0s autopkgtest [11:29:18]: starting date and time: 2026-02-05 11:29:18+0000 0s autopkgtest [11:29:18]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [11:29:18]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.7jm3iex1/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade transtermhp --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.42-2ubuntu5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-ppc64el-38.secgroup --name adt-resolute-ppc64el-transtermhp-20260205-112918-juju-7f2275-prod-proposed-migration-environment-15-8f4b2315-3eda-4c2f-a7b2-2c2fc7cae58e --image adt/ubuntu-resolute-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 6s Creating nova instance adt-resolute-ppc64el-transtermhp-20260205-112918-juju-7f2275-prod-proposed-migration-environment-15-8f4b2315-3eda-4c2f-a7b2-2c2fc7cae58e from image adt/ubuntu-resolute-ppc64el-server-20260205.img (UUID f866c950-0b62-4023-bac6-0f13279e15ed)... 76s autopkgtest [11:30:34]: testbed dpkg architecture: ppc64el 80s autopkgtest [11:30:34]: testbed apt version: 3.1.14 80s autopkgtest [11:30:34]: @@@@@@@@@@@@@@@@@@@@ test bed setup 80s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 80s autopkgtest [11:30:35]: testbed release detected to be: None 80s autopkgtest [11:30:35]: updating testbed package index (apt update) 80s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 80s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 80s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 80s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 80s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [35.4 kB] 80s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [227 kB] 80s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1696 kB] 80s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el Packages [261 kB] 80s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el Packages [1492 kB] 80s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse ppc64el Packages [21.9 kB] 80s Fetched 3863 kB in 1s (3762 kB/s) 80s Reading package lists... 80s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 80s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 80s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 80s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 81s Reading package lists... 81s Reading package lists... 81s Building dependency tree... 81s Reading state information... 81s Calculating upgrade... 81s The following packages will be upgraded: 81s libc-bin libc-gconv-modules-extra libc6 locales pollinate 81s python3-referencing sed 81s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 81s Need to get 8612 kB of archives. 81s After this operation, 0 B of additional disk space will be used. 81s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el sed ppc64el 4.9-2build3 [211 kB] 81s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libc-gconv-modules-extra ppc64el 2.42-2ubuntu5 [1448 kB] 82s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libc6 ppc64el 2.42-2ubuntu5 [1913 kB] 82s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libc-bin ppc64el 2.42-2ubuntu5 [748 kB] 82s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el locales all 2.42-2ubuntu5 [4255 kB] 83s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el pollinate all 4.33-4ubuntu5 [14.0 kB] 83s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 83s dpkg-preconfigure: unable to re-open stdin: No such file or directory 83s Fetched 8612 kB in 1s (7067 kB/s) 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 84s Preparing to unpack .../sed_4.9-2build3_ppc64el.deb ... 84s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 85s Setting up sed (4.9-2build3) ... 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 85s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_ppc64el.deb ... 85s Unpacking libc-gconv-modules-extra:ppc64el (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 85s Setting up libc-gconv-modules-extra:ppc64el (2.42-2ubuntu5) ... 86s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 86s Preparing to unpack .../libc6_2.42-2ubuntu5_ppc64el.deb ... 86s Unpacking libc6:ppc64el (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 86s Setting up libc6:ppc64el (2.42-2ubuntu5) ... 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 87s Preparing to unpack .../libc-bin_2.42-2ubuntu5_ppc64el.deb ... 87s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 87s Setting up libc-bin (2.42-2ubuntu5) ... 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 88s Preparing to unpack .../locales_2.42-2ubuntu5_all.deb ... 88s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 89s Preparing to unpack .../pollinate_4.33-4ubuntu5_all.deb ... 89s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ... 89s Preparing to unpack .../python3-referencing_0.36.2-1ubuntu2_all.deb ... 89s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ... 89s Setting up locales (2.42-2ubuntu5) ... 90s Generating locales (this might take a while)... 91s en_US.UTF-8... done 91s Generation complete. 91s Setting up pollinate (4.33-4ubuntu5) ... 102s Setting up python3-referencing (0.36.2-1ubuntu2) ... 102s Processing triggers for man-db (2.13.1-1) ... 104s Processing triggers for install-info (7.2-5) ... 104s Processing triggers for systemd (259-1ubuntu3) ... 105s autopkgtest [11:31:03]: upgrading testbed (apt dist-upgrade and autopurge) 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 106s Calculating upgrade... 106s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 106s Solving dependencies... 106s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s autopkgtest [11:31:04]: rebooting testbed after setup commands that affected boot 150s autopkgtest [11:31:48]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:45:54 UTC 2026 152s autopkgtest [11:31:50]: @@@@@@@@@@@@@@@@@@@@ apt-source transtermhp 154s Get:1 http://ftpmaster.internal/ubuntu resolute/universe transtermhp 2.09-5build1 (dsc) [2094 B] 154s Get:2 http://ftpmaster.internal/ubuntu resolute/universe transtermhp 2.09-5build1 (tar) [71.3 kB] 154s Get:3 http://ftpmaster.internal/ubuntu resolute/universe transtermhp 2.09-5build1 (diff) [16.0 kB] 154s gpgv: Signature made Tue Dec 2 22:01:13 2025 UTC 154s gpgv: using RSA key 92FE4F8B40CADC4ECCD60C1F5961FDBE9C619809 154s gpgv: Can't check signature: No public key 154s dpkg-source: warning: cannot verify inline signature for ./transtermhp_2.09-5build1.dsc: no acceptable signature found 154s autopkgtest [11:31:52]: testing package transtermhp version 2.09-5build1 155s autopkgtest [11:31:53]: build not needed 155s autopkgtest [11:31:53]: test run-unit-test: preparing testbed 155s Reading package lists... 155s Building dependency tree... 155s Reading state information... 155s Solving dependencies... 155s The following NEW packages will be installed: 155s transtermhp 156s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 156s Need to get 122 kB of archives. 156s After this operation, 424 kB of additional disk space will be used. 156s Get:1 http://ftpmaster.internal/ubuntu resolute/universe ppc64el transtermhp ppc64el 2.09-5build1 [122 kB] 156s Fetched 122 kB in 0s (550 kB/s) 156s Selecting previously unselected package transtermhp. 156s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 156s Preparing to unpack .../transtermhp_2.09-5build1_ppc64el.deb ... 156s Unpacking transtermhp (2.09-5build1) ... 157s Setting up transtermhp (2.09-5build1) ... 157s Processing triggers for man-db (2.13.1-1) ... 159s autopkgtest [11:31:57]: test run-unit-test: [----------------------- 159s calibrate.sh 159s expterm.dat 159s infile.fasta 159s make_expterm.py 159s mfold_rna.sh 159s random_fasta.py 159s Test 1 159s NOTE: warnings about 'using version 1.0 confidence' are expected and OK. 159s TransTerm Options = 159s TransTermHP v2.08 (built on Dec 2 2025) 159s WARNING: USING VERSION 1.0 CONFIDENCE. 159s (use -p expterm.dat to use v2.0 confidence) 159s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 159s 159s --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 159s --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 159s --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 159s --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 159s --start-cut=0 --end-cut=25 159s 159s 159s warning: no examples in genes; can't compute conf. 159s 159s Each terminator entry starts in column 3 and is of the form: 159s term # start - end +/- regionconf hp tail | notes 159s Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. 159s Genes are interspersed, and start the first column. 159s 159s 159s Wall clock time = 0 seconds. 159s calibrate.sh: Running TransTerm on random sequence with %AT = 0.26 180s WARNING: USING VERSION 1.0 CONFIDENCE. 180s (use -p expterm.dat to use v2.0 confidence) 180s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 196s Seq: random (length 20000000, 14798 genes) 196s 197s Wall clock time = 17 seconds. 197s calibrate.sh: Running TransTerm on random sequence with %AT = 0.28 217s WARNING: USING VERSION 1.0 CONFIDENCE. 217s (use -p expterm.dat to use v2.0 confidence) 217s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 236s Seq: random (length 20000000, 14742 genes) 236s 237s Wall clock time = 19 seconds. 237s calibrate.sh: Running TransTerm on random sequence with %AT = 0.30 258s WARNING: USING VERSION 1.0 CONFIDENCE. 258s (use -p expterm.dat to use v2.0 confidence) 258s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 279s Seq: random (length 20000000, 14790 genes) 279s 280s Wall clock time = 22 seconds. 280s calibrate.sh: Running TransTerm on random sequence with %AT = 0.32 301s WARNING: USING VERSION 1.0 CONFIDENCE. 301s (use -p expterm.dat to use v2.0 confidence) 301s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 323s Seq: random (length 20000000, 14810 genes) 323s 324s Wall clock time = 23 seconds. 324s calibrate.sh: Running TransTerm on random sequence with %AT = 0.34 344s WARNING: USING VERSION 1.0 CONFIDENCE. 344s (use -p expterm.dat to use v2.0 confidence) 344s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 369s Seq: random (length 20000000, 14798 genes) 369s 370s Wall clock time = 25 seconds. 371s calibrate.sh: Running TransTerm on random sequence with %AT = 0.36 390s WARNING: USING VERSION 1.0 CONFIDENCE. 390s (use -p expterm.dat to use v2.0 confidence) 390s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 418s Seq: random (length 20000000, 14704 genes) 418s 419s Wall clock time = 29 seconds. 419s calibrate.sh: Running TransTerm on random sequence with %AT = 0.38 439s WARNING: USING VERSION 1.0 CONFIDENCE. 439s (use -p expterm.dat to use v2.0 confidence) 439s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 471s Seq: random (length 20000000, 14754 genes) 483s 483s Wall clock time = 31 seconds. 483s calibrate.sh: Running TransTerm on random sequence with %AT = 0.40 490s WARNING: USING VERSION 1.0 CONFIDENCE. 490s (use -p expterm.dat to use v2.0 confidence) 490s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 522s Seq: random (length 20000000, 14793 genes) 522s 523s Wall clock time = 33 seconds. 523s calibrate.sh: Running TransTerm on random sequence with %AT = 0.42 543s WARNING: USING VERSION 1.0 CONFIDENCE. 543s (use -p expterm.dat to use v2.0 confidence) 543s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 577s Seq: random (length 20000000, 14658 genes) 577s 578s Wall clock time = 35 seconds. 578s calibrate.sh: Running TransTerm on random sequence with %AT = 0.44 598s WARNING: USING VERSION 1.0 CONFIDENCE. 598s (use -p expterm.dat to use v2.0 confidence) 598s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 633s Seq: random (length 20000000, 14752 genes) 633s 634s Wall clock time = 36 seconds. 634s calibrate.sh: Running TransTerm on random sequence with %AT = 0.46 655s WARNING: USING VERSION 1.0 CONFIDENCE. 655s (use -p expterm.dat to use v2.0 confidence) 655s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 692s Seq: random (length 20000000, 14774 genes) 692s 693s Wall clock time = 38 seconds. 693s calibrate.sh: Running TransTerm on random sequence with %AT = 0.48 714s WARNING: USING VERSION 1.0 CONFIDENCE. 714s (use -p expterm.dat to use v2.0 confidence) 714s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 752s Seq: random (length 20000000, 14813 genes) 752s 753s Wall clock time = 40 seconds. 753s calibrate.sh: Running TransTerm on random sequence with %AT = 0.50 773s WARNING: USING VERSION 1.0 CONFIDENCE. 773s (use -p expterm.dat to use v2.0 confidence) 773s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 813s Seq: random (length 20000000, 14784 genes) 813s 814s Wall clock time = 41 seconds. 814s calibrate.sh: Running TransTerm on random sequence with %AT = 0.52 835s WARNING: USING VERSION 1.0 CONFIDENCE. 835s (use -p expterm.dat to use v2.0 confidence) 835s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 876s Seq: random (length 20000000, 14741 genes) 876s 877s Wall clock time = 42 seconds. 877s calibrate.sh: Running TransTerm on random sequence with %AT = 0.54 898s WARNING: USING VERSION 1.0 CONFIDENCE. 898s (use -p expterm.dat to use v2.0 confidence) 898s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 940s Seq: random (length 20000000, 14778 genes) 941s 941s Wall clock time = 43 seconds. 941s calibrate.sh: Running TransTerm on random sequence with %AT = 0.56 962s WARNING: USING VERSION 1.0 CONFIDENCE. 962s (use -p expterm.dat to use v2.0 confidence) 962s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1005s Seq: random (length 20000000, 14809 genes) 1005s 1006s Wall clock time = 44 seconds. 1006s calibrate.sh: Running TransTerm on random sequence with %AT = 0.58 1026s WARNING: USING VERSION 1.0 CONFIDENCE. 1026s (use -p expterm.dat to use v2.0 confidence) 1026s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1071s Seq: random (length 20000000, 14759 genes) 1071s 1071s Wall clock time = 46 seconds. 1071s calibrate.sh: Running TransTerm on random sequence with %AT = 0.60 1095s WARNING: USING VERSION 1.0 CONFIDENCE. 1096s (use -p expterm.dat to use v2.0 confidence) 1096s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1138s Seq: random (length 20000000, 14763 genes) 1138s 1138s Wall clock time = 46 seconds. 1138s calibrate.sh: Running TransTerm on random sequence with %AT = 0.62 1159s WARNING: USING VERSION 1.0 CONFIDENCE. 1159s (use -p expterm.dat to use v2.0 confidence) 1159s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1207s Seq: random (length 20000000, 14821 genes) 1207s 1207s Wall clock time = 49 seconds. 1207s calibrate.sh: Running TransTerm on random sequence with %AT = 0.64 1229s WARNING: USING VERSION 1.0 CONFIDENCE. 1230s (use -p expterm.dat to use v2.0 confidence) 1230s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1277s Seq: random (length 20000000, 14857 genes) 1277s 1278s Wall clock time = 49 seconds. 1278s calibrate.sh: Running TransTerm on random sequence with %AT = 0.66 1299s WARNING: USING VERSION 1.0 CONFIDENCE. 1299s (use -p expterm.dat to use v2.0 confidence) 1299s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1348s Seq: random (length 20000000, 14748 genes) 1348s 1349s Wall clock time = 50 seconds. 1349s calibrate.sh: Running TransTerm on random sequence with %AT = 0.68 1370s WARNING: USING VERSION 1.0 CONFIDENCE. 1370s (use -p expterm.dat to use v2.0 confidence) 1370s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1419s Seq: random (length 20000000, 14833 genes) 1419s 1420s Wall clock time = 50 seconds. 1420s calibrate.sh: Running TransTerm on random sequence with %AT = 0.70 1441s WARNING: USING VERSION 1.0 CONFIDENCE. 1441s (use -p expterm.dat to use v2.0 confidence) 1441s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1491s Seq: random (length 20000000, 14751 genes) 1491s 1492s Wall clock time = 51 seconds. 1492s calibrate.sh: Running TransTerm on random sequence with %AT = 0.72 1513s WARNING: USING VERSION 1.0 CONFIDENCE. 1513s (use -p expterm.dat to use v2.0 confidence) 1513s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1580s Seq: random (length 20000000, 14874 genes) 1580s 1580s Wall clock time = 51 seconds. 1580s calibrate.sh: Running TransTerm on random sequence with %AT = 0.74 1585s WARNING: USING VERSION 1.0 CONFIDENCE. 1587s (use -p expterm.dat to use v2.0 confidence) 1587s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1636s Seq: random (length 20000000, 14762 genes) 1637s 1637s Wall clock time = 51 seconds. 1637s calibrate.sh: Running TransTerm on random sequence with %AT = 0.76 1658s WARNING: USING VERSION 1.0 CONFIDENCE. 1658s (use -p expterm.dat to use v2.0 confidence) 1658s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1709s Seq: random (length 20000000, 14756 genes) 1709s 1710s Wall clock time = 52 seconds. 1710s calibrate.sh: Running TransTerm on random sequence with %AT = 0.78 1731s WARNING: USING VERSION 1.0 CONFIDENCE. 1732s (use -p expterm.dat to use v2.0 confidence) 1732s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1783s Seq: random (length 20000000, 14778 genes) 1783s 1784s Wall clock time = 53 seconds. 1784s calibrate.sh: Running TransTerm on random sequence with %AT = 0.80 1805s WARNING: USING VERSION 1.0 CONFIDENCE. 1805s (use -p expterm.dat to use v2.0 confidence) 1805s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1857s Seq: random (length 20000000, 14778 genes) 1857s 1858s Wall clock time = 53 seconds. 1858s calibrate.sh: Running TransTerm on random sequence with %AT = 0.82 1879s WARNING: USING VERSION 1.0 CONFIDENCE. 1879s (use -p expterm.dat to use v2.0 confidence) 1879s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1932s Seq: random (length 20000000, 14805 genes) 1932s 1933s Wall clock time = 54 seconds. 1933s calibrate.sh: Running TransTerm on random sequence with %AT = 0.84 1954s WARNING: USING VERSION 1.0 CONFIDENCE. 1976s (use -p expterm.dat to use v2.0 confidence) 1976s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 2008s Seq: random (length 20000000, 14751 genes) 2008s 2009s Wall clock time = 55 seconds. 2009s Creating distribution file in expterm.dat 2012s You must specify a background distribution file with '-p expterm.dat'. 2012s 2ndscore (Dec 2 2025) 2012s 2012s --gc=-2.1 --au=-1.3 --gu=-0.8 --mm=3.5 --gap=3.9 2012s --max-len=Done. You can run transterm with this background distribution using '-r expterm.dat' 2012s PASS 2012s Test 2 2012s 59 --max-loop=13 --min-loop=3 2012s --loop-penalty=4.1,4.9,4.4,4.7,5,5.1,5.2,5.3,5.4,5.5,5.6 2012s 2012s 1. Seq: 9258 (length 34) 2012s 2. Seq: 9361 (length 611) 2012s 3. Seq: 9365 (length 796) 2012s 4. Seq: 9371 (length 762) 2012s 5. Seq: 9544 (length 810) 2012s 6. Seq: 9598 (length 797) 2012s 7. Seq: 9606 (length 797) 2012s 8. Seq: 9615 (length 802) 2012s 9. Seq: 9685 (length 687) 2012s 10. Seq: 9785 (length 793) 2012s 11. Seq: 9796 (length 806) 2012s 12. Seq: 9913 (length 798) 2012s 13. Seq: 9986 (length 789) 2012s 14. Seq: 10090 (length 770) 2012s 15. Seq: 10116 (length 832) 2012s 16. Seq: 10141 (length 327) 2012s 17. Seq: 13616 (length 884) 2012s 18. Seq: 28377 (length 87) 2012s 19. Seq: 42254 (length 372) 2012s PASS 2012s autopkgtest [12:02:50]: test run-unit-test: -----------------------] 2013s run-unit-test PASS 2013s autopkgtest [12:02:51]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 2017s autopkgtest [12:02:55]: @@@@@@@@@@@@@@@@@@@@ summary 2017s run-unit-test PASS