0s autopkgtest [05:42:36]: starting date and time: 2026-02-04 05:42:36+0000 0s autopkgtest [05:42:36]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [05:42:36]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.x_owuhta/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pymatgen,src:sphinx-rtd-theme --apt-upgrade custodian --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=pymatgen/2025.10.7+dfsg1-1ubuntu1 sphinx-rtd-theme/3.1.0+dfsg-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-s390x-7.secgroup --name adt-resolute-s390x-custodian-20260204-054236-juju-7f2275-prod-proposed-migration-environment-15-9064af1b-6da3-4b4a-abe8-2879eef24853 --image adt/ubuntu-resolute-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-s390x -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-s390x-custodian-20260204-054236-juju-7f2275-prod-proposed-migration-environment-15-9064af1b-6da3-4b4a-abe8-2879eef24853 from image adt/ubuntu-resolute-s390x-server-20260203.img (UUID 733879ca-10c9-4d0b-9d4a-492c78d47079)... 54s autopkgtest [05:43:30]: testbed dpkg architecture: s390x 54s autopkgtest [05:43:30]: testbed apt version: 3.1.14 54s autopkgtest [05:43:30]: @@@@@@@@@@@@@@@@@@@@ test bed setup 54s autopkgtest [05:43:30]: testbed release detected to be: None 55s autopkgtest [05:43:31]: updating testbed package index (apt update) 55s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 55s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 55s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 55s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 55s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 55s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [234 kB] 55s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1714 kB] 55s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [35.1 kB] 56s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x Packages [282 kB] 56s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe s390x Packages [1315 kB] 56s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse s390x Packages [7556 B] 57s Fetched 3717 kB in 2s (2199 kB/s) 59s Reading package lists... 60s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 60s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 60s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 60s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 62s Reading package lists... 62s Reading package lists... 62s Building dependency tree... 62s Reading state information... 62s Calculating upgrade... 63s The following packages will be upgraded: 63s htop libzstd1 powermgmt-base python3-lazr.restfulclient systemd-hwe-hwdb 63s zstd 63s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 63s Need to get 1320 kB of archives. 63s After this operation, 1024 B of additional disk space will be used. 63s Get:1 http://ftpmaster.internal/ubuntu resolute/main s390x libzstd1 s390x 1.5.7+dfsg-3 [346 kB] 63s Get:2 http://ftpmaster.internal/ubuntu resolute/main s390x systemd-hwe-hwdb all 259.0.1 [3152 B] 63s Get:3 http://ftpmaster.internal/ubuntu resolute/main s390x powermgmt-base all 1.38ubuntu2 [7878 B] 63s Get:4 http://ftpmaster.internal/ubuntu resolute/main s390x htop s390x 3.4.1-5build2 [188 kB] 63s Get:5 http://ftpmaster.internal/ubuntu resolute/main s390x python3-lazr.restfulclient all 0.14.6-3build1 [51.1 kB] 63s Get:6 http://ftpmaster.internal/ubuntu resolute/main s390x zstd s390x 1.5.7+dfsg-3 [724 kB] 64s dpkg-preconfigure: unable to re-open stdin: No such file or directory 64s Fetched 1320 kB in 0s (6159 kB/s) 65s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61953 files and directories currently installed.) 65s Preparing to unpack .../libzstd1_1.5.7+dfsg-3_s390x.deb ... 65s Unpacking libzstd1:s390x (1.5.7+dfsg-3) over (1.5.7+dfsg-2) ... 65s Setting up libzstd1:s390x (1.5.7+dfsg-3) ... 65s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61953 files and directories currently installed.) 65s Preparing to unpack .../systemd-hwe-hwdb_259.0.1_all.deb ... 65s Unpacking systemd-hwe-hwdb (259.0.1) over (257.7.1) ... 65s Preparing to unpack .../powermgmt-base_1.38ubuntu2_all.deb ... 65s Unpacking powermgmt-base (1.38ubuntu2) over (1.38ubuntu1) ... 65s Preparing to unpack .../htop_3.4.1-5build2_s390x.deb ... 65s Unpacking htop (3.4.1-5build2) over (3.4.1-5build1) ... 65s Preparing to unpack .../python3-lazr.restfulclient_0.14.6-3build1_all.deb ... 65s Unpacking python3-lazr.restfulclient (0.14.6-3build1) over (0.14.6-3) ... 65s Preparing to unpack .../zstd_1.5.7+dfsg-3_s390x.deb ... 65s Unpacking zstd (1.5.7+dfsg-3) over (1.5.7+dfsg-2) ... 65s Setting up powermgmt-base (1.38ubuntu2) ... 65s Setting up htop (3.4.1-5build2) ... 65s Setting up systemd-hwe-hwdb (259.0.1) ... 67s Setting up python3-lazr.restfulclient (0.14.6-3build1) ... 67s Setting up zstd (1.5.7+dfsg-3) ... 67s Processing triggers for man-db (2.13.1-1) ... 69s Processing triggers for udev (259-1ubuntu3) ... 70s Processing triggers for libc-bin (2.42-2ubuntu4) ... 71s autopkgtest [05:43:47]: upgrading testbed (apt dist-upgrade and autopurge) 71s Reading package lists... 71s Building dependency tree... 71s Reading state information... 71s Calculating upgrade... 72s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 72s Reading package lists... 72s Building dependency tree... 72s Reading state information... 72s Solving dependencies... 73s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 75s autopkgtest [05:43:51]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP Mon Jan 12 15:39:23 UTC 2026 75s autopkgtest [05:43:51]: @@@@@@@@@@@@@@@@@@@@ apt-source custodian 79s Get:1 http://ftpmaster.internal/ubuntu resolute/universe custodian 2024.10.16-1 (dsc) [2442 B] 79s Get:2 http://ftpmaster.internal/ubuntu resolute/universe custodian 2024.10.16-1 (tar) [51.2 MB] 79s Get:3 http://ftpmaster.internal/ubuntu resolute/universe custodian 2024.10.16-1 (diff) [8360 B] 79s gpgv: Signature made Sat Feb 15 20:44:02 2025 UTC 79s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 79s gpgv: Can't check signature: No public key 79s dpkg-source: warning: cannot verify inline signature for ./custodian_2024.10.16-1.dsc: no acceptable signature found 81s autopkgtest [05:43:57]: testing package custodian version 2024.10.16-1 81s autopkgtest [05:43:57]: build not needed 98s autopkgtest [05:44:14]: test test-custodian: preparing testbed 98s Reading package lists... 98s Building dependency tree... 98s Reading state information... 98s Solving dependencies... 99s The following NEW packages will be installed: 99s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libblas3 99s libdeflate0 libfontconfig1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 99s libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 99s liblcms2-2 libopenjp2-7 libpython3.14-minimal libpython3.14-stdlib 99s libqhull-r8.0 libraqm0 libsharpyuv0 libsymspg2 libtcl8.6 libtiff6 libtk8.6 99s libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 99s libzopfli1 python-matplotlib-data python3-all python3-annotated-types 99s python3-bibtexparser python3-brotli python3-bson python3-contourpy 99s python3-custodian python3-cycler python3-decorator python3-dnspython 99s python3-email-validator python3-fastjsonschema python3-fonttools 99s python3-iniconfig python3-joblib python3-jupyter-core python3-kiwisolver 99s python3-lxml python3-lz4 python3-matplotlib python3-monty python3-mpmath 99s python3-nbformat python3-networkx python3-numpy python3-numpy-dev 99s python3-orjson python3-palettable python3-pandas python3-pandas-lib 99s python3-pil python3-pil.imagetk python3-platformdirs python3-plotly 99s python3-pluggy python3-psutil python3-pydantic python3-pydantic-core 99s python3-pymatgen python3-pytest python3-pytz python3-ruamel.yaml 99s python3-ruamel.yaml.clib python3-scipy python3-sentry-sdk python3-spglib 99s python3-sympy python3-tabulate python3-tenacity python3-tk python3-tqdm 99s python3-traitlets python3-typing-inspection python3-ufolib2 99s python3-uncertainties python3-zopfli python3.13-tk python3.14 99s python3.14-minimal python3.14-tk unicode-data x11-common 99s 0 upgraded, 99 newly installed, 0 to remove and 0 not upgraded. 99s Need to get 116 MB of archives. 99s After this operation, 606 MB of additional disk space will be used. 99s Get:1 http://ftpmaster.internal/ubuntu resolute/main s390x python3-numpy-dev s390x 1:2.3.5+ds-3 [146 kB] 99s Get:2 http://ftpmaster.internal/ubuntu resolute/main s390x libblas3 s390x 3.12.1-7ubuntu1 [255 kB] 99s Get:3 http://ftpmaster.internal/ubuntu resolute/main s390x libgfortran5 s390x 15.2.0-12ubuntu1 [629 kB] 99s Get:4 http://ftpmaster.internal/ubuntu resolute/main s390x liblapack3 s390x 3.12.1-7ubuntu1 [2983 kB] 99s Get:5 http://ftpmaster.internal/ubuntu resolute/main s390x python3-numpy s390x 1:2.3.5+ds-3 [5305 kB] 100s Get:6 http://ftpmaster.internal/ubuntu resolute/main s390x libpython3.14-minimal s390x 3.14.2-1 [917 kB] 100s Get:7 http://ftpmaster.internal/ubuntu resolute/main s390x python3.14-minimal s390x 3.14.2-1 [2510 kB] 100s Get:8 http://ftpmaster.internal/ubuntu resolute/main s390x fonts-dejavu-mono all 2.37-8build1 [502 kB] 100s Get:9 http://ftpmaster.internal/ubuntu resolute/main s390x fonts-dejavu-core all 2.37-8build1 [834 kB] 100s Get:10 http://ftpmaster.internal/ubuntu resolute/main s390x fontconfig-config s390x 2.17.1-3ubuntu1 [38.5 kB] 100s Get:11 http://ftpmaster.internal/ubuntu resolute/universe s390x fonts-lyx all 2.5.0~RC2-3 [171 kB] 100s Get:12 http://ftpmaster.internal/ubuntu resolute/main s390x libdeflate0 s390x 1.23-2 [46.0 kB] 100s Get:13 http://ftpmaster.internal/ubuntu resolute/main s390x libfreetype6 s390x 2.14.1+dfsg-2 [443 kB] 100s Get:14 http://ftpmaster.internal/ubuntu resolute/main s390x libfontconfig1 s390x 2.17.1-3ubuntu1 [152 kB] 100s Get:15 http://ftpmaster.internal/ubuntu resolute/main s390x libgomp1 s390x 15.2.0-12ubuntu1 [154 kB] 100s Get:16 http://ftpmaster.internal/ubuntu resolute/main s390x libgraphite2-3 s390x 1.3.14-11ubuntu1 [80.5 kB] 100s Get:17 http://ftpmaster.internal/ubuntu resolute/main s390x libharfbuzz0b s390x 12.3.2-1 [562 kB] 100s Get:18 http://ftpmaster.internal/ubuntu resolute/main s390x libimagequant0 s390x 2.18.0-1build1 [43.3 kB] 100s Get:19 http://ftpmaster.internal/ubuntu resolute/main s390x libjpeg-turbo8 s390x 2.1.5-4ubuntu2 [147 kB] 100s Get:20 http://ftpmaster.internal/ubuntu resolute/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 100s Get:21 http://ftpmaster.internal/ubuntu resolute/main s390x liblcms2-2 s390x 2.17-1 [176 kB] 100s Get:22 http://ftpmaster.internal/ubuntu resolute/main s390x libpython3.14-stdlib s390x 3.14.2-1 [2373 kB] 100s Get:23 http://ftpmaster.internal/ubuntu resolute/universe s390x libqhull-r8.0 s390x 2020.2-8 [199 kB] 100s Get:24 http://ftpmaster.internal/ubuntu resolute/main s390x libraqm0 s390x 0.10.3-1 [15.6 kB] 100s Get:25 http://ftpmaster.internal/ubuntu resolute/main s390x libsharpyuv0 s390x 1.5.0-0.1build1 [16.6 kB] 101s Get:26 http://ftpmaster.internal/ubuntu resolute/universe s390x libsymspg2 s390x 2.7.0-1 [215 kB] 101s Get:27 http://ftpmaster.internal/ubuntu resolute/main s390x libtcl8.6 s390x 8.6.17+dfsg-1build1 [1033 kB] 101s Get:28 http://ftpmaster.internal/ubuntu resolute/main s390x libjbig0 s390x 2.1-6.1ubuntu3 [32.8 kB] 101s Get:29 http://ftpmaster.internal/ubuntu resolute/main s390x libwebp7 s390x 1.5.0-0.1build1 [227 kB] 101s Get:30 http://ftpmaster.internal/ubuntu resolute/main s390x libtiff6 s390x 4.7.0-3ubuntu3 [222 kB] 101s Get:31 http://ftpmaster.internal/ubuntu resolute/main s390x libxrender1 s390x 1:0.9.12-1 [20.9 kB] 101s Get:32 http://ftpmaster.internal/ubuntu resolute/main s390x libxft2 s390x 2.3.6-1build2 [48.0 kB] 101s Get:33 http://ftpmaster.internal/ubuntu resolute/main s390x x11-common all 1:7.7+24ubuntu1 [22.4 kB] 101s Get:34 http://ftpmaster.internal/ubuntu resolute/main s390x libxss1 s390x 1:1.2.3-1build4 [7138 B] 101s Get:35 http://ftpmaster.internal/ubuntu resolute/main s390x libtk8.6 s390x 8.6.17-1 [828 kB] 101s Get:36 http://ftpmaster.internal/ubuntu resolute/main s390x libwebpdemux2 s390x 1.5.0-0.1build1 [12.5 kB] 101s Get:37 http://ftpmaster.internal/ubuntu resolute/main s390x libwebpmux3 s390x 1.5.0-0.1build1 [25.7 kB] 101s Get:38 http://ftpmaster.internal/ubuntu resolute/main s390x libxslt1.1 s390x 1.1.43-0.3 [163 kB] 101s Get:39 http://ftpmaster.internal/ubuntu resolute/universe s390x libzopfli1 s390x 1.0.3-3build1 [124 kB] 101s Get:40 http://ftpmaster.internal/ubuntu resolute/universe s390x python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 101s Get:41 http://ftpmaster.internal/ubuntu resolute/main s390x python3.14 s390x 3.14.2-1 [816 kB] 101s Get:42 http://ftpmaster.internal/ubuntu resolute/main s390x python3-all s390x 3.13.9-3 [890 B] 101s Get:43 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-annotated-types all 0.7.0-1 [19.4 kB] 101s Get:44 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-bibtexparser all 2.0.0b5+really1.4.3-1build1 [34.8 kB] 101s Get:45 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-brotli s390x 1.1.0-2build6 [386 kB] 101s Get:46 http://ftpmaster.internal/ubuntu resolute/main s390x python3-bson all 4.16.0-1 [44.8 kB] 101s Get:47 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-contourpy s390x 1.3.3-1 [266 kB] 101s Get:48 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pytz all 2025.2-5 [32.4 kB] 101s Get:49 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pandas-lib s390x 2.3.3+dfsg-3 [7599 kB] 101s Get:50 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pandas all 2.3.3+dfsg-3 [2948 kB] 101s Get:51 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pydantic-core s390x 2.41.5-2 [2593 kB] 101s Get:52 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-typing-inspection all 0.4.2-1 [13.1 kB] 101s Get:53 http://ftpmaster.internal/ubuntu resolute/main s390x python3-dnspython all 2.7.0-1ubuntu2 [167 kB] 101s Get:54 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-email-validator all 2.2.0-1 [28.5 kB] 101s Get:55 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pydantic s390x 2.12.5-2 [312 kB] 101s Get:56 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-tqdm all 4.67.1-7 [93.3 kB] 101s Get:57 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-ruamel.yaml.clib s390x 0.2.15+ds-1 [214 kB] 101s Get:58 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-ruamel.yaml all 0.18.10+ds-1 [127 kB] 101s Get:59 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-monty all 2025.3.3-1 [40.4 kB] 101s Get:60 http://ftpmaster.internal/ubuntu resolute/main s390x python3-psutil s390x 7.1.0-1ubuntu1 [191 kB] 101s Get:61 http://ftpmaster.internal/ubuntu resolute/main s390x libopenjp2-7 s390x 2.5.4-1 [208 kB] 101s Get:62 http://ftpmaster.internal/ubuntu resolute/main s390x python3-pil s390x 12.0.0-1ubuntu1 [540 kB] 101s Get:63 http://ftpmaster.internal/ubuntu resolute/main s390x python3.13-tk s390x 3.13.11-1 [109 kB] 101s Get:64 http://ftpmaster.internal/ubuntu resolute/main s390x python3.14-tk s390x 3.14.2-1 [110 kB] 101s Get:65 http://ftpmaster.internal/ubuntu resolute/main s390x python3-tk s390x 3.13.9-3 [11.2 kB] 101s Get:66 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pil.imagetk s390x 12.0.0-1ubuntu1 [9884 B] 101s Get:67 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-cycler all 0.12.1-2 [9850 B] 101s Get:68 http://ftpmaster.internal/ubuntu resolute/main s390x python3-lxml s390x 6.0.2-1 [2478 kB] 101s Get:69 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-lz4 s390x 4.4.5+dfsg-1 [27.5 kB] 101s Get:70 http://ftpmaster.internal/ubuntu resolute/main s390x python3-decorator all 5.2.1-2 [28.1 kB] 101s Get:71 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-scipy s390x 1.16.3-4 [19.7 MB] 102s Get:72 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-mpmath all 1.3.0-2 [423 kB] 102s Get:73 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-sympy all 1.14.0-2 [4306 kB] 103s Get:74 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-ufolib2 all 0.18.1+dfsg1-1 [33.7 kB] 103s Get:75 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-zopfli s390x 0.4.0-1 [11.2 kB] 103s Get:76 http://ftpmaster.internal/ubuntu resolute/universe s390x unicode-data all 16.0.0-1build1 [9543 kB] 103s Get:77 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-fonttools s390x 4.61.1-3 [1788 kB] 103s Get:78 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-kiwisolver s390x 1.4.10~rc0-1 [65.0 kB] 103s Get:79 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-matplotlib s390x 3.10.7+dfsg1-1 [17.2 MB] 103s Get:80 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-sentry-sdk all 2.22.0-1 [199 kB] 103s Get:81 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-custodian all 2024.10.16-1 [90.9 kB] 103s Get:82 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-fastjsonschema all 2.21.1-1 [20.4 kB] 103s Get:83 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-iniconfig all 2.1.0-2 [6962 B] 103s Get:84 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-joblib all 1.5.2-1 [210 kB] 103s Get:85 http://ftpmaster.internal/ubuntu resolute/main s390x python3-platformdirs all 4.5.1-1 [17.1 kB] 103s Get:86 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-traitlets all 5.14.3+really5.14.3-2 [71.7 kB] 103s Get:87 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-jupyter-core all 5.9.1-1 [28.9 kB] 103s Get:88 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-nbformat all 5.10.4-1 [39.2 kB] 103s Get:89 http://ftpmaster.internal/ubuntu resolute/main s390x python3-networkx all 3.2.1-4ubuntu2 [11.8 MB] 103s Get:90 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-orjson s390x 3.11.5-1 [292 kB] 103s Get:91 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-palettable all 3.3.3-3 [72.6 kB] 103s Get:92 http://ftpmaster.internal/ubuntu resolute/main s390x python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB] 103s Get:93 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-plotly all 5.20.0+dfsg-1.1 [2766 kB] 103s Get:94 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pluggy all 1.6.0-2 [21.1 kB] 103s Get:95 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-spglib s390x 2.7.0-1 [181 kB] 103s Get:96 http://ftpmaster.internal/ubuntu resolute/main s390x python3-tabulate all 0.9.0-1build1 [45.4 kB] 103s Get:97 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-uncertainties all 3.2.3-4 [51.8 kB] 103s Get:98 http://ftpmaster.internal/ubuntu resolute-proposed/universe s390x python3-pymatgen s390x 2025.10.7+dfsg1-1ubuntu1 [2692 kB] 103s Get:99 http://ftpmaster.internal/ubuntu resolute/universe s390x python3-pytest all 9.0.2-2 [277 kB] 104s Fetched 116 MB in 5s (24.9 MB/s) 104s Selecting previously unselected package python3-numpy-dev:s390x. 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61954 files and directories currently installed.) 104s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.5+ds-3_s390x.deb ... 104s Unpacking python3-numpy-dev:s390x (1:2.3.5+ds-3) ... 104s Selecting previously unselected package libblas3:s390x. 104s Preparing to unpack .../01-libblas3_3.12.1-7ubuntu1_s390x.deb ... 104s Unpacking libblas3:s390x (3.12.1-7ubuntu1) ... 104s Selecting previously unselected package libgfortran5:s390x. 104s Preparing to unpack .../02-libgfortran5_15.2.0-12ubuntu1_s390x.deb ... 104s Unpacking libgfortran5:s390x (15.2.0-12ubuntu1) ... 105s Selecting previously unselected package liblapack3:s390x. 105s Preparing to unpack .../03-liblapack3_3.12.1-7ubuntu1_s390x.deb ... 105s Unpacking liblapack3:s390x (3.12.1-7ubuntu1) ... 105s Selecting previously unselected package python3-numpy. 105s Preparing to unpack .../04-python3-numpy_1%3a2.3.5+ds-3_s390x.deb ... 105s Unpacking python3-numpy (1:2.3.5+ds-3) ... 105s Selecting previously unselected package libpython3.14-minimal:s390x. 105s Preparing to unpack .../05-libpython3.14-minimal_3.14.2-1_s390x.deb ... 105s Unpacking libpython3.14-minimal:s390x (3.14.2-1) ... 105s Selecting previously unselected package python3.14-minimal. 105s Preparing to unpack .../06-python3.14-minimal_3.14.2-1_s390x.deb ... 105s Unpacking python3.14-minimal (3.14.2-1) ... 105s Selecting previously unselected package fonts-dejavu-mono. 105s Preparing to unpack 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libfreetype6:s390x (2.14.1+dfsg-2) ... 106s Selecting previously unselected package libfontconfig1:s390x. 106s Preparing to unpack .../13-libfontconfig1_2.17.1-3ubuntu1_s390x.deb ... 106s Unpacking libfontconfig1:s390x (2.17.1-3ubuntu1) ... 106s Selecting previously unselected package libgomp1:s390x. 106s Preparing to unpack .../14-libgomp1_15.2.0-12ubuntu1_s390x.deb ... 106s Unpacking libgomp1:s390x (15.2.0-12ubuntu1) ... 106s Selecting previously unselected package libgraphite2-3:s390x. 106s Preparing to unpack .../15-libgraphite2-3_1.3.14-11ubuntu1_s390x.deb ... 106s Unpacking libgraphite2-3:s390x (1.3.14-11ubuntu1) ... 106s Selecting previously unselected package libharfbuzz0b:s390x. 106s Preparing to unpack .../16-libharfbuzz0b_12.3.2-1_s390x.deb ... 106s Unpacking libharfbuzz0b:s390x (12.3.2-1) ... 106s Selecting previously unselected package libimagequant0:s390x. 106s Preparing to unpack .../17-libimagequant0_2.18.0-1build1_s390x.deb ... 106s Unpacking libimagequant0:s390x 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package libraqm0:s390x. 106s Preparing to unpack .../23-libraqm0_0.10.3-1_s390x.deb ... 106s Unpacking libraqm0:s390x (0.10.3-1) ... 106s Selecting previously unselected package libsharpyuv0:s390x. 106s Preparing to unpack .../24-libsharpyuv0_1.5.0-0.1build1_s390x.deb ... 106s Unpacking libsharpyuv0:s390x (1.5.0-0.1build1) ... 106s Selecting previously unselected package libsymspg2:s390x. 106s Preparing to unpack .../25-libsymspg2_2.7.0-1_s390x.deb ... 106s Unpacking libsymspg2:s390x (2.7.0-1) ... 106s Selecting previously unselected package libtcl8.6:s390x. 106s Preparing to unpack .../26-libtcl8.6_8.6.17+dfsg-1build1_s390x.deb ... 106s Unpacking libtcl8.6:s390x (8.6.17+dfsg-1build1) ... 106s Selecting previously unselected package libjbig0:s390x. 106s Preparing to unpack .../27-libjbig0_2.1-6.1ubuntu3_s390x.deb ... 106s Unpacking libjbig0:s390x (2.1-6.1ubuntu3) ... 106s Selecting previously unselected package libwebp7:s390x. 106s Preparing to unpack .../28-libwebp7_1.5.0-0.1build1_s390x.deb ... 106s Unpacking libwebp7:s390x (1.5.0-0.1build1) ... 106s Selecting previously unselected package libtiff6:s390x. 106s Preparing to unpack .../29-libtiff6_4.7.0-3ubuntu3_s390x.deb ... 106s Unpacking libtiff6:s390x (4.7.0-3ubuntu3) ... 106s Selecting previously unselected package libxrender1:s390x. 106s Preparing to unpack .../30-libxrender1_1%3a0.9.12-1_s390x.deb ... 106s Unpacking libxrender1:s390x (1:0.9.12-1) ... 106s Selecting previously unselected package libxft2:s390x. 106s Preparing to unpack .../31-libxft2_2.3.6-1build2_s390x.deb ... 106s Unpacking libxft2:s390x (2.3.6-1build2) ... 106s Selecting previously unselected package x11-common. 106s Preparing to unpack .../32-x11-common_1%3a7.7+24ubuntu1_all.deb ... 106s Unpacking x11-common (1:7.7+24ubuntu1) ... 106s Selecting previously unselected package libxss1:s390x. 106s Preparing to unpack .../33-libxss1_1%3a1.2.3-1build4_s390x.deb ... 106s Unpacking libxss1:s390x (1:1.2.3-1build4) ... 107s Selecting previously unselected package libtk8.6:s390x. 107s Preparing to unpack .../34-libtk8.6_8.6.17-1_s390x.deb ... 107s Unpacking libtk8.6:s390x (8.6.17-1) ... 107s Selecting previously unselected package libwebpdemux2:s390x. 107s Preparing to unpack .../35-libwebpdemux2_1.5.0-0.1build1_s390x.deb ... 107s Unpacking libwebpdemux2:s390x (1.5.0-0.1build1) ... 107s Selecting previously unselected package libwebpmux3:s390x. 107s Preparing to unpack .../36-libwebpmux3_1.5.0-0.1build1_s390x.deb ... 107s Unpacking libwebpmux3:s390x (1.5.0-0.1build1) ... 107s Selecting previously unselected package libxslt1.1:s390x. 107s Preparing to unpack .../37-libxslt1.1_1.1.43-0.3_s390x.deb ... 107s Unpacking libxslt1.1:s390x (1.1.43-0.3) ... 107s Selecting previously unselected package libzopfli1. 107s Preparing to unpack .../38-libzopfli1_1.0.3-3build1_s390x.deb ... 107s Unpacking libzopfli1 (1.0.3-3build1) ... 107s Selecting previously unselected package python-matplotlib-data. 107s 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(2.3.3+dfsg-3) ... 108s Selecting previously unselected package python3-pydantic-core. 108s Preparing to unpack .../50-python3-pydantic-core_2.41.5-2_s390x.deb ... 108s Unpacking python3-pydantic-core (2.41.5-2) ... 109s Selecting previously unselected package python3-typing-inspection. 109s Preparing to unpack .../51-python3-typing-inspection_0.4.2-1_all.deb ... 109s Unpacking python3-typing-inspection (0.4.2-1) ... 109s Selecting previously unselected package python3-dnspython. 109s Preparing to unpack .../52-python3-dnspython_2.7.0-1ubuntu2_all.deb ... 109s Unpacking python3-dnspython (2.7.0-1ubuntu2) ... 109s Selecting previously unselected package python3-email-validator. 109s Preparing to unpack .../53-python3-email-validator_2.2.0-1_all.deb ... 109s Unpacking python3-email-validator (2.2.0-1) ... 109s Selecting previously unselected package python3-pydantic. 109s Preparing to unpack .../54-python3-pydantic_2.12.5-2_s390x.deb ... 109s Unpacking python3-pydantic (2.12.5-2) ... 109s Selecting previously unselected package python3-tqdm. 109s Preparing to unpack .../55-python3-tqdm_4.67.1-7_all.deb ... 109s Unpacking python3-tqdm (4.67.1-7) ... 109s Selecting previously unselected package python3-ruamel.yaml.clib. 109s Preparing to unpack .../56-python3-ruamel.yaml.clib_0.2.15+ds-1_s390x.deb ... 109s Unpacking python3-ruamel.yaml.clib (0.2.15+ds-1) ... 109s Selecting previously unselected package python3-ruamel.yaml. 109s Preparing to unpack .../57-python3-ruamel.yaml_0.18.10+ds-1_all.deb ... 109s Unpacking python3-ruamel.yaml (0.18.10+ds-1) ... 109s Selecting previously unselected package python3-monty. 109s Preparing to unpack .../58-python3-monty_2025.3.3-1_all.deb ... 109s Unpacking python3-monty (2025.3.3-1) ... 109s Selecting previously unselected package python3-psutil. 109s Preparing to unpack .../59-python3-psutil_7.1.0-1ubuntu1_s390x.deb ... 109s Unpacking python3-psutil (7.1.0-1ubuntu1) ... 109s Selecting previously unselected package libopenjp2-7:s390x. 109s Preparing to unpack .../60-libopenjp2-7_2.5.4-1_s390x.deb ... 109s Unpacking libopenjp2-7:s390x (2.5.4-1) ... 109s Selecting previously unselected package python3-pil:s390x. 109s Preparing to unpack .../61-python3-pil_12.0.0-1ubuntu1_s390x.deb ... 109s Unpacking python3-pil:s390x (12.0.0-1ubuntu1) ... 109s Selecting previously unselected package python3.13-tk. 109s Preparing to unpack .../62-python3.13-tk_3.13.11-1_s390x.deb ... 109s Unpacking python3.13-tk (3.13.11-1) ... 109s Selecting previously unselected package python3.14-tk. 109s Preparing to unpack .../63-python3.14-tk_3.14.2-1_s390x.deb ... 109s Unpacking python3.14-tk (3.14.2-1) ... 109s Selecting previously unselected package python3-tk. 109s Preparing to unpack .../64-python3-tk_3.13.9-3_s390x.deb ... 109s Unpacking python3-tk (3.13.9-3) ... 109s Selecting previously unselected package python3-pil.imagetk:s390x. 109s Preparing to unpack .../65-python3-pil.imagetk_12.0.0-1ubuntu1_s390x.deb ... 109s 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python3-mpmath. 111s Preparing to unpack .../71-python3-mpmath_1.3.0-2_all.deb ... 111s Unpacking python3-mpmath (1.3.0-2) ... 111s Selecting previously unselected package python3-sympy. 111s Preparing to unpack .../72-python3-sympy_1.14.0-2_all.deb ... 111s Unpacking python3-sympy (1.14.0-2) ... 111s Selecting previously unselected package python3-ufolib2. 111s Preparing to unpack .../73-python3-ufolib2_0.18.1+dfsg1-1_all.deb ... 111s Unpacking python3-ufolib2 (0.18.1+dfsg1-1) ... 111s Selecting previously unselected package python3-zopfli. 111s Preparing to unpack .../74-python3-zopfli_0.4.0-1_s390x.deb ... 111s Unpacking python3-zopfli (0.4.0-1) ... 111s Selecting previously unselected package unicode-data. 111s Preparing to unpack .../75-unicode-data_16.0.0-1build1_all.deb ... 111s Unpacking unicode-data (16.0.0-1build1) ... 111s Selecting previously unselected package python3-fonttools. 111s Preparing to unpack .../76-python3-fonttools_4.61.1-3_s390x.deb ... 111s Unpacking python3-fonttools (4.61.1-3) ... 111s Selecting previously unselected package python3-kiwisolver. 111s Preparing to unpack .../77-python3-kiwisolver_1.4.10~rc0-1_s390x.deb ... 111s Unpacking python3-kiwisolver (1.4.10~rc0-1) ... 111s Selecting previously unselected package python3-matplotlib. 111s Preparing to unpack .../78-python3-matplotlib_3.10.7+dfsg1-1_s390x.deb ... 111s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 113s Selecting previously unselected package python3-sentry-sdk. 113s Preparing to unpack .../79-python3-sentry-sdk_2.22.0-1_all.deb ... 113s Unpacking python3-sentry-sdk (2.22.0-1) ... 113s Selecting previously unselected package python3-custodian. 113s Preparing to unpack .../80-python3-custodian_2024.10.16-1_all.deb ... 113s Unpacking python3-custodian (2024.10.16-1) ... 113s Selecting previously unselected package python3-fastjsonschema. 113s Preparing to unpack .../81-python3-fastjsonschema_2.21.1-1_all.deb ... 113s Unpacking python3-fastjsonschema (2.21.1-1) ... 113s Selecting previously unselected package python3-iniconfig. 113s Preparing to unpack .../82-python3-iniconfig_2.1.0-2_all.deb ... 113s Unpacking python3-iniconfig (2.1.0-2) ... 113s Selecting previously unselected package python3-joblib. 113s Preparing to unpack .../83-python3-joblib_1.5.2-1_all.deb ... 113s Unpacking python3-joblib (1.5.2-1) ... 113s Selecting previously unselected package python3-platformdirs. 113s Preparing to unpack .../84-python3-platformdirs_4.5.1-1_all.deb ... 113s Unpacking python3-platformdirs (4.5.1-1) ... 113s Selecting previously unselected package python3-traitlets. 113s Preparing to unpack .../85-python3-traitlets_5.14.3+really5.14.3-2_all.deb ... 113s Unpacking python3-traitlets (5.14.3+really5.14.3-2) ... 113s Selecting previously unselected package python3-jupyter-core. 113s Preparing to unpack .../86-python3-jupyter-core_5.9.1-1_all.deb ... 113s Unpacking python3-jupyter-core (5.9.1-1) ... 113s Selecting previously unselected package python3-nbformat. 113s Preparing to unpack .../87-python3-nbformat_5.10.4-1_all.deb ... 113s Unpacking python3-nbformat (5.10.4-1) ... 113s Selecting previously unselected package python3-networkx. 113s Preparing to unpack .../88-python3-networkx_3.2.1-4ubuntu2_all.deb ... 113s Unpacking python3-networkx (3.2.1-4ubuntu2) ... 115s Selecting previously unselected package python3-orjson. 115s Preparing to unpack .../89-python3-orjson_3.11.5-1_s390x.deb ... 115s Unpacking python3-orjson (3.11.5-1) ... 115s Selecting previously unselected package python3-palettable. 115s Preparing to unpack .../90-python3-palettable_3.3.3-3_all.deb ... 115s Unpacking python3-palettable (3.3.3-3) ... 115s Selecting previously unselected package python3-tenacity. 115s Preparing to unpack .../91-python3-tenacity_9.0.0-0ubuntu1_all.deb ... 115s Unpacking python3-tenacity (9.0.0-0ubuntu1) ... 115s Selecting previously unselected package python3-plotly. 115s Preparing to unpack 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PASSED [ 77%] 477s tests/vasp/test_handlers.py::ZpotrfErrorHandlerTest::test_static_run_correction PASSED [ 78%] 477s tests/vasp/test_handlers.py::ZpotrfErrorHandlerSmallTest::test_small PASSED [ 79%] 478s tests/vasp/test_handlers.py::WalltimeHandlerTest::test_check_and_correct PASSED [ 79%] 478s tests/vasp/test_handlers.py::WalltimeHandlerTest::test_walltime_start PASSED [ 80%] 478s tests/vasp/test_handlers.py::PositiveEnergyHandlerTest::test_check_correct PASSED [ 80%] 478s tests/vasp/test_handlers.py::PotimHandlerTest::test_check_correct PASSED [ 81%] 483s tests/vasp/test_handlers.py::LrfCommHandlerTest::test_lrf_comm PASSED [ 82%] 483s tests/vasp/test_handlers.py::KpointsTransHandlerTest::test_kpoints_trans PASSED [ 82%] 483s tests/vasp/test_handlers.py::OutOfMemoryHandlerTest::test_oom PASSED [ 83%] 483s tests/vasp/test_handlers.py::DriftErrorHandlerTest::test_check PASSED [ 83%] 484s tests/vasp/test_handlers.py::DriftErrorHandlerTest::test_correct PASSED [ 84%] 484s tests/vasp/test_handlers.py::NonConvergingErrorHandlerTest::test_as_from_dict PASSED [ 85%] 484s tests/vasp/test_handlers.py::NonConvergingErrorHandlerTest::test_check PASSED [ 85%] 484s tests/vasp/test_handlers.py::NonConvergingErrorHandlerTest::test_correct PASSED [ 86%] 484s tests/vasp/test_io.py::TestIO::test_load_outcar PASSED [ 87%] 484s tests/vasp/test_io.py::TestIO::test_load_vasprun PASSED [ 87%] 484s tests/vasp/test_jobs.py::TestVaspJob::test_as_from_dict PASSED [ 88%] 485s tests/vasp/test_jobs.py::TestVaspJob::test_setup PASSED [ 88%] 485s tests/vasp/test_jobs.py::TestVaspJob::test_setup_run_no_kpts PASSED [ 89%] 491s tests/vasp/test_jobs.py::TestVaspJob::test_update_incar PASSED [ 90%] 492s tests/vasp/test_jobs.py::TestVaspJob::test_postprocess PASSED [ 90%] 495s tests/vasp/test_jobs.py::TestVaspJob::test_continue PASSED [ 91%] 495s tests/vasp/test_jobs.py::TestVaspJob::test_static PASSED [ 91%] 495s tests/vasp/test_jobs.py::TestVaspNEBJob::test_as_from_dict PASSED [ 92%] 495s tests/vasp/test_jobs.py::TestVaspNEBJob::test_setup PASSED [ 93%] 495s tests/vasp/test_jobs.py::TestVaspNEBJob::test_postprocess PASSED [ 93%] 495s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run PASSED [ 94%] 495s tests/vasp/test_utils.py::TestKPointUtils::test_k_point_estimate PASSED [ 95%] 496s tests/vasp/test_utils.py::TestKPointUtils::test_kpoint_density_increase PASSED [ 95%] 497s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_check_and_correct PASSED [ 96%] 497s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_as_dict PASSED [ 96%] 497s tests/vasp/test_validators.py::TestVaspFilesValidator::test_check_and_correct PASSED [ 97%] 497s tests/vasp/test_validators.py::TestVaspFilesValidator::test_as_dict PASSED [ 98%] 497s tests/vasp/test_validators.py::TestVaspNpTMDValidator::test_check_and_correct PASSED [ 98%] 497s tests/vasp/test_validators.py::TestVaspNpTMDValidator::test_as_dict PASSED [ 99%] 501s tests/vasp/test_validators.py::TestVaspAECCARValidator::test_check_and_correct PASSED [100%] 501s 501s =============================== warnings summary =============================== 501s ../../../../usr/lib/python3/dist-packages/pyparsing/core.py:5637 501s /usr/lib/python3/dist-packages/pyparsing/core.py:5637: SyntaxWarning: 'return' in a 'finally' block 501s return f"{type(self).__name__}: {retString}" 501s 501s ../../../../usr/lib/python3/dist-packages/_pytest/unittest.py:89 501s /usr/lib/python3/dist-packages/_pytest/unittest.py:89: FutureWarning: PymatgenTest is deprecated, and will be removed on 2026-01-01 501s Use MatSciTest in pymatgen.util.testing instead. 501s return self.obj("runTest") 501s 501s ../../../../usr/lib/python3/dist-packages/_pytest/unittest.py:216 501s /usr/lib/python3/dist-packages/_pytest/unittest.py:216: FutureWarning: PymatgenTest is deprecated, and will be removed on 2026-01-01 501s Use MatSciTest in pymatgen.util.testing instead. 501s return self.parent.obj(self.name) 501s 501s tests/feff/test_handlers.py::UnconvergedErrorHandlerTest::test_check_unconverged 501s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_dentet 501s tests/vasp/test_utils.py::TestKPointUtils::test_kpoint_density_increase 501s tests/vasp/test_utils.py::TestKPointUtils::test_kpoint_density_increase 501s /usr/lib/python3/dist-packages/spglib/spg.py:438: DeprecationWarning: Set OLD_ERROR_HANDLING to false and catch the errors directly. 501s _set_no_error(_throw) 501s 501s tests/feff/test_jobs.py::test_setup 501s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/feff_unconverged/tmpoifx5jf8 to itself 501s warnings.warn(f"Cannot copy {fpath} to itself") 501s 501s tests/feff/test_jobs.py::test_postprocess 501s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/feff_unconverged/tmpw9nks6za to itself 501s warnings.warn(f"Cannot copy {fpath} to itself") 501s 501s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_bad_file 501s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 501s ./bad_file.out: Termination error or bad Gaussian output file ! 501s self._parse(self.filename) 501s 501s tests/gaussian/test_handlers.py: 19 warnings 501s /usr/lib/python3/dist-packages/custodian/gaussian/handlers.py:490: FutureWarning: We strongly discourage using a default `mode`, it would be set to `r` now but would not be allowed after 2025-06-01 501s with zopen(os.path.join(directory, self.output_file)) as f: 501s 501s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_blank_line 501s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 501s ./zmatrix.out: Termination error or bad Gaussian output file ! 501s self._parse(self.filename) 501s 501s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_coord_inputs 501s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 501s ./coord_inputs.out: Termination error or bad Gaussian output file ! 501s self._parse(self.filename) 501s 501s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_coords_dict_geom 501s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 501s ./coords_dict_geom.out: Termination error or bad Gaussian output file ! 501s self._parse(self.filename) 501s 501s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_coords_string_geom 501s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 501s ./coords_string_geom.out: Termination error or bad Gaussian output file ! 501s self._parse(self.filename) 501s 501s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_found_coords 501s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 501s ./found_coords.out: Termination error or bad Gaussian output file ! 501s self._parse(self.filename) 501s 501s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_insufficient_memory 501s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 501s ./insufficient_memory.out: Termination error or bad Gaussian output file ! 501s self._parse(self.filename) 501s 501s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_linear_bend 501s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 501s ./linear_bend.out: Termination error or bad Gaussian output file ! 501s self._parse(self.filename) 501s 501s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_missing_file 501s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 501s ./missing_file.out: Termination error or bad Gaussian output file ! 501s self._parse(self.filename) 501s 501s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_missing_mol 501s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 501s ./missing_mol.out: Termination error or bad Gaussian output file ! 501s self._parse(self.filename) 501s 501s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_better_guess 501s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 501s ./opt_steps_better_guess.out: Termination error or bad Gaussian output file ! 501s self._parse(self.filename) 501s 501s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_cycles 501s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 501s ./opt_steps_cycles.out: Termination error or bad Gaussian output file ! 501s self._parse(self.filename) 501s 501s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_from_structure 501s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 501s ./opt_steps_from_structure.out: Termination error or bad Gaussian output file ! 501s self._parse(self.filename) 501s 501s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_int_grid 501s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 501s ./opt_steps_int_grid.out: Termination error or bad Gaussian output file ! 501s self._parse(self.filename) 501s 501s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_scf_convergence_algorithm 501s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 501s ./scf_convergence_algorithm.out: Termination error or bad Gaussian output file ! 501s self._parse(self.filename) 501s 501s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_scf_convergence_better_guess 501s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 501s ./scf_convergence_better_guess.out: Termination error or bad Gaussian output file ! 501s self._parse(self.filename) 501s 501s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_scf_convergence_cycles 501s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 501s ./scf_convergence_cycles.out: Termination error or bad Gaussian output file ! 501s self._parse(self.filename) 501s 501s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_solute_solvent_surface 501s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 501s ./solute_solvent_surface.out: Termination error or bad Gaussian output file ! 501s self._parse(self.filename) 501s 501s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_syntax 501s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 501s ./syntax.out: Termination error or bad Gaussian output file ! 501s self._parse(self.filename) 501s 501s tests/lobster/test_jobs.py::TestLobsterJob::test_setup 501s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/lobster/lobsterins/tmpa04ts0hc to itself 501s warnings.warn(f"Cannot copy {fpath} to itself") 501s 501s tests/lobster/test_jobs.py::TestLobsterJob::test_setup 501s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/lobster/lobsterins/tmpp06b3xti to itself 501s warnings.warn(f"Cannot copy {fpath} to itself") 501s 501s tests/lobster/test_jobs.py::TestLobsterJob::test_postprocess 501s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/lobster/vasp_lobster_output/tmpk_o6fvms to itself 501s warnings.warn(f"Cannot copy {fpath} to itself") 501s 501s tests/lobster/test_jobs.py::TestLobsterJob::test_postprocess 501s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/lobster/vasp_lobster_output/tmp4ttnq2yp to itself 501s warnings.warn(f"Cannot copy {fpath} to itself") 501s 501s tests/test_custodian.py::CustodianTest::test_exitcode_error 501s /usr/lib/python3/dist-packages/custodian/custodian.py:520: UserWarning: subprocess returned a non-zero return code. Check outputs carefully... 501s warnings.warn("subprocess returned a non-zero return code. Check outputs carefully...") 501s 501s tests/vasp/test_handlers.py: 50 warnings 501s tests/vasp/test_jobs.py: 1 warning 501s tests/vasp/test_validators.py: 1 warning 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2973: UnknownPotcarWarning: POTCAR data with symbol Na is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 501s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 501s 501s tests/vasp/test_handlers.py: 50 warnings 501s tests/vasp/test_jobs.py: 2 warnings 501s tests/vasp/test_validators.py: 1 warning 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2973: UnknownPotcarWarning: POTCAR data with symbol Fe is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 501s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 501s 501s tests/vasp/test_handlers.py: 50 warnings 501s tests/vasp/test_jobs.py: 1 warning 501s tests/vasp/test_validators.py: 1 warning 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2973: UnknownPotcarWarning: POTCAR data with symbol Ni is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 501s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 501s 501s tests/vasp/test_handlers.py: 50 warnings 501s tests/vasp/test_jobs.py: 2 warnings 501s tests/vasp/test_validators.py: 1 warning 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2973: UnknownPotcarWarning: POTCAR data with symbol O is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 501s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 501s 501s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_dentet 501s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_large_kspacing 501s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:251: UserWarning: Your specified k-point density was too low to use with the tetrahedron method. The k-point density has been increased, please check that your results are not impacted by this change. 501s warnings.warn( 501s 501s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_dentet 501s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:261: UserWarning: Your specified k-point density was too low to use with the tetrahedron method. The smearing method has been changed to Gaussian, please check that your results are not impacted by this change. 501s warnings.warn( 501s 501s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_eddiag 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:314: UserWarning: Elements in POSCAR would be overwritten by default_names=['Na', 'Fe', 'Ni', 'O'] 501s return cls.from_str(file.read(), names, read_velocities=read_velocities) # type:ignore[arg-type] 501s 501s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_gradient_not_orthogonal 501s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:587: UserWarning: EDWAV error reported by VASP without a simultaneous algo_tet error. You may wish to consider recompiling VASP with the -O1 optimization if you used -O2 and this error keeps cropping up. 501s warnings.warn( 501s 501s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_nbands_not_sufficient 501s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:677: UserWarning: Double-check your INCAR. Something is potentially wrong. 501s warnings.warn("Double-check your INCAR. Something is potentially wrong.", UserWarning) 501s 501s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_read_error 501s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:689: UserWarning: Looks like you made a typo in the INCAR. Please double-check it. 501s warnings.warn("Looks like you made a typo in the INCAR. Please double-check it.", UserWarning) 501s 501s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_set_core_wf 501s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:682: UserWarning: We suggest using a new version of the POTCAR files to resolve the SET_CORE_WF error. 501s warnings.warn( 501s 501s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_few_bands 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2973: UnknownPotcarWarning: POTCAR data with symbol Eu is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 501s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 501s 501s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_few_bands 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2973: UnknownPotcarWarning: POTCAR data with symbol In_d is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 501s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 501s 501s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_few_bands 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2973: UnknownPotcarWarning: POTCAR data with symbol Rh_pv is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 501s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 501s 501s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_amin 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 501s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_amin1/POTCAR 501s if potcar := self.get_potcars(path): 501s 501s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_amin 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 501s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_amin1/POTCAR 501s potcar = self.get_potcars(path) 501s 501s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_amin 501s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic 501s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic_repeat 501s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_scan 501s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_correct_normal_with_condition 501s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_psmaxn 501s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_uncorrectable 501s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_check_and_correct 501s /usr/lib/python3/dist-packages/custodian/vasp/io.py:21: UnconvergedVASPWarning: ./vasprun.xml is an unconverged VASP run. 501s Electronic convergence reached: False. 501s Ionic convergence reached: True. 501s return Vasprun(filepath, **vasprun_kwargs) 501s 501s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 501s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_electronic0/POTCAR 501s if potcar := self.get_potcars(path): 501s 501s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 501s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_electronic0/POTCAR 501s potcar = self.get_potcars(path) 501s 501s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic_repeat 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 501s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_electronic_0/POTCAR 501s if potcar := self.get_potcars(path): 501s 501s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic_repeat 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 501s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_electronic_0/POTCAR 501s potcar = self.get_potcars(path) 501s 501s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_ionic 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 501s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_ionic0/POTCAR 501s if potcar := self.get_potcars(path): 501s 501s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_ionic 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 501s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_ionic0/POTCAR 501s potcar = self.get_potcars(path) 501s 501s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_ionic 501s /usr/lib/python3/dist-packages/custodian/vasp/io.py:21: UnconvergedVASPWarning: ./vasprun.xml is an unconverged VASP run. 501s Electronic convergence reached: True. 501s Ionic convergence reached: False. 501s return Vasprun(filepath, **vasprun_kwargs) 501s 501s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_scan 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 501s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_scan0/POTCAR 501s if potcar := self.get_potcars(path): 501s 501s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_scan 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 501s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_scan0/POTCAR 501s potcar = self.get_potcars(path) 501s 501s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_correct_normal_with_condition 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 501s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_correct_normal_with_condi0/POTCAR 501s if potcar := self.get_potcars(path): 501s 501s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_correct_normal_with_condition 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 501s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_correct_normal_with_condi0/POTCAR 501s potcar = self.get_potcars(path) 501s 501s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_psmaxn 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 501s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_psmaxn0/POTCAR 501s if potcar := self.get_potcars(path): 501s 501s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_psmaxn 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 501s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_psmaxn0/POTCAR 501s potcar = self.get_potcars(path) 501s 501s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_uncorrectable 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 501s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_uncorrectable0/POTCAR 501s if potcar := self.get_potcars(path): 501s 501s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_uncorrectable 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 501s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_uncorrectable0/POTCAR 501s potcar = self.get_potcars(path) 501s 501s tests/vasp/test_handlers.py::IncorrectSmearingHandlerTest::test_check_correct_scan_metal 501s tests/vasp/test_handlers.py::IncorrectSmearingHandlerStaticTest::test_check_correct_scan_metal 501s tests/vasp/test_handlers.py::IncorrectSmearingHandlerFermiTest::test_check_correct_scan_metal 501s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_correct_scan_metal 501s tests/vasp/test_io.py::TestIO::test_load_vasprun 501s tests/vasp/test_jobs.py::TestVaspJob::test_update_incar 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 501s 501s if potcar := self.get_potcars(path): 501s 501s tests/vasp/test_handlers.py::IncorrectSmearingHandlerTest::test_check_correct_scan_metal 501s tests/vasp/test_handlers.py::IncorrectSmearingHandlerStaticTest::test_check_correct_scan_metal 501s tests/vasp/test_handlers.py::IncorrectSmearingHandlerFermiTest::test_check_correct_scan_metal 501s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_correct_scan_metal 501s tests/vasp/test_io.py::TestIO::test_load_vasprun 501s tests/vasp/test_jobs.py::TestVaspJob::test_update_incar 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 501s 501s potcar = self.get_potcars(path) 501s 501s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_with_non_kspacing_wf 501s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/vasp/test_handlers.py:831: FutureWarning: ScanMetalHandler is deprecated; use KspacingMetalHandler in custodian.vasp.handlers instead. 501s ScanMetalHandler was deprecated on 2023-11-03 and will be removed in a future release. Use KspacingMetalHandler instead. 501s assert isinstance(ScanMetalHandler(), KspacingMetalHandler) 501s 501s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_with_non_kspacing_wf 501s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:1350: DeprecationWarning: ScanMetalHandler is deprecated and will be removed in a future release. Use KspacingMetalHandler instead. 501s warnings.warn( 501s 501s tests/vasp/test_handlers.py::NonConvergingErrorHandlerTest::test_correct 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:890: BadIncarWarning: Duplicate keys found (case-insensitive): ['ALGO'] 501s return cls({k: v for k, v in dct.items() if k not in ("@module", "@class")}) 501s 501s tests/vasp/test_jobs.py::TestVaspJob::test_setup 501s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/tmpqydhwlke to itself 501s warnings.warn(f"Cannot copy {fpath} to itself") 501s 501s tests/vasp/test_jobs.py::TestVaspJob::test_setup_run_no_kpts 501s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/kspacing/tmp_o65o85e to itself 501s warnings.warn(f"Cannot copy {fpath} to itself") 501s 501s tests/vasp/test_jobs.py::TestVaspJob::test_update_incar 501s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/update_incar/tmp6xzvdxii to itself 501s warnings.warn(f"Cannot copy {fpath} to itself") 501s 501s tests/vasp/test_jobs.py::TestVaspJob::test_postprocess 501s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/postprocess/tmprigbl33b to itself 501s warnings.warn(f"Cannot copy {fpath} to itself") 501s 501s tests/vasp/test_jobs.py::TestVaspJob::test_continue 501s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/postprocess/tmpg6om29ct to itself 501s warnings.warn(f"Cannot copy {fpath} to itself") 501s 501s tests/vasp/test_jobs.py::TestVaspJob::test_continue 501s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/postprocess/tmp06kl28mp to itself 501s warnings.warn(f"Cannot copy {fpath} to itself") 501s 501s tests/vasp/test_jobs.py::TestVaspNEBJob::test_setup 501s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/setup_neb/tmp2x9z1zo3 to itself 501s warnings.warn(f"Cannot copy {fpath} to itself") 501s 501s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 501s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 501s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 501s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 501s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 501s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 501s /usr/lib/python3/dist-packages/spglib/cell.py:106: DeprecationWarning: Set OLD_ERROR_HANDLING to false and catch the errors directly. 501s _set_no_error() 501s 501s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 501s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 501s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 501s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 501s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 501s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 501s /usr/lib/python3/dist-packages/spglib/spg.py:354: DeprecationWarning: Set OLD_ERROR_HANDLING to false and catch the errors directly. 501s _set_no_error() 501s 501s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 501s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 501s /usr/lib/python3/dist-packages/pymatgen/symmetry/bandstructure.py:179: UserWarning: The input structure does not match the expected standard primitive! The path may be incorrect. Use at your own risk. 501s kpath = KPathSetyawanCurtarolo(self._structure, symprec, angle_tolerance, atol) 501s 501s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2507: UnknownPotcarWarning: POTCAR data with symbol Na_pv is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 501s return cls(file.read(), symbol=symbol or None) # type:ignore[arg-type] 501s 501s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2507: UnknownPotcarWarning: POTCAR data with symbol Fe_pv is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 501s return cls(file.read(), symbol=symbol or None) # type:ignore[arg-type] 501s 501s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2507: UnknownPotcarWarning: POTCAR data with symbol Ni_pv is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 501s return cls(file.read(), symbol=symbol or None) # type:ignore[arg-type] 501s 501s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2507: UnknownPotcarWarning: POTCAR data with symbol O is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 501s return cls(file.read(), symbol=symbol or None) # type:ignore[arg-type] 501s 501s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/sets.py:486: BadInputSetWarning: POTCAR data with symbol Na_pv is not known by pymatgen to correspond with the selected user_potcar_functional='PBE'. This POTCAR is known to correspond with functionals []. Please verify that you are using the right POTCARs! 501s potcar="\n".join(self.potcar_symbols) if potcar_spec else self.potcar, 501s 501s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/sets.py:486: BadInputSetWarning: POTCAR data with symbol Fe_pv is not known by pymatgen to correspond with the selected user_potcar_functional='PBE'. This POTCAR is known to correspond with functionals []. Please verify that you are using the right POTCARs! 501s potcar="\n".join(self.potcar_symbols) if potcar_spec else self.potcar, 501s 501s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/sets.py:486: BadInputSetWarning: POTCAR data with symbol Ni_pv is not known by pymatgen to correspond with the selected user_potcar_functional='PBE'. This POTCAR is known to correspond with functionals []. Please verify that you are using the right POTCARs! 501s potcar="\n".join(self.potcar_symbols) if potcar_spec else self.potcar, 501s 501s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/sets.py:486: BadInputSetWarning: POTCAR data with symbol O is not known by pymatgen to correspond with the selected user_potcar_functional='PBE'. This POTCAR is known to correspond with functionals []. Please verify that you are using the right POTCARs! 501s potcar="\n".join(self.potcar_symbols) if potcar_spec else self.potcar, 501s 501s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_check_and_correct 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 501s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/unconverged/POTCAR 501s if potcar := self.get_potcars(path): 501s 501s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_check_and_correct 501s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 501s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/unconverged/POTCAR 501s potcar = self.get_potcars(path) 501s 501s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 501s =========== 162 passed, 3 skipped, 344 warnings in 200.58s (0:03:20) =========== 505s ============================= test session starts ============================== 505s platform linux -- Python 3.13.11, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3.13 505s cachedir: .pytest_cache 505s rootdir: /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests 505s plugins: typeguard-4.4.4 516s collecting ... collected 162 items / 3 skipped 516s 516s tests/ansible/test_interpreter.py::TestModder::test_dict_modify PASSED [ 0%] 516s tests/ansible/test_interpreter.py::TestModder::test_file_modify PASSED [ 1%] 516s tests/ansible/test_interpreter.py::TestModder::test_strict_mode PASSED [ 1%] 516s tests/ansible/test_interpreter.py::TestModder::test_modify_object PASSED [ 2%] 517s tests/cp2k/test_handlers.py::HandlerTests::test PASSED [ 3%] 518s tests/cp2k/test_handlers.py::HandlerTests::test_abort_handler PASSED [ 3%] 519s tests/cp2k/test_handlers.py::HandlerTests::test_conv PASSED [ 4%] 520s tests/cp2k/test_handlers.py::HandlerTests::test_frozenjobhandler PASSED [ 4%] 521s tests/cp2k/test_handlers.py::HandlerTests::test_handler_inits PASSED [ 5%] 522s tests/cp2k/test_handlers.py::HandlerTests::test_imprecision_handler PASSED [ 6%] 523s tests/cp2k/test_handlers.py::HandlerTests::test_std_out PASSED [ 6%] 524s tests/cp2k/test_handlers.py::HandlerTests::test_unconverged_handler PASSED [ 7%] 524s tests/cp2k/test_jobs.py::HandlerTests::test_double PASSED [ 8%] 524s tests/cp2k/test_jobs.py::HandlerTests::test_job PASSED [ 8%] 525s tests/feff/test_handlers.py::UnconvergedErrorHandlerTest::test_check_unconverged PASSED [ 9%] 525s tests/feff/test_jobs.py::test_as_from_dict PASSED [ 9%] 529s tests/feff/test_jobs.py::test_setup PASSED [ 10%] 529s tests/feff/test_jobs.py::test_postprocess PASSED [ 11%] 529s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_bad_file PASSED [ 11%] 529s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_blank_line PASSED [ 12%] 529s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_coord_inputs PASSED [ 12%] 529s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_coords_dict_geom PASSED [ 13%] 529s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_coords_string_geom PASSED [ 14%] 529s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_found_coords PASSED [ 14%] 529s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_insufficient_memory PASSED [ 15%] 529s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_internal_coords PASSED [ 16%] 539s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_linear_bend PASSED [ 16%] 539s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_missing_file PASSED [ 17%] 539s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_missing_mol PASSED [ 17%] 539s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_better_guess PASSED [ 18%] 539s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_cycles PASSED [ 19%] 541s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_from_structure PASSED [ 19%] 541s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_int_grid PASSED [ 20%] 541s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_scf_convergence_algorithm PASSED [ 20%] 541s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_scf_convergence_better_guess PASSED [ 21%] 541s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_scf_convergence_cycles PASSED [ 22%] 551s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_solute_solvent_surface PASSED [ 22%] 551s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_syntax PASSED [ 23%] 551s tests/gaussian/test_handlers.py::TestWallTimeErrorHandler::test_walltime_check_and_correct PASSED [ 24%] 551s tests/gaussian/test_handlers.py::TestWallTimeErrorHandler::test_walltime_init PASSED [ 24%] 551s tests/gaussian/test_jobs.py::TestGaussianJob::test_better_guess PASSED [ 25%] 551s tests/gaussian/test_jobs.py::TestGaussianJob::test_normal PASSED [ 25%] 551s tests/lobster/test_handlers.py::TestChargeSpillingValidator::test_check_and_correct PASSED [ 26%] 551s tests/lobster/test_handlers.py::TestChargeSpillingValidator::test_as_dict PASSED [ 27%] 551s tests/lobster/test_handlers.py::TestLobsterFilesValidator::test_check_and_correct_1 PASSED [ 27%] 551s tests/lobster/test_handlers.py::TestLobsterFilesValidator::test_check_and_correct_2 PASSED [ 28%] 551s tests/lobster/test_handlers.py::TestLobsterFilesValidator::test_check_and_correct_3 PASSED [ 29%] 551s tests/lobster/test_handlers.py::TestLobsterFilesValidator::test_as_dict PASSED [ 29%] 551s tests/lobster/test_handlers.py::TestEnoughBandsValidator::test_check_and_correct PASSED [ 30%] 551s tests/lobster/test_handlers.py::TestEnoughBandsValidator::test_check_and_correct2 PASSED [ 30%] 551s tests/lobster/test_handlers.py::TestEnoughBandsValidator::test_check_and_correct3 PASSED [ 31%] 551s tests/lobster/test_handlers.py::TestEnoughBandsValidator::test_as_dict PASSED [ 32%] 551s tests/lobster/test_jobs.py::TestLobsterJob::test_as_from_dict PASSED [ 32%] 551s tests/lobster/test_jobs.py::TestLobsterJob::test_setup PASSED [ 33%] 576s tests/lobster/test_jobs.py::TestLobsterJob::test_postprocess PASSED [ 33%] 576s tests/nwchem/test_handlers.py::test_check_correct PASSED [ 34%] 576s tests/test_custodian.py::CustodianTest::test_exitcode_error PASSED [ 35%] 576s tests/test_custodian.py::CustodianTest::test_from_spec PASSED [ 35%] 576s tests/test_custodian.py::CustodianTest::test_max_errors PASSED [ 36%] 576s tests/test_custodian.py::CustodianTest::test_max_errors_per_handler_raise PASSED [ 37%] 578s tests/test_custodian.py::CustodianTest::test_max_errors_per_handler_warning PASSED [ 37%] 578s tests/test_custodian.py::CustodianTest::test_max_errors_per_job PASSED [ 38%] 579s tests/test_custodian.py::CustodianTest::test_run PASSED [ 38%] 581s tests/test_custodian.py::CustodianTest::test_run_interrupted PASSED [ 39%] 581s tests/test_custodian.py::CustodianTest::test_unrecoverable PASSED [ 40%] 582s tests/test_custodian.py::CustodianTest::test_validators PASSED [ 40%] 582s tests/test_utils.py::test_cache_and_clear PASSED [ 41%] 583s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_algotet PASSED [ 41%] 584s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_amin PASSED [ 42%] 585s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_as_from_dict PASSED [ 43%] 585s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_auto_nbands PASSED [ 43%] 586s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_auto_nbands_bad_parallelization PASSED [ 44%] 588s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_bravais PASSED [ 45%] 590s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_brions PASSED [ 45%] 592s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_brmix PASSED [ 46%] 593s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_bzint_vasp6 PASSED [ 46%] 594s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_check_correct PASSED [ 47%] 596s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_coef PASSED [ 48%] 597s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_dentet PASSED [ 48%] 598s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_dfpt_ncore PASSED [ 49%] 601s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_edddav PASSED [ 50%] 602s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_eddiag PASSED [ 50%] 604s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_eddrmm PASSED [ 51%] 605s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_finite_difference_ncore PASSED [ 51%] 605s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_frozen_job PASSED [ 52%] 608s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_gradient_not_orthogonal PASSED [ 53%] 609s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_hnform PASSED [ 53%] 610s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_inv_rot_matrix_vasp6 PASSED [ 54%] 611s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_mesh_symmetry PASSED [ 54%] 612s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_nbands_not_sufficient PASSED [ 55%] 613s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_nicht_konv PASSED [ 56%] 614s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_point_group PASSED [ 56%] 614s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_point_group_vasp6 PASSED [ 57%] 617s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_posmap_and_pricelv PASSED [ 58%] 618s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_pssyevx_pdsyevx PASSED [ 58%] 618s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_read_error PASSED [ 59%] 619s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_rhosyg PASSED [ 59%] 620s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_rhosyg_vasp6 PASSED [ 60%] 620s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_rot_matrix PASSED [ 61%] 621s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_rot_matrix_vasp6 PASSED [ 61%] 622s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_set_core_wf PASSED [ 62%] 624s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_subspace PASSED [ 62%] 624s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_symprec_noise PASSED [ 63%] 631s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_few_bands PASSED [ 64%] 632s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_few_bands_round_error PASSED [ 64%] 632s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_large_kspacing PASSED [ 65%] 635s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_zbrent PASSED [ 66%] 643s tests/vasp/test_handlers.py::AliasingErrorHandlerTest::test_aliasing PASSED [ 66%] 657s tests/vasp/test_handlers.py::AliasingErrorHandlerTest::test_aliasing_incar PASSED [ 67%] 659s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_amin PASSED [ 67%] 659s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_as_from_dict PASSED [ 68%] 674s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic PASSED [ 69%] 676s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic_repeat PASSED [ 69%] 681s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_ionic PASSED [ 70%] 682s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_scan PASSED [ 70%] 683s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_correct_normal_with_condition PASSED [ 71%] 686s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_psmaxn PASSED [ 72%] 686s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_uncorrectable PASSED [ 72%] 686s tests/vasp/test_handlers.py::IncorrectSmearingHandlerTest::test_check_correct_scan_metal PASSED [ 73%] 686s tests/vasp/test_handlers.py::IncorrectSmearingHandlerStaticTest::test_check_correct_scan_metal PASSED [ 74%] 686s tests/vasp/test_handlers.py::IncorrectSmearingHandlerFermiTest::test_check_correct_scan_metal PASSED [ 74%] 686s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_correct_scan_metal PASSED [ 75%] 686s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_with_non_kspacing_wf PASSED [ 75%] 687s tests/vasp/test_handlers.py::LargeSigmaHandlerTest::test_check_correct_large_sigma PASSED [ 76%] 687s tests/vasp/test_handlers.py::ZpotrfErrorHandlerTest::test_first_step PASSED [ 77%] 687s tests/vasp/test_handlers.py::ZpotrfErrorHandlerTest::test_potim_correction PASSED [ 77%] 687s tests/vasp/test_handlers.py::ZpotrfErrorHandlerTest::test_static_run_correction PASSED [ 78%] 687s tests/vasp/test_handlers.py::ZpotrfErrorHandlerSmallTest::test_small PASSED [ 79%] 688s tests/vasp/test_handlers.py::WalltimeHandlerTest::test_check_and_correct PASSED [ 79%] 688s tests/vasp/test_handlers.py::WalltimeHandlerTest::test_walltime_start PASSED [ 80%] 688s tests/vasp/test_handlers.py::PositiveEnergyHandlerTest::test_check_correct PASSED [ 80%] 688s tests/vasp/test_handlers.py::PotimHandlerTest::test_check_correct PASSED [ 81%] 691s tests/vasp/test_handlers.py::LrfCommHandlerTest::test_lrf_comm PASSED [ 82%] 691s tests/vasp/test_handlers.py::KpointsTransHandlerTest::test_kpoints_trans PASSED [ 82%] 691s tests/vasp/test_handlers.py::OutOfMemoryHandlerTest::test_oom PASSED [ 83%] 691s tests/vasp/test_handlers.py::DriftErrorHandlerTest::test_check PASSED [ 83%] 693s tests/vasp/test_handlers.py::DriftErrorHandlerTest::test_correct PASSED [ 84%] 693s tests/vasp/test_handlers.py::NonConvergingErrorHandlerTest::test_as_from_dict PASSED [ 85%] 693s tests/vasp/test_handlers.py::NonConvergingErrorHandlerTest::test_check PASSED [ 85%] 693s tests/vasp/test_handlers.py::NonConvergingErrorHandlerTest::test_correct PASSED [ 86%] 693s tests/vasp/test_io.py::TestIO::test_load_outcar PASSED [ 87%] 693s tests/vasp/test_io.py::TestIO::test_load_vasprun PASSED [ 87%] 693s tests/vasp/test_jobs.py::TestVaspJob::test_as_from_dict PASSED [ 88%] 694s tests/vasp/test_jobs.py::TestVaspJob::test_setup PASSED [ 88%] 694s tests/vasp/test_jobs.py::TestVaspJob::test_setup_run_no_kpts PASSED [ 89%] 702s tests/vasp/test_jobs.py::TestVaspJob::test_update_incar PASSED [ 90%] 703s tests/vasp/test_jobs.py::TestVaspJob::test_postprocess PASSED [ 90%] 706s tests/vasp/test_jobs.py::TestVaspJob::test_continue PASSED [ 91%] 706s tests/vasp/test_jobs.py::TestVaspJob::test_static PASSED [ 91%] 706s tests/vasp/test_jobs.py::TestVaspNEBJob::test_as_from_dict PASSED [ 92%] 706s tests/vasp/test_jobs.py::TestVaspNEBJob::test_setup PASSED [ 93%] 706s tests/vasp/test_jobs.py::TestVaspNEBJob::test_postprocess PASSED [ 93%] 706s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run PASSED [ 94%] 706s tests/vasp/test_utils.py::TestKPointUtils::test_k_point_estimate PASSED [ 95%] 706s tests/vasp/test_utils.py::TestKPointUtils::test_kpoint_density_increase PASSED [ 95%] 707s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_check_and_correct PASSED [ 96%] 707s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_as_dict PASSED [ 96%] 707s tests/vasp/test_validators.py::TestVaspFilesValidator::test_check_and_correct PASSED [ 97%] 707s tests/vasp/test_validators.py::TestVaspFilesValidator::test_as_dict PASSED [ 98%] 708s tests/vasp/test_validators.py::TestVaspNpTMDValidator::test_check_and_correct PASSED [ 98%] 708s tests/vasp/test_validators.py::TestVaspNpTMDValidator::test_as_dict PASSED [ 99%] 710s tests/vasp/test_validators.py::TestVaspAECCARValidator::test_check_and_correct PASSED [100%] 710s 710s =============================== warnings summary =============================== 710s ../../../../usr/lib/python3/dist-packages/_pytest/unittest.py:89 710s /usr/lib/python3/dist-packages/_pytest/unittest.py:89: FutureWarning: PymatgenTest is deprecated, and will be removed on 2026-01-01 710s Use MatSciTest in pymatgen.util.testing instead. 710s return self.obj("runTest") 710s 710s ../../../../usr/lib/python3/dist-packages/_pytest/unittest.py:216 710s /usr/lib/python3/dist-packages/_pytest/unittest.py:216: FutureWarning: PymatgenTest is deprecated, and will be removed on 2026-01-01 710s Use MatSciTest in pymatgen.util.testing instead. 710s return self.parent.obj(self.name) 710s 710s tests/feff/test_handlers.py::UnconvergedErrorHandlerTest::test_check_unconverged 710s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_dentet 710s tests/vasp/test_utils.py::TestKPointUtils::test_kpoint_density_increase 710s tests/vasp/test_utils.py::TestKPointUtils::test_kpoint_density_increase 710s /usr/lib/python3/dist-packages/spglib/spg.py:438: DeprecationWarning: Set OLD_ERROR_HANDLING to false and catch the errors directly. 710s _set_no_error(_throw) 710s 710s tests/feff/test_jobs.py::test_setup 710s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/feff_unconverged/tmpdlfsu6av to itself 710s warnings.warn(f"Cannot copy {fpath} to itself") 710s 710s tests/feff/test_jobs.py::test_postprocess 710s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/feff_unconverged/tmp3f3ou6oc to itself 710s warnings.warn(f"Cannot copy {fpath} to itself") 710s 710s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_bad_file 710s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 710s ./bad_file.out: Termination error or bad Gaussian output file ! 710s self._parse(self.filename) 710s 710s tests/gaussian/test_handlers.py: 19 warnings 710s /usr/lib/python3/dist-packages/custodian/gaussian/handlers.py:490: FutureWarning: We strongly discourage using a default `mode`, it would be set to `r` now but would not be allowed after 2025-06-01 710s with zopen(os.path.join(directory, self.output_file)) as f: 710s 710s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_blank_line 710s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 710s ./zmatrix.out: Termination error or bad Gaussian output file ! 710s self._parse(self.filename) 710s 710s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_coord_inputs 710s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 710s ./coord_inputs.out: Termination error or bad Gaussian output file ! 710s self._parse(self.filename) 710s 710s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_coords_dict_geom 710s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 710s ./coords_dict_geom.out: Termination error or bad Gaussian output file ! 710s self._parse(self.filename) 710s 710s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_coords_string_geom 710s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 710s ./coords_string_geom.out: Termination error or bad Gaussian output file ! 710s self._parse(self.filename) 710s 710s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_found_coords 710s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 710s ./found_coords.out: Termination error or bad Gaussian output file ! 710s self._parse(self.filename) 710s 710s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_insufficient_memory 710s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 710s ./insufficient_memory.out: Termination error or bad Gaussian output file ! 710s self._parse(self.filename) 710s 710s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_linear_bend 710s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 710s ./linear_bend.out: Termination error or bad Gaussian output file ! 710s self._parse(self.filename) 710s 710s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_missing_file 710s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 710s ./missing_file.out: Termination error or bad Gaussian output file ! 710s self._parse(self.filename) 710s 710s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_missing_mol 710s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 710s ./missing_mol.out: Termination error or bad Gaussian output file ! 710s self._parse(self.filename) 710s 710s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_better_guess 710s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 710s ./opt_steps_better_guess.out: Termination error or bad Gaussian output file ! 710s self._parse(self.filename) 710s 710s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_cycles 710s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 710s ./opt_steps_cycles.out: Termination error or bad Gaussian output file ! 710s self._parse(self.filename) 710s 710s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_from_structure 710s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 710s ./opt_steps_from_structure.out: Termination error or bad Gaussian output file ! 710s self._parse(self.filename) 710s 710s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_opt_steps_int_grid 710s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 710s ./opt_steps_int_grid.out: Termination error or bad Gaussian output file ! 710s self._parse(self.filename) 710s 710s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_scf_convergence_algorithm 710s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 710s ./scf_convergence_algorithm.out: Termination error or bad Gaussian output file ! 710s self._parse(self.filename) 710s 710s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_scf_convergence_better_guess 710s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 710s ./scf_convergence_better_guess.out: Termination error or bad Gaussian output file ! 710s self._parse(self.filename) 710s 710s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_scf_convergence_cycles 710s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 710s ./scf_convergence_cycles.out: Termination error or bad Gaussian output file ! 710s self._parse(self.filename) 710s 710s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_solute_solvent_surface 710s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 710s ./solute_solvent_surface.out: Termination error or bad Gaussian output file ! 710s self._parse(self.filename) 710s 710s tests/gaussian/test_handlers.py::TestGaussianErrorHandler::test_syntax 710s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:585: UserWarning: 710s ./syntax.out: Termination error or bad Gaussian output file ! 710s self._parse(self.filename) 710s 710s tests/lobster/test_jobs.py::TestLobsterJob::test_setup 710s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/lobster/lobsterins/tmpyl8mem0v to itself 710s warnings.warn(f"Cannot copy {fpath} to itself") 710s 710s tests/lobster/test_jobs.py::TestLobsterJob::test_setup 710s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/lobster/lobsterins/tmp2jzw1pve to itself 710s warnings.warn(f"Cannot copy {fpath} to itself") 710s 710s tests/lobster/test_jobs.py::TestLobsterJob::test_postprocess 710s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/lobster/vasp_lobster_output/tmpmqu8k7vr to itself 710s warnings.warn(f"Cannot copy {fpath} to itself") 710s 710s tests/lobster/test_jobs.py::TestLobsterJob::test_postprocess 710s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/lobster/vasp_lobster_output/tmp0ne2c3fd to itself 710s warnings.warn(f"Cannot copy {fpath} to itself") 710s 710s tests/test_custodian.py::CustodianTest::test_exitcode_error 710s /usr/lib/python3/dist-packages/custodian/custodian.py:520: UserWarning: subprocess returned a non-zero return code. Check outputs carefully... 710s warnings.warn("subprocess returned a non-zero return code. Check outputs carefully...") 710s 710s tests/vasp/test_handlers.py: 50 warnings 710s tests/vasp/test_jobs.py: 1 warning 710s tests/vasp/test_validators.py: 1 warning 710s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2973: UnknownPotcarWarning: POTCAR data with symbol Na is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 710s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 710s 710s tests/vasp/test_handlers.py: 50 warnings 710s tests/vasp/test_jobs.py: 2 warnings 710s tests/vasp/test_validators.py: 1 warning 710s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2973: UnknownPotcarWarning: POTCAR data with symbol Fe is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 710s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 710s 710s tests/vasp/test_handlers.py: 50 warnings 710s tests/vasp/test_jobs.py: 1 warning 710s tests/vasp/test_validators.py: 1 warning 710s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2973: UnknownPotcarWarning: POTCAR data with symbol Ni is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 710s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 710s 710s tests/vasp/test_handlers.py: 50 warnings 710s tests/vasp/test_jobs.py: 2 warnings 710s tests/vasp/test_validators.py: 1 warning 710s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2973: UnknownPotcarWarning: POTCAR data with symbol O is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 710s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 710s 710s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_dentet 710s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_large_kspacing 710s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:251: UserWarning: Your specified k-point density was too low to use with the tetrahedron method. The k-point density has been increased, please check that your results are not impacted by this change. 710s warnings.warn( 710s 710s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_dentet 710s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:261: UserWarning: Your specified k-point density was too low to use with the tetrahedron method. The smearing method has been changed to Gaussian, please check that your results are not impacted by this change. 710s warnings.warn( 710s 710s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_eddiag 710s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:314: UserWarning: Elements in POSCAR would be overwritten by default_names=['Na', 'Fe', 'Ni', 'O'] 710s return cls.from_str(file.read(), names, read_velocities=read_velocities) # type:ignore[arg-type] 710s 710s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_gradient_not_orthogonal 710s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:587: UserWarning: EDWAV error reported by VASP without a simultaneous algo_tet error. You may wish to consider recompiling VASP with the -O1 optimization if you used -O2 and this error keeps cropping up. 710s warnings.warn( 710s 710s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_nbands_not_sufficient 710s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:677: UserWarning: Double-check your INCAR. Something is potentially wrong. 710s warnings.warn("Double-check your INCAR. Something is potentially wrong.", UserWarning) 710s 710s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_read_error 710s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:689: UserWarning: Looks like you made a typo in the INCAR. Please double-check it. 710s warnings.warn("Looks like you made a typo in the INCAR. Please double-check it.", UserWarning) 710s 710s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_set_core_wf 710s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:682: UserWarning: We suggest using a new version of the POTCAR files to resolve the SET_CORE_WF error. 710s warnings.warn( 710s 710s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_few_bands 710s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2973: UnknownPotcarWarning: POTCAR data with symbol Eu is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 710s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 710s 710s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_few_bands 710s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2973: UnknownPotcarWarning: POTCAR data with symbol In_d is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 710s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 710s 710s tests/vasp/test_handlers.py::VaspErrorHandlerTest::test_too_few_bands 710s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2973: UnknownPotcarWarning: POTCAR data with symbol Rh_pv is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 710s psingle = PotcarSingle(f"{p_strip}\nEnd of Dataset\n") 710s 710s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_amin 710s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 710s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_amin1/POTCAR 710s if potcar := self.get_potcars(path): 710s 710s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_amin 710s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 710s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_amin1/POTCAR 710s potcar = self.get_potcars(path) 710s 710s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_amin 710s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic 710s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic_repeat 710s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_scan 710s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_correct_normal_with_condition 710s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_psmaxn 710s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_uncorrectable 710s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_check_and_correct 710s /usr/lib/python3/dist-packages/custodian/vasp/io.py:21: UnconvergedVASPWarning: ./vasprun.xml is an unconverged VASP run. 710s Electronic convergence reached: False. 710s Ionic convergence reached: True. 710s return Vasprun(filepath, **vasprun_kwargs) 710s 710s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic 710s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 710s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_electronic0/POTCAR 710s if potcar := self.get_potcars(path): 710s 710s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic 710s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 710s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_electronic0/POTCAR 710s potcar = self.get_potcars(path) 710s 710s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic_repeat 710s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 710s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_electronic_0/POTCAR 710s if potcar := self.get_potcars(path): 710s 710s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_electronic_repeat 710s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 710s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_electronic_0/POTCAR 710s potcar = self.get_potcars(path) 710s 710s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_ionic 710s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 710s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_ionic0/POTCAR 710s if potcar := self.get_potcars(path): 710s 710s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_ionic 710s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 710s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_ionic0/POTCAR 710s potcar = self.get_potcars(path) 710s 710s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_ionic 710s /usr/lib/python3/dist-packages/custodian/vasp/io.py:21: UnconvergedVASPWarning: ./vasprun.xml is an unconverged VASP run. 710s Electronic convergence reached: True. 710s Ionic convergence reached: False. 710s return Vasprun(filepath, **vasprun_kwargs) 710s 710s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_scan 710s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 710s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_scan0/POTCAR 710s if potcar := self.get_potcars(path): 710s 710s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_check_correct_scan 710s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 710s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_check_correct_scan0/POTCAR 710s potcar = self.get_potcars(path) 710s 710s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_correct_normal_with_condition 710s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 710s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_correct_normal_with_condi0/POTCAR 710s if potcar := self.get_potcars(path): 710s 710s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_correct_normal_with_condition 710s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 710s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_correct_normal_with_condi0/POTCAR 710s potcar = self.get_potcars(path) 710s 710s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_psmaxn 710s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 710s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_psmaxn0/POTCAR 710s if potcar := self.get_potcars(path): 710s 710s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_psmaxn 710s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 710s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_psmaxn0/POTCAR 710s potcar = self.get_potcars(path) 710s 710s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_uncorrectable 710s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 710s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_uncorrectable0/POTCAR 710s if potcar := self.get_potcars(path): 710s 710s tests/vasp/test_handlers.py::UnconvergedErrorHandlerTest::test_uncorrectable 710s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 710s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/tmp/pytest-of-ubuntu/pytest-0/test_uncorrectable0/POTCAR 710s potcar = self.get_potcars(path) 710s 710s tests/vasp/test_handlers.py::IncorrectSmearingHandlerTest::test_check_correct_scan_metal 710s tests/vasp/test_handlers.py::IncorrectSmearingHandlerStaticTest::test_check_correct_scan_metal 710s tests/vasp/test_handlers.py::IncorrectSmearingHandlerFermiTest::test_check_correct_scan_metal 710s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_correct_scan_metal 710s tests/vasp/test_io.py::TestIO::test_load_vasprun 710s tests/vasp/test_jobs.py::TestVaspJob::test_update_incar 710s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 710s 710s if potcar := self.get_potcars(path): 710s 710s tests/vasp/test_handlers.py::IncorrectSmearingHandlerTest::test_check_correct_scan_metal 710s tests/vasp/test_handlers.py::IncorrectSmearingHandlerStaticTest::test_check_correct_scan_metal 710s tests/vasp/test_handlers.py::IncorrectSmearingHandlerFermiTest::test_check_correct_scan_metal 710s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_correct_scan_metal 710s tests/vasp/test_io.py::TestIO::test_load_vasprun 710s tests/vasp/test_jobs.py::TestVaspJob::test_update_incar 710s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 710s 710s potcar = self.get_potcars(path) 710s 710s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_with_non_kspacing_wf 710s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/vasp/test_handlers.py:831: FutureWarning: ScanMetalHandler is deprecated; use KspacingMetalHandler in custodian.vasp.handlers instead. 710s ScanMetalHandler was deprecated on 2023-11-03 and will be removed in a future release. Use KspacingMetalHandler instead. 710s assert isinstance(ScanMetalHandler(), KspacingMetalHandler) 710s 710s tests/vasp/test_handlers.py::KspacingMetalHandlerTest::test_check_with_non_kspacing_wf 710s /usr/lib/python3/dist-packages/custodian/vasp/handlers.py:1350: DeprecationWarning: ScanMetalHandler is deprecated and will be removed in a future release. Use KspacingMetalHandler instead. 710s warnings.warn( 710s 710s tests/vasp/test_handlers.py::NonConvergingErrorHandlerTest::test_correct 710s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:890: BadIncarWarning: Duplicate keys found (case-insensitive): ['ALGO'] 710s return cls({k: v for k, v in dct.items() if k not in ("@module", "@class")}) 710s 710s tests/vasp/test_jobs.py::TestVaspJob::test_setup 710s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/tmplguo05ay to itself 710s warnings.warn(f"Cannot copy {fpath} to itself") 710s 710s tests/vasp/test_jobs.py::TestVaspJob::test_setup_run_no_kpts 710s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/kspacing/tmpph3pliu7 to itself 710s warnings.warn(f"Cannot copy {fpath} to itself") 710s 710s tests/vasp/test_jobs.py::TestVaspJob::test_update_incar 710s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/update_incar/tmp19g5cg59 to itself 710s warnings.warn(f"Cannot copy {fpath} to itself") 710s 710s tests/vasp/test_jobs.py::TestVaspJob::test_postprocess 710s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/postprocess/tmpypnnbpau to itself 710s warnings.warn(f"Cannot copy {fpath} to itself") 710s 710s tests/vasp/test_jobs.py::TestVaspJob::test_continue 710s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/postprocess/tmp0a1a78cf to itself 710s warnings.warn(f"Cannot copy {fpath} to itself") 710s 710s tests/vasp/test_jobs.py::TestVaspJob::test_continue 710s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/postprocess/tmpih43s8kl to itself 710s warnings.warn(f"Cannot copy {fpath} to itself") 710s 710s tests/vasp/test_jobs.py::TestVaspNEBJob::test_setup 710s /usr/lib/python3/dist-packages/monty/shutil.py:42: UserWarning: Cannot copy /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/setup_neb/tmp2j364bcz to itself 712s warnings.warn(f"Cannot copy {fpath} to itself") 712s 712s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 712s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 712s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 712s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 712s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 712s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 712s /usr/lib/python3/dist-packages/spglib/cell.py:106: DeprecationWarning: Set OLD_ERROR_HANDLING to false and catch the errors directly. 712s _set_no_error() 712s 712s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 712s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 712s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 712s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 712s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 712s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 712s /usr/lib/python3/dist-packages/spglib/spg.py:354: DeprecationWarning: Set OLD_ERROR_HANDLING to false and catch the errors directly. 712s _set_no_error() 712s 712s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 712s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 712s /usr/lib/python3/dist-packages/pymatgen/symmetry/bandstructure.py:179: UserWarning: The input structure does not match the expected standard primitive! The path may be incorrect. Use at your own risk. 712s kpath = KPathSetyawanCurtarolo(self._structure, symprec, angle_tolerance, atol) 712s 712s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 712s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2507: UnknownPotcarWarning: POTCAR data with symbol Na_pv is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 712s return cls(file.read(), symbol=symbol or None) # type:ignore[arg-type] 712s 712s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 712s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2507: UnknownPotcarWarning: POTCAR data with symbol Fe_pv is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 712s return cls(file.read(), symbol=symbol or None) # type:ignore[arg-type] 712s 712s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 712s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2507: UnknownPotcarWarning: POTCAR data with symbol Ni_pv is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 712s return cls(file.read(), symbol=symbol or None) # type:ignore[arg-type] 712s 712s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 712s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:2507: UnknownPotcarWarning: POTCAR data with symbol O is not known to pymatgen. Your POTCAR may be corrupted or pymatgen's POTCAR database is incomplete. 712s return cls(file.read(), symbol=symbol or None) # type:ignore[arg-type] 712s 712s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 712s /usr/lib/python3/dist-packages/pymatgen/io/vasp/sets.py:486: BadInputSetWarning: POTCAR data with symbol Na_pv is not known by pymatgen to correspond with the selected user_potcar_functional='PBE'. This POTCAR is known to correspond with functionals []. Please verify that you are using the right POTCARs! 712s potcar="\n".join(self.potcar_symbols) if potcar_spec else self.potcar, 712s 712s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 712s /usr/lib/python3/dist-packages/pymatgen/io/vasp/sets.py:486: BadInputSetWarning: POTCAR data with symbol Fe_pv is not known by pymatgen to correspond with the selected user_potcar_functional='PBE'. This POTCAR is known to correspond with functionals []. Please verify that you are using the right POTCARs! 712s potcar="\n".join(self.potcar_symbols) if potcar_spec else self.potcar, 712s 712s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 712s /usr/lib/python3/dist-packages/pymatgen/io/vasp/sets.py:486: BadInputSetWarning: POTCAR data with symbol Ni_pv is not known by pymatgen to correspond with the selected user_potcar_functional='PBE'. This POTCAR is known to correspond with functionals []. Please verify that you are using the right POTCARs! 712s potcar="\n".join(self.potcar_symbols) if potcar_spec else self.potcar, 712s 712s tests/vasp/test_jobs.py::TestGenerateVaspInputJob::test_run 712s /usr/lib/python3/dist-packages/pymatgen/io/vasp/sets.py:486: BadInputSetWarning: POTCAR data with symbol O is not known by pymatgen to correspond with the selected user_potcar_functional='PBE'. This POTCAR is known to correspond with functionals []. Please verify that you are using the right POTCARs! 712s potcar="\n".join(self.potcar_symbols) if potcar_spec else self.potcar, 712s 712s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_check_and_correct 712s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1328: UserWarning: No POTCAR file with matching TITEL fields was found in 712s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/unconverged/POTCAR 712s if potcar := self.get_potcars(path): 712s 712s tests/vasp/test_validators.py::TestVasprunXMLValidator::test_check_and_correct 712s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:1339: UserWarning: No POTCAR file with matching TITEL fields was found in 712s /tmp/autopkgtest.B5h7bg/autopkgtest_tmp/runtests/tests/files/unconverged/POTCAR 712s potcar = self.get_potcars(path) 712s 712s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 712s =========== 162 passed, 3 skipped, 343 warnings in 205.08s (0:03:25) =========== 716s autopkgtest [05:54:32]: test test-custodian: -----------------------] 716s test-custodian PASS 716s autopkgtest [05:54:32]: test test-custodian: - - - - - - - - - - results - - - - - - - - - - 717s autopkgtest [05:54:33]: @@@@@@@@@@@@@@@@@@@@ summary 717s test-custodian PASS