0s autopkgtest [00:45:14]: starting date and time: 2025-10-20 00:45:14+0000 0s autopkgtest [00:45:14]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [00:45:14]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.yqtje1pt/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:node-jquery --apt-upgrade bamtools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=node-jquery/3.7.1+dfsg+~3.5.33-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-1.secgroup --name adt-resolute-s390x-bamtools-20251020-004514-juju-7f2275-prod-proposed-migration-environment-20-44383be7-547f-4bf4-80ad-855b35a071f2 --image adt/ubuntu-resolute-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-s390x-bamtools-20251020-004514-juju-7f2275-prod-proposed-migration-environment-20-44383be7-547f-4bf4-80ad-855b35a071f2 from image adt/ubuntu-resolute-s390x-server-20251019.img (UUID 7a83b4ca-2eb3-4cb0-b8d6-be2f16efcb4e)... 86s autopkgtest [00:46:40]: testbed dpkg architecture: s390x 86s autopkgtest [00:46:40]: testbed apt version: 3.1.8ubuntu1 86s autopkgtest [00:46:40]: @@@@@@@@@@@@@@@@@@@@ test bed setup 86s autopkgtest [00:46:40]: testbed release detected to be: None 87s autopkgtest [00:46:41]: updating testbed package index (apt update) 87s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 88s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 88s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 88s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 88s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [396 kB] 88s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [15.8 kB] 88s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 88s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [47.8 kB] 88s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x Packages [102 kB] 88s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted s390x Packages [940 B] 88s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe s390x Packages [259 kB] 88s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse s390x Packages [6184 B] 88s Fetched 917 kB in 1s (798 kB/s) 89s Reading package lists... 90s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 90s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 90s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 90s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 91s Reading package lists... 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 91s Calculating upgrade... 91s The following packages will be upgraded: 91s distro-info-data dpkg dpkg-dev libaudit-common libaudit1 libdpkg-perl 91s libseccomp2 python-apt-common python3-apt 91s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 91s Need to get 3003 kB of archives. 91s After this operation, 427 kB of additional disk space will be used. 91s Get:1 http://ftpmaster.internal/ubuntu resolute/main s390x dpkg s390x 1.22.21ubuntu4 [1287 kB] 92s Get:2 http://ftpmaster.internal/ubuntu resolute/main s390x libaudit-common all 1:4.0.5-1build2 [6596 B] 92s Get:3 http://ftpmaster.internal/ubuntu resolute/main s390x libaudit1 s390x 1:4.0.5-1build2 [57.0 kB] 92s Get:4 http://ftpmaster.internal/ubuntu resolute/main s390x distro-info-data all 0.68 [7378 B] 92s Get:5 http://ftpmaster.internal/ubuntu resolute/main s390x libseccomp2 s390x 2.6.0-2ubuntu3 [57.5 kB] 92s Get:6 http://ftpmaster.internal/ubuntu resolute/main s390x python-apt-common all 3.0.0ubuntu2 [21.7 kB] 92s Get:7 http://ftpmaster.internal/ubuntu resolute/main s390x python3-apt s390x 3.0.0ubuntu2 [198 kB] 92s Get:8 http://ftpmaster.internal/ubuntu resolute/main s390x dpkg-dev all 1.22.21ubuntu4 [1088 kB] 92s Get:9 http://ftpmaster.internal/ubuntu resolute/main s390x libdpkg-perl all 1.22.21ubuntu4 [280 kB] 92s dpkg-preconfigure: unable to re-open stdin: No such file or directory 93s Fetched 3003 kB in 1s (2315 kB/s) 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56852 files and directories currently installed.) 93s Preparing to unpack .../dpkg_1.22.21ubuntu4_s390x.deb ... 93s Unpacking dpkg (1.22.21ubuntu4) over (1.22.21ubuntu3) ... 93s Setting up dpkg (1.22.21ubuntu4) ... 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56852 files and directories currently installed.) 93s Preparing to unpack .../libaudit-common_1%3a4.0.5-1build2_all.deb ... 93s Unpacking libaudit-common (1:4.0.5-1build2) over (1:4.0.5-1build1) ... 93s Setting up libaudit-common (1:4.0.5-1build2) ... 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56852 files and directories currently installed.) 93s Preparing to unpack .../libaudit1_1%3a4.0.5-1build2_s390x.deb ... 93s Unpacking libaudit1:s390x (1:4.0.5-1build2) over (1:4.0.5-1build1) ... 93s Setting up libaudit1:s390x (1:4.0.5-1build2) ... 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56852 files and directories currently installed.) 93s Preparing to unpack .../0-distro-info-data_0.68_all.deb ... 93s Unpacking distro-info-data (0.68) over (0.67~ubuntu1) ... 93s Preparing to unpack .../1-libseccomp2_2.6.0-2ubuntu3_s390x.deb ... 93s Unpacking libseccomp2:s390x (2.6.0-2ubuntu3) over (2.6.0-2ubuntu2) ... 93s Preparing to unpack .../2-python-apt-common_3.0.0ubuntu2_all.deb ... 93s Unpacking python-apt-common (3.0.0ubuntu2) over (3.0.0ubuntu1) ... 93s Preparing to unpack .../3-python3-apt_3.0.0ubuntu2_s390x.deb ... 93s Unpacking python3-apt (3.0.0ubuntu2) over (3.0.0ubuntu1) ... 93s Preparing to unpack .../4-dpkg-dev_1.22.21ubuntu4_all.deb ... 94s Unpacking dpkg-dev (1.22.21ubuntu4) over (1.22.21ubuntu3) ... 94s Preparing to unpack .../5-libdpkg-perl_1.22.21ubuntu4_all.deb ... 94s Unpacking libdpkg-perl (1.22.21ubuntu4) over (1.22.21ubuntu3) ... 94s Setting up distro-info-data (0.68) ... 94s Setting up libseccomp2:s390x (2.6.0-2ubuntu3) ... 94s Setting up libdpkg-perl (1.22.21ubuntu4) ... 94s Setting up python-apt-common (3.0.0ubuntu2) ... 94s Setting up python3-apt (3.0.0ubuntu2) ... 94s Setting up dpkg-dev (1.22.21ubuntu4) ... 94s Processing triggers for man-db (2.13.1-1) ... 95s Processing triggers for libc-bin (2.42-0ubuntu3) ... 95s autopkgtest [00:46:49]: upgrading testbed (apt dist-upgrade and autopurge) 96s Reading package lists... 96s Building dependency tree... 96s Reading state information... 96s Calculating upgrade... 96s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 96s Reading package lists... 96s Building dependency tree... 96s Reading state information... 96s Solving dependencies... 96s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 97s autopkgtest [00:46:51]: rebooting testbed after setup commands that affected boot 112s autopkgtest [00:47:06]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP Mon Sep 22 08:56:47 UTC 2025 115s autopkgtest [00:47:09]: @@@@@@@@@@@@@@@@@@@@ apt-source bamtools 118s Get:1 http://ftpmaster.internal/ubuntu resolute/universe bamtools 2.5.2+dfsg-6build1 (dsc) [2386 B] 118s Get:2 http://ftpmaster.internal/ubuntu resolute/universe bamtools 2.5.2+dfsg-6build1 (tar) [156 kB] 118s Get:3 http://ftpmaster.internal/ubuntu resolute/universe bamtools 2.5.2+dfsg-6build1 (diff) [11.4 kB] 118s gpgv: Signature made Sat Nov 9 12:15:34 2024 UTC 118s gpgv: using RSA key B8340990283D8D9BC1949AC74799A35146D12B35 118s gpgv: Can't check signature: No public key 118s dpkg-source: warning: cannot verify inline signature for ./bamtools_2.5.2+dfsg-6build1.dsc: no acceptable signature found 119s autopkgtest [00:47:12]: testing package bamtools version 2.5.2+dfsg-6build1 119s autopkgtest [00:47:13]: build not needed 120s autopkgtest [00:47:14]: test run-unit-test: preparing testbed 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s Solving dependencies... 120s The following NEW packages will be installed: 120s bamtools libbamtools-dev libbamtools-doc libbamtools2.5.2 libjs-jquery 120s libjsoncpp26 zlib1g-dev 120s 0 upgraded, 7 newly installed, 0 to remove and 0 not upgraded. 120s Need to get 2012 kB of archives. 120s After this operation, 7477 kB of additional disk space will be used. 120s Get:1 http://ftpmaster.internal/ubuntu resolute/universe s390x libbamtools2.5.2 s390x 2.5.2+dfsg-6build1 [142 kB] 121s Get:2 http://ftpmaster.internal/ubuntu resolute/main s390x libjsoncpp26 s390x 1.9.6-3 [80.8 kB] 121s Get:3 http://ftpmaster.internal/ubuntu resolute/universe s390x bamtools s390x 2.5.2+dfsg-6build1 [174 kB] 121s Get:4 http://ftpmaster.internal/ubuntu resolute/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu2 [897 kB] 122s Get:5 http://ftpmaster.internal/ubuntu resolute/universe s390x libbamtools-dev s390x 2.5.2+dfsg-6build1 [237 kB] 122s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main s390x libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 122s Get:7 http://ftpmaster.internal/ubuntu resolute/universe s390x libbamtools-doc all 2.5.2+dfsg-6build1 [159 kB] 122s Fetched 2012 kB in 2s (980 kB/s) 122s Selecting previously unselected package libbamtools2.5.2:s390x. 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56856 files and directories currently installed.) 123s Preparing to unpack .../0-libbamtools2.5.2_2.5.2+dfsg-6build1_s390x.deb ... 123s Unpacking libbamtools2.5.2:s390x (2.5.2+dfsg-6build1) ... 123s Selecting previously unselected package libjsoncpp26:s390x. 123s Preparing to unpack .../1-libjsoncpp26_1.9.6-3_s390x.deb ... 123s Unpacking libjsoncpp26:s390x (1.9.6-3) ... 123s Selecting previously unselected package bamtools. 123s Preparing to unpack .../2-bamtools_2.5.2+dfsg-6build1_s390x.deb ... 123s Unpacking bamtools (2.5.2+dfsg-6build1) ... 123s Selecting previously unselected package zlib1g-dev:s390x. 123s Preparing to unpack .../3-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_s390x.deb ... 123s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 123s Selecting previously unselected package libbamtools-dev:s390x. 123s Preparing to unpack .../4-libbamtools-dev_2.5.2+dfsg-6build1_s390x.deb ... 123s Unpacking libbamtools-dev:s390x (2.5.2+dfsg-6build1) ... 123s Selecting previously unselected package libjs-jquery. 123s Preparing to unpack .../5-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 123s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 123s Selecting previously unselected package libbamtools-doc. 123s Preparing to unpack .../6-libbamtools-doc_2.5.2+dfsg-6build1_all.deb ... 123s Unpacking libbamtools-doc (2.5.2+dfsg-6build1) ... 123s Setting up libjsoncpp26:s390x (1.9.6-3) ... 123s Setting up libbamtools2.5.2:s390x (2.5.2+dfsg-6build1) ... 123s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 123s Setting up bamtools (2.5.2+dfsg-6build1) ... 123s Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 123s Setting up libbamtools-dev:s390x (2.5.2+dfsg-6build1) ... 123s Setting up libbamtools-doc (2.5.2+dfsg-6build1) ... 123s Processing triggers for man-db (2.13.1-1) ... 123s Processing triggers for libc-bin (2.42-0ubuntu3) ... 125s autopkgtest [00:47:19]: test run-unit-test: [----------------------- 125s 6 125s @HD VN:1.5 SO:coordinate 125s @SQ SN:ref LN:45 125s 125s 125s ********************************************** 125s Stats for BAM file(s): 125s ********************************************** 125s 125s Total reads: 6 125s Mapped reads: 6 (100%) 125s Forward strand: 4 (66.6667%) 125s Reverse strand: 2 (33.3333%) 125s Failed QC: 0 (0%) 125s Duplicates: 0 (0%) 125s Paired-end reads: 2 (33.3333%) 125s 'Proper-pairs': 2 (100%) 125s Both pairs mapped: 2 (100%) 125s Read 1: 1 125s Read 2: 1 125s Singletons: 0 (0%) 125s 125s autopkgtest [00:47:19]: test run-unit-test: -----------------------] 126s run-unit-test PASS 126s autopkgtest [00:47:20]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 126s autopkgtest [00:47:20]: @@@@@@@@@@@@@@@@@@@@ summary 126s run-unit-test PASS