0s autopkgtest [08:21:12]: starting date and time: 2026-02-09 08:21:12+0000 0s autopkgtest [08:21:12]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [08:21:12]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.f6hpuyay/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:matplotlib --apt-upgrade custodian --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=matplotlib/3.10.7+dfsg1-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-s390x-37.secgroup --name adt-resolute-s390x-custodian-20260209-082111-juju-7f2275-prod-proposed-migration-environment-20-2326fbc3-792b-4e75-85c4-adefc551d1b5 --image adt/ubuntu-resolute-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-s390x -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-s390x-custodian-20260209-082111-juju-7f2275-prod-proposed-migration-environment-20-2326fbc3-792b-4e75-85c4-adefc551d1b5 from image adt/ubuntu-resolute-s390x-server-20260209.img (UUID 9cc437fa-9eb6-47c5-b3be-2034f91c6244)... 114s autopkgtest [08:23:06]: testbed dpkg architecture: s390x 114s autopkgtest [08:23:06]: testbed apt version: 3.1.15 115s autopkgtest [08:23:07]: @@@@@@@@@@@@@@@@@@@@ test bed setup 116s autopkgtest [08:23:08]: testbed release detected to be: None 118s autopkgtest [08:23:10]: updating testbed package index (apt update) 119s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 119s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 119s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 119s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 119s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [165 kB] 119s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 120s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1605 kB] 120s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x Packages [243 kB] 120s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe s390x Packages [1452 kB] 120s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse s390x Packages [7636 B] 123s Fetched 3626 kB in 4s (982 kB/s) 129s Reading package lists... 131s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 131s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 132s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 132s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 139s Reading package lists... 140s Reading package lists... 141s Building dependency tree... 141s Reading state information... 143s Calculating upgrade... 144s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 144s autopkgtest [08:23:36]: upgrading testbed (apt dist-upgrade and autopurge) 144s Reading package lists... 146s Building dependency tree... 146s Reading state information... 147s Calculating upgrade... 147s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 148s Reading package lists... 150s Building dependency tree... 150s Reading state information... 150s Solving dependencies... 151s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 158s autopkgtest [08:23:50]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP Fri Jan 23 19:02:49 UTC 2026 159s autopkgtest [08:23:51]: @@@@@@@@@@@@@@@@@@@@ apt-source custodian 167s Get:1 http://ftpmaster.internal/ubuntu resolute/universe custodian 2024.10.16-1 (dsc) [2442 B] 167s Get:2 http://ftpmaster.internal/ubuntu resolute/universe custodian 2024.10.16-1 (tar) [51.2 MB] 167s Get:3 http://ftpmaster.internal/ubuntu resolute/universe custodian 2024.10.16-1 (diff) [8360 B] 170s gpgv: Signature made Sat Feb 15 20:44:02 2025 UTC 170s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 170s gpgv: Can't check signature: No public key 170s dpkg-source: warning: cannot verify inline signature for ./custodian_2024.10.16-1.dsc: no acceptable signature found 179s autopkgtest [08:24:11]: testing package custodian version 2024.10.16-1 179s autopkgtest [08:24:11]: build not needed 206s autopkgtest [08:24:38]: test test-custodian: preparing testbed 207s Reading package lists... 208s Building dependency tree... 208s Reading state information... 209s Solving dependencies... 210s The following NEW packages will be installed: 210s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libblas3 210s libdeflate0 libfontconfig1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 210s libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 210s liblcms2-2 libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0 libsymspg2 210s libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libxft2 210s libxrender1 libxslt1.1 libxss1 libzopfli1 python-matplotlib-data python3-all 210s python3-annotated-types python3-brotli python3-bson python3-contourpy 210s python3-custodian python3-cycler python3-decorator python3-dnspython 210s python3-email-validator python3-fastjsonschema python3-fonttools 210s python3-iniconfig python3-joblib python3-jupyter-core python3-kiwisolver 210s python3-latexcodec python3-lxml python3-lz4 python3-matplotlib python3-monty 210s python3-mpmath python3-nbformat python3-networkx python3-numpy 210s python3-numpy-dev python3-palettable python3-pandas python3-pandas-lib 210s python3-pil python3-pil.imagetk python3-platformdirs python3-plotly 210s python3-pluggy python3-psutil python3-pybtex python3-pydantic 210s python3-pydantic-core python3-pymatgen python3-pytest python3-pytz 210s python3-ruamel.yaml python3-ruamel.yaml.clib python3-scipy 210s python3-sentry-sdk python3-spglib python3-sympy python3-tabulate 210s python3-tenacity python3-tk python3-tqdm python3-traitlets 210s python3-typing-inspection python3-ufolib2 python3-uncertainties 210s python3-zopfli python3.13-tk python3.14 python3.14-minimal python3.14-tk 210s unicode-data x11-common 210s 0 upgraded, 97 newly installed, 0 to remove and 0 not upgraded. 210s Need to get 112 MB of archives. 210s After this operation, 593 MB of additional disk space will be used. 210s Get:1 http://ftpmaster.internal/ubuntu resolute/main s390x python3-numpy-dev s390x 1:2.3.5+ds-3 [146 kB] 210s Get:2 http://ftpmaster.internal/ubuntu resolute/main s390x libblas3 s390x 3.12.1-7ubuntu1 [255 kB] 210s Get:3 http://ftpmaster.internal/ubuntu resolute/main s390x libgfortran5 s390x 15.2.0-12ubuntu1 [629 kB] 210s Get:4 http://ftpmaster.internal/ubuntu resolute/main s390x liblapack3 s390x 3.12.1-7ubuntu1 [2983 kB] 211s Get:5 http://ftpmaster.internal/ubuntu resolute/main s390x python3-numpy s390x 1:2.3.5+ds-3 [5305 kB] 211s Get:6 http://ftpmaster.internal/ubuntu resolute/main s390x python3.14-minimal s390x 3.14.2-1 [2510 kB] 211s Get:7 http://ftpmaster.internal/ubuntu resolute/main s390x fonts-dejavu-mono all 2.37-8build1 [502 kB] 211s Get:8 http://ftpmaster.internal/ubuntu resolute/main s390x fonts-dejavu-core all 2.37-8build1 [834 kB] 211s Get:9 http://ftpmaster.internal/ubuntu resolute/main s390x fontconfig-config s390x 2.17.1-3ubuntu1 [38.5 kB] 211s Get:10 http://ftpmaster.internal/ubuntu resolute/universe s390x fonts-lyx all 2.5.0~RC2-3 [171 kB] 211s Get:11 http://ftpmaster.internal/ubuntu resolute/main s390x libdeflate0 s390x 1.23-2build1 [45.9 kB] 211s Get:12 http://ftpmaster.internal/ubuntu resolute/main s390x libfreetype6 s390x 2.14.1+dfsg-2 [443 kB] 211s Get:13 http://ftpmaster.internal/ubuntu resolute/main s390x libfontconfig1 s390x 2.17.1-3ubuntu1 [152 kB] 211s Get:14 http://ftpmaster.internal/ubuntu resolute/main s390x libgomp1 s390x 15.2.0-12ubuntu1 [154 kB] 211s Get:15 http://ftpmaster.internal/ubuntu resolute/main s390x libgraphite2-3 s390x 1.3.14-11ubuntu1 [80.5 kB] 211s Get:16 http://ftpmaster.internal/ubuntu resolute/main s390x libharfbuzz0b s390x 12.3.2-1 [562 kB] 211s Get:17 http://ftpmaster.internal/ubuntu resolute/main s390x libimagequant0 s390x 2.18.0-1build1 [43.3 kB] 211s Get:18 http://ftpmaster.internal/ubuntu resolute/main s390x libjpeg-turbo8 s390x 2.1.5-4ubuntu3 [156 kB] 211s Get:19 http://ftpmaster.internal/ubuntu resolute/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 211s Get:20 http://ftpmaster.internal/ubuntu resolute/main s390x liblcms2-2 s390x 2.17-1 [176 kB] 211s Get:21 http://ftpmaster.internal/ubuntu resolute/universe s390x libqhull-r8.0 s390x 2020.2-8 [199 kB] 211s Get:22 http://ftpmaster.internal/ubuntu resolute/main s390x libraqm0 s390x 0.10.4-1 [15.7 kB] 211s Get:23 http://ftpmaster.internal/ubuntu resolute/main s390x libsharpyuv0 s390x 1.5.0-0.1build1 [16.6 kB] 211s Get:24 http://ftpmaster.internal/ubuntu resolute/universe s390x libsymspg2 s390x 2.7.0-1 [215 kB] 211s Get:25 http://ftpmaster.internal/ubuntu resolute/main s390x libtcl8.6 s390x 8.6.17+dfsg-1build1 [1033 kB] 211s Get:26 http://ftpmaster.internal/ubuntu resolute/main s390x libjbig0 s390x 2.1-6.1ubuntu3 [32.8 kB] 211s Get:27 http://ftpmaster.internal/ubuntu resolute/main s390x libwebp7 s390x 1.5.0-0.1build1 [227 kB] 211s Get:28 http://ftpmaster.internal/ubuntu resolute/main s390x libtiff6 s390x 4.7.0-3ubuntu3 [222 kB] 211s Get:29 http://ftpmaster.internal/ubuntu resolute/main s390x libxrender1 s390x 1:0.9.12-1 [20.9 kB] 211s Get:30 http://ftpmaster.internal/ubuntu resolute/main s390x libxft2 s390x 2.3.6-1build2 [48.0 kB] 211s Get:31 http://ftpmaster.internal/ubuntu resolute/main s390x x11-common all 1:7.7+24ubuntu1 [22.4 kB] 211s Get:32 http://ftpmaster.internal/ubuntu resolute/main s390x libxss1 s390x 1:1.2.3-1build4 [7138 B] 211s Get:33 http://ftpmaster.internal/ubuntu resolute/main s390x libtk8.6 s390x 8.6.17-1 [828 kB] 212s Get:34 http://ftpmaster.internal/ubuntu resolute/main s390x libwebpdemux2 s390x 1.5.0-0.1build1 [12.5 kB] 212s Get:35 http://ftpmaster.internal/ubuntu resolute/main s390x libwebpmux3 s390x 1.5.0-0.1build1 [25.7 kB] 212s Get:36 http://ftpmaster.internal/ubuntu resolute/main s390x libxslt1.1 s390x 1.1.43-0.3 [163 kB] 212s Get:37 http://ftpmaster.internal/ubuntu resolute/universe s390x libzopfli1 s390x 1.0.3-3build1 [124 kB] 212s Get:38 http://ftpmaster.internal/ubuntu resolute-proposed/universe s390x python-matplotlib-data all 3.10.7+dfsg1-2 [2930 kB] 212s Get:39 http://ftpmaster.internal/ubuntu resolute/main s390x python3.14 s390x 3.14.2-1 [816 kB] 212s Get:40 http://ftpmaster.internal/ubuntu resolute/main s390x python3-all s390x 3.13.9-3 [890 B] 212s Get:41 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-annotated-types all 0.7.0-1 [19.4 kB] 212s Get:42 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-brotli s390x 1.1.0-2build6 [386 kB] 212s Get:43 http://ftpmaster.internal/ubuntu resolute/main s390x python3-bson all 4.16.0-1 [44.8 kB] 212s Get:44 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-contourpy s390x 1.3.3-1 [266 kB] 212s Get:45 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pytz all 2025.2-5 [32.4 kB] 212s Get:46 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pandas-lib s390x 2.3.3+dfsg-3 [7599 kB] 212s Get:47 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pandas all 2.3.3+dfsg-3 [2948 kB] 212s Get:48 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pydantic-core s390x 2.41.5-2 [2593 kB] 212s Get:49 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-typing-inspection all 0.4.2-1 [13.1 kB] 212s Get:50 http://ftpmaster.internal/ubuntu resolute/main s390x python3-dnspython all 2.7.0-1ubuntu2 [167 kB] 212s Get:51 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-email-validator all 2.2.0-1 [28.5 kB] 212s Get:52 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pydantic s390x 2.12.5-2 [312 kB] 212s Get:53 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-tqdm all 4.67.1-7 [93.3 kB] 212s Get:54 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-ruamel.yaml.clib s390x 0.2.15+ds-1 [214 kB] 212s Get:55 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-ruamel.yaml all 0.18.10+ds-1 [127 kB] 212s Get:56 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-monty all 2025.3.3-1 [40.4 kB] 212s Get:57 http://ftpmaster.internal/ubuntu resolute/main s390x python3-psutil s390x 7.1.0-1ubuntu1 [191 kB] 212s Get:58 http://ftpmaster.internal/ubuntu resolute/main s390x libopenjp2-7 s390x 2.5.4-1 [208 kB] 212s Get:59 http://ftpmaster.internal/ubuntu resolute/main s390x python3-pil s390x 12.0.0-1ubuntu1 [540 kB] 213s Get:60 http://ftpmaster.internal/ubuntu resolute/main s390x python3.13-tk s390x 3.13.11-1 [109 kB] 213s Get:61 http://ftpmaster.internal/ubuntu resolute/main s390x python3.14-tk s390x 3.14.2-1 [110 kB] 213s Get:62 http://ftpmaster.internal/ubuntu resolute/main s390x python3-tk s390x 3.13.9-3 [11.2 kB] 213s Get:63 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pil.imagetk s390x 12.0.0-1ubuntu1 [9884 B] 213s Get:64 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-cycler all 0.12.1-2 [9850 B] 213s Get:65 http://ftpmaster.internal/ubuntu resolute/main s390x python3-lxml s390x 6.0.2-1 [2478 kB] 213s Get:66 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-lz4 s390x 4.4.5+dfsg-1 [27.5 kB] 213s Get:67 http://ftpmaster.internal/ubuntu resolute/main s390x python3-decorator all 5.2.1-2 [28.1 kB] 213s Get:68 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-scipy s390x 1.16.3-4 [19.7 MB] 213s Get:69 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-mpmath all 1.3.0-2 [423 kB] 213s Get:70 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-sympy all 1.14.0-2 [4306 kB] 214s Get:71 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-ufolib2 all 0.18.1+dfsg1-1 [33.7 kB] 214s Get:72 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-zopfli s390x 0.4.0-1 [11.2 kB] 214s Get:73 http://ftpmaster.internal/ubuntu resolute/universe s390x unicode-data all 16.0.0-1build1 [9543 kB] 214s Get:74 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-fonttools s390x 4.61.1-3 [1788 kB] 214s Get:75 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-kiwisolver s390x 1.4.10~rc0-1 [65.0 kB] 214s Get:76 http://ftpmaster.internal/ubuntu resolute-proposed/universe s390x python3-matplotlib s390x 3.10.7+dfsg1-2 [17.3 MB] 214s Get:77 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-sentry-sdk all 2.22.0-1 [199 kB] 214s Get:78 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-custodian all 2024.10.16-1 [90.9 kB] 215s Get:79 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-fastjsonschema all 2.21.1-1 [20.4 kB] 215s Get:80 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-iniconfig all 2.1.0-2 [6962 B] 215s Get:81 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-joblib all 1.5.2-1 [210 kB] 215s Get:82 http://ftpmaster.internal/ubuntu resolute/main s390x python3-platformdirs all 4.5.1-1 [17.1 kB] 215s Get:83 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-traitlets all 5.14.3+really5.14.3-2 [71.7 kB] 215s Get:84 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-jupyter-core all 5.9.1-1 [28.9 kB] 215s Get:85 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-latexcodec all 3.0.0-1 [16.6 kB] 215s Get:86 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-nbformat all 5.10.4-1 [39.2 kB] 215s Get:87 http://ftpmaster.internal/ubuntu resolute/main s390x python3-networkx all 3.2.1-4ubuntu2 [11.8 MB] 215s Get:88 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-palettable all 3.3.3-3 [72.6 kB] 215s Get:89 http://ftpmaster.internal/ubuntu resolute/main s390x python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB] 215s Get:90 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-plotly all 5.20.0+dfsg-1.1 [2766 kB] 215s Get:91 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pluggy all 1.6.0-2 [21.1 kB] 215s Get:92 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pybtex all 0.25.1-1 [70.0 kB] 215s Get:93 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-spglib s390x 2.7.0-1 [181 kB] 215s Get:94 http://ftpmaster.internal/ubuntu resolute/main s390x python3-tabulate all 0.9.0-1build1 [45.4 kB] 215s Get:95 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-uncertainties all 3.2.3-4 [51.8 kB] 215s Get:96 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pymatgen s390x 2025.2.18+dfsg1-5 [2616 kB] 215s Get:97 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pytest all 9.0.2-2 [277 kB] 219s Fetched 112 MB in 5s (21.5 MB/s) 220s Selecting previously unselected package python3-numpy-dev:s390x. 223s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88641 files and directories currently installed.) 223s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.5+ds-3_s390x.deb ... 223s Unpacking python3-numpy-dev:s390x (1:2.3.5+ds-3) ... 224s Selecting previously unselected package libblas3:s390x. 224s Preparing to unpack .../01-libblas3_3.12.1-7ubuntu1_s390x.deb ... 224s Unpacking libblas3:s390x (3.12.1-7ubuntu1) ... 224s Selecting previously unselected package libgfortran5:s390x. 224s Preparing to unpack .../02-libgfortran5_15.2.0-12ubuntu1_s390x.deb ... 224s Unpacking libgfortran5:s390x (15.2.0-12ubuntu1) ... 224s Selecting previously unselected package liblapack3:s390x. 224s Preparing to unpack .../03-liblapack3_3.12.1-7ubuntu1_s390x.deb ... 225s Unpacking liblapack3:s390x (3.12.1-7ubuntu1) ... 226s Selecting previously unselected package python3-numpy. 226s Preparing to unpack .../04-python3-numpy_1%3a2.3.5+ds-3_s390x.deb ... 226s Unpacking python3-numpy (1:2.3.5+ds-3) ... 229s Selecting previously unselected package python3.14-minimal. 229s Preparing to unpack .../05-python3.14-minimal_3.14.2-1_s390x.deb ... 230s Unpacking python3.14-minimal (3.14.2-1) ... 230s Selecting previously unselected package fonts-dejavu-mono. 230s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8build1_all.deb ... 230s Unpacking fonts-dejavu-mono (2.37-8build1) ... 230s Selecting previously unselected package fonts-dejavu-core. 230s Preparing to unpack .../07-fonts-dejavu-core_2.37-8build1_all.deb ... 230s Unpacking fonts-dejavu-core (2.37-8build1) ... 231s Selecting previously unselected package fontconfig-config. 231s Preparing to unpack .../08-fontconfig-config_2.17.1-3ubuntu1_s390x.deb ... 233s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 233s Selecting previously unselected package fonts-lyx. 233s Preparing to unpack .../09-fonts-lyx_2.5.0~RC2-3_all.deb ... 233s Unpacking fonts-lyx (2.5.0~RC2-3) ... 233s Selecting previously unselected package libdeflate0:s390x. 233s Preparing to unpack .../10-libdeflate0_1.23-2build1_s390x.deb ... 233s Unpacking libdeflate0:s390x (1.23-2build1) ... 234s Selecting previously unselected package libfreetype6:s390x. 234s Preparing to unpack .../11-libfreetype6_2.14.1+dfsg-2_s390x.deb ... 234s Unpacking libfreetype6:s390x (2.14.1+dfsg-2) ... 234s Selecting previously unselected package libfontconfig1:s390x. 234s Preparing to unpack .../12-libfontconfig1_2.17.1-3ubuntu1_s390x.deb ... 234s Unpacking libfontconfig1:s390x (2.17.1-3ubuntu1) ... 234s Selecting previously unselected package libgomp1:s390x. 234s Preparing to unpack .../13-libgomp1_15.2.0-12ubuntu1_s390x.deb ... 234s Unpacking libgomp1:s390x (15.2.0-12ubuntu1) ... 234s Selecting previously unselected package libgraphite2-3:s390x. 234s Preparing to unpack .../14-libgraphite2-3_1.3.14-11ubuntu1_s390x.deb ... 234s Unpacking libgraphite2-3:s390x (1.3.14-11ubuntu1) ... 234s Selecting previously unselected package libharfbuzz0b:s390x. 234s Preparing to unpack .../15-libharfbuzz0b_12.3.2-1_s390x.deb ... 234s Unpacking libharfbuzz0b:s390x (12.3.2-1) ... 235s Selecting previously unselected package libimagequant0:s390x. 235s Preparing to unpack .../16-libimagequant0_2.18.0-1build1_s390x.deb ... 235s Unpacking libimagequant0:s390x (2.18.0-1build1) ... 235s Selecting previously unselected package libjpeg-turbo8:s390x. 235s Preparing to unpack .../17-libjpeg-turbo8_2.1.5-4ubuntu3_s390x.deb ... 235s Unpacking libjpeg-turbo8:s390x (2.1.5-4ubuntu3) ... 235s Selecting previously unselected package libjpeg8:s390x. 235s Preparing to unpack .../18-libjpeg8_8c-2ubuntu11_s390x.deb ... 235s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 235s Selecting previously unselected package liblcms2-2:s390x. 235s Preparing to unpack .../19-liblcms2-2_2.17-1_s390x.deb ... 235s Unpacking liblcms2-2:s390x (2.17-1) ... 235s Selecting previously unselected package libqhull-r8.0:s390x. 235s Preparing to unpack .../20-libqhull-r8.0_2020.2-8_s390x.deb ... 235s Unpacking libqhull-r8.0:s390x (2020.2-8) ... 236s Selecting previously unselected package libraqm0:s390x. 236s Preparing to unpack .../21-libraqm0_0.10.4-1_s390x.deb ... 236s Unpacking libraqm0:s390x (0.10.4-1) ... 236s Selecting previously unselected package libsharpyuv0:s390x. 236s Preparing to unpack .../22-libsharpyuv0_1.5.0-0.1build1_s390x.deb ... 236s Unpacking libsharpyuv0:s390x (1.5.0-0.1build1) ... 236s Selecting previously unselected package libsymspg2:s390x. 236s Preparing to unpack .../23-libsymspg2_2.7.0-1_s390x.deb ... 236s Unpacking libsymspg2:s390x (2.7.0-1) ... 236s Selecting previously unselected package libtcl8.6:s390x. 236s Preparing to unpack .../24-libtcl8.6_8.6.17+dfsg-1build1_s390x.deb ... 236s Unpacking libtcl8.6:s390x (8.6.17+dfsg-1build1) ... 237s Selecting previously unselected package libjbig0:s390x. 237s Preparing to unpack .../25-libjbig0_2.1-6.1ubuntu3_s390x.deb ... 237s Unpacking libjbig0:s390x (2.1-6.1ubuntu3) ... 237s Selecting previously unselected package libwebp7:s390x. 237s Preparing to unpack .../26-libwebp7_1.5.0-0.1build1_s390x.deb ... 237s Unpacking libwebp7:s390x (1.5.0-0.1build1) ... 237s Selecting previously unselected package libtiff6:s390x. 237s Preparing to unpack .../27-libtiff6_4.7.0-3ubuntu3_s390x.deb ... 237s Unpacking libtiff6:s390x (4.7.0-3ubuntu3) ... 237s Selecting previously unselected package libxrender1:s390x. 237s Preparing to unpack .../28-libxrender1_1%3a0.9.12-1_s390x.deb ... 237s Unpacking libxrender1:s390x (1:0.9.12-1) ... 237s Selecting previously unselected package libxft2:s390x. 237s Preparing to unpack .../29-libxft2_2.3.6-1build2_s390x.deb ... 237s Unpacking libxft2:s390x (2.3.6-1build2) ... 238s Selecting previously unselected package x11-common. 238s Preparing to unpack .../30-x11-common_1%3a7.7+24ubuntu1_all.deb ... 238s Unpacking x11-common (1:7.7+24ubuntu1) ... 238s Selecting previously unselected package libxss1:s390x. 238s Preparing to unpack .../31-libxss1_1%3a1.2.3-1build4_s390x.deb ... 238s Unpacking libxss1:s390x (1:1.2.3-1build4) ... 238s Selecting previously unselected package libtk8.6:s390x. 238s Preparing to unpack .../32-libtk8.6_8.6.17-1_s390x.deb ... 238s Unpacking libtk8.6:s390x (8.6.17-1) ... 238s Selecting previously unselected package libwebpdemux2:s390x. 238s Preparing to unpack .../33-libwebpdemux2_1.5.0-0.1build1_s390x.deb ... 238s Unpacking libwebpdemux2:s390x (1.5.0-0.1build1) ... 238s Selecting previously unselected package libwebpmux3:s390x. 238s Preparing to unpack .../34-libwebpmux3_1.5.0-0.1build1_s390x.deb ... 238s Unpacking libwebpmux3:s390x (1.5.0-0.1build1) ... 239s Selecting previously unselected package libxslt1.1:s390x. 239s Preparing to unpack .../35-libxslt1.1_1.1.43-0.3_s390x.deb ... 239s Unpacking libxslt1.1:s390x (1.1.43-0.3) ... 239s Selecting previously unselected package libzopfli1. 239s Preparing to unpack .../36-libzopfli1_1.0.3-3build1_s390x.deb ... 239s Unpacking libzopfli1 (1.0.3-3build1) ... 239s Selecting previously unselected package python-matplotlib-data. 239s Preparing to unpack .../37-python-matplotlib-data_3.10.7+dfsg1-2_all.deb ... 239s Unpacking python-matplotlib-data (3.10.7+dfsg1-2) ... 239s Selecting previously unselected package python3.14. 239s Preparing to unpack .../38-python3.14_3.14.2-1_s390x.deb ... 239s Unpacking python3.14 (3.14.2-1) ... 240s Selecting previously unselected package python3-all. 240s Preparing to unpack .../39-python3-all_3.13.9-3_s390x.deb ... 240s Unpacking python3-all (3.13.9-3) ... 240s Selecting previously unselected package python3-annotated-types. 240s Preparing to unpack .../40-python3-annotated-types_0.7.0-1_all.deb ... 240s Unpacking python3-annotated-types (0.7.0-1) ... 240s Selecting previously unselected package python3-brotli. 240s Preparing to unpack .../41-python3-brotli_1.1.0-2build6_s390x.deb ... 240s Unpacking python3-brotli (1.1.0-2build6) ... 240s Selecting previously unselected package python3-bson. 241s Preparing to unpack .../42-python3-bson_4.16.0-1_all.deb ... 241s Unpacking python3-bson (4.16.0-1) ... 241s Selecting previously unselected package python3-contourpy. 241s Preparing to unpack .../43-python3-contourpy_1.3.3-1_s390x.deb ... 241s Unpacking python3-contourpy (1.3.3-1) ... 241s Selecting previously unselected package python3-pytz. 241s Preparing to unpack .../44-python3-pytz_2025.2-5_all.deb ... 241s Unpacking python3-pytz (2025.2-5) ... 241s Selecting previously unselected package python3-pandas-lib:s390x. 241s Preparing to unpack .../45-python3-pandas-lib_2.3.3+dfsg-3_s390x.deb ... 241s Unpacking python3-pandas-lib:s390x (2.3.3+dfsg-3) ... 244s Selecting previously unselected package python3-pandas. 244s Preparing to unpack .../46-python3-pandas_2.3.3+dfsg-3_all.deb ... 244s Unpacking python3-pandas (2.3.3+dfsg-3) ... 246s Selecting previously unselected package python3-pydantic-core. 246s Preparing to unpack .../47-python3-pydantic-core_2.41.5-2_s390x.deb ... 246s Unpacking python3-pydantic-core (2.41.5-2) ... 247s Selecting previously unselected package python3-typing-inspection. 247s Preparing to unpack .../48-python3-typing-inspection_0.4.2-1_all.deb ... 247s Unpacking python3-typing-inspection (0.4.2-1) ... 247s Selecting previously unselected package python3-dnspython. 247s Preparing to unpack .../49-python3-dnspython_2.7.0-1ubuntu2_all.deb ... 247s Unpacking python3-dnspython (2.7.0-1ubuntu2) ... 247s Selecting previously unselected package python3-email-validator. 247s Preparing to unpack .../50-python3-email-validator_2.2.0-1_all.deb ... 248s Unpacking python3-email-validator (2.2.0-1) ... 248s Selecting previously unselected package python3-pydantic. 248s Preparing to unpack .../51-python3-pydantic_2.12.5-2_s390x.deb ... 248s Unpacking python3-pydantic (2.12.5-2) ... 248s Selecting previously unselected package python3-tqdm. 248s Preparing to unpack .../52-python3-tqdm_4.67.1-7_all.deb ... 248s Unpacking python3-tqdm (4.67.1-7) ... 248s Selecting previously unselected package python3-ruamel.yaml.clib. 248s Preparing to unpack .../53-python3-ruamel.yaml.clib_0.2.15+ds-1_s390x.deb ... 248s Unpacking python3-ruamel.yaml.clib (0.2.15+ds-1) ... 249s Selecting previously unselected package python3-ruamel.yaml. 249s Preparing to unpack .../54-python3-ruamel.yaml_0.18.10+ds-1_all.deb ... 249s Unpacking python3-ruamel.yaml (0.18.10+ds-1) ... 249s Selecting previously unselected package python3-monty. 250s Preparing to unpack .../55-python3-monty_2025.3.3-1_all.deb ... 250s Unpacking python3-monty (2025.3.3-1) ... 250s Selecting previously unselected package python3-psutil. 250s Preparing to unpack .../56-python3-psutil_7.1.0-1ubuntu1_s390x.deb ... 250s Unpacking python3-psutil (7.1.0-1ubuntu1) ... 250s Selecting previously unselected package libopenjp2-7:s390x. 250s Preparing to unpack .../57-libopenjp2-7_2.5.4-1_s390x.deb ... 250s Unpacking libopenjp2-7:s390x (2.5.4-1) ... 250s Selecting previously unselected package python3-pil:s390x. 250s Preparing to unpack .../58-python3-pil_12.0.0-1ubuntu1_s390x.deb ... 250s Unpacking python3-pil:s390x (12.0.0-1ubuntu1) ... 250s Selecting previously unselected package python3.13-tk. 250s Preparing to unpack .../59-python3.13-tk_3.13.11-1_s390x.deb ... 250s Unpacking python3.13-tk (3.13.11-1) ... 250s Selecting previously unselected package python3.14-tk. 250s Preparing to unpack .../60-python3.14-tk_3.14.2-1_s390x.deb ... 250s Unpacking python3.14-tk (3.14.2-1) ... 250s Selecting previously unselected package python3-tk. 250s Preparing to unpack .../61-python3-tk_3.13.9-3_s390x.deb ... 250s Unpacking python3-tk (3.13.9-3) ... 251s Selecting previously unselected package python3-pil.imagetk:s390x. 251s Preparing to unpack .../62-python3-pil.imagetk_12.0.0-1ubuntu1_s390x.deb ... 251s Unpacking python3-pil.imagetk:s390x (12.0.0-1ubuntu1) ... 251s Selecting previously unselected package python3-cycler. 251s Preparing to unpack .../63-python3-cycler_0.12.1-2_all.deb ... 251s Unpacking python3-cycler (0.12.1-2) ... 251s Selecting previously unselected package python3-lxml:s390x. 251s Preparing to unpack .../64-python3-lxml_6.0.2-1_s390x.deb ... 251s Unpacking python3-lxml:s390x (6.0.2-1) ... 252s Selecting previously unselected package python3-lz4. 252s Preparing to unpack .../65-python3-lz4_4.4.5+dfsg-1_s390x.deb ... 252s Unpacking python3-lz4 (4.4.5+dfsg-1) ... 252s Selecting previously unselected package python3-decorator. 252s Preparing to unpack .../66-python3-decorator_5.2.1-2_all.deb ... 252s Unpacking python3-decorator (5.2.1-2) ... 252s Selecting previously unselected package python3-scipy. 252s Preparing to unpack .../67-python3-scipy_1.16.3-4_s390x.deb ... 252s Unpacking python3-scipy (1.16.3-4) ... 259s Selecting previously unselected package python3-mpmath. 259s Preparing to unpack .../68-python3-mpmath_1.3.0-2_all.deb ... 259s Unpacking python3-mpmath (1.3.0-2) ... 259s Selecting previously unselected package python3-sympy. 259s Preparing to unpack .../69-python3-sympy_1.14.0-2_all.deb ... 259s Unpacking python3-sympy (1.14.0-2) ... 262s Selecting previously unselected package python3-ufolib2. 262s Preparing to unpack .../70-python3-ufolib2_0.18.1+dfsg1-1_all.deb ... 262s Unpacking python3-ufolib2 (0.18.1+dfsg1-1) ... 262s Selecting previously unselected package python3-zopfli. 262s Preparing to unpack .../71-python3-zopfli_0.4.0-1_s390x.deb ... 262s Unpacking python3-zopfli 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package python3-custodian. 267s Preparing to unpack .../77-python3-custodian_2024.10.16-1_all.deb ... 267s Unpacking python3-custodian (2024.10.16-1) ... 267s Selecting previously unselected package python3-fastjsonschema. 268s Preparing to unpack .../78-python3-fastjsonschema_2.21.1-1_all.deb ... 268s Unpacking python3-fastjsonschema (2.21.1-1) ... 268s Selecting previously unselected package python3-iniconfig. 268s Preparing to unpack .../79-python3-iniconfig_2.1.0-2_all.deb ... 268s Unpacking python3-iniconfig (2.1.0-2) ... 268s Selecting previously unselected package python3-joblib. 268s Preparing to unpack .../80-python3-joblib_1.5.2-1_all.deb ... 268s Unpacking python3-joblib (1.5.2-1) ... 268s Selecting previously unselected package python3-platformdirs. 268s Preparing to unpack .../81-python3-platformdirs_4.5.1-1_all.deb ... 268s Unpacking python3-platformdirs (4.5.1-1) ... 268s Selecting previously unselected package python3-traitlets. 268s Preparing to unpack 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... 273s Unpacking python3-palettable (3.3.3-3) ... 273s Selecting previously unselected package python3-tenacity. 273s Preparing to unpack .../88-python3-tenacity_9.0.0-0ubuntu1_all.deb ... 273s Unpacking python3-tenacity (9.0.0-0ubuntu1) ... 273s Selecting previously unselected package python3-plotly. 273s Preparing to unpack .../89-python3-plotly_5.20.0+dfsg-1.1_all.deb ... 273s Unpacking python3-plotly (5.20.0+dfsg-1.1) ... 279s Selecting previously unselected package python3-pluggy. 279s Preparing to unpack .../90-python3-pluggy_1.6.0-2_all.deb ... 279s Unpacking python3-pluggy (1.6.0-2) ... 279s Selecting previously unselected package python3-pybtex. 279s Preparing to unpack .../91-python3-pybtex_0.25.1-1_all.deb ... 279s Unpacking python3-pybtex (0.25.1-1) ... 280s Selecting previously unselected package python3-spglib. 280s Preparing to unpack .../92-python3-spglib_2.7.0-1_s390x.deb ... 280s Unpacking python3-spglib (2.7.0-1) ... 280s Selecting previously unselected package python3-tabulate. 280s Preparing to unpack .../93-python3-tabulate_0.9.0-1build1_all.deb ... 280s Unpacking python3-tabulate (0.9.0-1build1) ... 280s Selecting previously unselected package python3-uncertainties. 280s Preparing to unpack .../94-python3-uncertainties_3.2.3-4_all.deb ... 280s Unpacking python3-uncertainties (3.2.3-4) ... 281s Selecting previously unselected package python3-pymatgen. 281s Preparing to unpack .../95-python3-pymatgen_2025.2.18+dfsg1-5_s390x.deb ... 281s Unpacking python3-pymatgen (2025.2.18+dfsg1-5) ... 282s Selecting previously unselected package python3-pytest. 282s Preparing to unpack .../96-python3-pytest_9.0.2-2_all.deb ... 282s Unpacking python3-pytest (9.0.2-2) ... 282s Setting up libgraphite2-3:s390x (1.3.14-11ubuntu1) ... 282s Setting up liblcms2-2:s390x (2.17-1) ... 282s Setting up python3-iniconfig (2.1.0-2) ... 288s Setting up libsharpyuv0:s390x (1.5.0-0.1build1) ... 288s Setting up python3-pydantic-core (2.41.5-2) ... 289s Setting up python3-typing-inspection (0.4.2-1) ... 291s Setting up libxrender1:s390x (1:0.9.12-1) ... 291s Setting up python3-joblib (1.5.2-1) ... 294s Setting up python3-lz4 (4.4.5+dfsg-1) ... 295s Setting up fonts-lyx (2.5.0~RC2-3) ... 295s Setting up python3-tenacity (9.0.0-0ubuntu1) ... 297s Setting up python3-tqdm (4.67.1-7) ... 300s Setting up python3-ruamel.yaml.clib (0.2.15+ds-1) ... 300s Setting up x11-common (1:7.7+24ubuntu1) ... 303s Setting up libdeflate0:s390x (1.23-2build1) ... 303s Setting up python3-tabulate (0.9.0-1build1) ... 304s Setting up python3-latexcodec (3.0.0-1) ... 305s Setting up libqhull-r8.0:s390x (2020.2-8) ... 305s Setting up python3-pytz (2025.2-5) ... 306s Setting up libgomp1:s390x (15.2.0-12ubuntu1) ... 306s Setting up python3-networkx (3.2.1-4ubuntu2) ... 321s Setting up libjbig0:s390x (2.1-6.1ubuntu3) ... 321s Setting up python3-annotated-types (0.7.0-1) ... 322s Setting up python3-platformdirs (4.5.1-1) ... 323s Setting up python3-psutil (7.1.0-1ubuntu1) ... 326s Setting up unicode-data (16.0.0-1build1) ... 326s Setting up libsymspg2:s390x (2.7.0-1) ... 326s Setting up python3-bson (4.16.0-1) ... 328s Setting up python3-palettable (3.3.3-3) ... 331s Setting up python3-decorator (5.2.1-2) ... 332s Setting up libblas3:s390x (3.12.1-7ubuntu1) ... 333s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 333s Setting up libzopfli1 (1.0.3-3build1) ... 333s Setting up libfreetype6:s390x (2.14.1+dfsg-2) ... 333s Setting up python3-brotli (1.1.0-2build6) ... 334s Setting up python3-cycler (0.12.1-2) ... 335s Setting up libimagequant0:s390x (2.18.0-1build1) ... 335s Setting up python3-sentry-sdk (2.22.0-1) ... 338s Setting up fonts-dejavu-mono (2.37-8build1) ... 338s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 340s Setting up python3-numpy-dev:s390x (1:2.3.5+ds-3) ... 340s Setting up libtcl8.6:s390x (8.6.17+dfsg-1build1) ... 340s Setting up fonts-dejavu-core (2.37-8build1) ... 340s Setting up libjpeg-turbo8:s390x (2.1.5-4ubuntu3) ... 340s Setting up libgfortran5:s390x (15.2.0-12ubuntu1) ... 340s Setting up python3-pluggy (1.6.0-2) ... 341s Setting up libwebp7:s390x (1.5.0-0.1build1) ... 341s Setting up python3-pybtex (0.25.1-1) ... 343s Setting up python3-fastjsonschema (2.21.1-1) ... 343s Setting up python3-ruamel.yaml (0.18.10+ds-1) ... 346s Setting up python3-dnspython (2.7.0-1ubuntu2) ... 351s Setting up python3-traitlets (5.14.3+really5.14.3-2) ... 353s Setting up libxslt1.1:s390x (1.1.43-0.3) ... 353s Setting up libopenjp2-7:s390x (2.5.4-1) ... 353s Setting up libharfbuzz0b:s390x (12.3.2-1) ... 353s Setting up python3-email-validator (2.2.0-1) ... 355s Setting up libxss1:s390x (1:1.2.3-1build4) ... 355s Setting up python3-mpmath (1.3.0-2) ... 361s Setting up python-matplotlib-data (3.10.7+dfsg1-2) ... 361s Setting up libwebpmux3:s390x (1.5.0-0.1build1) ... 361s Setting up python3.14-minimal (3.14.2-1) ... 371s Setting up python3-jupyter-core (5.9.1-1) ... 372s Setting up python3-uncertainties (3.2.3-4) ... 374s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 374s Setting up python3-sympy (1.14.0-2) ... 458s /usr/lib/python3/dist-packages/sympy/testing/runtests.py:283: SyntaxWarning: 'return' in a 'finally' block 458s return p.returncode 461s Setting up liblapack3:s390x (3.12.1-7ubuntu1) ... 461s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 461s Setting up fontconfig-config (2.17.1-3ubuntu1) ... 463s Setting up python3-pytest (9.0.2-2) ... 466s Setting up libwebpdemux2:s390x (1.5.0-0.1build1) ... 466s Setting up python3-nbformat (5.10.4-1) ... 468s Setting up python3-zopfli (0.4.0-1) ... 469s Setting up python3-pydantic (2.12.5-2) ... 473s Setting up libraqm0:s390x (0.10.4-1) ... 473s Setting up python3-plotly (5.20.0+dfsg-1.1) ... 537s Setting up python3-numpy (1:2.3.5+ds-3) ... 564s Setting up python3-lxml:s390x (6.0.2-1) ... 565s Setting up libtiff6:s390x (4.7.0-3ubuntu3) ... 565s Setting up python3-contourpy (1.3.3-1) ... 567s Setting up libfontconfig1:s390x (2.17.1-3ubuntu1) ... 567s Setting up python3.14 (3.14.2-1) ... 581s Setting up python3-spglib (2.7.0-1) ... 582s Setting up libxft2:s390x (2.3.6-1build2) ... 582s Setting up python3-scipy (1.16.3-4) ... 631s Setting up libtk8.6:s390x (8.6.17-1) ... 631s Setting up python3-pandas-lib:s390x (2.3.3+dfsg-3) ... 631s Setting up python3-all (3.13.9-3) ... 631s Setting up python3.13-tk (3.13.11-1) ... 632s Setting up python3-pil:s390x (12.0.0-1ubuntu1) ... 636s Setting up python3-pandas (2.3.3+dfsg-3) ... 697s Setting up python3-monty (2025.3.3-1) ... 698s Setting up python3.14-tk (3.14.2-1) ... 700s Setting up python3-tk (3.13.9-3) ... 700s Setting up python3-pil.imagetk:s390x (12.0.0-1ubuntu1) ... 701s Setting up python3-fonttools (4.61.1-3) ... 714s Setting up python3-ufolib2 (0.18.1+dfsg1-1) ... 715s Setting up python3-matplotlib (3.10.7+dfsg1-2) ... 738s Setting up python3-pymatgen (2025.2.18+dfsg1-5) ... 757s Setting up python3-custodian (2024.10.16-1) ... 759s Processing triggers for libc-bin (2.42-2ubuntu4) ... 761s Processing triggers for systemd (259-1ubuntu3) ... 761s Processing triggers for man-db (2.13.1-1build1) ... 788s autopkgtest [08:34:20]: test test-custodian: [----------------------- 797s ============================= test session starts ============================== 797s platform linux -- Python 3.14.2, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3.14 797s cachedir: .pytest_cache 797s rootdir: /tmp/autopkgtest.ODQftC/autopkgtest_tmp/runtests 797s plugins: typeguard-4.4.4 820s collecting ... collected 18 items / 13 errors / 3 skipped 820s 820s ==================================== ERRORS ==================================== 820s _________________ ERROR collecting tests/cp2k/test_handlers.py _________________ 820s ImportError while importing test module '/tmp/autopkgtest.ODQftC/autopkgtest_tmp/runtests/tests/cp2k/test_handlers.py'. 820s Hint: make sure your test modules/packages have valid Python names. 820s Traceback: 820s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 820s return _bootstrap._gcd_import(name[level:], package, level) 820s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 820s tests/cp2k/test_handlers.py:11: in 820s from pymatgen.io.cp2k.inputs import Keyword, KeywordList 820s /usr/lib/python3/dist-packages/pymatgen/io/cp2k/inputs.py:39: in 820s from pymatgen.core import Element 820s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 820s from pymatgen.core.lattice import Lattice 820s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 820s from pymatgen.util.coord import pbc_shortest_vectors 820s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 820s from pymatgen.util import coord_cython 820s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 820s ___________________ ERROR collecting tests/cp2k/test_jobs.py ___________________ 820s ImportError while importing test module '/tmp/autopkgtest.ODQftC/autopkgtest_tmp/runtests/tests/cp2k/test_jobs.py'. 820s Hint: make sure your test modules/packages have valid Python names. 820s Traceback: 820s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 820s return _bootstrap._gcd_import(name[level:], package, level) 820s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 820s tests/cp2k/test_jobs.py:10: in 820s from custodian.cp2k.jobs import Cp2kJob 820s /usr/lib/python3/dist-packages/custodian/cp2k/jobs.py:10: in 820s from pymatgen.io.cp2k.inputs import Cp2kInput, Keyword 820s /usr/lib/python3/dist-packages/pymatgen/io/cp2k/inputs.py:39: in 820s from pymatgen.core import Element 820s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 820s from pymatgen.core.lattice import Lattice 820s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 820s from pymatgen.util.coord import pbc_shortest_vectors 820s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 820s from pymatgen.util import coord_cython 820s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 820s _________________ ERROR collecting tests/feff/test_handlers.py _________________ 820s ImportError while importing test module '/tmp/autopkgtest.ODQftC/autopkgtest_tmp/runtests/tests/feff/test_handlers.py'. 820s Hint: make sure your test modules/packages have valid Python names. 820s Traceback: 820s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 820s return _bootstrap._gcd_import(name[level:], package, level) 820s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 820s tests/feff/test_handlers.py:6: in 820s from custodian.feff.handlers import UnconvergedErrorHandler 820s /usr/lib/python3/dist-packages/custodian/feff/handlers.py:9: in 820s from pymatgen.io.feff.sets import FEFFDictSet 820s /usr/lib/python3/dist-packages/pymatgen/io/feff/__init__.py:9: in 820s from .inputs import ( 820s /usr/lib/python3/dist-packages/pymatgen/io/feff/inputs.py:20: in 820s from pymatgen.core import Element, Lattice, Molecule, Structure 820s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 820s from pymatgen.core.lattice import Lattice 820s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 820s from pymatgen.util.coord import pbc_shortest_vectors 820s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 820s from pymatgen.util import coord_cython 820s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 820s ___________________ ERROR collecting tests/feff/test_jobs.py ___________________ 820s ImportError while importing test module '/tmp/autopkgtest.ODQftC/autopkgtest_tmp/runtests/tests/feff/test_jobs.py'. 820s Hint: make sure your test modules/packages have valid Python names. 820s Traceback: 820s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 820s return _bootstrap._gcd_import(name[level:], package, level) 820s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 820s tests/feff/test_jobs.py:5: in 820s from pymatgen.io.feff.inputs import Atoms, Tags 820s /usr/lib/python3/dist-packages/pymatgen/io/feff/__init__.py:9: in 820s from .inputs import ( 820s /usr/lib/python3/dist-packages/pymatgen/io/feff/inputs.py:20: in 820s from pymatgen.core import Element, Lattice, Molecule, Structure 820s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 820s from pymatgen.core.lattice import Lattice 820s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 820s from pymatgen.util.coord import pbc_shortest_vectors 820s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 820s from pymatgen.util import coord_cython 820s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 820s _______________ ERROR collecting tests/gaussian/test_handlers.py _______________ 820s ImportError while importing test module '/tmp/autopkgtest.ODQftC/autopkgtest_tmp/runtests/tests/gaussian/test_handlers.py'. 820s Hint: make sure your test modules/packages have valid Python names. 820s Traceback: 820s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 820s return _bootstrap._gcd_import(name[level:], package, level) 820s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 820s tests/gaussian/test_handlers.py:8: in 820s from custodian.gaussian.handlers import GaussianErrorHandler, WallTimeErrorHandler 820s /usr/lib/python3/dist-packages/custodian/gaussian/handlers.py:16: in 820s from pymatgen.io.gaussian import GaussianInput, GaussianOutput 820s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:14: in 820s from pymatgen.core import Composition, Element, Molecule 820s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 820s from pymatgen.core.lattice import Lattice 820s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 820s from pymatgen.util.coord import pbc_shortest_vectors 820s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 820s from pymatgen.util import coord_cython 820s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 820s _________________ ERROR collecting tests/gaussian/test_jobs.py _________________ 820s ImportError while importing test module '/tmp/autopkgtest.ODQftC/autopkgtest_tmp/runtests/tests/gaussian/test_jobs.py'. 820s Hint: make sure your test modules/packages have valid Python names. 820s Traceback: 820s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 820s return _bootstrap._gcd_import(name[level:], package, level) 820s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 820s tests/gaussian/test_jobs.py:7: in 820s from custodian.gaussian.jobs import GaussianJob 820s /usr/lib/python3/dist-packages/custodian/gaussian/jobs.py:12: in 820s from pymatgen.io.gaussian import GaussianInput, GaussianOutput 820s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:14: in 820s from pymatgen.core import Composition, Element, Molecule 820s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 820s from pymatgen.core.lattice import Lattice 820s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 820s from pymatgen.util.coord import pbc_shortest_vectors 820s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 820s from pymatgen.util import coord_cython 820s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 820s _______________ ERROR collecting tests/lobster/test_handlers.py ________________ 820s ImportError while importing test module '/tmp/autopkgtest.ODQftC/autopkgtest_tmp/runtests/tests/lobster/test_handlers.py'. 820s Hint: make sure your test modules/packages have valid Python names. 820s Traceback: 820s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 820s return _bootstrap._gcd_import(name[level:], package, level) 820s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 820s tests/lobster/test_handlers.py:3: in 820s from custodian.lobster.handlers import ChargeSpillingValidator, EnoughBandsValidator, LobsterFilesValidator 820s /usr/lib/python3/dist-packages/custodian/lobster/handlers.py:5: in 820s from pymatgen.io.lobster import Lobsterout 820s /usr/lib/python3/dist-packages/pymatgen/io/lobster/__init__.py:10: in 820s from .inputs import Lobsterin 820s /usr/lib/python3/dist-packages/pymatgen/io/lobster/inputs.py:26: in 820s from pymatgen.core.structure import Structure 820s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 820s from pymatgen.core.lattice import Lattice 820s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 820s from pymatgen.util.coord import pbc_shortest_vectors 820s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 820s from pymatgen.util import coord_cython 820s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 820s ________________ ERROR collecting tests/nwchem/test_handlers.py ________________ 820s ImportError while importing test module '/tmp/autopkgtest.ODQftC/autopkgtest_tmp/runtests/tests/nwchem/test_handlers.py'. 820s Hint: make sure your test modules/packages have valid Python names. 820s Traceback: 820s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 820s return _bootstrap._gcd_import(name[level:], package, level) 820s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 820s tests/nwchem/test_handlers.py:5: in 820s from custodian.nwchem.handlers import NwchemErrorHandler 820s /usr/lib/python3/dist-packages/custodian/nwchem/handlers.py:8: in 820s from pymatgen.io.nwchem import NwInput, NwOutput 820s /usr/lib/python3/dist-packages/pymatgen/io/nwchem.py:33: in 820s from pymatgen.analysis.excitation import ExcitationSpectrum 820s /usr/lib/python3/dist-packages/pymatgen/analysis/excitation.py:5: in 820s from pymatgen.core.spectrum import Spectrum 820s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 820s from pymatgen.core.lattice import Lattice 820s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 820s from pymatgen.util.coord import pbc_shortest_vectors 820s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 820s from pymatgen.util import coord_cython 820s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 820s _________________ ERROR collecting tests/vasp/test_handlers.py _________________ 820s ImportError while importing test module '/tmp/autopkgtest.ODQftC/autopkgtest_tmp/runtests/tests/vasp/test_handlers.py'. 820s Hint: make sure your test modules/packages have valid Python names. 820s Traceback: 820s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 820s return _bootstrap._gcd_import(name[level:], package, level) 820s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 820s tests/vasp/test_handlers.py:10: in 820s from pymatgen.io.vasp.inputs import Incar, Kpoints, Structure, VaspInput 820s /usr/lib/python3/dist-packages/pymatgen/io/vasp/__init__.py:10: in 820s from .inputs import Incar, Kpoints, Poscar, Potcar, PotcarSingle, VaspInput 820s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:35: in 820s from pymatgen.core import SETTINGS, Element, Lattice, Structure, get_el_sp 820s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 820s from pymatgen.core.lattice import Lattice 820s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 820s from pymatgen.util.coord import pbc_shortest_vectors 820s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 820s from pymatgen.util import coord_cython 820s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 820s ____________________ ERROR collecting tests/vasp/test_io.py ____________________ 820s ImportError while importing test module '/tmp/autopkgtest.ODQftC/autopkgtest_tmp/runtests/tests/vasp/test_io.py'. 820s Hint: make sure your test modules/packages have valid Python names. 820s Traceback: 820s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 820s return _bootstrap._gcd_import(name[level:], package, level) 820s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 820s tests/vasp/test_io.py:5: in 820s from custodian.vasp.io import load_outcar, load_vasprun 820s /usr/lib/python3/dist-packages/custodian/vasp/io.py:3: in 820s from pymatgen.io.vasp.outputs import Outcar, Vasprun 820s /usr/lib/python3/dist-packages/pymatgen/io/vasp/__init__.py:10: in 820s from .inputs import Incar, Kpoints, Poscar, Potcar, PotcarSingle, VaspInput 820s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:35: in 820s from pymatgen.core import SETTINGS, Element, Lattice, Structure, get_el_sp 820s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 820s from pymatgen.core.lattice import Lattice 820s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 820s from pymatgen.util.coord import pbc_shortest_vectors 820s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 820s from pymatgen.util import coord_cython 820s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 820s ___________________ ERROR collecting tests/vasp/test_jobs.py ___________________ 820s ImportError while importing test module '/tmp/autopkgtest.ODQftC/autopkgtest_tmp/runtests/tests/vasp/test_jobs.py'. 820s Hint: make sure your test modules/packages have valid Python names. 820s Traceback: 820s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 820s return _bootstrap._gcd_import(name[level:], package, level) 820s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 820s tests/vasp/test_jobs.py:10: in 820s from pymatgen.io.vasp import Incar, Kpoints, Poscar 820s /usr/lib/python3/dist-packages/pymatgen/io/vasp/__init__.py:10: in 820s from .inputs import Incar, Kpoints, Poscar, Potcar, PotcarSingle, VaspInput 820s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:35: in 820s from pymatgen.core import SETTINGS, Element, Lattice, Structure, get_el_sp 820s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 820s from pymatgen.core.lattice import Lattice 820s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 820s from pymatgen.util.coord import pbc_shortest_vectors 820s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 820s from pymatgen.util import coord_cython 820s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 820s __________________ ERROR collecting tests/vasp/test_utils.py ___________________ 820s ImportError while importing test module '/tmp/autopkgtest.ODQftC/autopkgtest_tmp/runtests/tests/vasp/test_utils.py'. 820s Hint: make sure your test modules/packages have valid Python names. 820s Traceback: 820s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 820s return _bootstrap._gcd_import(name[level:], package, level) 820s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 820s tests/vasp/test_utils.py:8: in 820s from pymatgen.core import Lattice, Structure 820s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 820s from pymatgen.core.lattice import Lattice 820s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 820s from pymatgen.util.coord import pbc_shortest_vectors 820s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 820s from pymatgen.util import coord_cython 820s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 820s ________________ ERROR collecting tests/vasp/test_validators.py ________________ 820s ImportError while importing test module '/tmp/autopkgtest.ODQftC/autopkgtest_tmp/runtests/tests/vasp/test_validators.py'. 820s Hint: make sure your test modules/packages have valid Python names. 820s Traceback: 820s /usr/lib/python3.14/importlib/__init__.py:88: in import_module 820s return _bootstrap._gcd_import(name[level:], package, level) 820s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 820s tests/vasp/test_validators.py:6: in 820s from custodian.vasp.validators import VaspAECCARValidator, VaspFilesValidator, VaspNpTMDValidator, VasprunXMLValidator 820s /usr/lib/python3/dist-packages/custodian/vasp/validators.py:9: in 820s from pymatgen.io.vasp import Chgcar, Incar 820s /usr/lib/python3/dist-packages/pymatgen/io/vasp/__init__.py:10: in 820s from .inputs import Incar, Kpoints, Poscar, Potcar, PotcarSingle, VaspInput 820s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:35: in 820s from pymatgen.core import SETTINGS, Element, Lattice, Structure, get_el_sp 820s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:13: in 820s from pymatgen.core.lattice import Lattice 820s /usr/lib/python3/dist-packages/pymatgen/core/lattice.py:21: in 820s from pymatgen.util.coord import pbc_shortest_vectors 820s /usr/lib/python3/dist-packages/pymatgen/util/coord.py:15: in 820s from pymatgen.util import coord_cython 820s E ImportError: cannot import name 'coord_cython' from 'pymatgen.util' (/usr/lib/python3/dist-packages/pymatgen/util/__init__.py) 820s =========================== short test summary info ============================ 820s ERROR tests/cp2k/test_handlers.py 820s ERROR tests/cp2k/test_jobs.py 820s ERROR tests/feff/test_handlers.py 820s ERROR tests/feff/test_jobs.py 820s ERROR tests/gaussian/test_handlers.py 820s ERROR tests/gaussian/test_jobs.py 820s ERROR tests/lobster/test_handlers.py 820s ERROR tests/nwchem/test_handlers.py 820s ERROR tests/vasp/test_handlers.py 820s ERROR tests/vasp/test_io.py 820s ERROR tests/vasp/test_jobs.py 820s ERROR tests/vasp/test_utils.py 820s ERROR tests/vasp/test_validators.py 820s !!!!!!!!!!!!!!!!!!! Interrupted: 13 errors during collection !!!!!!!!!!!!!!!!!!! 820s ======================== 3 skipped, 13 errors in 21.48s ======================== 821s autopkgtest [08:34:53]: test test-custodian: -----------------------] 823s test-custodian FAIL non-zero exit status 2 823s autopkgtest [08:34:55]: test test-custodian: - - - - - - - - - - results - - - - - - - - - - 825s autopkgtest [08:34:57]: @@@@@@@@@@@@@@@@@@@@ summary 825s test-custodian FAIL non-zero exit status 2