build1_s390x.deb ... 282s Unpacking libxcb-xfixes0:s390x (1.17.0-2build1) ... 282s Selecting previously unselected package libxshmfence1:s390x. 282s Preparing to unpack .../050-libxshmfence1_1.3.3-1_s390x.deb ... 282s Unpacking libxshmfence1:s390x (1.3.3-1) ... 282s Selecting previously unselected package mesa-libgallium:s390x. 282s Preparing to unpack .../051-mesa-libgallium_25.2.3-1ubuntu1_s390x.deb ... 282s Unpacking mesa-libgallium:s390x (25.2.3-1ubuntu1) ... 282s Selecting previously unselected package libgbm1:s390x. 282s Preparing to unpack .../052-libgbm1_25.2.3-1ubuntu1_s390x.deb ... 282s Unpacking libgbm1:s390x (25.2.3-1ubuntu1) ... 282s Selecting previously unselected package libvulkan1:s390x. 282s Preparing to unpack .../053-libvulkan1_1.4.321.0-1_s390x.deb ... 282s Unpacking libvulkan1:s390x (1.4.321.0-1) ... 282s Selecting previously unselected package libgl1-mesa-dri:s390x. 282s Preparing to unpack .../054-libgl1-mesa-dri_25.2.3-1ubuntu1_s390x.deb ... 282s Unpacking libgl1-mesa-dri:s390x (25.2.3-1ubuntu1) ... 282s Selecting previously unselected package libglvnd0:s390x. 282s Preparing to unpack .../055-libglvnd0_1.7.0-1build2_s390x.deb ... 282s Unpacking libglvnd0:s390x (1.7.0-1build2) ... 282s Selecting previously unselected package libxcb-glx0:s390x. 282s Preparing to unpack .../056-libxcb-glx0_1.17.0-2build1_s390x.deb ... 282s Unpacking libxcb-glx0:s390x (1.17.0-2build1) ... 282s Selecting previously unselected package libxxf86vm1:s390x. 282s Preparing to unpack .../057-libxxf86vm1_1%3a1.1.4-1build4_s390x.deb ... 282s Unpacking libxxf86vm1:s390x (1:1.1.4-1build4) ... 282s Selecting previously unselected package libglx-mesa0:s390x. 282s Preparing to unpack .../058-libglx-mesa0_25.2.3-1ubuntu1_s390x.deb ... 282s Unpacking libglx-mesa0:s390x (25.2.3-1ubuntu1) ... 282s Selecting previously unselected package libglx0:s390x. 282s Preparing to unpack .../059-libglx0_1.7.0-1build2_s390x.deb ... 282s Unpacking libglx0:s390x (1.7.0-1build2) ... 282s Selecting previously unselected package libgl1:s390x. 282s Preparing to unpack .../060-libgl1_1.7.0-1build2_s390x.deb ... 282s Unpacking libgl1:s390x (1.7.0-1build2) ... 282s Selecting previously unselected package libgl2ps1.4. 282s Preparing to unpack .../061-libgl2ps1.4_1.4.2+dfsg1-2build1_s390x.deb ... 282s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 282s Selecting previously unselected package libglew2.2:s390x. 282s Preparing to unpack .../062-libglew2.2_2.2.0-4build1_s390x.deb ... 282s Unpacking libglew2.2:s390x (2.2.0-4build1) ... 282s Selecting previously unselected package libsz2:s390x. 282s Preparing to unpack .../063-libsz2_1.1.3-1_s390x.deb ... 282s Unpacking libsz2:s390x (1.1.3-1) ... 282s Selecting previously unselected package libhdf5-310:s390x. 282s Preparing to unpack .../064-libhdf5-310_1.14.5+repack-3build1_s390x.deb ... 282s Unpacking libhdf5-310:s390x (1.14.5+repack-3build1) ... 282s Selecting previously unselected package libhdf5-hl-310:s390x. 282s Preparing to unpack .../065-libhdf5-hl-310_1.14.5+repack-3build1_s390x.deb ... 282s Unpacking libhdf5-hl-310:s390x (1.14.5+repack-3build1) ... 282s Selecting previously unselected package libhwloc15:s390x. 282s Preparing to unpack .../066-libhwloc15_2.12.2-1_s390x.deb ... 282s Unpacking libhwloc15:s390x (2.12.2-1) ... 282s Selecting previously unselected package libjpeg-turbo8:s390x. 282s Preparing to unpack .../067-libjpeg-turbo8_2.1.5-4ubuntu2_s390x.deb ... 282s Unpacking libjpeg-turbo8:s390x (2.1.5-4ubuntu2) ... 282s Selecting previously unselected package libjpeg8:s390x. 282s Preparing to unpack .../068-libjpeg8_8c-2ubuntu11_s390x.deb ... 282s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 282s Selecting previously unselected package libjs-jquery. 282s Preparing to unpack .../069-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 282s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 282s Selecting previously unselected package libjs-jquery-ui. 282s Preparing to unpack .../070-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 282s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 282s Selecting previously unselected package libjsoncpp26:s390x. 282s Preparing to unpack .../071-libjsoncpp26_1.9.6-3_s390x.deb ... 282s Unpacking libjsoncpp26:s390x (1.9.6-3) ... 282s Selecting previously unselected package libkim-api2:s390x. 282s Preparing to unpack .../072-libkim-api2_2.3.0-1ubuntu1_s390x.deb ... 282s Unpacking libkim-api2:s390x (2.3.0-1ubuntu1) ... 282s Selecting previously unselected package liblapack3:s390x. 282s Preparing to unpack .../073-liblapack3_3.12.1-6build1_s390x.deb ... 282s Unpacking liblapack3:s390x (3.12.1-6build1) ... 282s Selecting previously unselected package libnetcdf22:s390x. 282s Preparing to unpack .../074-libnetcdf22_1%3a4.9.3-1build1_s390x.deb ... 282s Unpacking libnetcdf22:s390x (1:4.9.3-1build1) ... 282s Selecting previously unselected package libpciaccess0:s390x. 282s Preparing to unpack .../075-libpciaccess0_0.18.1-1ubuntu2_s390x.deb ... 282s Unpacking libpciaccess0:s390x (0.18.1-1ubuntu2) ... 282s Selecting previously unselected package libxnvctrl0:s390x. 282s Preparing to unpack .../076-libxnvctrl0_510.47.03-0ubuntu4_s390x.deb ... 282s Unpacking libxnvctrl0:s390x (510.47.03-0ubuntu4) ... 282s Selecting previously unselected package ocl-icd-libopencl1:s390x. 282s Preparing to unpack .../077-ocl-icd-libopencl1_2.3.3-1_s390x.deb ... 282s Unpacking ocl-icd-libopencl1:s390x (2.3.3-1) ... 282s Selecting previously unselected package libhwloc-plugins:s390x. 282s Preparing to unpack .../078-libhwloc-plugins_2.12.2-1_s390x.deb ... 282s Unpacking libhwloc-plugins:s390x (2.12.2-1) ... 282s Selecting previously unselected package libopenmpi40:s390x. 282s Preparing to unpack .../079-libopenmpi40_5.0.8-8ubuntu1_s390x.deb ... 282s Unpacking libopenmpi40:s390x (5.0.8-8ubuntu1) ... 283s Selecting previously unselected package libpnetcdf6:s390x. 283s Preparing to unpack .../080-libpnetcdf6_1.14.0-2_s390x.deb ... 283s Unpacking libpnetcdf6:s390x (1.14.0-2) ... 283s Selecting previously unselected package libvoro++1. 283s Preparing to unpack .../081-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_s390x.deb ... 283s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 283s Selecting previously unselected package libogg0:s390x. 283s Preparing to unpack .../082-libogg0_1.3.5-3build1_s390x.deb ... 283s Unpacking libogg0:s390x (1.3.5-3build1) ... 283s Selecting previously unselected package libopengl0:s390x. 283s Preparing to unpack .../083-libopengl0_1.7.0-1build2_s390x.deb ... 283s Unpacking libopengl0:s390x (1.7.0-1build2) ... 283s Selecting previously unselected package proj-data. 283s Preparing to unpack .../084-proj-data_9.6.0-1_all.deb ... 283s Unpacking proj-data (9.6.0-1) ... 283s Selecting previously unselected package libjbig0:s390x. 283s Preparing to unpack .../085-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 283s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 283s Selecting previously unselected package libsharpyuv0:s390x. 283s Preparing to unpack .../086-libsharpyuv0_1.5.0-0.1_s390x.deb ... 283s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ... 283s Selecting previously unselected package libwebp7:s390x. 283s Preparing to unpack .../087-libwebp7_1.5.0-0.1_s390x.deb ... 283s Unpacking libwebp7:s390x (1.5.0-0.1) ... 283s Selecting previously unselected package libtiff6:s390x. 283s Preparing to unpack .../088-libtiff6_4.7.0-3ubuntu3_s390x.deb ... 283s Unpacking libtiff6:s390x (4.7.0-3ubuntu3) ... 283s Selecting previously unselected package libproj25:s390x. 283s Preparing to unpack .../089-libproj25_9.6.0-1_s390x.deb ... 283s Unpacking libproj25:s390x (9.6.0-1) ... 283s Selecting previously unselected package libtbbbind-2-5:s390x. 283s Preparing to unpack .../090-libtbbbind-2-5_2022.1.0-1_s390x.deb ... 283s Unpacking libtbbbind-2-5:s390x (2022.1.0-1) ... 283s Selecting previously unselected package libtbbmalloc2:s390x. 283s Preparing to unpack .../091-libtbbmalloc2_2022.1.0-1_s390x.deb ... 283s Unpacking libtbbmalloc2:s390x (2022.1.0-1) ... 283s Selecting previously unselected package libtbb12:s390x. 283s Preparing to unpack .../092-libtbb12_2022.1.0-1_s390x.deb ... 283s Unpacking libtbb12:s390x (2022.1.0-1) ... 283s Selecting previously unselected package libtcl8.6:s390x. 283s Preparing to unpack .../093-libtcl8.6_8.6.17+dfsg-1_s390x.deb ... 283s Unpacking libtcl8.6:s390x (8.6.17+dfsg-1) ... 283s Selecting previously unselected package libtheoradec1:s390x. 283s Preparing to unpack .../094-libtheoradec1_1.2.0~alpha1+dfsg-6_s390x.deb ... 283s Unpacking libtheoradec1:s390x (1.2.0~alpha1+dfsg-6) ... 283s Selecting previously unselected package libtheoraenc1:s390x. 283s Preparing to unpack .../095-libtheoraenc1_1.2.0~alpha1+dfsg-6_s390x.deb ... 283s Unpacking libtheoraenc1:s390x (1.2.0~alpha1+dfsg-6) ... 283s Selecting previously unselected package libxft2:s390x. 283s Preparing to unpack .../096-libxft2_2.3.6-1build1_s390x.deb ... 283s Unpacking libxft2:s390x (2.3.6-1build1) ... 283s Selecting previously unselected package x11-common. 283s Preparing to unpack .../097-x11-common_1%3a7.7+24ubuntu1_all.deb ... 283s Unpacking x11-common (1:7.7+24ubuntu1) ... 283s Selecting previously unselected package libxss1:s390x. 283s Preparing to unpack .../098-libxss1_1%3a1.2.3-1build3_s390x.deb ... 283s Unpacking libxss1:s390x (1:1.2.3-1build3) ... 283s Selecting previously unselected package libtk8.6:s390x. 283s Preparing to unpack .../099-libtk8.6_8.6.17-1_s390x.deb ... 283s Unpacking libtk8.6:s390x (8.6.17-1) ... 283s Selecting previously unselected package libvtk9.3:s390x. 283s Preparing to unpack .../100-libvtk9.3_9.3.0+dfsg1-4ubuntu2_s390x.deb ... 283s Unpacking libvtk9.3:s390x (9.3.0+dfsg1-4ubuntu2) ... 285s Selecting previously unselected package liblammps0t64:s390x. 285s Preparing to unpack .../101-liblammps0t64_20250204+dfsg.1-2_s390x.deb ... 285s Unpacking liblammps0t64:s390x (20250204+dfsg.1-2) ... 285s Selecting previously unselected package openmpi-common. 285s Preparing to unpack .../102-openmpi-common_5.0.8-8ubuntu1_all.deb ... 285s Unpacking openmpi-common (5.0.8-8ubuntu1) ... 285s Selecting previously unselected package libnl-3-dev:s390x. 285s Preparing to unpack .../103-libnl-3-dev_3.7.0-2build1_s390x.deb ... 285s Unpacking libnl-3-dev:s390x (3.7.0-2build1) ... 285s Selecting previously unselected package libnl-route-3-dev:s390x. 285s Preparing to unpack .../104-libnl-route-3-dev_3.7.0-2build1_s390x.deb ... 285s Unpacking libnl-route-3-dev:s390x (3.7.0-2build1) ... 285s Selecting previously unselected package libibverbs-dev:s390x. 285s Preparing to unpack .../105-libibverbs-dev_56.1-1ubuntu1_s390x.deb ... 285s Unpacking libibverbs-dev:s390x (56.1-1ubuntu1) ... 285s Selecting previously unselected package libnuma-dev:s390x. 285s Preparing to unpack .../106-libnuma-dev_2.0.19-1_s390x.deb ... 285s Unpacking libnuma-dev:s390x (2.0.19-1) ... 285s Selecting previously unselected package libltdl7:s390x. 285s Preparing to unpack .../107-libltdl7_2.5.4-4build1_s390x.deb ... 285s Unpacking libltdl7:s390x (2.5.4-4build1) ... 285s Selecting previously unselected package libltdl-dev:s390x. 285s Preparing to unpack .../108-libltdl-dev_2.5.4-4build1_s390x.deb ... 285s Unpacking libltdl-dev:s390x (2.5.4-4build1) ... 285s Selecting previously unselected package libhwloc-dev:s390x. 285s Preparing to unpack .../109-libhwloc-dev_2.12.2-1_s390x.deb ... 285s Unpacking libhwloc-dev:s390x (2.12.2-1) ... 285s Selecting previously unselected package zlib1g-dev:s390x. 285s Preparing to unpack .../110-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_s390x.deb ... 285s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 285s Selecting previously unselected package openmpi-bin. 285s Preparing to unpack .../111-openmpi-bin_5.0.8-8ubuntu1_s390x.deb ... 285s Unpacking openmpi-bin (5.0.8-8ubuntu1) ... 285s Selecting previously unselected package libopenmpi-dev:s390x. 285s Preparing to unpack .../112-libopenmpi-dev_5.0.8-8ubuntu1_s390x.deb ... 285s Unpacking libopenmpi-dev:s390x (5.0.8-8ubuntu1) ... 285s Selecting previously unselected package mpi-default-dev. 285s Preparing to unpack .../113-mpi-default-dev_1.18_s390x.deb ... 285s Unpacking mpi-default-dev (1.18) ... 285s Selecting previously unselected package liblammps-dev. 285s Preparing to unpack .../114-liblammps-dev_20250204+dfsg.1-2_s390x.deb ... 285s Unpacking liblammps-dev (20250204+dfsg.1-2) ... 285s Selecting previously unselected package mpi-default-bin. 285s Preparing to unpack .../115-mpi-default-bin_1.18_s390x.deb ... 285s Unpacking mpi-default-bin (1.18) ... 285s Selecting previously unselected package python3-lammps. 285s Preparing to unpack .../116-python3-lammps_20250204+dfsg.1-2_s390x.deb ... 285s Unpacking python3-lammps (20250204+dfsg.1-2) ... 285s Setting up libxcb-dri3-0:s390x (1.17.0-2build1) ... 285s Setting up libtbbmalloc2:s390x (2022.1.0-1) ... 285s Setting up libpixman-1-0:s390x (0.44.0-3) ... 285s Setting up libsharpyuv0:s390x (1.5.0-0.1) ... 285s Setting up libx11-xcb1:s390x (2:1.8.12-1build1) ... 285s Setting up libpciaccess0:s390x (0.18.1-1ubuntu2) ... 285s Setting up libdouble-conversion3:s390x (3.3.1-1build1) ... 285s Setting up libxcb-xfixes0:s390x (1.17.0-2build1) ... 285s Setting up libogg0:s390x (1.3.5-3build1) ... 285s Setting up proj-data (9.6.0-1) ... 285s Setting up libxrender1:s390x (1:0.9.12-1) ... 285s Setting up libxcb-render0:s390x (1.17.0-2build1) ... 285s Setting up libglvnd0:s390x (1.7.0-1build2) ... 285s Setting up libxcb-glx0:s390x (1.17.0-2build1) ... 285s Setting up x11-common (1:7.7+24ubuntu1) ... 285s Setting up libdeflate0:s390x (1.23-2) ... 285s Setting up m4 (1.4.19-8) ... 285s Setting up libevent-2.1-7t64:s390x (2.1.12-stable-10build1) ... 285s Setting up libxcb-shm0:s390x (1.17.0-2build1) ... 285s Setting up libgomp1:s390x (15.2.0-5ubuntu1) ... 285s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 285s Setting up libaec0:s390x (1.1.3-1) ... 285s Setting up libopengl0:s390x (1.7.0-1build2) ... 285s Setting up libxxf86vm1:s390x (1:1.1.4-1build4) ... 285s Setting up libnuma-dev:s390x (2.0.19-1) ... 285s Setting up libxnvctrl0:s390x (510.47.03-0ubuntu4) ... 285s Setting up libxcb-present0:s390x (1.17.0-2build1) ... 285s Setting up libtheoraenc1:s390x (1.2.0~alpha1+dfsg-6) ... 285s Setting up autotools-dev (20240727.1) ... 285s Setting up libblas3:s390x (3.12.1-6build1) ... 285s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 285s Setting up libfreetype6:s390x (2.13.3+dfsg-1build1) ... 285s Setting up libxcb-sync1:s390x (1.17.0-2build1) ... 285s Setting up libjsoncpp26:s390x (1.9.6-3) ... 285s Setting up fonts-dejavu-mono (2.37-8) ... 285s Setting up libhwloc15:s390x (2.12.2-1) ... 285s Setting up libmpc3:s390x (1.3.1-1build3) ... 285s Setting up libtcl8.6:s390x (8.6.17+dfsg-1) ... 285s Setting up fonts-dejavu-core (2.37-8) ... 285s Setting up libjpeg-turbo8:s390x (2.1.5-4ubuntu2) ... 285s Setting up libltdl7:s390x (2.5.4-4build1) ... 285s Setting up libfftw3-double3:s390x (3.3.10-2fakesync1build2) ... 285s Setting up libgfortran5:s390x (15.2.0-5ubuntu1) ... 285s Setting up libvulkan1:s390x (1.4.321.0-1) ... 285s Setting up autoconf (2.72-3.1ubuntu1) ... 285s Setting up libwebp7:s390x (1.5.0-0.1) ... 285s Setting up libubsan1:s390x (15.2.0-5ubuntu1) ... 285s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 285s Setting up libnl-3-dev:s390x (3.7.0-2build1) ... 285s Setting up ocl-icd-libopencl1:s390x (2.3.3-1) ... 285s Setting up libxshmfence1:s390x (1.3.3-1) ... 285s Setting up libxcb-randr0:s390x (1.17.0-2build1) ... 285s Setting up libasan8:s390x (15.2.0-5ubuntu1) ... 285s Setting up openmpi-common (5.0.8-8ubuntu1) ... 285s Setting up librdmacm1t64:s390x (56.1-1ubuntu1) ... 285s Setting up libevent-core-2.1-7t64:s390x (2.1.12-stable-10build1) ... 285s Setting up libxss1:s390x (1:1.2.3-1build3) ... 285s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 285s Setting up libisl23:s390x (0.27-1) ... 285s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 285s Setting up libcc1-0:s390x (15.2.0-5ubuntu1) ... 285s Setting up libsz2:s390x (1.1.3-1) ... 285s Setting up libitm1:s390x (15.2.0-5ubuntu1) ... 285s Setting up libdrm-amdgpu1:s390x (2.4.125-1) ... 285s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 285s Setting up automake (1:1.17-4ubuntu1) ... 285s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode 285s Setting up libfabric1:s390x (2.1.0-1.1) ... 285s Setting up mesa-libgallium:s390x (25.2.3-1ubuntu1) ... 285s Setting up liblapack3:s390x (3.12.1-6build1) ... 285s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 285s Setting up libgcc-15-dev:s390x (15.2.0-5ubuntu1) ... 285s Setting up libgbm1:s390x (25.2.3-1ubuntu1) ... 285s Setting up libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-10build1) ... 285s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 285s Setting up libevent-openssl-2.1-7t64:s390x (2.1.12-stable-10build1) ... 285s Setting up libgl1-mesa-dri:s390x (25.2.3-1ubuntu1) ... 285s Setting up libkim-api2:s390x (2.3.0-1ubuntu1) ... 285s Setting up libhwloc-plugins:s390x (2.12.2-1) ... 285s Setting up libgfortran-15-dev:s390x (15.2.0-5ubuntu1) ... 285s Setting up libtbbbind-2-5:s390x (2022.1.0-1) ... 285s Setting up libnl-route-3-dev:s390x (3.7.0-2build1) ... 285s Setting up libltdl-dev:s390x (2.5.4-4build1) ... 285s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 285s Setting up libevent-extra-2.1-7t64:s390x (2.1.12-stable-10build1) ... 285s Setting up libhdf5-310:s390x (1.14.5+repack-3build1) ... 285s Setting up libtiff6:s390x (4.7.0-3ubuntu3) ... 285s Setting up cpp-15-s390x-linux-gnu (15.2.0-5ubuntu1) ... 285s Setting up libhwloc-dev:s390x (2.12.2-1) ... 285s Setting up libfontconfig1:s390x (2.15.0-2.3ubuntu1) ... 285s Setting up gcc-15-s390x-linux-gnu (15.2.0-5ubuntu1) ... 285s Setting up libopenmpi40:s390x (5.0.8-8ubuntu1) ... 285s Setting up libhdf5-hl-310:s390x (1.14.5+repack-3build1) ... 285s Setting up libxft2:s390x (2.3.6-1build1) ... 285s Setting up libglx-mesa0:s390x (25.2.3-1ubuntu1) ... 285s Setting up gfortran-15-s390x-linux-gnu (15.2.0-5ubuntu1) ... 285s Setting up libglx0:s390x (1.7.0-1build2) ... 285s Setting up libproj25:s390x (9.6.0-1) ... 285s Setting up libpnetcdf6:s390x (1.14.0-2) ... 285s Setting up libtk8.6:s390x (8.6.17-1) ... 285s Setting up libnetcdf22:s390x (1:4.9.3-1build1) ... 285s Setting up libtbb12:s390x (2022.1.0-1) ... 285s Setting up libibverbs-dev:s390x (56.1-1ubuntu1) ... 285s Setting up libcairo2:s390x (1.18.4-1build1) ... 285s Setting up libgl1:s390x (1.7.0-1build2) ... 285s Setting up libtheoradec1:s390x (1.2.0~alpha1+dfsg-6) ... 285s Setting up libevent-dev (2.1.12-stable-10build1) ... 285s Setting up libglew2.2:s390x (2.2.0-4build1) ... 285s Setting up cpp-15 (15.2.0-5ubuntu1) ... 285s Setting up openmpi-bin (5.0.8-8ubuntu1) ... 285s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 285s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 285s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 285s Setting up mpi-default-bin (1.18) ... 285s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 285s Setting up gcc-15 (15.2.0-5ubuntu1) ... 285s Setting up libvtk9.3:s390x (9.3.0+dfsg1-4ubuntu2) ... 285s Setting up gfortran-15 (15.2.0-5ubuntu1) ... 285s Setting up liblammps0t64:s390x (20250204+dfsg.1-2) ... 285s Setting up libopenmpi-dev:s390x (5.0.8-8ubuntu1) ... 285s update-alternatives: using /usr/lib/s390x-linux-gnu/openmpi/include to provide /usr/include/s390x-linux-gnu/mpi (mpi-s390x-linux-gnu) in auto mode 285s Setting up mpi-default-dev (1.18) ... 285s Setting up liblammps-dev (20250204+dfsg.1-2) ... 285s Setting up python3-lammps (20250204+dfsg.1-2) ... 285s Processing triggers for man-db (2.13.1-1) ... 285s Processing triggers for install-info (7.1.1-1ubuntu1) ... 285s Processing triggers for libc-bin (2.42-0ubuntu3) ... 307s autopkgtest [19:01:23]: test command1: cd python/examples; python3 demo.py 307s autopkgtest [19:01:23]: test command1: [----------------------- 307s LAMMPS (4 Feb 2025) 307s 307s Python output: 307s Natoms, mass, x[0][0] coord = 4000 1.0 0.2727243714666721 307s Temperature from compute = 0.750609109548371 307s Energy from equal-style variable = -5.748192616533703 307s Velocity component from atom-style variable = -0.008231833025308041 307s Volume from get_thermo = 4738.213693437576 307s Natoms from get_natoms = 4000 307s Global coords from gather_atoms = 0.2727243714666721 0.1442606170751015 0.02741951954247279 307s Changed x[0][0] via scatter_atoms = 1.272724371466672 307s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:99) 307s using 1 OpenMP thread(s) per MPI task 307s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 307s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 307s 1 by 1 by 1 MPI processor grid 307s Created 4000 atoms 307s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 307s create_atoms CPU = 0.001 seconds 307s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 307s Neighbor list info ... 307s update: every = 20 steps, delay = 0 steps, check = no 307s max neighbors/atom: 2000, page size: 100000 307s master list distance cutoff = 2.8 307s ghost atom cutoff = 2.8 307s binsize = 1.4, bins = 12 12 12 307s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 307s (1) pair lj/cut, perpetual 307s attributes: half, newton on 307s pair build: half/bin/atomonly/newton 307s stencil: half/bin/3d 307s bin: standard 307s Setting up Verlet run ... 307s Unit style : lj 307s Current step : 0 307s Time step : 0.005 307s Per MPI rank memory allocation (min/avg/max) = 3.763 | 3.763 | 3.763 Mbytes 307s Step Temp E_pair E_mol TotEng Press 307s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 307s 100 0.75060911 -5.7481926 0 -4.6225604 0.24772341 307s Loop time of 0.227376 on 1 procs for 100 steps with 4000 atoms 307s 307s Performance: 189993.932 tau/day, 439.801 timesteps/s, 1.759 Matom-step/s 307s 100.3% CPU use with 1 MPI tasks x 1 OpenMP threads 307s 307s MPI task timing breakdown: 307s Section | min time | avg time | max time |%varavg| %total 307s --------------------------------------------------------------- 307s Pair | 0.19083 | 0.19083 | 0.19083 | 0.0 | 83.93 307s Neigh | 0.029151 | 0.029151 | 0.029151 | 0.0 | 12.82 307s Comm | 0.003226 | 0.003226 | 0.003226 | 0.0 | 1.42 307s Output | 4.9054e-05 | 4.9054e-05 | 4.9054e-05 | 0.0 | 0.02 307s Modify | 0.0033972 | 0.0033972 | 0.0033972 | 0.0 | 1.49 307s Other | | 0.0007241 | | | 0.32 307s 307s Nlocal: 4000 ave 4000 max 4000 min 307s Histogram: 1 0 0 0 0 0 0 0 0 0 307s Nghost: 5770 ave 5770 max 5770 min 307s Histogram: 1 0 0 0 0 0 0 0 0 0 307s Neighs: 150293 ave 150293 max 150293 min 307s Histogram: 1 0 0 0 0 0 0 0 0 0 307s 307s Total # of neighbors = 150293 307s Ave neighs/atom = 37.57325 307s Neighbor list builds = 5 307s Dangerous builds not checked 307s Total wall time: 0:00:00 308s autopkgtest [19:01:24]: test command1: -----------------------] 308s command1 PASS 308s autopkgtest [19:01:24]: test command1: - - - - - - - - - - results - - - - - - - - - - 309s autopkgtest [19:01:25]: @@@@@@@@@@@@@@@@@@@@ summary 309s crack PASS 309s dipole PASS 309s ellipse PASS 309s flow PASS 309s friction PASS 309s hugo PASS 309s command1 PASS