0s autopkgtest [16:39:45]: starting date and time: 2025-11-17 16:39:45+0000 0s autopkgtest [16:39:45]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [16:39:45]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.taagtlvl/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:dnarrange --apt-upgrade dnarrange --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=dnarrange/1.6.3-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-14.secgroup --name adt-resolute-s390x-dnarrange-20251117-163945-juju-7f2275-prod-proposed-migration-environment-2-7c949622-5510-4928-abcd-3ea088055c43 --image adt/ubuntu-resolute-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-s390x-dnarrange-20251117-163945-juju-7f2275-prod-proposed-migration-environment-2-7c949622-5510-4928-abcd-3ea088055c43 from image adt/ubuntu-resolute-s390x-server-20251117.img (UUID a3a3e3b9-e6ba-478c-a5e9-fce6f0982a95)... 55s autopkgtest [16:40:40]: testbed dpkg architecture: s390x 56s autopkgtest [16:40:41]: testbed apt version: 3.1.11 56s autopkgtest [16:40:41]: @@@@@@@@@@@@@@@@@@@@ test bed setup 56s autopkgtest [16:40:41]: testbed release detected to be: None 57s autopkgtest [16:40:42]: updating testbed package index (apt update) 57s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 58s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 58s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 58s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 58s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [779 kB] 58s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9852 B] 58s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.9 kB] 58s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [73.2 kB] 58s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x Packages [134 kB] 58s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted s390x Packages [940 B] 58s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe s390x Packages [488 kB] 58s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse s390x Packages [10.6 kB] 59s Fetched 1606 kB in 1s (1167 kB/s) 59s Reading package lists... 60s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 60s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 60s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 60s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 61s Reading package lists... 61s Reading package lists... 61s Building dependency tree... 61s Reading state information... 61s Calculating upgrade... 61s The following packages will be upgraded: 61s apt libapt-pkg7.0 libcrypt-dev libcrypt1 usbutils 61s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 61s Need to get 2926 kB of archives. 61s After this operation, 50.2 kB of additional disk space will be used. 61s Get:1 http://ftpmaster.internal/ubuntu resolute/main s390x libcrypt-dev s390x 1:4.5.1-1 [127 kB] 62s Get:2 http://ftpmaster.internal/ubuntu resolute/main s390x libcrypt1 s390x 1:4.5.1-1 [96.1 kB] 62s Get:3 http://ftpmaster.internal/ubuntu resolute/main s390x libapt-pkg7.0 s390x 3.1.12 [1150 kB] 62s Get:4 http://ftpmaster.internal/ubuntu resolute/main s390x apt s390x 3.1.12 [1468 kB] 62s Get:5 http://ftpmaster.internal/ubuntu resolute/main s390x usbutils s390x 1:019-1 [85.6 kB] 63s dpkg-preconfigure: unable to re-open stdin: No such file or directory 63s Fetched 2926 kB in 1s (2104 kB/s) 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61309 files and directories currently installed.) 63s Preparing to unpack .../libcrypt-dev_1%3a4.5.1-1_s390x.deb ... 63s Unpacking libcrypt-dev:s390x (1:4.5.1-1) over (1:4.4.38-1build1) ... 63s Preparing to unpack .../libcrypt1_1%3a4.5.1-1_s390x.deb ... 63s Unpacking libcrypt1:s390x (1:4.5.1-1) over (1:4.4.38-1build1) ... 63s Setting up libcrypt1:s390x (1:4.5.1-1) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61309 files and directories currently installed.) 63s Preparing to unpack .../libapt-pkg7.0_3.1.12_s390x.deb ... 63s Unpacking libapt-pkg7.0:s390x (3.1.12) over (3.1.11) ... 63s Preparing to unpack .../archives/apt_3.1.12_s390x.deb ... 63s Unpacking apt (3.1.12) over (3.1.11) ... 63s Preparing to unpack .../usbutils_1%3a019-1_s390x.deb ... 63s Unpacking usbutils (1:019-1) over (1:018-2) ... 63s Setting up usbutils (1:019-1) ... 63s Setting up libcrypt-dev:s390x (1:4.5.1-1) ... 63s Setting up libapt-pkg7.0:s390x (3.1.12) ... 63s Setting up apt (3.1.12) ... 64s Processing triggers for man-db (2.13.1-1) ... 65s Processing triggers for libc-bin (2.42-2ubuntu2) ... 65s autopkgtest [16:40:50]: upgrading testbed (apt dist-upgrade and autopurge) 66s Reading package lists... 66s Building dependency tree... 66s Reading state information... 66s Calculating upgrade... 66s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 67s Reading package lists... 67s Building dependency tree... 67s Reading state information... 67s Solving dependencies... 67s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 67s autopkgtest [16:40:52]: rebooting testbed after setup commands that affected boot 83s autopkgtest [16:41:08]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP Mon Sep 22 08:56:47 UTC 2025 85s autopkgtest [16:41:10]: @@@@@@@@@@@@@@@@@@@@ apt-source dnarrange 88s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/universe dnarrange 1.6.3-1 (dsc) [1699 B] 88s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/universe dnarrange 1.6.3-1 (tar) [1734 kB] 88s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/universe dnarrange 1.6.3-1 (tar) [30.8 kB] 88s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/universe dnarrange 1.6.3-1 (diff) [2740 B] 88s gpgv: Signature made Sat Nov 1 16:35:01 2025 UTC 88s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 88s gpgv: issuer "nilesh@debian.org" 88s gpgv: Can't check signature: No public key 88s dpkg-source: warning: cannot verify inline signature for ./dnarrange_1.6.3-1.dsc: no acceptable signature found 88s autopkgtest [16:41:13]: testing package dnarrange version 1.6.3-1 88s autopkgtest [16:41:13]: build not needed 90s autopkgtest [16:41:15]: test run-unit-test: preparing testbed 90s Reading package lists... 90s Building dependency tree... 90s Reading state information... 90s Solving dependencies... 90s The following NEW packages will be installed: 90s dnarrange python3-all 90s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 90s Need to get 20.8 kB of archives. 90s After this operation, 96.3 kB of additional disk space will be used. 90s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/universe s390x dnarrange all 1.6.3-1 [19.9 kB] 91s Get:2 http://ftpmaster.internal/ubuntu resolute/main s390x python3-all s390x 3.13.7-1 [886 B] 91s Fetched 20.8 kB in 0s (75.9 kB/s) 91s Selecting previously unselected package dnarrange. 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61309 files and directories currently installed.) 91s Preparing to unpack .../dnarrange_1.6.3-1_all.deb ... 91s Unpacking dnarrange (1.6.3-1) ... 91s Selecting previously unselected package python3-all. 91s Preparing to unpack .../python3-all_3.13.7-1_s390x.deb ... 91s Unpacking python3-all (3.13.7-1) ... 91s Setting up python3-all (3.13.7-1) ... 91s Setting up dnarrange (1.6.3-1) ... 92s autopkgtest [16:41:17]: test run-unit-test: [----------------------- 92s # dnarrange 92s 92s number of groups: 0 93s --- tests.out 2022-05-29 08:18:16.000000000 +0000 93s +++ - 2025-11-17 16:41:18.886160128 +0000 93s @@ -22,8 +22,10 @@ 93s -m PROB, --max-mismap=PROB 93s discard any alignment with mismap probability > PROB 93s (default=1.0) 93s + --insert=NAME find insertions of the sequence with this name 93s --shrink shrink the output 93s -v, --verbose show progress messages 93s + -w W, --width=W line-wrap width of group summary lines (default=79) 93s 93s TEST dnarrange alns.maf 93s # dnarrange alns.maf 94s autopkgtest [16:41:19]: test run-unit-test: -----------------------] 94s run-unit-test FAIL non-zero exit status 1 94s autopkgtest [16:41:19]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 95s autopkgtest [16:41:20]: @@@@@@@@@@@@@@@@@@@@ summary 95s run-unit-test FAIL non-zero exit status 1