0s autopkgtest [20:00:47]: starting date and time: 2026-01-23 20:00:47+0000 0s autopkgtest [20:00:47]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [20:00:47]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.x7o92vic/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:graphviz,src:apbs,src:binutils,src:ccls,src:cp2k,src:createrepo-c,src:gcc-11,src:gcc-12,src:gcc-13,src:gcc-14,src:gcc-15,src:gcc-snapshot,src:gdm3,src:hkl,src:hmmer,src:ktimetracker,src:libixion,src:liborcus,src:libpeas,src:libpeas2,src:libreoffice,src:libsndfile,src:libzstd,src:link-grammar,src:mosquitto,src:orthanc-python,src:psychopy,src:pyside2,src:python3-defaults,src:rumur,src:systemd,src:tifffile,src:vim --apt-upgrade snakemake --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=graphviz/14.1.1-2ubuntu3 apbs/3.4.1-7build1 binutils/2.45.50.20260119-1ubuntu1 ccls/0.20250815-0ubuntu1 cp2k/2025.2-3 createrepo-c/1.2.1-2build1 gcc-11/11.5.0-8ubuntu1 gcc-12/12.5.0-7ubuntu1 gcc-13/13.4.0-5ubuntu1 gcc-14/14.3.0-11ubuntu1 gcc-15/15.2.0-12ubuntu1 gcc-snapshot/1:20260121-1ubuntu1 gdm3/50~alpha.1-0ubuntu1 hkl/5.1.4-1 hmmer/3.4+dfsg-3 ktimetracker/4:6.0.0-1build1 libixion/0.20.0-6build1 liborcus/0.21.0-2build1 libpeas/1.36.0-8build1 libpeas2/2.2.0-2build1 libreoffice/4:25.8.4~rc2-0ubuntu2 libsndfile/1.2.2-4 libzstd/1.5.7+dfsg-3 link-grammar/5.13.0+dfsg-1build1 mosquitto/2.0.22-5 orthanc-python/7.0+ds-1build1 psychopy/2023.2.4+dfsg-4 pyside2/5.15.18-1 python3-defaults/3.14.2-1 rumur/2025.08.31-1 systemd/259-1ubuntu3 tifffile/20260114-1 vim/2:9.1.1882-1ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-ppc64el-1.secgroup --name adt-resolute-ppc64el-snakemake-20260123-200046-juju-7f2275-prod-proposed-migration-environment-2-598d189c-f624-4081-8654-1dc6582d7949 --image adt/ubuntu-resolute-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-ppc64el-snakemake-20260123-200046-juju-7f2275-prod-proposed-migration-environment-2-598d189c-f624-4081-8654-1dc6582d7949 from image adt/ubuntu-resolute-ppc64el-server-20260123.img (UUID 3dff1a46-d1c8-44ff-849b-7d35415debc1)... 52s autopkgtest [20:01:39]: testbed dpkg architecture: ppc64el 52s autopkgtest [20:01:39]: testbed apt version: 3.1.13 52s autopkgtest [20:01:39]: @@@@@@@@@@@@@@@@@@@@ test bed setup 52s autopkgtest [20:01:39]: testbed release detected to be: None 53s autopkgtest [20:01:40]: updating testbed package index (apt update) 53s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 53s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 53s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 53s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 53s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 53s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [23.6 kB] 53s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1018 kB] 54s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [97.3 kB] 54s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el Packages [114 kB] 54s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el Packages [862 kB] 54s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse ppc64el Packages [9160 B] 54s Fetched 2251 kB in 1s (3685 kB/s) 55s Reading package lists... 55s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 55s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 55s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 55s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 56s Reading package lists... 56s Reading package lists... 56s Building dependency tree... 56s Reading state information... 56s Calculating upgrade... 57s The following packages were automatically installed and are no longer required: 57s python3.13 python3.13-minimal 57s Use 'sudo apt autoremove' to remove them. 57s The following NEW packages will be installed: 57s libpython3.14-minimal libpython3.14-stdlib libsframe3 python3.14 57s python3.14-minimal 57s The following packages will be upgraded: 57s binutils binutils-common binutils-powerpc64le-linux-gnu gcc-15-base 57s libatomic1 libbinutils libctf-nobfd0 libctf0 libgcc-s1 libnss-systemd 57s libpam-systemd libplymouth5 libpython3-stdlib libstdc++6 libsystemd-shared 57s libsystemd0 libtasn1-6 libudev1 libzstd1 plymouth plymouth-theme-ubuntu-text 57s python3 python3-gdbm python3-jaraco.context python3-minimal systemd 57s systemd-cryptsetup systemd-resolved systemd-sysv systemd-userdbd udev 57s vim-common vim-tiny xxd zstd 57s 35 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. 57s Need to get 23.5 MB of archives. 57s After this operation, 27.9 MB of additional disk space will be used. 57s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpython3.14-minimal ppc64el 3.14.2-1 [921 kB] 57s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.14-minimal ppc64el 3.14.2-1 [2712 kB] 57s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-minimal ppc64el 3.14.2-1 [28.2 kB] 57s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3 ppc64el 3.14.2-1 [22.9 kB] 57s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libstdc++6 ppc64el 15.2.0-12ubuntu1 [922 kB] 57s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libatomic1 ppc64el 15.2.0-12ubuntu1 [11.0 kB] 57s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el gcc-15-base ppc64el 15.2.0-12ubuntu1 [59.6 kB] 57s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libgcc-s1 ppc64el 15.2.0-12ubuntu1 [40.2 kB] 57s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libzstd1 ppc64el 1.5.7+dfsg-3 [430 kB] 57s Get:10 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpython3.14-stdlib ppc64el 3.14.2-1 [2444 kB] 57s Get:11 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.14 ppc64el 3.14.2-1 [816 kB] 57s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libpython3-stdlib ppc64el 3.14.2-1 [10.9 kB] 57s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el systemd-userdbd ppc64el 259-1ubuntu3 [54.6 kB] 57s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libnss-systemd ppc64el 259-1ubuntu3 [347 kB] 57s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libsystemd0 ppc64el 259-1ubuntu3 [703 kB] 57s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el systemd-sysv ppc64el 259-1ubuntu3 [9250 B] 57s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el systemd-resolved ppc64el 259-1ubuntu3 [344 kB] 57s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libpam-systemd ppc64el 259-1ubuntu3 [372 kB] 57s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libsystemd-shared ppc64el 259-1ubuntu3 [2884 kB] 58s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el systemd ppc64el 259-1ubuntu3 [3301 kB] 58s Get:21 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el systemd-cryptsetup ppc64el 259-1ubuntu3 [133 kB] 58s Get:22 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el udev ppc64el 259-1ubuntu3 [1505 kB] 58s Get:23 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libudev1 ppc64el 259-1ubuntu3 [252 kB] 58s Get:24 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtasn1-6 ppc64el 4.21.0-2 [58.0 kB] 58s Get:25 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el vim-tiny ppc64el 2:9.1.1882-1ubuntu2 [1180 kB] 58s Get:26 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el vim-common all 2:9.1.1882-1ubuntu2 [402 kB] 58s Get:27 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el xxd ppc64el 2:9.1.1882-1ubuntu2 [71.6 kB] 58s Get:28 http://ftpmaster.internal/ubuntu resolute/main ppc64el libplymouth5 ppc64el 24.004.60+git20250831.4a3c171d-0ubuntu5 [174 kB] 58s Get:29 http://ftpmaster.internal/ubuntu resolute/main ppc64el plymouth-theme-ubuntu-text ppc64el 24.004.60+git20250831.4a3c171d-0ubuntu5 [11.2 kB] 58s Get:30 http://ftpmaster.internal/ubuntu resolute/main ppc64el plymouth ppc64el 24.004.60+git20250831.4a3c171d-0ubuntu5 [156 kB] 58s Get:31 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-gdbm ppc64el 3.14.2-1 [11.1 kB] 58s Get:32 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libctf0 ppc64el 2.45.50.20260119-1ubuntu1 [118 kB] 58s Get:33 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libctf-nobfd0 ppc64el 2.45.50.20260119-1ubuntu1 [121 kB] 58s Get:34 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.45.50.20260119-1ubuntu1 [1030 kB] 58s Get:35 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libbinutils ppc64el 2.45.50.20260119-1ubuntu1 [722 kB] 58s Get:36 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el binutils ppc64el 2.45.50.20260119-1ubuntu1 [3266 B] 58s Get:37 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el binutils-common ppc64el 2.45.50.20260119-1ubuntu1 [222 kB] 58s Get:38 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libsframe3 ppc64el 2.45.50.20260119-1ubuntu1 [23.7 kB] 58s Get:39 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-jaraco.context all 6.0.1-2 [8198 B] 58s Get:40 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el zstd ppc64el 1.5.7+dfsg-3 [845 kB] 58s dpkg-preconfigure: unable to re-open stdin: No such file or directory 58s Fetched 23.5 MB in 1s (17.4 MB/s) 58s Selecting previously unselected package libpython3.14-minimal:ppc64el. 59s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 120821 files and directories currently installed.) 59s Preparing to unpack .../libpython3.14-minimal_3.14.2-1_ppc64el.deb ... 59s Unpacking libpython3.14-minimal:ppc64el (3.14.2-1) ... 59s Selecting previously unselected package python3.14-minimal. 59s Preparing to unpack .../python3.14-minimal_3.14.2-1_ppc64el.deb ... 59s Unpacking python3.14-minimal (3.14.2-1) ... 59s Setting up libpython3.14-minimal:ppc64el (3.14.2-1) ... 59s Setting up python3.14-minimal (3.14.2-1) ... 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121163 files and directories currently installed.) 60s Preparing to unpack .../python3-minimal_3.14.2-1_ppc64el.deb ... 60s Unpacking python3-minimal (3.14.2-1) over (3.13.9-3) ... 60s Setting up python3-minimal (3.14.2-1) ... 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121163 files and directories currently installed.) 60s Preparing to unpack .../python3_3.14.2-1_ppc64el.deb ... 60s running python pre-rtupdate hooks for python3.14... 60s Unpacking python3 (3.14.2-1) over (3.13.9-3) ... 60s Preparing to unpack .../libstdc++6_15.2.0-12ubuntu1_ppc64el.deb ... 60s Unpacking libstdc++6:ppc64el (15.2.0-12ubuntu1) over (15.2.0-11ubuntu1) ... 60s Preparing to unpack .../libatomic1_15.2.0-12ubuntu1_ppc64el.deb ... 60s Unpacking libatomic1:ppc64el (15.2.0-12ubuntu1) over (15.2.0-11ubuntu1) ... 61s Preparing to unpack .../gcc-15-base_15.2.0-12ubuntu1_ppc64el.deb ... 61s Unpacking gcc-15-base:ppc64el (15.2.0-12ubuntu1) over (15.2.0-11ubuntu1) ... 61s Setting up gcc-15-base:ppc64el (15.2.0-12ubuntu1) ... 61s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121164 files and directories currently installed.) 61s Preparing to unpack .../libgcc-s1_15.2.0-12ubuntu1_ppc64el.deb ... 61s Unpacking libgcc-s1:ppc64el (15.2.0-12ubuntu1) over (15.2.0-11ubuntu1) ... 61s Setting up libgcc-s1:ppc64el (15.2.0-12ubuntu1) ... 61s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121164 files and directories currently installed.) 61s Preparing to unpack .../libzstd1_1.5.7+dfsg-3_ppc64el.deb ... 61s Unpacking libzstd1:ppc64el (1.5.7+dfsg-3) over (1.5.7+dfsg-2) ... 61s Setting up libzstd1:ppc64el (1.5.7+dfsg-3) ... 61s Selecting previously unselected package libpython3.14-stdlib:ppc64el. 61s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121164 files and directories currently installed.) 61s Preparing to unpack .../0-libpython3.14-stdlib_3.14.2-1_ppc64el.deb ... 61s Unpacking libpython3.14-stdlib:ppc64el (3.14.2-1) ... 61s Selecting previously unselected package python3.14. 61s Preparing to unpack .../1-python3.14_3.14.2-1_ppc64el.deb ... 61s Unpacking python3.14 (3.14.2-1) ... 61s Preparing to unpack .../2-libpython3-stdlib_3.14.2-1_ppc64el.deb ... 61s Unpacking libpython3-stdlib:ppc64el (3.14.2-1) over (3.13.9-3) ... 61s Preparing to unpack .../3-systemd-userdbd_259-1ubuntu3_ppc64el.deb ... 61s Unpacking systemd-userdbd (259-1ubuntu3) over (259-1ubuntu2) ... 61s Preparing to unpack .../4-libnss-systemd_259-1ubuntu3_ppc64el.deb ... 61s Unpacking libnss-systemd:ppc64el (259-1ubuntu3) over (259-1ubuntu2) ... 62s Preparing to unpack .../5-libsystemd0_259-1ubuntu3_ppc64el.deb ... 62s Unpacking libsystemd0:ppc64el (259-1ubuntu3) over (259-1ubuntu2) ... 62s Setting up libsystemd0:ppc64el (259-1ubuntu3) ... 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121595 files and directories currently installed.) 62s Preparing to unpack .../systemd-sysv_259-1ubuntu3_ppc64el.deb ... 62s Unpacking systemd-sysv (259-1ubuntu3) over (259-1ubuntu2) ... 62s Preparing to unpack .../systemd-resolved_259-1ubuntu3_ppc64el.deb ... 62s Unpacking systemd-resolved (259-1ubuntu3) over (259-1ubuntu2) ... 62s Preparing to unpack .../libpam-systemd_259-1ubuntu3_ppc64el.deb ... 62s Unpacking libpam-systemd:ppc64el (259-1ubuntu3) over (259-1ubuntu2) ... 62s Preparing to unpack .../libsystemd-shared_259-1ubuntu3_ppc64el.deb ... 62s Unpacking libsystemd-shared:ppc64el (259-1ubuntu3) over (259-1ubuntu2) ... 63s Setting up libsystemd-shared:ppc64el (259-1ubuntu3) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121595 files and directories currently installed.) 63s Preparing to unpack .../systemd_259-1ubuntu3_ppc64el.deb ... 63s Unpacking systemd (259-1ubuntu3) over (259-1ubuntu2) ... 63s Preparing to unpack .../systemd-cryptsetup_259-1ubuntu3_ppc64el.deb ... 63s Unpacking systemd-cryptsetup (259-1ubuntu3) over (259-1ubuntu2) ... 63s Preparing to unpack .../udev_259-1ubuntu3_ppc64el.deb ... 63s Unpacking udev (259-1ubuntu3) over (259-1ubuntu2) ... 63s Preparing to unpack .../libudev1_259-1ubuntu3_ppc64el.deb ... 63s Unpacking libudev1:ppc64el (259-1ubuntu3) over (259-1ubuntu2) ... 63s Setting up libudev1:ppc64el (259-1ubuntu3) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121595 files and directories currently installed.) 63s Preparing to unpack .../00-libtasn1-6_4.21.0-2_ppc64el.deb ... 63s Unpacking libtasn1-6:ppc64el (4.21.0-2) over (4.20.0-2ubuntu1) ... 64s Preparing to unpack .../01-vim-tiny_2%3a9.1.1882-1ubuntu2_ppc64el.deb ... 64s Unpacking vim-tiny (2:9.1.1882-1ubuntu2) over (2:9.1.1882-1ubuntu1) ... 64s Preparing to unpack .../02-vim-common_2%3a9.1.1882-1ubuntu2_all.deb ... 64s Unpacking vim-common (2:9.1.1882-1ubuntu2) over (2:9.1.1882-1ubuntu1) ... 64s Preparing to unpack .../03-xxd_2%3a9.1.1882-1ubuntu2_ppc64el.deb ... 64s Unpacking xxd (2:9.1.1882-1ubuntu2) over (2:9.1.1882-1ubuntu1) ... 64s Preparing to unpack .../04-libplymouth5_24.004.60+git20250831.4a3c171d-0ubuntu5_ppc64el.deb ... 64s Unpacking libplymouth5:ppc64el (24.004.60+git20250831.4a3c171d-0ubuntu5) over (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 64s Preparing to unpack .../05-plymouth-theme-ubuntu-text_24.004.60+git20250831.4a3c171d-0ubuntu5_ppc64el.deb ... 64s Unpacking plymouth-theme-ubuntu-text (24.004.60+git20250831.4a3c171d-0ubuntu5) over (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 64s Preparing to unpack .../06-plymouth_24.004.60+git20250831.4a3c171d-0ubuntu5_ppc64el.deb ... 64s Unpacking plymouth (24.004.60+git20250831.4a3c171d-0ubuntu5) over (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 64s Preparing to unpack .../07-python3-gdbm_3.14.2-1_ppc64el.deb ... 64s Unpacking python3-gdbm (3.14.2-1) over (3.13.9-3) ... 64s Preparing to unpack .../08-libctf0_2.45.50.20260119-1ubuntu1_ppc64el.deb ... 64s Unpacking libctf0:ppc64el (2.45.50.20260119-1ubuntu1) over (2.45.50.20251209-1ubuntu1) ... 64s Preparing to unpack .../09-libctf-nobfd0_2.45.50.20260119-1ubuntu1_ppc64el.deb ... 64s Unpacking libctf-nobfd0:ppc64el (2.45.50.20260119-1ubuntu1) over (2.45.50.20251209-1ubuntu1) ... 64s Preparing to unpack .../10-binutils-powerpc64le-linux-gnu_2.45.50.20260119-1ubuntu1_ppc64el.deb ... 64s Unpacking binutils-powerpc64le-linux-gnu (2.45.50.20260119-1ubuntu1) over (2.45.50.20251209-1ubuntu1) ... 65s Preparing to unpack .../11-libbinutils_2.45.50.20260119-1ubuntu1_ppc64el.deb ... 65s Unpacking libbinutils:ppc64el (2.45.50.20260119-1ubuntu1) over (2.45.50.20251209-1ubuntu1) ... 65s Preparing to unpack .../12-binutils_2.45.50.20260119-1ubuntu1_ppc64el.deb ... 65s Unpacking binutils (2.45.50.20260119-1ubuntu1) over (2.45.50.20251209-1ubuntu1) ... 65s Preparing to unpack .../13-binutils-common_2.45.50.20260119-1ubuntu1_ppc64el.deb ... 65s Unpacking binutils-common:ppc64el (2.45.50.20260119-1ubuntu1) over (2.45.50.20251209-1ubuntu1) ... 65s Selecting previously unselected package libsframe3:ppc64el. 65s Preparing to unpack .../14-libsframe3_2.45.50.20260119-1ubuntu1_ppc64el.deb ... 65s Unpacking libsframe3:ppc64el (2.45.50.20260119-1ubuntu1) ... 65s Preparing to unpack .../15-python3-jaraco.context_6.0.1-2_all.deb ... 65s Unpacking python3-jaraco.context (6.0.1-2) over (6.0.1-1build1) ... 65s Preparing to unpack .../16-zstd_1.5.7+dfsg-3_ppc64el.deb ... 65s Unpacking zstd (1.5.7+dfsg-3) over (1.5.7+dfsg-2) ... 65s Setting up libpython3.14-stdlib:ppc64el (3.14.2-1) ... 65s Setting up binutils-common:ppc64el (2.45.50.20260119-1ubuntu1) ... 66s Setting up libsframe3:ppc64el (2.45.50.20260119-1ubuntu1) ... 66s Setting up libctf-nobfd0:ppc64el (2.45.50.20260119-1ubuntu1) ... 66s Setting up libnss-systemd:ppc64el (259-1ubuntu3) ... 66s Setting up systemd (259-1ubuntu3) ... 66s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 66s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 67s Setting up xxd (2:9.1.1882-1ubuntu2) ... 67s Setting up vim-common (2:9.1.1882-1ubuntu2) ... 67s Setting up systemd-cryptsetup (259-1ubuntu3) ... 67s Setting up libatomic1:ppc64el (15.2.0-12ubuntu1) ... 67s Setting up udev (259-1ubuntu3) ... 68s Setting up libplymouth5:ppc64el (24.004.60+git20250831.4a3c171d-0ubuntu5) ... 68s Setting up libtasn1-6:ppc64el (4.21.0-2) ... 68s Setting up python3.14 (3.14.2-1) ... 69s Setting up libbinutils:ppc64el (2.45.50.20260119-1ubuntu1) ... 69s Setting up libstdc++6:ppc64el (15.2.0-12ubuntu1) ... 69s Setting up libpython3-stdlib:ppc64el (3.14.2-1) ... 69s Setting up systemd-resolved (259-1ubuntu3) ... 70s Could not execute systemctl: at /usr/bin/deb-systemd-invoke line 148. 70s Setting up libctf0:ppc64el (2.45.50.20260119-1ubuntu1) ... 70s Setting up systemd-userdbd (259-1ubuntu3) ... 70s Setting up systemd-sysv (259-1ubuntu3) ... 70s Setting up python3-gdbm (3.14.2-1) ... 70s Setting up plymouth (24.004.60+git20250831.4a3c171d-0ubuntu5) ... 70s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 71s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 71s Setting up python3 (3.14.2-1) ... 71s running python rtupdate hooks for python3.14... 71s running python post-rtupdate hooks for python3.14... 71s Setting up vim-tiny (2:9.1.1882-1ubuntu2) ... 71s Setting up libpam-systemd:ppc64el (259-1ubuntu3) ... 71s Setting up binutils-powerpc64le-linux-gnu (2.45.50.20260119-1ubuntu1) ... 71s Setting up zstd (1.5.7+dfsg-3) ... 71s Setting up python3-jaraco.context (6.0.1-2) ... 71s Setting up binutils (2.45.50.20260119-1ubuntu1) ... 72s Processing triggers for dbus (1.16.2-2ubuntu2) ... 72s Processing triggers for shared-mime-info (2.4-5build2) ... 75s Processing triggers for procps (2:4.0.4-9ubuntu1) ... 75s Processing triggers for initramfs-tools (0.150ubuntu7) ... 75s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 82s Processing triggers for libc-bin (2.42-2ubuntu4) ... 82s Processing triggers for man-db (2.13.1-1) ... 84s Setting up plymouth-theme-ubuntu-text (24.004.60+git20250831.4a3c171d-0ubuntu5) ... 84s Processing triggers for initramfs-tools (0.150ubuntu7) ... 84s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 89s autopkgtest [20:02:16]: upgrading testbed (apt dist-upgrade and autopurge) 89s Reading package lists... 89s Building dependency tree... 89s Reading state information... 89s Calculating upgrade... 89s The following packages were automatically installed and are no longer required: 89s python3.13 python3.13-minimal 89s Use 'sudo apt autoremove' to remove them. 89s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 89s Reading package lists... 90s Building dependency tree... 90s Reading state information... 90s Solving dependencies... 90s The following packages will be REMOVED: 90s python3.13* python3.13-minimal* 90s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 90s After this operation, 9077 kB disk space will be freed. 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121595 files and directories currently installed.) 90s Removing python3.13 (3.13.11-1) ... 90s Removing python3.13-minimal (3.13.11-1) ... 91s Processing triggers for man-db (2.13.1-1) ... 92s Processing triggers for systemd (259-1ubuntu3) ... 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121568 files and directories currently installed.) 92s Purging configuration files for python3.13-minimal (3.13.11-1) ... 92s autopkgtest [20:02:19]: rebooting testbed after setup commands that affected boot 130s autopkgtest [20:02:57]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:45:54 UTC 2026 132s autopkgtest [20:02:59]: @@@@@@@@@@@@@@@@@@@@ apt-source snakemake 135s Get:1 http://ftpmaster.internal/ubuntu resolute/universe snakemake 7.32.4-8.1 (dsc) [3330 B] 135s Get:2 http://ftpmaster.internal/ubuntu resolute/universe snakemake 7.32.4-8.1 (tar) [8886 kB] 135s Get:3 http://ftpmaster.internal/ubuntu resolute/universe snakemake 7.32.4-8.1 (diff) [29.9 kB] 135s gpgv: Signature made Mon Dec 29 15:32:14 2025 UTC 135s gpgv: using RSA key 406220C8B8552802378CCE411F5C7A8B45564314 135s gpgv: issuer "bage@debian.org" 135s gpgv: Can't check signature: No public key 135s dpkg-source: warning: cannot verify inline signature for ./snakemake_7.32.4-8.1.dsc: no acceptable signature found 135s autopkgtest [20:03:02]: testing package snakemake version 7.32.4-8.1 136s autopkgtest [20:03:03]: build not needed 139s autopkgtest [20:03:06]: test command1: preparing testbed 139s Reading package lists... 139s Building dependency tree... 139s Reading state information... 139s Solving dependencies... 139s The following NEW packages will be installed: 139s coinor-cbc coinor-libcbc3.1 coinor-libcgl1 coinor-libclp1 139s coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common 139s fonts-glyphicons-halflings git git-man libblas3 libdatrie1 liberror-perl 139s libgfortran5 libjs-bootstrap libjs-jquery liblapack3 python3-configargparse 139s python3-connection-pool python3-datrie python3-decorator python3-docutils 139s python3-dpath python3-fastjsonschema python3-git python3-gitdb 139s python3-humanfriendly python3-jupyter-core python3-nbformat python3-plac 139s python3-platformdirs python3-psutil python3-pulp python3-retry 139s python3-roman-numerals python3-smart-open python3-smmap python3-stopit 139s python3-tabulate python3-throttler python3-toposort python3-traitlets 139s python3-wrapt python3-yte sgml-base snakemake xml-core 139s 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. 139s Need to get 18.9 MB of archives. 139s After this operation, 72.5 MB of additional disk space will be used. 139s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el libblas3 ppc64el 3.12.1-7ubuntu1 [291 kB] 139s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libgfortran5 ppc64el 15.2.0-12ubuntu1 [620 kB] 140s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblapack3 ppc64el 3.12.1-7ubuntu1 [2960 kB] 140s Get:4 http://ftpmaster.internal/ubuntu resolute/universe ppc64el coinor-libcoinutils3v5 ppc64el 2.11.12+ds-1 [651 kB] 141s Get:5 http://ftpmaster.internal/ubuntu resolute/universe ppc64el coinor-libosi1v5 ppc64el 0.108.11+ds-1 [309 kB] 141s Get:6 http://ftpmaster.internal/ubuntu resolute/universe ppc64el coinor-libclp1 ppc64el 1.17.10+ds-1build1 [1090 kB] 141s Get:7 http://ftpmaster.internal/ubuntu resolute/universe ppc64el coinor-libcgl1 ppc64el 0.60.9+ds-1build1 [506 kB] 141s Get:8 http://ftpmaster.internal/ubuntu resolute/universe ppc64el coinor-libcbc3.1 ppc64el 2.10.12+ds-1build1 [856 kB] 141s Get:9 http://ftpmaster.internal/ubuntu resolute/main ppc64el sgml-base all 1.31+nmu1 [11.0 kB] 141s Get:10 http://ftpmaster.internal/ubuntu resolute/main ppc64el xml-core all 0.19build1 [20.3 kB] 141s Get:11 http://ftpmaster.internal/ubuntu resolute/main ppc64el docutils-common all 0.22.4+dfsg-1 [130 kB] 141s Get:12 http://ftpmaster.internal/ubuntu resolute/universe ppc64el fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 141s Get:13 http://ftpmaster.internal/ubuntu resolute/main ppc64el liberror-perl all 0.17030-1 [23.5 kB] 141s Get:14 http://ftpmaster.internal/ubuntu resolute/main ppc64el git-man all 1:2.51.0-1ubuntu1 [1179 kB] 141s Get:15 http://ftpmaster.internal/ubuntu resolute/main ppc64el git ppc64el 1:2.51.0-1ubuntu1 [7646 kB] 142s Get:16 http://ftpmaster.internal/ubuntu resolute/main ppc64el libdatrie1 ppc64el 0.2.14-1 [22.7 kB] 142s Get:17 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 142s Get:18 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 142s Get:19 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-configargparse all 1.7-2 [31.7 kB] 142s Get:20 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-connection-pool all 0.0.3-2build1 [5792 B] 142s Get:21 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-datrie ppc64el 0.8.3-2 [204 kB] 142s Get:22 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-decorator all 5.2.1-2 [28.1 kB] 142s Get:23 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-roman-numerals all 4.1.0-1 [8660 B] 142s Get:24 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-docutils all 0.22.4+dfsg-1 [439 kB] 142s Get:25 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-dpath all 2.2.0-2 [20.3 kB] 142s Get:26 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-fastjsonschema all 2.21.1-1 [20.4 kB] 142s Get:27 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-smmap all 6.0.0-1build1 [20.7 kB] 142s Get:28 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-gitdb all 4.0.12-1 [46.4 kB] 142s Get:29 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-git all 3.1.46-1 [149 kB] 142s Get:30 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-humanfriendly all 10.0-6build1 [70.9 kB] 142s Get:31 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-platformdirs all 4.5.1-1 [17.1 kB] 142s Get:32 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-traitlets all 5.14.3+really5.14.3-2 [71.7 kB] 142s Get:33 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-jupyter-core all 5.9.1-1 [28.9 kB] 142s Get:34 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-nbformat all 5.10.4-1 [39.2 kB] 142s Get:35 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-plac all 1.4.3-2 [63.2 kB] 142s Get:36 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-psutil ppc64el 7.1.0-1ubuntu1 [192 kB] 142s Get:37 http://ftpmaster.internal/ubuntu resolute/universe ppc64el coinor-cbc ppc64el 2.10.12+ds-1build1 [14.2 kB] 142s Get:38 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pulp all 2.7.0+dfsg-4 [71.4 kB] 142s Get:39 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-retry all 0.9.2-5 [6160 B] 142s Get:40 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-wrapt ppc64el 1.17.3-3 [42.0 kB] 142s Get:41 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-smart-open all 7.5.0-1 [56.9 kB] 142s Get:42 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-stopit all 1.1.2-3 [12.8 kB] 142s Get:43 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-tabulate all 0.9.0-1build1 [45.4 kB] 142s Get:44 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-throttler all 1.2.2-4ubuntu1 [7758 B] 142s Get:45 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-toposort all 1.10-2 [6348 B] 142s Get:46 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-yte all 1.5.4-1 [12.0 kB] 142s Get:47 http://ftpmaster.internal/ubuntu resolute/universe ppc64el snakemake all 7.32.4-8.1 [275 kB] 142s Fetched 18.9 MB in 3s (7211 kB/s) 142s Selecting previously unselected package libblas3:ppc64el. 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121570 files and directories currently installed.) 143s Preparing to unpack .../00-libblas3_3.12.1-7ubuntu1_ppc64el.deb ... 143s Unpacking libblas3:ppc64el (3.12.1-7ubuntu1) ... 143s Selecting previously unselected package libgfortran5:ppc64el. 143s Preparing to unpack .../01-libgfortran5_15.2.0-12ubuntu1_ppc64el.deb ... 143s Unpacking libgfortran5:ppc64el (15.2.0-12ubuntu1) ... 143s Selecting previously unselected package liblapack3:ppc64el. 143s Preparing to unpack .../02-liblapack3_3.12.1-7ubuntu1_ppc64el.deb ... 143s Unpacking liblapack3:ppc64el (3.12.1-7ubuntu1) ... 143s Selecting previously unselected package coinor-libcoinutils3v5:ppc64el. 143s Preparing to unpack .../03-coinor-libcoinutils3v5_2.11.12+ds-1_ppc64el.deb ... 143s Unpacking coinor-libcoinutils3v5:ppc64el (2.11.12+ds-1) ... 143s Selecting previously unselected package coinor-libosi1v5:ppc64el. 143s Preparing to unpack .../04-coinor-libosi1v5_0.108.11+ds-1_ppc64el.deb ... 143s Unpacking coinor-libosi1v5:ppc64el (0.108.11+ds-1) ... 143s Selecting previously unselected package coinor-libclp1:ppc64el. 143s Preparing to unpack .../05-coinor-libclp1_1.17.10+ds-1build1_ppc64el.deb ... 143s Unpacking coinor-libclp1:ppc64el (1.17.10+ds-1build1) ... 143s Selecting previously unselected package coinor-libcgl1:ppc64el. 143s Preparing to unpack .../06-coinor-libcgl1_0.60.9+ds-1build1_ppc64el.deb ... 143s Unpacking coinor-libcgl1:ppc64el (0.60.9+ds-1build1) ... 143s Selecting previously unselected package coinor-libcbc3.1:ppc64el. 143s Preparing to unpack .../07-coinor-libcbc3.1_2.10.12+ds-1build1_ppc64el.deb ... 143s Unpacking coinor-libcbc3.1:ppc64el (2.10.12+ds-1build1) ... 143s Selecting previously unselected package sgml-base. 143s Preparing to unpack .../08-sgml-base_1.31+nmu1_all.deb ... 143s Unpacking sgml-base (1.31+nmu1) ... 143s Selecting previously unselected package xml-core. 143s Preparing to unpack .../09-xml-core_0.19build1_all.deb ... 143s Unpacking xml-core (0.19build1) ... 143s Selecting previously unselected package docutils-common. 143s Preparing to unpack .../10-docutils-common_0.22.4+dfsg-1_all.deb ... 143s Unpacking docutils-common (0.22.4+dfsg-1) ... 143s Selecting previously unselected package fonts-glyphicons-halflings. 143s Preparing to unpack .../11-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 143s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 143s Selecting previously unselected package liberror-perl. 143s Preparing to unpack .../12-liberror-perl_0.17030-1_all.deb ... 143s Unpacking liberror-perl (0.17030-1) ... 143s Selecting previously unselected package git-man. 143s Preparing to unpack .../13-git-man_1%3a2.51.0-1ubuntu1_all.deb ... 143s Unpacking git-man (1:2.51.0-1ubuntu1) ... 143s Selecting previously unselected package git. 143s Preparing to unpack .../14-git_1%3a2.51.0-1ubuntu1_ppc64el.deb ... 143s Unpacking git (1:2.51.0-1ubuntu1) ... 143s Selecting previously unselected package libdatrie1:ppc64el. 143s Preparing to unpack .../15-libdatrie1_0.2.14-1_ppc64el.deb ... 143s Unpacking libdatrie1:ppc64el (0.2.14-1) ... 143s Selecting previously unselected package libjs-bootstrap. 143s Preparing to unpack .../16-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 143s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 143s Selecting previously unselected package libjs-jquery. 143s Preparing to unpack .../17-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 143s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 143s Selecting previously unselected package python3-configargparse. 143s Preparing to unpack .../18-python3-configargparse_1.7-2_all.deb ... 143s Unpacking python3-configargparse (1.7-2) ... 143s Selecting previously unselected package python3-connection-pool. 143s Preparing to unpack .../19-python3-connection-pool_0.0.3-2build1_all.deb ... 143s Unpacking python3-connection-pool (0.0.3-2build1) ... 143s Selecting previously unselected package python3-datrie. 143s Preparing to unpack .../20-python3-datrie_0.8.3-2_ppc64el.deb ... 143s Unpacking python3-datrie (0.8.3-2) ... 143s Selecting previously unselected package python3-decorator. 143s Preparing to unpack .../21-python3-decorator_5.2.1-2_all.deb ... 143s Unpacking python3-decorator (5.2.1-2) ... 143s Selecting previously unselected package python3-roman-numerals. 143s Preparing to unpack .../22-python3-roman-numerals_4.1.0-1_all.deb ... 143s Unpacking python3-roman-numerals (4.1.0-1) ... 143s Selecting previously unselected package python3-docutils. 143s Preparing to unpack .../23-python3-docutils_0.22.4+dfsg-1_all.deb ... 143s Unpacking python3-docutils (0.22.4+dfsg-1) ... 143s Selecting previously unselected package python3-dpath. 143s Preparing to unpack .../24-python3-dpath_2.2.0-2_all.deb ... 143s Unpacking python3-dpath (2.2.0-2) ... 143s Selecting previously unselected package python3-fastjsonschema. 143s Preparing to unpack .../25-python3-fastjsonschema_2.21.1-1_all.deb ... 143s Unpacking python3-fastjsonschema (2.21.1-1) ... 143s Selecting previously unselected package python3-smmap. 143s Preparing to unpack .../26-python3-smmap_6.0.0-1build1_all.deb ... 143s Unpacking python3-smmap (6.0.0-1build1) ... 143s Selecting previously unselected package python3-gitdb. 143s Preparing to unpack .../27-python3-gitdb_4.0.12-1_all.deb ... 143s Unpacking python3-gitdb (4.0.12-1) ... 143s Selecting previously unselected package python3-git. 143s Preparing to unpack .../28-python3-git_3.1.46-1_all.deb ... 143s Unpacking python3-git (3.1.46-1) ... 143s Selecting previously unselected package python3-humanfriendly. 143s Preparing to unpack .../29-python3-humanfriendly_10.0-6build1_all.deb ... 143s Unpacking python3-humanfriendly (10.0-6build1) ... 143s Selecting previously unselected package python3-platformdirs. 143s Preparing to unpack .../30-python3-platformdirs_4.5.1-1_all.deb ... 143s Unpacking python3-platformdirs (4.5.1-1) ... 143s Selecting previously unselected package python3-traitlets. 143s Preparing to unpack .../31-python3-traitlets_5.14.3+really5.14.3-2_all.deb ... 143s Unpacking python3-traitlets (5.14.3+really5.14.3-2) ... 143s Selecting previously unselected package python3-jupyter-core. 143s Preparing to unpack .../32-python3-jupyter-core_5.9.1-1_all.deb ... 143s Unpacking python3-jupyter-core (5.9.1-1) ... 143s Selecting previously unselected package python3-nbformat. 143s Preparing to unpack .../33-python3-nbformat_5.10.4-1_all.deb ... 143s Unpacking python3-nbformat (5.10.4-1) ... 143s Selecting previously unselected package python3-plac. 143s Preparing to unpack .../34-python3-plac_1.4.3-2_all.deb ... 143s Unpacking python3-plac (1.4.3-2) ... 143s Selecting previously unselected package python3-psutil. 143s Preparing to unpack .../35-python3-psutil_7.1.0-1ubuntu1_ppc64el.deb ... 143s Unpacking python3-psutil (7.1.0-1ubuntu1) ... 144s Selecting previously unselected package coinor-cbc. 144s Preparing to unpack .../36-coinor-cbc_2.10.12+ds-1build1_ppc64el.deb ... 144s Unpacking coinor-cbc (2.10.12+ds-1build1) ... 144s Selecting previously unselected package python3-pulp. 144s Preparing to unpack .../37-python3-pulp_2.7.0+dfsg-4_all.deb ... 144s Unpacking python3-pulp (2.7.0+dfsg-4) ... 144s Selecting previously unselected package python3-retry. 144s Preparing to unpack .../38-python3-retry_0.9.2-5_all.deb ... 144s Unpacking python3-retry (0.9.2-5) ... 144s Selecting previously unselected package python3-wrapt. 144s Preparing to unpack .../39-python3-wrapt_1.17.3-3_ppc64el.deb ... 144s Unpacking python3-wrapt (1.17.3-3) ... 144s Selecting previously unselected package python3-smart-open. 144s Preparing to unpack .../40-python3-smart-open_7.5.0-1_all.deb ... 144s Unpacking python3-smart-open (7.5.0-1) ... 144s Selecting previously unselected package python3-stopit. 144s Preparing to unpack .../41-python3-stopit_1.1.2-3_all.deb ... 144s Unpacking python3-stopit (1.1.2-3) ... 144s Selecting previously unselected package python3-tabulate. 144s Preparing to unpack .../42-python3-tabulate_0.9.0-1build1_all.deb ... 144s Unpacking python3-tabulate (0.9.0-1build1) ... 144s Selecting previously unselected package python3-throttler. 144s Preparing to unpack .../43-python3-throttler_1.2.2-4ubuntu1_all.deb ... 144s Unpacking python3-throttler (1.2.2-4ubuntu1) ... 144s Selecting previously unselected package python3-toposort. 144s Preparing to unpack .../44-python3-toposort_1.10-2_all.deb ... 144s Unpacking python3-toposort (1.10-2) ... 144s Selecting previously unselected package python3-yte. 144s Preparing to unpack .../45-python3-yte_1.5.4-1_all.deb ... 144s Unpacking python3-yte (1.5.4-1) ... 144s Selecting previously unselected package snakemake. 144s Preparing to unpack .../46-snakemake_7.32.4-8.1_all.deb ... 144s Unpacking snakemake (7.32.4-8.1) ... 144s Setting up python3-toposort (1.10-2) ... 144s Setting up python3-configargparse (1.7-2) ... 144s Setting up libdatrie1:ppc64el (0.2.14-1) ... 144s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 144s Setting up python3-tabulate (0.9.0-1build1) ... 144s Setting up python3-plac (1.4.3-2) ... 144s Setting up python3-platformdirs (4.5.1-1) ... 144s Setting up python3-psutil (7.1.0-1ubuntu1) ... 145s Setting up liberror-perl (0.17030-1) ... 145s Setting up python3-decorator (5.2.1-2) ... 145s Setting up libblas3:ppc64el (3.12.1-7ubuntu1) ... 145s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 145s Setting up python3-humanfriendly (10.0-6build1) ... 145s /usr/lib/python3/dist-packages/humanfriendly/testing.py:546: SyntaxWarning: 'return' in a 'finally' block 145s return super(MockedProgram, self).__exit__(*args, **kw) 145s Setting up python3-dpath (2.2.0-2) ... 145s Setting up python3-connection-pool (0.0.3-2build1) ... 145s Setting up python3-wrapt (1.17.3-3) ... 145s Setting up python3-throttler (1.2.2-4ubuntu1) ... 145s Setting up python3-retry (0.9.2-5) ... 145s Setting up libgfortran5:ppc64el (15.2.0-12ubuntu1) ... 145s Setting up python3-fastjsonschema (2.21.1-1) ... 146s Setting up python3-stopit (1.1.2-3) ... 146s Setting up python3-traitlets (5.14.3+really5.14.3-2) ... 146s Setting up python3-roman-numerals (4.1.0-1) ... 146s Setting up git-man (1:2.51.0-1ubuntu1) ... 146s Setting up sgml-base (1.31+nmu1) ... 146s Setting up python3-datrie (0.8.3-2) ... 146s Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 146s Setting up python3-smmap (6.0.0-1build1) ... 146s Setting up python3-jupyter-core (5.9.1-1) ... 146s Setting up libjs-bootstrap (3.4.1+dfsg-6) ... 146s Setting up liblapack3:ppc64el (3.12.1-7ubuntu1) ... 146s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 146s Setting up python3-smart-open (7.5.0-1) ... 146s Setting up python3-nbformat (5.10.4-1) ... 147s Setting up python3-gitdb (4.0.12-1) ... 147s Setting up python3-yte (1.5.4-1) ... 147s Setting up coinor-libcoinutils3v5:ppc64el (2.11.12+ds-1) ... 147s Setting up git (1:2.51.0-1ubuntu1) ... 147s Setting up coinor-libosi1v5:ppc64el (0.108.11+ds-1) ... 147s Setting up xml-core (0.19build1) ... 147s Setting up coinor-libclp1:ppc64el (1.17.10+ds-1build1) ... 147s Setting up python3-git (3.1.46-1) ... 147s Setting up coinor-libcgl1:ppc64el (0.60.9+ds-1build1) ... 147s Setting up coinor-libcbc3.1:ppc64el (2.10.12+ds-1build1) ... 147s Setting up coinor-cbc (2.10.12+ds-1build1) ... 147s Setting up python3-pulp (2.7.0+dfsg-4) ... 147s /usr/lib/python3/dist-packages/pulp/apis/xpress_api.py:325: SyntaxWarning: "\ " is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\ "? A raw string is also an option. 147s otherwise be interpreted by the Tcl shell: \ $ " [ 147s Processing triggers for libc-bin (2.42-2ubuntu4) ... 147s Processing triggers for man-db (2.13.1-1) ... 149s Processing triggers for sgml-base (1.31+nmu1) ... 149s Setting up docutils-common (0.22.4+dfsg-1) ... 149s Processing triggers for sgml-base (1.31+nmu1) ... 149s Setting up python3-docutils (0.22.4+dfsg-1) ... 150s Setting up snakemake (7.32.4-8.1) ... 151s autopkgtest [20:03:18]: test command1: cp tests/test_bash/Snakefile $AUTOPKGTEST_TMP && cd $AUTOPKGTEST_TMP && snakemake --cores 1 && grep -e bash test.out 151s autopkgtest [20:03:18]: test command1: [----------------------- 152s Building DAG of jobs... 152s Using shell: /usr/bin/bash 152s Provided cores: 1 (use --cores to define parallelism) 152s Rules claiming more threads will be scaled down. 152s Job stats: 152s job count 152s ----- ------- 152s a 1 152s total 1 152s 152s Select jobs to execute... 152s 152s [Fri Jan 23 20:03:18 2026] 152s rule a: 152s output: test.out 152s jobid: 0 152s reason: Missing output files: test.out 152s resources: tmpdir=/tmp 152s 152s [Fri Jan 23 20:03:18 2026] 152s Finished job 0. 152s 1 of 1 steps (100%) done 152s Complete log: .snakemake/log/2026-01-23T200317.811525.snakemake.log 152s bash 153s autopkgtest [20:03:20]: test command1: -----------------------] 153s command1 PASS 153s autopkgtest [20:03:20]: test command1: - - - - - - - - - - results - - - - - - - - - - 154s autopkgtest [20:03:20]: test run-unit-test: preparing testbed 154s Reading package lists... 154s Building dependency tree... 154s Reading state information... 154s Solving dependencies... 154s The following NEW packages will be installed: 154s environment-modules fontconfig fontconfig-config fonts-dejavu-core 154s fonts-dejavu-mono glpk-utils graphviz libamd3 libaom3 libcairo2 libcdt6 154s libcgraph8 libcolamd3 libde265-0 libdeflate0 libfontconfig1 libgd3 libglpk40 154s libgomp1 libgraphite2-3 libgvc7 libgvplugin-gd8 libgvplugin-pango8 libgvpr2 154s libharfbuzz0b libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libice6 154s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblerc4 libltdl7 154s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 154s libpaper2 libpathplan4 libpixman-1-0 libsharpyuv0 libsm6 154s libsuitesparseconfig7 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 154s libwebp7 libxcb-render0 libxcb-shm0 libxdot4 libxft2 libxpm4 libxrender1 154s libxss1 libxt6t64 python3-ftputil python3-iniconfig python3-numpy 154s python3-numpy-dev python3-pandas python3-pandas-lib python3-pluggy 154s python3-pytest python3-pytest-mock python3-pytz python3-requests-mock 154s r-base-core stress tcl8.6 unzip x11-common xdg-utils zip 154s 0 upgraded, 77 newly installed, 0 to remove and 0 not upgraded. 154s Need to get 60.8 MB of archives. 154s After this operation, 215 MB of additional disk space will be used. 154s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy-dev ppc64el 1:2.3.5+ds-3 [153 kB] 154s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy ppc64el 1:2.3.5+ds-3 [5722 kB] 155s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtcl8.6 ppc64el 8.6.17+dfsg-1 [1239 kB] 155s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el tcl8.6 ppc64el 8.6.17+dfsg-1 [14.8 kB] 155s Get:5 http://ftpmaster.internal/ubuntu resolute/universe ppc64el environment-modules ppc64el 5.6.1-1 [366 kB] 155s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-dejavu-mono all 2.37-8build1 [502 kB] 155s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-dejavu-core all 2.37-8build1 [834 kB] 155s Get:8 http://ftpmaster.internal/ubuntu resolute/main ppc64el fontconfig-config ppc64el 2.15.0-2.4ubuntu1 [38.2 kB] 155s Get:9 http://ftpmaster.internal/ubuntu resolute/main ppc64el libfontconfig1 ppc64el 2.15.0-2.4ubuntu1 [190 kB] 155s Get:10 http://ftpmaster.internal/ubuntu resolute/main ppc64el fontconfig ppc64el 2.15.0-2.4ubuntu1 [192 kB] 155s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libgomp1 ppc64el 15.2.0-12ubuntu1 [169 kB] 155s Get:12 http://ftpmaster.internal/ubuntu resolute/main ppc64el libsuitesparseconfig7 ppc64el 1:7.12.1+dfsg-1 [22.1 kB] 155s Get:13 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libamd3 ppc64el 1:7.12.1+dfsg-1 [44.6 kB] 155s Get:14 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcolamd3 ppc64el 1:7.12.1+dfsg-1 [31.0 kB] 155s Get:15 http://ftpmaster.internal/ubuntu resolute/main ppc64el libltdl7 ppc64el 2.5.4-9 [51.5 kB] 155s Get:16 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libglpk40 ppc64el 5.0-2 [488 kB] 155s Get:17 http://ftpmaster.internal/ubuntu resolute/universe ppc64el glpk-utils ppc64el 5.0-2 [227 kB] 155s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el libcdt6 ppc64el 14.1.1-2ubuntu3 [24.3 kB] 155s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el libcgraph8 ppc64el 14.1.1-2ubuntu3 [66.6 kB] 155s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el libpathplan4 ppc64el 14.1.1-2ubuntu3 [32.4 kB] 155s Get:21 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el libxdot4 ppc64el 14.1.1-2ubuntu3 [31.4 kB] 155s Get:22 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el libgvc7 ppc64el 14.1.1-2ubuntu3 [486 kB] 155s Get:23 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el libgvpr2 ppc64el 14.1.1-2ubuntu3 [148 kB] 155s Get:24 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpixman-1-0 ppc64el 0.46.4-1 [347 kB] 155s Get:25 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-render0 ppc64el 1.17.0-2build1 [17.2 kB] 155s Get:26 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-shm0 ppc64el 1.17.0-2build1 [6078 B] 155s Get:27 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxrender1 ppc64el 1:0.9.12-1 [23.0 kB] 155s Get:28 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcairo2 ppc64el 1.18.4-3 [759 kB] 155s Get:29 http://ftpmaster.internal/ubuntu resolute/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1build1 [24.7 kB] 155s Get:30 http://ftpmaster.internal/ubuntu resolute/main ppc64el libaom3 ppc64el 3.13.1-2 [2908 kB] 155s Get:31 http://ftpmaster.internal/ubuntu resolute/main ppc64el libheif-plugin-aomdec ppc64el 1.21.2-1 [14.4 kB] 155s Get:32 http://ftpmaster.internal/ubuntu resolute/main ppc64el libde265-0 ppc64el 1.0.16-1build1 [300 kB] 155s Get:33 http://ftpmaster.internal/ubuntu resolute/main ppc64el libheif-plugin-libde265 ppc64el 1.21.2-1 [10.2 kB] 155s Get:34 http://ftpmaster.internal/ubuntu resolute/main ppc64el libheif1 ppc64el 1.21.2-1 [657 kB] 155s Get:35 http://ftpmaster.internal/ubuntu resolute/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 155s Get:36 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-4ubuntu2 [215 kB] 155s Get:37 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 155s Get:38 http://ftpmaster.internal/ubuntu resolute/main ppc64el libdeflate0 ppc64el 1.23-2 [63.3 kB] 155s Get:39 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu3 [37.1 kB] 155s Get:40 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu2 [315 kB] 155s Get:41 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebp7 ppc64el 1.5.0-0.1build1 [330 kB] 155s Get:42 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtiff6 ppc64el 4.7.0-3ubuntu3 [307 kB] 155s Get:43 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxpm4 ppc64el 1:3.5.17-1build3 [50.5 kB] 155s Get:44 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgd3 ppc64el 2.3.3-13ubuntu1 [165 kB] 155s Get:45 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el libgvplugin-gd8 ppc64el 14.1.1-2ubuntu3 [31.3 kB] 155s Get:46 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgraphite2-3 ppc64el 1.3.14-11ubuntu1 [85.3 kB] 155s Get:47 http://ftpmaster.internal/ubuntu resolute/main ppc64el libharfbuzz0b ppc64el 12.3.0-4 [674 kB] 155s Get:48 http://ftpmaster.internal/ubuntu resolute/main ppc64el libthai-data all 0.1.30-1 [155 kB] 155s Get:49 http://ftpmaster.internal/ubuntu resolute/main ppc64el libthai0 ppc64el 0.1.30-1 [22.5 kB] 155s Get:50 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpango-1.0-0 ppc64el 1.56.4-1 [282 kB] 155s Get:51 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpangoft2-1.0-0 ppc64el 1.56.4-1 [61.1 kB] 155s Get:52 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpangocairo-1.0-0 ppc64el 1.56.4-1 [30.9 kB] 155s Get:53 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el libgvplugin-pango8 ppc64el 14.1.1-2ubuntu3 [29.7 kB] 155s Get:54 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el graphviz ppc64el 14.1.1-2ubuntu3 [58.5 kB] 155s Get:55 http://ftpmaster.internal/ubuntu resolute/main ppc64el x11-common all 1:7.7+24ubuntu1 [22.4 kB] 155s Get:56 http://ftpmaster.internal/ubuntu resolute/main ppc64el libice6 ppc64el 2:1.1.1-1build1 [51.9 kB] 155s Get:57 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpaper2 ppc64el 2.2.5-0.3build1 [18.1 kB] 155s Get:58 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpaper-utils ppc64el 2.2.5-0.3build1 [15.7 kB] 155s Get:59 http://ftpmaster.internal/ubuntu resolute/main ppc64el libsm6 ppc64el 2:1.2.6-1 [18.6 kB] 155s Get:60 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxft2 ppc64el 2.3.6-1build2 [61.6 kB] 155s Get:61 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxss1 ppc64el 1:1.2.3-1build4 [7470 B] 155s Get:62 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtk8.6 ppc64el 8.6.17-1 [968 kB] 155s Get:63 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxt6t64 ppc64el 1:1.2.1-1.3 [203 kB] 155s Get:64 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-ftputil all 5.1.0-1build1 [41.3 kB] 155s Get:65 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-iniconfig all 2.1.0-2 [6962 B] 155s Get:66 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pytz all 2025.2-5 [32.4 kB] 155s Get:67 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pandas-lib ppc64el 2.3.3+dfsg-3 [7213 kB] 156s Get:68 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pandas all 2.3.3+dfsg-3 [2948 kB] 156s Get:69 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pluggy all 1.6.0-2 [21.1 kB] 156s Get:70 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pytest all 9.0.2-2 [277 kB] 156s Get:71 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pytest-mock all 3.15.1-1 [11.9 kB] 156s Get:72 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-requests-mock all 1.12.1-4 [17.9 kB] 156s Get:73 http://ftpmaster.internal/ubuntu resolute/main ppc64el zip ppc64el 3.0-15ubuntu2 [198 kB] 156s Get:74 http://ftpmaster.internal/ubuntu resolute/main ppc64el unzip ppc64el 6.0-29ubuntu1 [200 kB] 156s Get:75 http://ftpmaster.internal/ubuntu resolute/main ppc64el xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 156s Get:76 http://ftpmaster.internal/ubuntu resolute/universe ppc64el r-base-core ppc64el 4.5.2-1ubuntu2 [29.3 MB] 156s Get:77 http://ftpmaster.internal/ubuntu resolute/universe ppc64el stress ppc64el 1.0.7-2 [17.9 kB] 157s Preconfiguring packages ... 157s Fetched 60.8 MB in 2s (26.7 MB/s) 157s Selecting previously unselected package python3-numpy-dev:ppc64el. 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124133 files and directories currently installed.) 157s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.5+ds-3_ppc64el.deb ... 157s Unpacking python3-numpy-dev:ppc64el (1:2.3.5+ds-3) ... 157s Selecting previously unselected package python3-numpy. 157s Preparing to unpack .../01-python3-numpy_1%3a2.3.5+ds-3_ppc64el.deb ... 157s Unpacking python3-numpy (1:2.3.5+ds-3) ... 157s Selecting previously unselected package libtcl8.6:ppc64el. 157s Preparing to unpack .../02-libtcl8.6_8.6.17+dfsg-1_ppc64el.deb ... 157s Unpacking libtcl8.6:ppc64el (8.6.17+dfsg-1) ... 157s Selecting previously unselected package tcl8.6. 157s Preparing to unpack .../03-tcl8.6_8.6.17+dfsg-1_ppc64el.deb ... 157s Unpacking tcl8.6 (8.6.17+dfsg-1) ... 157s Selecting previously unselected package environment-modules. 157s Preparing to unpack .../04-environment-modules_5.6.1-1_ppc64el.deb ... 157s Unpacking environment-modules (5.6.1-1) ... 157s Selecting previously unselected package fonts-dejavu-mono. 157s Preparing to unpack .../05-fonts-dejavu-mono_2.37-8build1_all.deb ... 157s Unpacking fonts-dejavu-mono (2.37-8build1) ... 157s Selecting previously unselected package fonts-dejavu-core. 157s Preparing to unpack .../06-fonts-dejavu-core_2.37-8build1_all.deb ... 157s Unpacking fonts-dejavu-core (2.37-8build1) ... 157s Selecting previously unselected package fontconfig-config. 157s Preparing to unpack .../07-fontconfig-config_2.15.0-2.4ubuntu1_ppc64el.deb ... 157s Unpacking fontconfig-config (2.15.0-2.4ubuntu1) ... 157s Selecting previously unselected package libfontconfig1:ppc64el. 157s Preparing to unpack .../08-libfontconfig1_2.15.0-2.4ubuntu1_ppc64el.deb ... 157s Unpacking libfontconfig1:ppc64el (2.15.0-2.4ubuntu1) ... 157s Selecting previously unselected package fontconfig. 157s Preparing to unpack .../09-fontconfig_2.15.0-2.4ubuntu1_ppc64el.deb ... 157s Unpacking fontconfig (2.15.0-2.4ubuntu1) ... 157s Selecting previously unselected package libgomp1:ppc64el. 157s Preparing to unpack .../10-libgomp1_15.2.0-12ubuntu1_ppc64el.deb ... 157s Unpacking libgomp1:ppc64el (15.2.0-12ubuntu1) ... 157s Selecting previously unselected package libsuitesparseconfig7:ppc64el. 157s Preparing to unpack .../11-libsuitesparseconfig7_1%3a7.12.1+dfsg-1_ppc64el.deb ... 157s Unpacking libsuitesparseconfig7:ppc64el (1:7.12.1+dfsg-1) ... 157s Selecting previously unselected package libamd3:ppc64el. 157s Preparing to unpack .../12-libamd3_1%3a7.12.1+dfsg-1_ppc64el.deb ... 157s Unpacking libamd3:ppc64el (1:7.12.1+dfsg-1) ... 157s Selecting previously unselected package libcolamd3:ppc64el. 157s Preparing to unpack .../13-libcolamd3_1%3a7.12.1+dfsg-1_ppc64el.deb ... 157s Unpacking libcolamd3:ppc64el (1:7.12.1+dfsg-1) ... 157s Selecting previously unselected package libltdl7:ppc64el. 157s Preparing to unpack .../14-libltdl7_2.5.4-9_ppc64el.deb ... 157s Unpacking libltdl7:ppc64el (2.5.4-9) ... 157s Selecting previously unselected package libglpk40:ppc64el. 157s Preparing to unpack .../15-libglpk40_5.0-2_ppc64el.deb ... 157s Unpacking libglpk40:ppc64el (5.0-2) ... 157s Selecting previously unselected package glpk-utils. 157s Preparing to unpack .../16-glpk-utils_5.0-2_ppc64el.deb ... 157s Unpacking glpk-utils (5.0-2) ... 157s Selecting previously unselected package libcdt6:ppc64el. 157s Preparing to unpack .../17-libcdt6_14.1.1-2ubuntu3_ppc64el.deb ... 157s Unpacking libcdt6:ppc64el (14.1.1-2ubuntu3) ... 157s Selecting previously unselected package libcgraph8:ppc64el. 157s Preparing to unpack .../18-libcgraph8_14.1.1-2ubuntu3_ppc64el.deb ... 157s Unpacking libcgraph8:ppc64el (14.1.1-2ubuntu3) ... 157s Selecting previously unselected package libpathplan4:ppc64el. 157s Preparing to unpack .../19-libpathplan4_14.1.1-2ubuntu3_ppc64el.deb ... 157s Unpacking libpathplan4:ppc64el (14.1.1-2ubuntu3) ... 157s Selecting previously unselected package libxdot4:ppc64el. 157s Preparing to unpack .../20-libxdot4_14.1.1-2ubuntu3_ppc64el.deb ... 157s Unpacking libxdot4:ppc64el (14.1.1-2ubuntu3) ... 158s Selecting previously unselected package libgvc7:ppc64el. 158s Preparing to unpack .../21-libgvc7_14.1.1-2ubuntu3_ppc64el.deb ... 158s Unpacking libgvc7:ppc64el (14.1.1-2ubuntu3) ... 158s Selecting previously unselected package libgvpr2:ppc64el. 158s Preparing to unpack .../22-libgvpr2_14.1.1-2ubuntu3_ppc64el.deb ... 158s Unpacking libgvpr2:ppc64el (14.1.1-2ubuntu3) ... 158s Selecting previously unselected package libpixman-1-0:ppc64el. 158s Preparing to unpack .../23-libpixman-1-0_0.46.4-1_ppc64el.deb ... 158s Unpacking libpixman-1-0:ppc64el (0.46.4-1) ... 158s Selecting previously unselected package libxcb-render0:ppc64el. 158s Preparing to unpack .../24-libxcb-render0_1.17.0-2build1_ppc64el.deb ... 158s Unpacking libxcb-render0:ppc64el (1.17.0-2build1) ... 158s Selecting previously unselected package libxcb-shm0:ppc64el. 158s Preparing to unpack .../25-libxcb-shm0_1.17.0-2build1_ppc64el.deb ... 158s Unpacking libxcb-shm0:ppc64el (1.17.0-2build1) ... 158s Selecting previously unselected package libxrender1:ppc64el. 158s Preparing to unpack .../26-libxrender1_1%3a0.9.12-1_ppc64el.deb ... 158s Unpacking libxrender1:ppc64el (1:0.9.12-1) ... 158s Selecting previously unselected package libcairo2:ppc64el. 158s Preparing to unpack .../27-libcairo2_1.18.4-3_ppc64el.deb ... 158s Unpacking libcairo2:ppc64el (1.18.4-3) ... 158s Selecting previously unselected package libsharpyuv0:ppc64el. 158s Preparing to unpack .../28-libsharpyuv0_1.5.0-0.1build1_ppc64el.deb ... 158s Unpacking libsharpyuv0:ppc64el (1.5.0-0.1build1) ... 158s Selecting previously unselected package libaom3:ppc64el. 158s Preparing to unpack .../29-libaom3_3.13.1-2_ppc64el.deb ... 158s Unpacking libaom3:ppc64el (3.13.1-2) ... 158s Selecting previously unselected package libheif-plugin-aomdec:ppc64el. 158s Preparing to unpack .../30-libheif-plugin-aomdec_1.21.2-1_ppc64el.deb ... 158s Unpacking libheif-plugin-aomdec:ppc64el (1.21.2-1) ... 158s Selecting previously unselected package libde265-0:ppc64el. 158s Preparing to unpack .../31-libde265-0_1.0.16-1build1_ppc64el.deb ... 158s Unpacking libde265-0:ppc64el (1.0.16-1build1) ... 158s Selecting previously unselected package libheif-plugin-libde265:ppc64el. 158s Preparing to unpack .../32-libheif-plugin-libde265_1.21.2-1_ppc64el.deb ... 158s Unpacking libheif-plugin-libde265:ppc64el (1.21.2-1) ... 158s Selecting previously unselected package libheif1:ppc64el. 158s Preparing to unpack .../33-libheif1_1.21.2-1_ppc64el.deb ... 158s Unpacking libheif1:ppc64el (1.21.2-1) ... 158s Selecting previously unselected package libimagequant0:ppc64el. 158s Preparing to unpack .../34-libimagequant0_2.18.0-1build1_ppc64el.deb ... 158s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 158s Selecting previously unselected package libjpeg-turbo8:ppc64el. 158s Preparing to unpack .../35-libjpeg-turbo8_2.1.5-4ubuntu2_ppc64el.deb ... 158s Unpacking libjpeg-turbo8:ppc64el (2.1.5-4ubuntu2) ... 158s Selecting previously unselected package libjpeg8:ppc64el. 158s Preparing to unpack .../36-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 158s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 158s Selecting previously unselected package libdeflate0:ppc64el. 158s Preparing to unpack .../37-libdeflate0_1.23-2_ppc64el.deb ... 158s Unpacking libdeflate0:ppc64el (1.23-2) ... 158s Selecting previously unselected package libjbig0:ppc64el. 158s Preparing to unpack .../38-libjbig0_2.1-6.1ubuntu3_ppc64el.deb ... 158s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu3) ... 158s Selecting previously unselected package liblerc4:ppc64el. 158s Preparing to unpack .../39-liblerc4_4.0.0+ds-5ubuntu2_ppc64el.deb ... 158s Unpacking liblerc4:ppc64el (4.0.0+ds-5ubuntu2) ... 158s Selecting previously unselected package libwebp7:ppc64el. 158s Preparing to unpack .../40-libwebp7_1.5.0-0.1build1_ppc64el.deb ... 158s Unpacking libwebp7:ppc64el (1.5.0-0.1build1) ... 158s Selecting previously unselected package libtiff6:ppc64el. 158s Preparing to unpack .../41-libtiff6_4.7.0-3ubuntu3_ppc64el.deb ... 158s Unpacking libtiff6:ppc64el (4.7.0-3ubuntu3) ... 158s Selecting previously unselected package libxpm4:ppc64el. 158s Preparing to unpack .../42-libxpm4_1%3a3.5.17-1build3_ppc64el.deb ... 158s Unpacking libxpm4:ppc64el (1:3.5.17-1build3) ... 158s Selecting previously unselected package libgd3:ppc64el. 158s Preparing to unpack .../43-libgd3_2.3.3-13ubuntu1_ppc64el.deb ... 158s 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... 158s Selecting previously unselected package libpango-1.0-0:ppc64el. 158s Preparing to unpack .../49-libpango-1.0-0_1.56.4-1_ppc64el.deb ... 158s Unpacking libpango-1.0-0:ppc64el (1.56.4-1) ... 158s Selecting previously unselected package libpangoft2-1.0-0:ppc64el. 158s Preparing to unpack .../50-libpangoft2-1.0-0_1.56.4-1_ppc64el.deb ... 158s Unpacking libpangoft2-1.0-0:ppc64el (1.56.4-1) ... 158s Selecting previously unselected package libpangocairo-1.0-0:ppc64el. 158s Preparing to unpack .../51-libpangocairo-1.0-0_1.56.4-1_ppc64el.deb ... 158s Unpacking libpangocairo-1.0-0:ppc64el (1.56.4-1) ... 158s Selecting previously unselected package libgvplugin-pango8:ppc64el. 158s Preparing to unpack .../52-libgvplugin-pango8_14.1.1-2ubuntu3_ppc64el.deb ... 158s Unpacking libgvplugin-pango8:ppc64el (14.1.1-2ubuntu3) ... 158s Selecting previously unselected package graphviz. 158s Preparing to unpack .../53-graphviz_14.1.1-2ubuntu3_ppc64el.deb ... 158s Unpacking graphviz (14.1.1-2ubuntu3) ... 158s Selecting previously unselected package x11-common. 158s Preparing to unpack .../54-x11-common_1%3a7.7+24ubuntu1_all.deb ... 158s Unpacking x11-common (1:7.7+24ubuntu1) ... 158s Selecting previously unselected package libice6:ppc64el. 158s Preparing to unpack .../55-libice6_2%3a1.1.1-1build1_ppc64el.deb ... 158s Unpacking libice6:ppc64el (2:1.1.1-1build1) ... 158s Selecting previously unselected package libpaper2:ppc64el. 158s Preparing to unpack .../56-libpaper2_2.2.5-0.3build1_ppc64el.deb ... 158s Unpacking libpaper2:ppc64el (2.2.5-0.3build1) ... 158s Selecting previously unselected package libpaper-utils. 158s Preparing to unpack .../57-libpaper-utils_2.2.5-0.3build1_ppc64el.deb ... 158s Unpacking libpaper-utils (2.2.5-0.3build1) ... 158s Selecting previously unselected package libsm6:ppc64el. 158s Preparing to unpack .../58-libsm6_2%3a1.2.6-1_ppc64el.deb ... 158s Unpacking libsm6:ppc64el (2:1.2.6-1) ... 158s Selecting previously unselected package libxft2:ppc64el. 158s 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(14.1.1-2ubuntu3) ... 162s Setting up libsuitesparseconfig7:ppc64el (1:7.12.1+dfsg-1) ... 162s Setting up libharfbuzz0b:ppc64el (12.3.0-4) ... 162s Setting up libthai-data (0.1.30-1) ... 162s Setting up libxss1:ppc64el (1:1.2.3-1build4) ... 162s Setting up libpaper2:ppc64el (2.2.5-0.3build1) ... 162s Setting up libde265-0:ppc64el (1.0.16-1build1) ... 162s Setting up xdg-utils (1.2.1-2ubuntu2) ... 162s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 162s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 162s Setting up libice6:ppc64el (2:1.1.1-1build1) ... 162s Setting up tcl8.6 (8.6.17+dfsg-1) ... 162s Setting up libamd3:ppc64el (1:7.12.1+dfsg-1) ... 162s Setting up libcolamd3:ppc64el (1:7.12.1+dfsg-1) ... 162s Setting up fontconfig-config (2.15.0-2.4ubuntu1) ... 163s Setting up python3-pytest (9.0.2-2) ... 163s Setting up python3-pandas-lib:ppc64el (2.3.3+dfsg-3) ... 163s Setting up libpaper-utils (2.2.5-0.3build1) ... 163s Setting up libthai0:ppc64el (0.1.30-1) ... 163s Setting up python3-pandas (2.3.3+dfsg-3) ... 168s Setting up libglpk40:ppc64el (5.0-2) ... 168s Setting up glpk-utils (5.0-2) ... 168s Setting up libgvc7:ppc64el (14.1.1-2ubuntu3) ... 168s Setting up python3-pytest-mock (3.15.1-1) ... 168s Setting up libtiff6:ppc64el (4.7.0-3ubuntu3) ... 168s Setting up environment-modules (5.6.1-1) ... 168s Setting up libsm6:ppc64el (2:1.2.6-1) ... 168s Setting up libxt6t64:ppc64el (1:1.2.1-1.3) ... 168s Setting up libheif-plugin-libde265:ppc64el (1.21.2-1) ... 168s Setting up libheif1:ppc64el (1.21.2-1) ... 168s Setting up libheif-plugin-aomdec:ppc64el (1.21.2-1) ... 168s Processing triggers for libc-bin (2.42-2ubuntu4) ... 168s Processing triggers for man-db (2.13.1-1) ... 169s Processing triggers for sgml-base (1.31+nmu1) ... 169s Setting up libfontconfig1:ppc64el (2.15.0-2.4ubuntu1) ... 169s Processing triggers for install-info (7.2-5) ... 169s Setting up fontconfig (2.15.0-2.4ubuntu1) ... 171s Regenerating fonts cache... done. 171s Setting up libxft2:ppc64el (2.3.6-1build2) ... 171s Setting up libtk8.6:ppc64el (8.6.17-1) ... 171s Setting up libpango-1.0-0:ppc64el (1.56.4-1) ... 171s Setting up libcairo2:ppc64el (1.18.4-3) ... 171s Setting up libgd3:ppc64el (2.3.3-13ubuntu1) ... 171s Setting up libpangoft2-1.0-0:ppc64el (1.56.4-1) ... 171s Setting up libpangocairo-1.0-0:ppc64el (1.56.4-1) ... 171s Setting up libgvplugin-pango8:ppc64el (14.1.1-2ubuntu3) ... 171s Setting up libgvplugin-gd8:ppc64el (14.1.1-2ubuntu3) ... 171s Setting up r-base-core (4.5.2-1ubuntu2) ... 171s Creating config file /etc/R/Renviron with new version 171s Setting up graphviz (14.1.1-2ubuntu3) ... 172s Processing triggers for libc-bin (2.42-2ubuntu4) ... 172s autopkgtest [20:03:39]: test run-unit-test: [----------------------- 173s ============================= test session starts ============================== 173s platform linux -- Python 3.14.2, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3 173s cachedir: .pytest_cache 173s rootdir: /tmp/autopkgtest.qwVRTi/autopkgtest_tmp 173s plugins: requests_mock-1.12.1, typeguard-4.4.4, mock-3.15.1 177s collecting ... collected 395 items / 97 deselected / 298 selected 177s 177s tests/test_expand.py::test_simple_expand PASSED [ 0%] 177s tests/test_expand.py::test_allow_missing PASSED [ 0%] 177s tests/test_google_lifesciences.py::test_google_lifesciences SKIPPED [ 1%] 177s tests/test_google_lifesciences.py::test_touch_remote_prefix SKIPPED [ 1%] 177s tests/test_google_lifesciences.py::test_cloud_checkpoints_issue574 SKIPPED [ 1%] 177s tests/test_io.py::test_wildcard_regex PASSED [ 2%] 177s tests/test_io.py::test_expand PASSED [ 2%] 177s tests/test_kubernetes.py::test_kubernetes_plain SKIPPED (Skipping GC...) 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[ 13%] 177s tests/test_persistence.py::TestCleanupContainers::test_one_unrequired_container_gets_removed PASSED [ 13%] 177s tests/test_schema.py::test_config PASSED [ 14%] 178s tests/test_schema.py::test_config_ref FAILED [ 14%] 178s tests/test_schema.py::test_dataframe PASSED [ 14%] 178s tests/test_slurm.py::test_slurm_mpi SKIPPED (Slurm is not setup when...) [ 15%] 178s tests/test_slurm.py::test_slurm_group_job SKIPPED (Slurm is not setu...) [ 15%] 178s tests/test_slurm.py::test_slurm_group_parallel SKIPPED (Slurm is not...) [ 15%] 178s tests/test_slurm.py::test_slurm_complex SKIPPED (Slurm is not setup ...) [ 16%] 178s tests/test_slurm.py::test_slurm_extra_arguments SKIPPED (Slurm and C...) [ 16%] 178s tests/testapi.py::test_keep_logger PASSED [ 16%] 178s tests/testapi.py::test_workflow_calling SKIPPED (This test is known ...) 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tests/tests.py::test_new_resources_can_be_defined_as_local PASSED [ 55%] 828s tests/tests.py::test_resources_can_be_overwritten_as_global PASSED [ 55%] 848s tests/tests.py::test_scopes_submitted_to_cluster PASSED [ 56%] 869s tests/tests.py::test_resources_submitted_to_cluster PASSED [ 56%] 889s tests/tests.py::test_excluded_resources_not_submitted_to_cluster PASSED [ 56%] 909s tests/tests.py::test_group_job_fail PASSED [ 57%] 909s tests/tests.py::test_validate PASSED [ 57%] 909s tests/tests.py::test_validate_fail PASSED [ 57%] 909s tests/tests.py::test_issue854 PASSED [ 58%] 939s tests/tests.py::test_issue850 PASSED [ 58%] 969s tests/tests.py::test_issue860 PASSED [ 58%] 969s tests/tests.py::test_issue894 PASSED [ 59%] 969s tests/tests.py::test_issue584 PASSED [ 59%] 969s tests/tests.py::test_issue912 PASSED [ 59%] 999s tests/tests.py::test_job_properties PASSED [ 60%] 1000s tests/tests.py::test_issue916 PASSED [ 60%] 1040s tests/tests.py::test_issue930 PASSED [ 60%] 1040s tests/tests.py::test_issue1037 PASSED [ 61%] 1040s tests/tests.py::test_issue1046 PASSED [ 61%] 1040s tests/tests.py::test_checkpoints PASSED [ 61%] 1040s tests/tests.py::test_checkpoints_dir PASSED [ 62%] 1041s tests/tests.py::test_issue1092 PASSED [ 62%] 1041s tests/tests.py::test_issue958 PASSED [ 62%] 1041s tests/tests.py::test_issue471 PASSED [ 63%] 1041s tests/tests.py::test_issue1085 PASSED [ 63%] 1041s tests/tests.py::test_expand_flag PASSED [ 63%] 1041s tests/tests.py::test_tmpdir PASSED [ 64%] 1041s tests/tests.py::test_tmpdir_default PASSED [ 64%] 1042s tests/tests.py::test_issue1284 PASSED [ 64%] 1042s tests/tests.py::test_issue1281 PASSED [ 65%] 1042s tests/tests.py::test_filegraph PASSED [ 65%] 1042s tests/tests.py::test_batch PASSED [ 65%] 1043s tests/tests.py::test_batch_final PASSED [ 66%] 1043s tests/tests.py::test_batch_fail PASSED [ 66%] 1043s tests/tests.py::test_github_issue52 PASSED [ 66%] 1043s tests/tests.py::test_envvars PASSED [ 67%] 1043s tests/tests.py::test_github_issue105 PASSED [ 67%] 1043s tests/tests.py::test_github_issue413 PASSED [ 67%] 1043s tests/tests.py::test_github_issue627 PASSED [ 68%] 1045s tests/tests.py::test_github_issue727 PASSED [ 68%] 1046s tests/tests.py::test_github_issue988 PASSED [ 68%] 1046s tests/tests.py::test_output_file_cache PASSED [ 69%] 1046s tests/tests.py::test_multiext PASSED [ 69%] 1046s tests/tests.py::test_core_dependent_threads PASSED [ 69%] 1046s tests/tests.py::TestParseCoresJobs::test_no_exec[input0-output0] PASSED [ 70%] 1046s tests/tests.py::TestParseCoresJobs::test_no_exec[input1-output1] PASSED [ 70%] 1046s tests/tests.py::TestParseCoresJobs::test_no_exec[input2-output2] PASSED [ 70%] 1046s tests/tests.py::TestParseCoresJobs::test_no_exec[input3-output3] PASSED [ 71%] 1046s tests/tests.py::TestParseCoresJobs::test_non_local_job[input0-output0] PASSED [ 71%] 1046s tests/tests.py::TestParseCoresJobs::test_non_local_job[input1-output1] PASSED [ 71%] 1046s tests/tests.py::TestParseCoresJobs::test_non_local_job[input2-output2] PASSED [ 72%] 1046s tests/tests.py::TestParseCoresJobs::test_non_local_job[input3-None] PASSED [ 72%] 1046s tests/tests.py::TestParseCoresJobs::test_non_local_job[input4-None] PASSED [ 72%] 1046s tests/tests.py::TestParseCoresJobs::test_non_local_job[input5-output5] PASSED [ 73%] 1046s tests/tests.py::TestParseCoresJobs::test_local_job[input0-output0] PASSED [ 73%] 1046s tests/tests.py::TestParseCoresJobs::test_local_job[input1-output1] PASSED [ 73%] 1046s tests/tests.py::TestParseCoresJobs::test_local_job[input2-output2] PASSED [ 74%] 1046s tests/tests.py::TestParseCoresJobs::test_local_job[input3-None] PASSED [ 74%] 1046s tests/tests.py::TestParseCoresJobs::test_local_job[input4-output4] PASSED [ 74%] 1046s tests/tests.py::TestParseCoresJobs::test_local_job[input5-output5] PASSED [ 75%] 1046s tests/tests.py::TestParseCoresJobs::test_local_job[input6-None] PASSED [ 75%] 1046s tests/tests.py::TestParseCoresJobs::test_local_job[input7-output7] PASSED [ 75%] 1046s tests/tests.py::test_linting PASSED [ 76%] 1076s tests/tests.py::test_string_resources PASSED [ 76%] 1076s tests/tests.py::test_github_issue456 PASSED [ 76%] 1076s tests/tests.py::test_scatter_gather PASSED [ 77%] 1076s tests/tests.py::test_parsing_terminal_comment_following_statement PASSED [ 77%] 1076s tests/tests.py::test_github_issue640 PASSED [ 77%] 1079s tests/tests.py::test_generate_unit_tests PASSED [ 78%] 1079s tests/tests.py::test_metadata_migration PASSED [ 78%] 1081s tests/tests.py::test_paramspace PASSED [ 78%] 1084s tests/tests.py::test_paramspace_single_wildcard PASSED [ 79%] 1103s tests/tests.py::test_github_issue806 PASSED [ 79%] 1103s tests/tests.py::test_long_shell PASSED [ 79%] 1103s tests/tests.py::test_modules_all PASSED [ 80%] 1103s tests/tests.py::test_module_nested PASSED [ 80%] 1103s tests/tests.py::test_modules_all_exclude_1 PASSED [ 80%] 1103s tests/tests.py::test_modules_all_exclude_2 PASSED [ 81%] 1103s tests/tests.py::test_modules_specific PASSED [ 81%] 1104s tests/tests.py::test_use_rule_same_module PASSED [ 81%] 1104s tests/tests.py::test_module_no_prefixing_modified_paths PASSED [ 82%] 1104s tests/tests.py::test_module_worfklow_namespacing PASSED [ 82%] 1104s tests/tests.py::test_handover PASSED [ 82%] 1104s tests/tests.py::test_source_path PASSED [ 83%] 1104s tests/tests.py::test_filesep_windows_targets SKIPPED (Windows stuff) [ 83%] 1104s tests/tests.py::test_filesep_on_windows SKIPPED (Windows stuff) [ 83%] 1104s tests/tests.py::test_set_resources PASSED [ 84%] 1105s tests/tests.py::test_github_issue1069 PASSED [ 84%] 1105s tests/tests.py::test_touch_pipeline_with_temp_dir PASSED [ 84%] 1106s tests/tests.py::test_all_temp PASSED [ 85%] 1106s tests/tests.py::test_strict_mode PASSED [ 85%] 1126s tests/tests.py::test_github_issue1158 PASSED [ 85%] 1126s tests/tests.py::test_converting_path_for_r_script PASSED [ 86%] 1146s tests/tests.py::test_checkpoint_allowed_rules PASSED [ 86%] 1147s tests/tests.py::test_modules_ruledeps_inheritance PASSED [ 86%] 1230s tests/tests.py::test_issue1331 PASSED [ 87%] 1230s tests/tests.py::test_default_target PASSED [ 87%] 1230s tests/tests.py::test_cache_multioutput PASSED [ 87%] 1232s tests/tests.py::test_github_issue1384 PASSED [ 88%] 1233s tests/tests.py::test_template_engine PASSED [ 88%] 1233s tests/tests.py::test_groupid_expand_local PASSED [ 88%] 1253s tests/tests.py::test_groupid_expand_cluster PASSED [ 89%] 1255s tests/tests.py::test_service_jobs PASSED [ 89%] 1255s tests/tests.py::test_incomplete_params PASSED [ 89%] 1256s tests/tests.py::test_github_issue261 PASSED [ 90%] 1256s tests/tests.py::test_pipe_depend PASSED [ 90%] 1256s tests/tests.py::test_pipe_depend_target_file PASSED [ 90%] 1256s tests/tests.py::test_github_issue1500 PASSED [ 91%] 1256s tests/tests.py::test_github_issue1542 PASSED [ 91%] 1256s tests/tests.py::test_github_issue1550 PASSED [ 91%] 1256s tests/tests.py::test_github_issue1498 PASSED [ 92%] 1256s tests/tests.py::test_lazy_resources PASSED [ 92%] 1256s tests/tests.py::test_cleanup_metadata_fail PASSED [ 92%] 1256s tests/tests.py::test_github_issue1389 PASSED [ 93%] 1256s tests/tests.py::test_github_issue2142 PASSED [ 93%] 1256s tests/tests.py::test_ensure_nonempty_fail PASSED [ 93%] 1257s tests/tests.py::test_ensure_success PASSED [ 94%] 1257s tests/tests.py::test_ensure_checksum_fail PASSED [ 94%] 1258s tests/tests.py::test_fstring PASSED [ 94%] 1269s tests/tests.py::test_github_issue1261 PASSED [ 95%] 1269s tests/tests.py::test_retries PASSED [ 95%] 1270s tests/tests.py::test_retries_not_overriden PASSED [ 95%] 1270s tests/tests.py::test_module_input_func PASSED [ 96%] 1270s tests/tests.py::test_github_issue1618 PASSED [ 96%] 1270s tests/tests.py::test_github_issue1818 PASSED [ 96%] 1271s tests/tests.py::test_match_by_wildcard_names PASSED [ 97%] 1271s tests/tests.py::test_github_issue929 PASSED [ 97%] 1273s tests/tests.py::test_github_issue1882 PASSED [ 97%] 1273s tests/tests.py::test_inferred_resources PASSED [ 98%] 1274s tests/tests.py::test_workflow_profile PASSED [ 98%] 1275s tests/tests.py::test_no_workflow_profile PASSED [ 98%] 1275s tests/tests.py::test_localrule PASSED [ 99%] 1275s tests/tests.py::test_module_wildcard_constraints PASSED [ 99%] 1275s tests/tests.py::test_config_yte PASSED [100%] 1275s 1275s =================================== FAILURES =================================== 1275s _______________________________ test_config_ref ________________________________ 1275s 1275s self = 1275s url = 'file:/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1275s 1275s def resolve_from_url(self, url): 1275s """ 1275s Resolve the given URL. 1275s """ 1275s url, fragment = urldefrag(url) 1275s if not url: 1275s url = self.base_uri 1275s 1275s try: 1275s > document = self.store[url] 1275s ^^^^^^^^^^^^^^^ 1275s 1275s /usr/lib/python3/dist-packages/jsonschema/validators.py:1096: 1275s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1275s 1275s self = {'https://json-schema.org/draft/2020-12/meta/validation': {'$schema': 'https://json-schema.org/draft/2020-12/schema', ...t': 'json', '$ref': '/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.json#/definitions/jsonbar'}}}}}} 1275s uri = 'file:/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1275s 1275s def __getitem__(self, uri): 1275s > return self.store[self.normalize(uri)] 1275s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1275s E KeyError: 'file:///tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1275s 1275s /usr/lib/python3/dist-packages/jsonschema/_utils.py:20: KeyError 1275s 1275s During handling of the above exception, another exception occurred: 1275s 1275s self = 1275s url = 'file:/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1275s 1275s def resolve_from_url(self, url): 1275s """ 1275s Resolve the given URL. 1275s """ 1275s url, fragment = urldefrag(url) 1275s if not url: 1275s url = self.base_uri 1275s 1275s try: 1275s document = self.store[url] 1275s except KeyError: 1275s try: 1275s > document = self.resolve_remote(url) 1275s ^^^^^^^^^^^^^^^^^^^^^^^^ 1275s 1275s /usr/lib/python3/dist-packages/jsonschema/validators.py:1099: 1275s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1275s /usr/lib/python3/dist-packages/jsonschema/validators.py:1196: in resolve_remote 1275s result = self.handlers[scheme](uri) 1275s ^^^^^^^^^^^^^^^^^^^^^^^^^^ 1275s /usr/lib/python3/dist-packages/snakemake/utils.py:74: in 1275s "file": lambda uri: _load_configfile(re.sub("^file://", "", uri)) 1275s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1275s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1275s 1275s configpath_or_obj = 'file:/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1275s filetype = 'Config' 1275s 1275s def _load_configfile(configpath_or_obj, filetype="Config"): 1275s "Tries to load a configfile first as JSON, then as YAML, into a dict." 1275s import yaml 1275s 1275s if isinstance(configpath_or_obj, str) or isinstance(configpath_or_obj, Path): 1275s > obj = open(configpath_or_obj, encoding="utf-8") 1275s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1275s E FileNotFoundError: [Errno 2] No such file or directory: 'file:/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1275s 1275s /usr/lib/python3/dist-packages/snakemake/io.py:1694: FileNotFoundError 1275s 1275s During handling of the above exception, another exception occurred: 1275s 1275s config_schema_ref = local('/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/config.ref.schema.yaml') 1275s 1275s def test_config_ref(config_schema_ref): 1275s config = {} 1275s > validate(config, str(config_schema_ref)) 1275s 1275s tests/test_schema.py:127: 1275s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1275s /usr/lib/python3/dist-packages/snakemake/utils.py:141: in validate 1275s DefaultValidator(schema, resolver=resolver).validate(data) 1275s /usr/lib/python3/dist-packages/jsonschema/validators.py:434: in validate 1275s for error in self.iter_errors(*args, **kwargs): 1275s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1275s /usr/lib/python3/dist-packages/jsonschema/validators.py:368: in iter_errors 1275s for error in errors: 1275s ^^^^^^ 1275s /usr/lib/python3/dist-packages/snakemake/utils.py:89: in set_defaults 1275s for error in validate_properties(validator, properties, instance, schema): 1275s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1275s /usr/lib/python3/dist-packages/jsonschema/_keywords.py:295: in properties 1275s yield from validator.descend( 1275s /usr/lib/python3/dist-packages/jsonschema/validators.py:416: in descend 1275s for error in errors: 1275s ^^^^^^ 1275s /usr/lib/python3/dist-packages/snakemake/utils.py:89: in set_defaults 1275s for error in validate_properties(validator, properties, instance, schema): 1275s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1275s /usr/lib/python3/dist-packages/jsonschema/_keywords.py:295: in properties 1275s yield from validator.descend( 1275s /usr/lib/python3/dist-packages/jsonschema/validators.py:416: in descend 1275s for error in errors: 1275s ^^^^^^ 1275s /usr/lib/python3/dist-packages/jsonschema/_keywords.py:274: in ref 1275s yield from validator._validate_reference(ref=ref, instance=instance) 1275s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1275s /usr/lib/python3/dist-packages/jsonschema/validators.py:461: in _validate_reference 1275s scope, resolved = resolve(ref) 1275s ^^^^^^^^^^^^ 1275s /usr/lib/python3/dist-packages/jsonschema/validators.py:1085: in resolve 1275s return url, self._remote_cache(url) 1275s ^^^^^^^^^^^^^^^^^^^^^^^ 1275s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1275s 1275s self = 1275s url = 'file:/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1275s 1275s def resolve_from_url(self, url): 1275s """ 1275s Resolve the given URL. 1275s """ 1275s url, fragment = urldefrag(url) 1275s if not url: 1275s url = self.base_uri 1275s 1275s try: 1275s document = self.store[url] 1275s except KeyError: 1275s try: 1275s document = self.resolve_remote(url) 1275s except Exception as exc: 1275s > raise exceptions._RefResolutionError(exc) 1275s E jsonschema.exceptions._RefResolutionError: [Errno 2] No such file or directory: 'file:/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1275s 1275s /usr/lib/python3/dist-packages/jsonschema/validators.py:1101: _RefResolutionError 1275s ------------------------------ Captured log call ------------------------------- 1275s CRITICAL snakemake.logging:logging.py:582 No validator found for JSON Schema version identifier 'https://json-schema.org/draft/2020-12/schema#' 1275s CRITICAL snakemake.logging:logging.py:582 Defaulting to validator for JSON Schema version 'https://json-schema.org/draft/2020-12/schema' 1275s CRITICAL snakemake.logging:logging.py:582 Note that schema file may not be validated correctly. 1275s =============================== warnings summary =============================== 1275s tests/test_schema.py: 10 warnings 1275s tests/tests.py: 6 warnings 1275s /usr/lib/python3/dist-packages/snakemake/utils.py:50: DeprecationWarning: jsonschema.RefResolver is deprecated as of v4.18.0, in favor of the https://github.com/python-jsonschema/referencing library, which provides more compliant referencing behavior as well as more flexible APIs for customization. A future release will remove RefResolver. Please file a feature request (on referencing) if you are missing an API for the kind of customization you need. 1275s from jsonschema import validators, RefResolver 1275s 1275s tests/testapi.py::test_keep_logger 1275s /usr/lib/python3/dist-packages/stopit/__init__.py:10: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 1275s import pkg_resources 1275s 1275s tests/testapi.py::test_lockexception 1275s /usr/lib/python3/dist-packages/_pytest/python.py:170: PytestReturnNotNoneWarning: Test functions should return None, but tests/testapi.py::test_lockexception returned . 1275s Did you mean to use `assert` instead of `return`? 1275s See https://docs.pytest.org/en/stable/how-to/assert.html#return-not-none for more information. 1275s warnings.warn( 1275s 1275s tests/tests.py::test_glpk_solver 1275s :898: DeprecationWarning: This process (pid=3878) is multi-threaded, use of fork() may lead to deadlocks in the child. 1275s 1275s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 1275s =========================== short test summary info ============================ 1275s FAILED tests/test_schema.py::test_config_ref - jsonschema.exceptions._RefReso... 1275s = 1 failed, 251 passed, 46 skipped, 97 deselected, 19 warnings in 1101.91s (0:18:21) = 1276s autopkgtest [20:22:03]: test run-unit-test: -----------------------] 1277s autopkgtest [20:22:04]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 1277s run-unit-test FAIL non-zero exit status 1 1277s autopkgtest [20:22:04]: @@@@@@@@@@@@@@@@@@@@ summary 1277s command1 PASS 1277s run-unit-test FAIL non-zero exit status 1