0s autopkgtest [04:43:03]: starting date and time: 2025-10-29 04:43:03+0000 0s autopkgtest [04:43:03]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [04:43:03]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.bduirg0n/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:liburi-perl --apt-upgrade trinityrnaseq --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=liburi-perl/5.34-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-ppc64el-20.secgroup --name adt-resolute-ppc64el-trinityrnaseq-20251029-044303-juju-7f2275-prod-proposed-migration-environment-2-4c064181-e7c3-4361-a609-1f8329302e3d --image adt/ubuntu-resolute-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-ppc64el-trinityrnaseq-20251029-044303-juju-7f2275-prod-proposed-migration-environment-2-4c064181-e7c3-4361-a609-1f8329302e3d from image adt/ubuntu-resolute-ppc64el-server-20251028.img (UUID e5a61277-788c-4e58-9b1d-7ad1933264fb)... 53s autopkgtest [04:43:56]: testbed dpkg architecture: ppc64el 53s autopkgtest [04:43:56]: testbed apt version: 3.1.8ubuntu1 53s autopkgtest [04:43:56]: @@@@@@@@@@@@@@@@@@@@ test bed setup 54s autopkgtest [04:43:57]: testbed release detected to be: None 54s autopkgtest [04:43:57]: updating testbed package index (apt update) 55s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 55s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 55s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 55s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 55s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [70.0 kB] 56s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [3625 kB] 61s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [203 kB] 61s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5856 B] 61s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el Packages [258 kB] 62s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted ppc64el Packages [940 B] 62s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el Packages [2359 kB] 63s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse ppc64el Packages [37.3 kB] 64s Fetched 6647 kB in 9s (720 kB/s) 65s Reading package lists... 65s Failed to check for VM: Permission denied 65s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 65s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 66s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 66s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 67s Reading package lists... 67s Reading package lists... 67s Building dependency tree... 67s Reading state information... 67s Calculating upgrade... 67s The following packages will be upgraded: 67s apt cloud-init cloud-init-base iprutils libapt-pkg7.0 python3-blinker 67s python3-lazr.uri 67s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 67s Need to get 3748 kB of archives. 67s After this operation, 128 kB of additional disk space will be used. 67s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el libapt-pkg7.0 ppc64el 3.1.11 [1286 kB] 68s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el apt ppc64el 3.1.11 [1510 kB] 68s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el iprutils ppc64el 2.4.19-4 [300 kB] 68s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el cloud-init-base all 25.4~1gcb12e00e-0ubuntu1 [625 kB] 68s Get:5 http://ftpmaster.internal/ubuntu resolute/main ppc64el cloud-init all 25.4~1gcb12e00e-0ubuntu1 [2114 B] 68s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-blinker all 1.9.0-2 [10.8 kB] 68s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-lazr.uri all 1.0.6-7 [13.8 kB] 68s dpkg-preconfigure: unable to re-open stdin: No such file or directory 68s Fetched 3748 kB in 1s (3647 kB/s) 69s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76557 files and directories currently installed.) 69s Preparing to unpack .../0-libapt-pkg7.0_3.1.11_ppc64el.deb ... 69s Unpacking libapt-pkg7.0:ppc64el (3.1.11) over (3.1.8ubuntu1) ... 69s Preparing to unpack .../1-apt_3.1.11_ppc64el.deb ... 69s Unpacking apt (3.1.11) over (3.1.8ubuntu1) ... 69s Preparing to unpack .../2-iprutils_2.4.19-4_ppc64el.deb ... 69s Unpacking iprutils (2.4.19-4) over (2.4.19-3build1) ... 69s Preparing to unpack .../3-cloud-init-base_25.4~1gcb12e00e-0ubuntu1_all.deb ... 69s Unpacking cloud-init-base (25.4~1gcb12e00e-0ubuntu1) over (25.3-0ubuntu1) ... 70s Preparing to unpack .../4-cloud-init_25.4~1gcb12e00e-0ubuntu1_all.deb ... 70s Unpacking cloud-init (25.4~1gcb12e00e-0ubuntu1) over (25.3-0ubuntu1) ... 70s Preparing to unpack .../5-python3-blinker_1.9.0-2_all.deb ... 70s Unpacking python3-blinker (1.9.0-2) over (1.9.0-1) ... 70s Preparing to unpack .../6-python3-lazr.uri_1.0.6-7_all.deb ... 70s Unpacking python3-lazr.uri (1.0.6-7) over (1.0.6-6) ... 70s Setting up iprutils (2.4.19-4) ... 72s Setting up python3-lazr.uri (1.0.6-7) ... 72s Setting up cloud-init-base (25.4~1gcb12e00e-0ubuntu1) ... 72s Encountered debconf setting for cloud-init-base/datasources. 74s Setting up libapt-pkg7.0:ppc64el (3.1.11) ... 74s Setting up python3-blinker (1.9.0-2) ... 74s Setting up apt (3.1.11) ... 74s Installing new version of config file /etc/apt/apt.conf.d/01-vendor-ubuntu ... 74s Setting up cloud-init (25.4~1gcb12e00e-0ubuntu1) ... 74s Processing triggers for rsyslog (8.2504.0-1ubuntu2) ... 75s Processing triggers for man-db (2.13.1-1) ... 77s Processing triggers for libc-bin (2.42-0ubuntu3) ... 77s autopkgtest [04:44:20]: upgrading testbed (apt dist-upgrade and autopurge) 78s Reading package lists... 78s Building dependency tree... 78s Reading state information... 79s Calculating upgrade... 79s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 79s Reading package lists... 79s Building dependency tree... 79s Reading state information... 79s Solving dependencies... 79s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 80s autopkgtest [04:44:23]: rebooting testbed after setup commands that affected boot 105s autopkgtest [04:44:48]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:02:41 UTC 2025 108s autopkgtest [04:44:51]: @@@@@@@@@@@@@@@@@@@@ apt-source trinityrnaseq 125s Get:1 http://ftpmaster.internal/ubuntu resolute/universe trinityrnaseq 2.15.2+dfsg-1 (dsc) [2605 B] 125s Get:2 http://ftpmaster.internal/ubuntu resolute/universe trinityrnaseq 2.15.2+dfsg-1 (tar) [305 MB] 125s Get:3 http://ftpmaster.internal/ubuntu resolute/universe trinityrnaseq 2.15.2+dfsg-1 (diff) [38.9 kB] 125s gpgv: Signature made Wed Aug 21 22:00:38 2024 UTC 125s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 125s gpgv: Can't check signature: No public key 125s dpkg-source: warning: cannot verify inline signature for ./trinityrnaseq_2.15.2+dfsg-1.dsc: no acceptable signature found 131s autopkgtest [04:45:14]: testing package trinityrnaseq version 2.15.2+dfsg-1 132s autopkgtest [04:45:15]: build not needed 149s autopkgtest [04:45:32]: test run-tests: preparing testbed 149s Reading package lists... 149s Building dependency tree... 149s Reading state information... 150s Solving dependencies... 150s Some packages could not be installed. This may mean that you have 150s requested an impossible situation or if you are using the unstable 150s distribution that some required packages have not yet been created 150s or been moved out of Incoming. 150s The following information may help to resolve the situation: 150s 150s The following packages have unmet dependencies: 150s satisfy:command-line : Depends: trinityrnaseq but it is not going to be installed 150s Depends: trinityrnaseq-examples but it is not going to be installed 150s Depends: r-cran-tidyverse but it is not going to be installed 150s Depends: libpicard-java but it is not going to be installed 150s Depends: salmon but it is not installable 150s Depends: r-bioc-edger but it is not going to be installed 150s Depends: r-bioc-deseq2 but it is not going to be installed 150s Depends: r-cran-cluster but it is not going to be installed 150s Depends: r-bioc-qvalue but it is not going to be installed 150s Depends: r-cran-fastcluster but it is not going to be installed 150s Depends: r-bioc-goseq but it is not going to be installed 150s Depends: r-cran-argparse but it is not going to be installed 150s Depends: r-cran-goplot but it is not going to be installed 150s Depends: r-cran-kernsmooth but it is not going to be installed 150s Depends: hisat2 but it is not going to be installed 150s Depends: python3-hisat2 but it is not going to be installed 150s Depends: r-bioc-dexseq but it is not going to be installed 150s E: Unable to satisfy dependencies. Reached two conflicting decisions: 150s 1. satisfy:command-line:ppc64el=1 is selected for install 150s 2. satisfy:command-line:ppc64el Depends salmon 150s but none of the choices are installable: 150s [no choices] 150s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from resolute-proposed 150s Reading package lists... 150s Building dependency tree... 150s Reading state information... 150s Solving dependencies... 150s Some packages could not be installed. This may mean that you have 150s requested an impossible situation or if you are using the unstable 150s distribution that some required packages have not yet been created 150s or been moved out of Incoming. 150s The following information may help to resolve the situation: 150s 150s The following packages have unmet dependencies: 150s satisfy:command-line : Depends: trinityrnaseq but it is not going to be installed 150s Depends: trinityrnaseq-examples but it is not going to be installed 150s Depends: r-cran-tidyverse but it is not going to be installed 150s Depends: libpicard-java but it is not going to be installed 150s Depends: salmon but it is not installable 150s Depends: r-bioc-edger but it is not going to be installed 150s Depends: r-bioc-deseq2 but it is not going to be installed 150s Depends: r-cran-cluster but it is not going to be installed 150s Depends: r-bioc-qvalue but it is not going to be installed 150s Depends: r-cran-fastcluster but it is not going to be installed 150s Depends: r-bioc-goseq but it is not going to be installed 150s Depends: r-cran-argparse but it is not going to be installed 150s Depends: r-cran-goplot but it is not going to be installed 150s Depends: r-cran-kernsmooth but it is not going to be installed 150s Depends: hisat2 but it is not going to be installed 150s Depends: python3-hisat2 but it is not going to be installed 150s Depends: r-bioc-dexseq but it is not going to be installed 150s E: Unable to satisfy dependencies. Reached two conflicting decisions: 150s 1. satisfy:command-line:ppc64el=1 is selected for install 150s 2. satisfy:command-line:ppc64el Depends salmon 150s but none of the choices are installable: 150s [no choices] 150s run-tests SKIP installation fails and skip-not-installable set 150s autopkgtest [04:45:33]: @@@@@@@@@@@@@@@@@@@@ summary 150s run-tests SKIP installation fails and skip-not-installable set