0s autopkgtest [21:02:14]: starting date and time: 2025-10-25 21:02:14+0000 0s autopkgtest [21:02:14]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [21:02:14]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ngzrdp4p/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:rust-coreutils --apt-upgrade lambda-align2 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=rust-coreutils/0.3.0-0ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-11.secgroup --name adt-resolute-s390x-lambda-align2-20251025-210214-juju-7f2275-prod-proposed-migration-environment-2-3d73ac94-7349-454b-9cc7-56bf5f0dc8a6 --image adt/ubuntu-resolute-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-s390x-lambda-align2-20251025-210214-juju-7f2275-prod-proposed-migration-environment-2-3d73ac94-7349-454b-9cc7-56bf5f0dc8a6 from image adt/ubuntu-resolute-s390x-server-20251025.img (UUID 1456e811-6761-44a6-8067-f563d7b13b89)... 250s autopkgtest [21:06:24]: testbed dpkg architecture: s390x 250s autopkgtest [21:06:24]: testbed apt version: 3.1.8ubuntu1 250s autopkgtest [21:06:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup 251s autopkgtest [21:06:25]: testbed release detected to be: None 251s autopkgtest [21:06:25]: updating testbed package index (apt update) 252s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 252s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 252s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 252s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 252s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [16.5 kB] 252s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [60.2 kB] 252s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [455 kB] 252s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 252s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x Packages [149 kB] 252s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted s390x Packages [940 B] 252s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe s390x Packages [320 kB] 253s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse s390x Packages [4204 B] 253s Fetched 1098 kB in 1s (1100 kB/s) 253s Reading package lists... 254s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 254s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 254s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 254s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 255s Reading package lists... 255s Reading package lists... 255s Building dependency tree... 255s Reading state information... 255s Calculating upgrade... 255s The following packages will be upgraded: 255s bind9-dnsutils bind9-host bind9-libs libdrm-common libdrm2 python3-jwt 255s python3-openssl rust-coreutils 255s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 255s Need to get 5141 kB of archives. 255s After this operation, 1069 kB of additional disk space will be used. 255s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x rust-coreutils s390x 0.3.0-0ubuntu2 [3518 kB] 256s Get:2 http://ftpmaster.internal/ubuntu resolute/main s390x bind9-dnsutils s390x 1:9.20.11-1ubuntu3 [171 kB] 256s Get:3 http://ftpmaster.internal/ubuntu resolute/main s390x bind9-host s390x 1:9.20.11-1ubuntu3 [48.5 kB] 256s Get:4 http://ftpmaster.internal/ubuntu resolute/main s390x bind9-libs s390x 1:9.20.11-1ubuntu3 [1282 kB] 256s Get:5 http://ftpmaster.internal/ubuntu resolute/main s390x libdrm-common all 2.4.127-1ubuntu1 [9716 B] 256s Get:6 http://ftpmaster.internal/ubuntu resolute/main s390x libdrm2 s390x 2.4.127-1ubuntu1 [44.6 kB] 256s Get:7 http://ftpmaster.internal/ubuntu resolute/main s390x python3-jwt all 2.10.1-3 [21.1 kB] 256s Get:8 http://ftpmaster.internal/ubuntu resolute/main s390x python3-openssl all 25.1.0-1 [46.4 kB] 257s dpkg-preconfigure: unable to re-open stdin: No such file or directory 257s Fetched 5141 kB in 1s (3653 kB/s) 257s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56873 files and directories currently installed.) 257s Preparing to unpack .../rust-coreutils_0.3.0-0ubuntu2_s390x.deb ... 257s Unpacking rust-coreutils (0.3.0-0ubuntu2) over (0.2.2-0ubuntu2) ... 257s Setting up rust-coreutils (0.3.0-0ubuntu2) ... 257s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56933 files and directories currently installed.) 257s Preparing to unpack .../0-bind9-dnsutils_1%3a9.20.11-1ubuntu3_s390x.deb ... 257s Unpacking bind9-dnsutils (1:9.20.11-1ubuntu3) over (1:9.20.11-1ubuntu2) ... 257s Preparing to unpack .../1-bind9-host_1%3a9.20.11-1ubuntu3_s390x.deb ... 257s Unpacking bind9-host (1:9.20.11-1ubuntu3) over (1:9.20.11-1ubuntu2) ... 257s Preparing to unpack .../2-bind9-libs_1%3a9.20.11-1ubuntu3_s390x.deb ... 257s Unpacking bind9-libs:s390x (1:9.20.11-1ubuntu3) over (1:9.20.11-1ubuntu2) ... 257s Preparing to unpack .../3-libdrm-common_2.4.127-1ubuntu1_all.deb ... 257s Unpacking libdrm-common (2.4.127-1ubuntu1) over (2.4.125-1) ... 257s Preparing to unpack .../4-libdrm2_2.4.127-1ubuntu1_s390x.deb ... 257s Unpacking libdrm2:s390x (2.4.127-1ubuntu1) over (2.4.125-1) ... 257s Preparing to unpack .../5-python3-jwt_2.10.1-3_all.deb ... 257s Unpacking python3-jwt (2.10.1-3) over (2.10.1-2) ... 257s Preparing to unpack .../6-python3-openssl_25.1.0-1_all.deb ... 257s Unpacking python3-openssl (25.1.0-1) over (25.0.0-1) ... 257s Setting up bind9-libs:s390x (1:9.20.11-1ubuntu3) ... 257s Setting up python3-jwt (2.10.1-3) ... 257s Setting up python3-openssl (25.1.0-1) ... 258s Setting up bind9-host (1:9.20.11-1ubuntu3) ... 258s Setting up libdrm-common (2.4.127-1ubuntu1) ... 258s Setting up libdrm2:s390x (2.4.127-1ubuntu1) ... 258s Setting up bind9-dnsutils (1:9.20.11-1ubuntu3) ... 258s Processing triggers for man-db (2.13.1-1) ... 258s Processing triggers for libc-bin (2.42-0ubuntu3) ... 258s autopkgtest [21:06:32]: upgrading testbed (apt dist-upgrade and autopurge) 258s Reading package lists... 258s Building dependency tree... 258s Reading state information... 258s Calculating upgrade... 259s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 259s Reading package lists... 259s Building dependency tree... 259s Reading state information... 259s Solving dependencies... 259s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 262s autopkgtest [21:06:36]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP Mon Sep 22 08:56:47 UTC 2025 262s autopkgtest [21:06:36]: @@@@@@@@@@@@@@@@@@@@ apt-source lambda-align2 263s Get:1 http://ftpmaster.internal/ubuntu resolute/universe lambda-align2 2.0.1-3 (dsc) [2178 B] 263s Get:2 http://ftpmaster.internal/ubuntu resolute/universe lambda-align2 2.0.1-3 (tar) [346 kB] 263s Get:3 http://ftpmaster.internal/ubuntu resolute/universe lambda-align2 2.0.1-3 (diff) [17.6 kB] 264s gpgv: Signature made Thu Nov 28 15:59:17 2024 UTC 264s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 264s gpgv: Can't check signature: No public key 264s dpkg-source: warning: cannot verify inline signature for ./lambda-align2_2.0.1-3.dsc: no acceptable signature found 264s autopkgtest [21:06:38]: testing package lambda-align2 version 2.0.1-3 264s autopkgtest [21:06:38]: build not needed 267s autopkgtest [21:06:41]: test run-tests: preparing testbed 267s Reading package lists... 267s Building dependency tree... 267s Reading state information... 267s Solving dependencies... 267s The following NEW packages will be installed: 267s autoconf automake autopoint autotools-dev build-essential cmake cmake-data 267s cpp cpp-15 cpp-15-s390x-linux-gnu cpp-s390x-linux-gnu debhelper debugedit 267s dh-autoreconf dh-strip-nondeterminism dwz g++ g++-15 g++-15-s390x-linux-gnu 267s g++-s390x-linux-gnu gcc gcc-15 gcc-15-s390x-linux-gnu gcc-s390x-linux-gnu 267s gettext intltool-debian lambda-align2 libarchive-zip-perl libasan8 267s libbz2-dev libcc1-0 libdebhelper-perl libfile-stripnondeterminism-perl 267s libgcc-15-dev libgomp1 libisl23 libitm1 libjsoncpp26 libmbedcrypto16 267s libmbedtls21 libmbedx509-7 libmpc3 librhash1 libseqan2-dev libstdc++-15-dev 267s libtool libubsan1 m4 ncbi-blast+ ncbi-data po-debconf zlib1g-dev 267s 0 upgraded, 52 newly installed, 0 to remove and 0 not upgraded. 267s Need to get 94.8 MB of archives. 267s After this operation, 341 MB of additional disk space will be used. 267s Get:1 http://ftpmaster.internal/ubuntu resolute/main s390x m4 s390x 1.4.19-8 [259 kB] 268s Get:2 http://ftpmaster.internal/ubuntu resolute/main s390x autoconf all 2.72-3.1ubuntu1 [384 kB] 268s Get:3 http://ftpmaster.internal/ubuntu resolute/main s390x autotools-dev all 20240727.1 [43.4 kB] 268s Get:4 http://ftpmaster.internal/ubuntu resolute/main s390x automake all 1:1.17-4ubuntu1 [572 kB] 268s Get:5 http://ftpmaster.internal/ubuntu resolute/main s390x autopoint all 0.23.1-2build2 [619 kB] 268s Get:6 http://ftpmaster.internal/ubuntu resolute/main s390x libisl23 s390x 0.27-1 [704 kB] 268s Get:7 http://ftpmaster.internal/ubuntu resolute/main s390x libmpc3 s390x 1.3.1-1build3 [57.6 kB] 268s Get:8 http://ftpmaster.internal/ubuntu resolute/main s390x cpp-15-s390x-linux-gnu s390x 15.2.0-5ubuntu1 [10.2 MB] 270s Get:9 http://ftpmaster.internal/ubuntu resolute/main s390x cpp-15 s390x 15.2.0-5ubuntu1 [1024 B] 270s Get:10 http://ftpmaster.internal/ubuntu resolute/main s390x cpp-s390x-linux-gnu s390x 4:15.2.0-4ubuntu1 [5746 B] 270s Get:11 http://ftpmaster.internal/ubuntu resolute/main s390x cpp s390x 4:15.2.0-4ubuntu1 [22.4 kB] 270s Get:12 http://ftpmaster.internal/ubuntu resolute/main s390x libcc1-0 s390x 15.2.0-5ubuntu1 [50.0 kB] 270s Get:13 http://ftpmaster.internal/ubuntu resolute/main s390x libgomp1 s390x 15.2.0-5ubuntu1 [154 kB] 270s Get:14 http://ftpmaster.internal/ubuntu resolute/main s390x libitm1 s390x 15.2.0-5ubuntu1 [30.9 kB] 270s Get:15 http://ftpmaster.internal/ubuntu resolute/main s390x libasan8 s390x 15.2.0-5ubuntu1 [2969 kB] 271s Get:16 http://ftpmaster.internal/ubuntu resolute/main s390x libubsan1 s390x 15.2.0-5ubuntu1 [1211 kB] 271s Get:17 http://ftpmaster.internal/ubuntu resolute/main s390x libgcc-15-dev s390x 15.2.0-5ubuntu1 [1045 kB] 271s Get:18 http://ftpmaster.internal/ubuntu resolute/main s390x gcc-15-s390x-linux-gnu s390x 15.2.0-5ubuntu1 [19.9 MB] 272s Get:19 http://ftpmaster.internal/ubuntu resolute/main s390x gcc-15 s390x 15.2.0-5ubuntu1 [512 kB] 272s Get:20 http://ftpmaster.internal/ubuntu resolute/main s390x gcc-s390x-linux-gnu s390x 4:15.2.0-4ubuntu1 [1208 B] 272s Get:21 http://ftpmaster.internal/ubuntu resolute/main s390x gcc s390x 4:15.2.0-4ubuntu1 [5018 B] 272s Get:22 http://ftpmaster.internal/ubuntu resolute/main s390x libstdc++-15-dev s390x 15.2.0-5ubuntu1 [2658 kB] 273s Get:23 http://ftpmaster.internal/ubuntu resolute/main s390x g++-15-s390x-linux-gnu s390x 15.2.0-5ubuntu1 [11.7 MB] 273s Get:24 http://ftpmaster.internal/ubuntu resolute/main s390x g++-15 s390x 15.2.0-5ubuntu1 [23.7 kB] 273s Get:25 http://ftpmaster.internal/ubuntu resolute/main s390x g++-s390x-linux-gnu s390x 4:15.2.0-4ubuntu1 [956 B] 273s Get:26 http://ftpmaster.internal/ubuntu resolute/main s390x g++ s390x 4:15.2.0-4ubuntu1 [1078 B] 273s Get:27 http://ftpmaster.internal/ubuntu resolute/main s390x build-essential s390x 12.12ubuntu1 [5090 B] 273s Get:28 http://ftpmaster.internal/ubuntu resolute/main s390x cmake-data all 3.31.6-2ubuntu6 [2295 kB] 273s Get:29 http://ftpmaster.internal/ubuntu resolute/main s390x libjsoncpp26 s390x 1.9.6-3 [80.8 kB] 273s Get:30 http://ftpmaster.internal/ubuntu resolute/main s390x librhash1 s390x 1.4.6-1 [137 kB] 273s Get:31 http://ftpmaster.internal/ubuntu resolute/main s390x cmake s390x 3.31.6-2ubuntu6 [13.2 MB] 274s Get:32 http://ftpmaster.internal/ubuntu resolute/main s390x libdebhelper-perl all 13.24.2ubuntu1 [95.7 kB] 274s Get:33 http://ftpmaster.internal/ubuntu resolute/main s390x libtool all 2.5.4-4build1 [169 kB] 274s Get:34 http://ftpmaster.internal/ubuntu resolute/main s390x dh-autoreconf all 21 [12.5 kB] 274s Get:35 http://ftpmaster.internal/ubuntu resolute/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB] 274s Get:36 http://ftpmaster.internal/ubuntu resolute/main s390x libfile-stripnondeterminism-perl all 1.14.2-1 [20.4 kB] 274s Get:37 http://ftpmaster.internal/ubuntu resolute/main s390x dh-strip-nondeterminism all 1.14.2-1 [5098 B] 274s Get:38 http://ftpmaster.internal/ubuntu resolute/main s390x debugedit s390x 1:5.2-3 [52.8 kB] 274s Get:39 http://ftpmaster.internal/ubuntu resolute/main s390x dwz s390x 0.16-2 [121 kB] 274s Get:40 http://ftpmaster.internal/ubuntu resolute/main s390x gettext s390x 0.23.1-2build2 [1062 kB] 274s Get:41 http://ftpmaster.internal/ubuntu resolute/main s390x intltool-debian all 0.35.0+20060710.6 [23.2 kB] 274s Get:42 http://ftpmaster.internal/ubuntu resolute/main s390x po-debconf all 1.0.21+nmu1 [233 kB] 274s Get:43 http://ftpmaster.internal/ubuntu resolute/main s390x debhelper all 13.24.2ubuntu1 [896 kB] 274s Get:44 http://ftpmaster.internal/ubuntu resolute/universe s390x lambda-align2 s390x 2.0.1-3 [1535 kB] 274s Get:45 http://ftpmaster.internal/ubuntu resolute/main s390x libbz2-dev s390x 1.0.8-6build1 [40.7 kB] 274s Get:46 http://ftpmaster.internal/ubuntu resolute/universe s390x libmbedcrypto16 s390x 3.6.2-3ubuntu1 [261 kB] 274s Get:47 http://ftpmaster.internal/ubuntu resolute/universe s390x libmbedx509-7 s390x 3.6.2-3ubuntu1 [34.9 kB] 274s Get:48 http://ftpmaster.internal/ubuntu resolute/universe s390x libmbedtls21 s390x 3.6.2-3ubuntu1 [122 kB] 274s Get:49 http://ftpmaster.internal/ubuntu resolute/universe s390x libseqan2-dev all 2.4.0+dfsg-16 [1206 kB] 274s Get:50 http://ftpmaster.internal/ubuntu resolute/universe s390x ncbi-data all 6.1.20170106+dfsg2-6 [3969 kB] 274s Get:51 http://ftpmaster.internal/ubuntu resolute/universe s390x ncbi-blast+ s390x 2.16.0+ds-7 [15.2 MB] 275s Get:52 http://ftpmaster.internal/ubuntu resolute/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu2 [897 kB] 275s Fetched 94.8 MB in 8s (11.9 MB/s) 275s Selecting previously unselected package m4. 275s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56933 files and directories currently installed.) 275s Preparing to unpack .../00-m4_1.4.19-8_s390x.deb ... 275s Unpacking m4 (1.4.19-8) ... 275s Selecting previously unselected package autoconf. 275s Preparing to unpack .../01-autoconf_2.72-3.1ubuntu1_all.deb ... 275s Unpacking autoconf (2.72-3.1ubuntu1) ... 275s Selecting previously unselected package autotools-dev. 275s Preparing to unpack .../02-autotools-dev_20240727.1_all.deb ... 275s Unpacking autotools-dev (20240727.1) ... 275s Selecting previously unselected package automake. 275s Preparing to unpack .../03-automake_1%3a1.17-4ubuntu1_all.deb ... 275s Unpacking automake (1:1.17-4ubuntu1) ... 275s Selecting previously unselected package autopoint. 275s Preparing to unpack .../04-autopoint_0.23.1-2build2_all.deb ... 275s Unpacking autopoint (0.23.1-2build2) ... 275s Selecting previously unselected package libisl23:s390x. 275s Preparing to unpack .../05-libisl23_0.27-1_s390x.deb ... 275s Unpacking libisl23:s390x (0.27-1) ... 275s Selecting previously unselected package libmpc3:s390x. 275s Preparing to unpack .../06-libmpc3_1.3.1-1build3_s390x.deb ... 275s Unpacking libmpc3:s390x (1.3.1-1build3) ... 275s Selecting previously unselected package cpp-15-s390x-linux-gnu. 275s Preparing to unpack .../07-cpp-15-s390x-linux-gnu_15.2.0-5ubuntu1_s390x.deb ... 275s Unpacking cpp-15-s390x-linux-gnu (15.2.0-5ubuntu1) ... 276s Selecting previously unselected package cpp-15. 276s Preparing to unpack .../08-cpp-15_15.2.0-5ubuntu1_s390x.deb ... 276s Unpacking cpp-15 (15.2.0-5ubuntu1) ... 276s Selecting previously unselected package cpp-s390x-linux-gnu. 276s Preparing to unpack .../09-cpp-s390x-linux-gnu_4%3a15.2.0-4ubuntu1_s390x.deb ... 276s Unpacking cpp-s390x-linux-gnu (4:15.2.0-4ubuntu1) ... 276s Selecting previously unselected package cpp. 276s Preparing to unpack .../10-cpp_4%3a15.2.0-4ubuntu1_s390x.deb ... 276s Unpacking cpp (4:15.2.0-4ubuntu1) ... 276s Selecting previously unselected package libcc1-0:s390x. 276s Preparing to unpack .../11-libcc1-0_15.2.0-5ubuntu1_s390x.deb ... 276s Unpacking libcc1-0:s390x (15.2.0-5ubuntu1) ... 276s Selecting previously unselected package libgomp1:s390x. 276s Preparing to unpack .../12-libgomp1_15.2.0-5ubuntu1_s390x.deb ... 276s Unpacking libgomp1:s390x (15.2.0-5ubuntu1) ... 276s Selecting previously unselected package libitm1:s390x. 276s Preparing to unpack .../13-libitm1_15.2.0-5ubuntu1_s390x.deb ... 276s Unpacking libitm1:s390x (15.2.0-5ubuntu1) ... 276s Selecting previously unselected package libasan8:s390x. 276s Preparing to unpack .../14-libasan8_15.2.0-5ubuntu1_s390x.deb ... 276s Unpacking libasan8:s390x (15.2.0-5ubuntu1) ... 276s Selecting previously unselected package libubsan1:s390x. 276s Preparing to unpack .../15-libubsan1_15.2.0-5ubuntu1_s390x.deb ... 276s Unpacking libubsan1:s390x (15.2.0-5ubuntu1) ... 276s Selecting previously unselected package libgcc-15-dev:s390x. 276s Preparing to unpack .../16-libgcc-15-dev_15.2.0-5ubuntu1_s390x.deb ... 276s Unpacking libgcc-15-dev:s390x (15.2.0-5ubuntu1) ... 276s Selecting previously unselected package gcc-15-s390x-linux-gnu. 276s Preparing to unpack .../17-gcc-15-s390x-linux-gnu_15.2.0-5ubuntu1_s390x.deb ... 276s Unpacking gcc-15-s390x-linux-gnu (15.2.0-5ubuntu1) ... 276s Selecting previously unselected package gcc-15. 276s Preparing to unpack .../18-gcc-15_15.2.0-5ubuntu1_s390x.deb ... 276s Unpacking gcc-15 (15.2.0-5ubuntu1) ... 276s Selecting previously unselected package gcc-s390x-linux-gnu. 276s Preparing to unpack .../19-gcc-s390x-linux-gnu_4%3a15.2.0-4ubuntu1_s390x.deb ... 276s Unpacking gcc-s390x-linux-gnu (4:15.2.0-4ubuntu1) ... 276s Selecting previously unselected package gcc. 276s Preparing to unpack .../20-gcc_4%3a15.2.0-4ubuntu1_s390x.deb ... 276s Unpacking gcc (4:15.2.0-4ubuntu1) ... 276s Selecting previously unselected package libstdc++-15-dev:s390x. 276s Preparing to unpack .../21-libstdc++-15-dev_15.2.0-5ubuntu1_s390x.deb ... 276s Unpacking libstdc++-15-dev:s390x (15.2.0-5ubuntu1) ... 276s Selecting previously unselected package g++-15-s390x-linux-gnu. 276s Preparing to unpack .../22-g++-15-s390x-linux-gnu_15.2.0-5ubuntu1_s390x.deb ... 276s Unpacking g++-15-s390x-linux-gnu (15.2.0-5ubuntu1) ... 276s Selecting previously unselected package g++-15. 276s Preparing to unpack .../23-g++-15_15.2.0-5ubuntu1_s390x.deb ... 276s Unpacking g++-15 (15.2.0-5ubuntu1) ... 276s Selecting previously unselected package g++-s390x-linux-gnu. 276s Preparing to unpack .../24-g++-s390x-linux-gnu_4%3a15.2.0-4ubuntu1_s390x.deb ... 276s Unpacking g++-s390x-linux-gnu (4:15.2.0-4ubuntu1) ... 276s Selecting previously unselected package g++. 276s Preparing to unpack .../25-g++_4%3a15.2.0-4ubuntu1_s390x.deb ... 276s Unpacking g++ (4:15.2.0-4ubuntu1) ... 276s Selecting previously unselected package build-essential. 276s Preparing to unpack .../26-build-essential_12.12ubuntu1_s390x.deb ... 276s Unpacking build-essential (12.12ubuntu1) ... 276s Selecting previously unselected package cmake-data. 276s Preparing to unpack .../27-cmake-data_3.31.6-2ubuntu6_all.deb ... 276s Unpacking cmake-data (3.31.6-2ubuntu6) ... 276s Selecting previously unselected package libjsoncpp26:s390x. 276s Preparing to unpack .../28-libjsoncpp26_1.9.6-3_s390x.deb ... 276s Unpacking libjsoncpp26:s390x (1.9.6-3) ... 276s Selecting previously unselected package librhash1:s390x. 276s Preparing to unpack .../29-librhash1_1.4.6-1_s390x.deb ... 276s Unpacking librhash1:s390x (1.4.6-1) ... 276s Selecting previously unselected package cmake. 276s Preparing to unpack .../30-cmake_3.31.6-2ubuntu6_s390x.deb ... 276s Unpacking cmake (3.31.6-2ubuntu6) ... 277s Selecting previously unselected package libdebhelper-perl. 277s Preparing to unpack .../31-libdebhelper-perl_13.24.2ubuntu1_all.deb ... 277s Unpacking libdebhelper-perl (13.24.2ubuntu1) ... 277s Selecting previously unselected package libtool. 277s Preparing to unpack .../32-libtool_2.5.4-4build1_all.deb ... 277s Unpacking libtool (2.5.4-4build1) ... 277s Selecting previously unselected package dh-autoreconf. 277s Preparing to unpack .../33-dh-autoreconf_21_all.deb ... 277s Unpacking dh-autoreconf (21) ... 277s Selecting previously unselected package libarchive-zip-perl. 277s Preparing to unpack .../34-libarchive-zip-perl_1.68-1_all.deb ... 277s Unpacking libarchive-zip-perl (1.68-1) ... 277s Selecting previously unselected package libfile-stripnondeterminism-perl. 277s Preparing to unpack .../35-libfile-stripnondeterminism-perl_1.14.2-1_all.deb ... 277s Unpacking libfile-stripnondeterminism-perl (1.14.2-1) ... 277s Selecting previously unselected package dh-strip-nondeterminism. 277s Preparing to unpack .../36-dh-strip-nondeterminism_1.14.2-1_all.deb ... 277s Unpacking dh-strip-nondeterminism (1.14.2-1) ... 277s Selecting previously unselected package debugedit. 277s Preparing to unpack .../37-debugedit_1%3a5.2-3_s390x.deb ... 277s Unpacking debugedit (1:5.2-3) ... 277s Selecting previously unselected package dwz. 277s Preparing to unpack .../38-dwz_0.16-2_s390x.deb ... 277s Unpacking dwz (0.16-2) ... 277s Selecting previously unselected package gettext. 277s Preparing to unpack .../39-gettext_0.23.1-2build2_s390x.deb ... 277s Unpacking gettext (0.23.1-2build2) ... 277s Selecting previously unselected package intltool-debian. 277s Preparing to unpack .../40-intltool-debian_0.35.0+20060710.6_all.deb ... 277s Unpacking intltool-debian (0.35.0+20060710.6) ... 277s Selecting previously unselected package po-debconf. 277s Preparing to unpack .../41-po-debconf_1.0.21+nmu1_all.deb ... 277s Unpacking po-debconf (1.0.21+nmu1) ... 277s Selecting previously unselected package debhelper. 277s Preparing to unpack .../42-debhelper_13.24.2ubuntu1_all.deb ... 277s Unpacking debhelper (13.24.2ubuntu1) ... 277s Selecting previously unselected package lambda-align2. 277s Preparing to unpack .../43-lambda-align2_2.0.1-3_s390x.deb ... 277s Unpacking lambda-align2 (2.0.1-3) ... 277s Selecting previously unselected package libbz2-dev:s390x. 277s Preparing to unpack .../44-libbz2-dev_1.0.8-6build1_s390x.deb ... 277s Unpacking libbz2-dev:s390x (1.0.8-6build1) ... 277s Selecting previously unselected package libmbedcrypto16:s390x. 277s Preparing to unpack .../45-libmbedcrypto16_3.6.2-3ubuntu1_s390x.deb ... 277s Unpacking libmbedcrypto16:s390x (3.6.2-3ubuntu1) ... 277s Selecting previously unselected package libmbedx509-7:s390x. 277s Preparing to unpack .../46-libmbedx509-7_3.6.2-3ubuntu1_s390x.deb ... 277s Unpacking libmbedx509-7:s390x (3.6.2-3ubuntu1) ... 277s Selecting previously unselected package libmbedtls21:s390x. 277s Preparing to unpack .../47-libmbedtls21_3.6.2-3ubuntu1_s390x.deb ... 277s Unpacking libmbedtls21:s390x (3.6.2-3ubuntu1) ... 277s Selecting previously unselected package libseqan2-dev. 277s Preparing to unpack .../48-libseqan2-dev_2.4.0+dfsg-16_all.deb ... 277s Unpacking libseqan2-dev (2.4.0+dfsg-16) ... 277s Selecting previously unselected package ncbi-data. 277s Preparing to unpack .../49-ncbi-data_6.1.20170106+dfsg2-6_all.deb ... 277s Unpacking ncbi-data (6.1.20170106+dfsg2-6) ... 277s Selecting previously unselected package ncbi-blast+. 277s Preparing to unpack .../50-ncbi-blast+_2.16.0+ds-7_s390x.deb ... 277s Unpacking ncbi-blast+ (2.16.0+ds-7) ... 277s Selecting previously unselected package zlib1g-dev:s390x. 277s Preparing to unpack .../51-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_s390x.deb ... 277s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 277s Setting up ncbi-data (6.1.20170106+dfsg2-6) ... 277s Setting up libarchive-zip-perl (1.68-1) ... 277s Setting up libdebhelper-perl (13.24.2ubuntu1) ... 277s Setting up m4 (1.4.19-8) ... 277s Setting up libgomp1:s390x (15.2.0-5ubuntu1) ... 277s Setting up libseqan2-dev (2.4.0+dfsg-16) ... 277s Setting up autotools-dev (20240727.1) ... 277s Setting up libjsoncpp26:s390x (1.9.6-3) ... 277s Setting up lambda-align2 (2.0.1-3) ... 277s Setting up libmpc3:s390x (1.3.1-1build3) ... 277s Setting up autopoint (0.23.1-2build2) ... 277s Setting up autoconf (2.72-3.1ubuntu1) ... 277s Setting up libubsan1:s390x (15.2.0-5ubuntu1) ... 277s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 277s Setting up dwz (0.16-2) ... 277s Setting up libasan8:s390x (15.2.0-5ubuntu1) ... 277s Setting up debugedit (1:5.2-3) ... 277s Setting up cmake-data (3.31.6-2ubuntu6) ... 277s Setting up librhash1:s390x (1.4.6-1) ... 277s Setting up libmbedcrypto16:s390x (3.6.2-3ubuntu1) ... 277s Setting up libisl23:s390x (0.27-1) ... 277s Setting up libcc1-0:s390x (15.2.0-5ubuntu1) ... 277s Setting up libitm1:s390x (15.2.0-5ubuntu1) ... 277s Setting up libbz2-dev:s390x (1.0.8-6build1) ... 277s Setting up automake (1:1.17-4ubuntu1) ... 277s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode 277s Setting up libfile-stripnondeterminism-perl (1.14.2-1) ... 277s Setting up gettext (0.23.1-2build2) ... 277s Setting up libgcc-15-dev:s390x (15.2.0-5ubuntu1) ... 277s Setting up intltool-debian (0.35.0+20060710.6) ... 277s Setting up libmbedx509-7:s390x (3.6.2-3ubuntu1) ... 277s Setting up libstdc++-15-dev:s390x (15.2.0-5ubuntu1) ... 277s Setting up libmbedtls21:s390x (3.6.2-3ubuntu1) ... 277s Setting up dh-strip-nondeterminism (1.14.2-1) ... 277s Setting up cpp-15-s390x-linux-gnu (15.2.0-5ubuntu1) ... 277s Setting up cmake (3.31.6-2ubuntu6) ... 277s Setting up gcc-15-s390x-linux-gnu (15.2.0-5ubuntu1) ... 277s Setting up g++-15-s390x-linux-gnu (15.2.0-5ubuntu1) ... 277s Setting up cpp-s390x-linux-gnu (4:15.2.0-4ubuntu1) ... 277s Setting up po-debconf (1.0.21+nmu1) ... 277s Setting up ncbi-blast+ (2.16.0+ds-7) ... 277s Setting up gcc-s390x-linux-gnu (4:15.2.0-4ubuntu1) ... 277s Setting up cpp-15 (15.2.0-5ubuntu1) ... 277s Setting up cpp (4:15.2.0-4ubuntu1) ... 277s Setting up g++-s390x-linux-gnu (4:15.2.0-4ubuntu1) ... 277s Setting up gcc-15 (15.2.0-5ubuntu1) ... 277s Setting up g++-15 (15.2.0-5ubuntu1) ... 277s Setting up libtool (2.5.4-4build1) ... 277s Setting up gcc (4:15.2.0-4ubuntu1) ... 277s Setting up dh-autoreconf (21) ... 277s Setting up g++ (4:15.2.0-4ubuntu1) ... 277s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 277s Setting up build-essential (12.12ubuntu1) ... 277s Setting up debhelper (13.24.2ubuntu1) ... 277s Processing triggers for install-info (7.1.1-1ubuntu1) ... 277s Processing triggers for libc-bin (2.42-0ubuntu3) ... 277s Processing triggers for man-db (2.13.1-1) ... 279s autopkgtest [21:06:53]: test run-tests: [----------------------- 279s + mkdir test_build 279s + ls debian/*.md5sums.gz 279s + gzip --keep debian/db_nucl_fm.md5sums 279s + gzip --keep debian/db_nucl_sa.md5sums 279s + gzip --keep debian/db_prot_fm.md5sums 279s + gzip --keep debian/db_prot_sa.md5sums 279s + gzip --keep debian/db_trans_fm.md5sums 279s + gzip --keep debian/db_trans_sa.md5sums 279s + cp --backup debian/db_nucl_fm.md5sums.gz debian/db_nucl_sa.md5sums.gz debian/db_prot_fm.md5sums.gz debian/db_prot_sa.md5sums.gz debian/db_trans_fm.md5sums.gz debian/db_trans_sa.md5sums.gz tests/ 279s + cd test_build 279s + cmake -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON ../ 279s CMake Deprecation Warning at CMakeLists.txt:5 (cmake_minimum_required): 279s Compatibility with CMake < 3.10 will be removed from a future version of 279s CMake. 279s 279s Update the VERSION argument value. Or, use the ... syntax 279s to tell CMake that the project requires at least but has been updated 279s to work with policies introduced by or earlier. 279s 279s 279s Compiler Detection 279s -- The CXX compiler identification is GNU 15.2.0 279s -- Detecting CXX compiler ABI info 279s -- Detecting CXX compiler ABI info - done 279s -- Check for working CXX compiler: /usr/bin/c++ - skipped 279s -- Detecting CXX compile features 279s -- Detecting CXX compile features - done 279s 279s Dependency detection 280s CMake Warning (dev) at /usr/share/cmake/seqan/seqan-config.cmake:218 (EXEC_PROGRAM): 280s Policy CMP0153 is not set: The exec_program command should not be called. 280s Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy 280s command to set the policy and suppress this warning. 280s 280s Use execute_process() instead. 280s Call Stack (most recent call first): 280s src/CMakeLists.txt:34 (find_package) 280s This warning is for project developers. Use -Wno-dev to suppress it. 280s 280s -- These dependencies were found: 280s -- The requirements were met. 280s -- LAMBDA version is: 2.0.1 280s -- The following options are selected for the build: 280s -- Run 'cmake -LH' to get a comment on each option. 280s -- Remove CMakeCache.txt and re-run cmake with -DOPTIONNAME=ON|OFF to change an option. 280s OPENMP TRUE -fopenmp 280s ZLIB TRUE 1.3.1 280s BZIP2 TRUE 1.0.8 280s SEQAN TRUE 2.4.0 280s 280s Build configuration 280s LAMBDA_FASTBUILD OFF 280s LAMBDA_LINGAPS_OPT OFF 280s LAMBDA_LONG_PROTEIN_SUBJ_SEQS OFF 280s LAMBDA_MMAPPED_DB OFF 280s LAMBDA_NATIVE_BUILD ON 280s LAMBDA_MULTIOPT_BUILD OFF 280s LAMBDA_STATIC_BUILD OFF 280s 280s Setting up unit tests 280s CMake Deprecation Warning at tests/CMakeLists.txt:5 (cmake_minimum_required): 280s Compatibility with CMake < 3.10 will be removed from a future version of 280s CMake. 280s 280s Update the VERSION argument value. Or, use the ... syntax 280s to tell CMake that the project requires at least but has been updated 280s to work with policies introduced by or earlier. 280s 280s 280s -- Configuring done (0.5s) 280s CMake Warning: 280s Manually-specified variables were not used by the project: 280s 280s CMAKE_EXPORT_NO_PACKAGE_REGISTRY 280s 280s 280s + dpkg -L lambda-align2 280s + grep bin/ 280s -- Generating done (0.0s) 280s -- Build files have been written to: /tmp/autopkgtest.1cZQpx/build.xfm/src/test_build 280s + ln -s /usr/bin/lambda2 bin/ 280s + mkdir -p libexec 280s + dpkg -L lambda-align2 280s + grep libexec/ 280s + cd tests 280s + set +e 280s + nproc 280s + ctest --parallel 2 -I 1,10 --output-on-failure 280s Test project /tmp/autopkgtest.1cZQpx/build.xfm/src/test_build/tests 280s Start 1: test_mkindex_blastn_sa 280s Start 2: test_mkindex_blastn_fm 281s 1/10 Test #2: test_mkindex_blastn_fm ........... Passed 0.91 sec 281s Start 3: test_mkindex_blastp_sa 281s 2/10 Test #3: test_mkindex_blastp_sa ........... Passed 0.03 sec 281s Start 4: test_mkindex_blastp_fm 281s 3/10 Test #4: test_mkindex_blastp_fm ........... Passed 0.03 sec 281s Start 5: test_mkindex_blastx_sa 281s 4/10 Test #5: test_mkindex_blastx_sa ........... Passed 0.03 sec 281s Start 6: test_mkindex_blastx_fm 281s 5/10 Test #6: test_mkindex_blastx_fm ........... Passed 0.03 sec 281s Start 7: test_mkindex_tblastn_sa 281s 6/10 Test #7: test_mkindex_tblastn_sa .......... Passed 0.15 sec 281s Start 8: test_mkindex_tblastn_fm 281s 7/10 Test #1: test_mkindex_blastn_sa ........... Passed 1.36 sec 281s Start 9: test_mkindex_tblastx_sa 281s 8/10 Test #8: test_mkindex_tblastn_fm .......... Passed 0.20 sec 281s Start 10: test_mkindex_tblastx_fm 281s 9/10 Test #9: test_mkindex_tblastx_sa .......... Passed 0.23 sec 281s 10/10 Test #10: test_mkindex_tblastx_fm .......... Passed 0.21 sec 281s 281s 100% tests passed, 0 tests failed out of 10 281s 281s Total Test time (real) = 1.60 sec 281s + RESULT=0 281s + ls tests/*~ 281s + exit 0 282s autopkgtest [21:06:56]: test run-tests: -----------------------] 282s autopkgtest [21:06:56]: test run-tests: - - - - - - - - - - results - - - - - - - - - - 282s run-tests PASS 283s autopkgtest [21:06:57]: @@@@@@@@@@@@@@@@@@@@ summary 283s run-tests PASS 593s nova [W] Timed out waiting for b95cb9cb-9064-4429-8075-54605005094e to get deleted.