0s autopkgtest [14:23:06]: starting date and time: 2025-12-02 14:23:06+0000 0s autopkgtest [14:23:06]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [14:23:06]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.scvakbt_/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:mathjax --apt-upgrade snakemake --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=mathjax/2.7.9+dfsg-1build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-ppc64el-6.secgroup --name adt-resolute-ppc64el-snakemake-20251202-142306-juju-7f2275-prod-proposed-migration-environment-15-1d1b8adb-64b6-4729-bbc6-ee39d6c7b2d8 --image adt/ubuntu-resolute-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-ppc64el-snakemake-20251202-142306-juju-7f2275-prod-proposed-migration-environment-15-1d1b8adb-64b6-4729-bbc6-ee39d6c7b2d8 from image adt/ubuntu-resolute-ppc64el-server-20251202.img (UUID 25f85c5d-e5ce-48b1-83d0-660d37c119e5)... 50s autopkgtest [14:23:56]: testbed dpkg architecture: ppc64el 50s autopkgtest [14:23:56]: testbed apt version: 3.1.12 51s autopkgtest [14:23:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup 51s autopkgtest [14:23:57]: testbed release detected to be: None 52s autopkgtest [14:23:58]: updating testbed package index (apt update) 53s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 53s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 53s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 53s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 53s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [844 kB] 53s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [135 kB] 54s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [20.5 kB] 54s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el Packages [127 kB] 54s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el Packages [531 kB] 54s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse ppc64el Packages [5176 B] 54s Fetched 1787 kB in 2s (894 kB/s) 55s Reading package lists... 56s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 56s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 56s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 56s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 57s Reading package lists... 57s Reading package lists... 57s Building dependency tree... 57s Reading state information... 58s Calculating upgrade... 58s The following packages will be upgraded: 58s bcache-tools servicelog 58s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 58s Need to get 54.0 kB of archives. 58s After this operation, 1024 B disk space will be freed. 58s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el servicelog ppc64el 1.1.16-1build2 [33.7 kB] 58s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el bcache-tools ppc64el 1.0.8-5build2 [20.3 kB] 59s dpkg-preconfigure: unable to re-open stdin: No such file or directory 59s Fetched 54.0 kB in 1s (98.4 kB/s) 59s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 119869 files and directories currently installed.) 59s Preparing to unpack .../servicelog_1.1.16-1build2_ppc64el.deb ... 59s Unpacking servicelog (1.1.16-1build2) over (1.1.16-1build1) ... 59s Preparing to unpack .../bcache-tools_1.0.8-5build2_ppc64el.deb ... 59s Unpacking bcache-tools (1.0.8-5build2) over (1.0.8-5build1) ... 59s Setting up bcache-tools (1.0.8-5build2) ... 59s Setting up servicelog (1.1.16-1build2) ... 59s Processing triggers for man-db (2.13.1-1) ... 60s Processing triggers for initramfs-tools (0.150ubuntu5) ... 60s update-initramfs: Generating /boot/initrd.img-6.17.0-6-generic 69s autopkgtest [14:24:15]: upgrading testbed (apt dist-upgrade and autopurge) 70s Reading package lists... 70s Building dependency tree... 70s Reading state information... 70s Calculating upgrade... 70s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 71s Reading package lists... 71s Building dependency tree... 71s Reading state information... 71s Solving dependencies... 71s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 71s autopkgtest [14:24:17]: rebooting testbed after setup commands that affected boot 99s autopkgtest [14:24:45]: testbed running kernel: Linux 6.17.0-6-generic #6-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 7 13:47:32 UTC 2025 102s autopkgtest [14:24:48]: @@@@@@@@@@@@@@@@@@@@ apt-source snakemake 108s Get:1 http://ftpmaster.internal/ubuntu resolute/universe snakemake 7.32.4-7 (dsc) [3526 B] 108s Get:2 http://ftpmaster.internal/ubuntu resolute/universe snakemake 7.32.4-7 (tar) [8886 kB] 108s Get:3 http://ftpmaster.internal/ubuntu resolute/universe snakemake 7.32.4-7 (diff) [29.8 kB] 108s gpgv: Signature made Sun Feb 9 22:32:14 2025 UTC 108s gpgv: using RSA key 67CB311005C4EDBE32175308DEE50D0D567EA266 108s gpgv: issuer "rebecca_palmer@zoho.com" 108s gpgv: Can't check signature: No public key 108s dpkg-source: warning: cannot verify inline signature for ./snakemake_7.32.4-7.dsc: no acceptable signature found 108s autopkgtest [14:24:54]: testing package snakemake version 7.32.4-7 109s autopkgtest [14:24:55]: build not needed 111s autopkgtest [14:24:57]: test command1: preparing testbed 111s Reading package lists... 112s Building dependency tree... 112s Reading state information... 112s Solving dependencies... 112s The following NEW packages will be installed: 112s coinor-cbc coinor-libcbc3.1 coinor-libcgl1 coinor-libclp1 112s coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common 112s fonts-glyphicons-halflings git git-man libblas3 libdatrie1 liberror-perl 112s libgfortran5 libjs-bootstrap libjs-jquery liblapack3 python3-configargparse 112s python3-connection-pool python3-datrie python3-decorator python3-docutils 112s python3-dpath python3-fastjsonschema python3-git python3-gitdb 112s python3-humanfriendly python3-jupyter-core python3-nbformat python3-plac 112s python3-platformdirs python3-psutil python3-pulp python3-ratelimiter 112s python3-retry python3-roman python3-smart-open python3-smmap python3-stopit 112s python3-tabulate python3-throttler python3-toposort python3-traitlets 112s python3-wrapt python3-yte sgml-base snakemake xml-core 113s 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded. 113s Need to get 18.9 MB of archives. 113s After this operation, 72.5 MB of additional disk space will be used. 113s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el libblas3 ppc64el 3.12.1-7 [291 kB] 113s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgfortran5 ppc64el 15.2.0-9ubuntu1 [620 kB] 113s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblapack3 ppc64el 3.12.1-7 [2960 kB] 114s Get:4 http://ftpmaster.internal/ubuntu resolute/universe ppc64el coinor-libcoinutils3v5 ppc64el 2.11.12+ds-1 [651 kB] 115s Get:5 http://ftpmaster.internal/ubuntu resolute/universe ppc64el coinor-libosi1v5 ppc64el 0.108.11+ds-1 [309 kB] 115s Get:6 http://ftpmaster.internal/ubuntu resolute/universe ppc64el coinor-libclp1 ppc64el 1.17.10+ds-1 [1059 kB] 115s Get:7 http://ftpmaster.internal/ubuntu resolute/universe ppc64el coinor-libcgl1 ppc64el 0.60.9+ds-1 [499 kB] 115s Get:8 http://ftpmaster.internal/ubuntu resolute/universe ppc64el coinor-libcbc3.1 ppc64el 2.10.12+ds-1 [844 kB] 115s Get:9 http://ftpmaster.internal/ubuntu resolute/main ppc64el sgml-base all 1.31+nmu1 [11.0 kB] 115s Get:10 http://ftpmaster.internal/ubuntu resolute/main ppc64el xml-core all 0.19 [20.3 kB] 115s Get:11 http://ftpmaster.internal/ubuntu resolute/main ppc64el docutils-common all 0.21.2+dfsg-2 [131 kB] 116s Get:12 http://ftpmaster.internal/ubuntu resolute/universe ppc64el fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 116s Get:13 http://ftpmaster.internal/ubuntu resolute/main ppc64el liberror-perl all 0.17030-1 [23.5 kB] 116s Get:14 http://ftpmaster.internal/ubuntu resolute/main ppc64el git-man all 1:2.51.0-1ubuntu1 [1179 kB] 116s Get:15 http://ftpmaster.internal/ubuntu resolute/main ppc64el git ppc64el 1:2.51.0-1ubuntu1 [7646 kB] 118s Get:16 http://ftpmaster.internal/ubuntu resolute/main ppc64el libdatrie1 ppc64el 0.2.14-1 [22.7 kB] 118s Get:17 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 118s Get:18 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 118s Get:19 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-configargparse all 1.7-2 [31.7 kB] 118s Get:20 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-connection-pool all 0.0.3-2build1 [5792 B] 118s Get:21 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-datrie ppc64el 0.8.3-2 [204 kB] 118s Get:22 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-decorator all 5.2.1-2 [28.1 kB] 118s Get:23 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-roman all 5.1-1 [10.6 kB] 118s Get:24 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-docutils all 0.21.2+dfsg-2 [409 kB] 118s Get:25 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-dpath all 2.2.0-1 [20.1 kB] 118s Get:26 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-fastjsonschema all 2.21.1-1 [20.4 kB] 118s Get:27 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-smmap all 6.0.0-1 [20.5 kB] 118s Get:28 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-gitdb all 4.0.12-1 [46.4 kB] 118s Get:29 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-git all 3.1.45-1 [149 kB] 118s Get:30 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-humanfriendly all 10.0-6 [70.8 kB] 118s Get:31 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-platformdirs all 4.4.0-1 [16.9 kB] 118s Get:32 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 118s Get:33 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-jupyter-core all 5.7.2-5 [28.1 kB] 118s Get:34 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-nbformat all 5.9.1-1 [41.2 kB] 118s Get:35 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-plac all 1.4.3-2 [63.2 kB] 118s Get:36 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-psutil ppc64el 7.1.0-1ubuntu1 [192 kB] 119s Get:37 http://ftpmaster.internal/ubuntu resolute/universe ppc64el coinor-cbc ppc64el 2.10.12+ds-1 [14.2 kB] 119s Get:38 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pulp all 2.7.0+dfsg-4 [71.4 kB] 119s Get:39 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-ratelimiter ppc64el 1.2.0.post0-5 [5786 B] 119s Get:40 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-retry all 0.9.2-4 [6094 B] 119s Get:41 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-wrapt ppc64el 1.17.3-2 [42.0 kB] 119s Get:42 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-smart-open all 7.1.0-1 [89.9 kB] 119s Get:43 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-stopit all 1.1.2-3 [12.8 kB] 119s Get:44 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-tabulate all 0.9.0-1 [45.3 kB] 119s Get:45 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-throttler all 1.2.2-2 [7138 B] 119s Get:46 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-toposort all 1.10-2 [6348 B] 119s Get:47 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-yte all 1.5.4-1 [12.0 kB] 119s Get:48 http://ftpmaster.internal/ubuntu resolute/universe ppc64el snakemake all 7.32.4-7 [274 kB] 119s Fetched 18.9 MB in 7s (2719 kB/s) 119s Selecting previously unselected package libblas3:ppc64el. 119s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 119869 files and directories currently installed.) 119s Preparing to unpack .../00-libblas3_3.12.1-7_ppc64el.deb ... 119s Unpacking libblas3:ppc64el (3.12.1-7) ... 119s Selecting previously unselected package libgfortran5:ppc64el. 119s Preparing to unpack .../01-libgfortran5_15.2.0-9ubuntu1_ppc64el.deb ... 119s Unpacking libgfortran5:ppc64el (15.2.0-9ubuntu1) ... 119s Selecting previously unselected package liblapack3:ppc64el. 119s Preparing to unpack .../02-liblapack3_3.12.1-7_ppc64el.deb ... 119s Unpacking liblapack3:ppc64el (3.12.1-7) ... 120s Selecting previously unselected package coinor-libcoinutils3v5:ppc64el. 120s Preparing to unpack .../03-coinor-libcoinutils3v5_2.11.12+ds-1_ppc64el.deb ... 120s Unpacking coinor-libcoinutils3v5:ppc64el (2.11.12+ds-1) ... 120s Selecting previously unselected package coinor-libosi1v5:ppc64el. 120s Preparing to unpack .../04-coinor-libosi1v5_0.108.11+ds-1_ppc64el.deb ... 120s Unpacking coinor-libosi1v5:ppc64el (0.108.11+ds-1) ... 120s Selecting previously unselected package coinor-libclp1:ppc64el. 120s Preparing to unpack .../05-coinor-libclp1_1.17.10+ds-1_ppc64el.deb ... 120s Unpacking coinor-libclp1:ppc64el (1.17.10+ds-1) ... 120s Selecting previously unselected package coinor-libcgl1:ppc64el. 120s Preparing to unpack .../06-coinor-libcgl1_0.60.9+ds-1_ppc64el.deb ... 120s Unpacking coinor-libcgl1:ppc64el (0.60.9+ds-1) ... 120s Selecting previously unselected package coinor-libcbc3.1:ppc64el. 120s Preparing to unpack .../07-coinor-libcbc3.1_2.10.12+ds-1_ppc64el.deb ... 120s Unpacking coinor-libcbc3.1:ppc64el (2.10.12+ds-1) ... 120s Selecting previously unselected package sgml-base. 120s Preparing to unpack .../08-sgml-base_1.31+nmu1_all.deb ... 120s Unpacking sgml-base (1.31+nmu1) ... 120s Selecting previously unselected package xml-core. 120s Preparing to unpack .../09-xml-core_0.19_all.deb ... 120s Unpacking xml-core (0.19) ... 120s Selecting previously unselected package docutils-common. 120s Preparing to unpack .../10-docutils-common_0.21.2+dfsg-2_all.deb ... 120s Unpacking docutils-common (0.21.2+dfsg-2) ... 120s Selecting previously unselected package fonts-glyphicons-halflings. 120s Preparing to unpack .../11-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 120s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 120s Selecting previously unselected package liberror-perl. 120s Preparing to unpack .../12-liberror-perl_0.17030-1_all.deb ... 120s Unpacking liberror-perl (0.17030-1) ... 120s Selecting previously unselected package git-man. 120s Preparing to unpack .../13-git-man_1%3a2.51.0-1ubuntu1_all.deb ... 120s Unpacking git-man (1:2.51.0-1ubuntu1) ... 120s Selecting previously unselected package git. 120s Preparing to unpack .../14-git_1%3a2.51.0-1ubuntu1_ppc64el.deb ... 120s Unpacking git (1:2.51.0-1ubuntu1) ... 120s Selecting previously unselected package libdatrie1:ppc64el. 120s Preparing to unpack .../15-libdatrie1_0.2.14-1_ppc64el.deb ... 120s Unpacking libdatrie1:ppc64el (0.2.14-1) ... 120s Selecting previously unselected package libjs-bootstrap. 120s Preparing to unpack .../16-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 120s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 120s Selecting previously unselected package libjs-jquery. 120s Preparing to unpack .../17-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 120s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 120s Selecting previously unselected package python3-configargparse. 120s Preparing to unpack .../18-python3-configargparse_1.7-2_all.deb ... 120s Unpacking python3-configargparse (1.7-2) ... 120s Selecting previously unselected package python3-connection-pool. 120s Preparing to unpack .../19-python3-connection-pool_0.0.3-2build1_all.deb ... 120s Unpacking python3-connection-pool (0.0.3-2build1) ... 120s Selecting previously unselected package python3-datrie. 120s Preparing to unpack .../20-python3-datrie_0.8.3-2_ppc64el.deb ... 120s Unpacking python3-datrie (0.8.3-2) ... 120s Selecting previously unselected package python3-decorator. 120s Preparing to unpack .../21-python3-decorator_5.2.1-2_all.deb ... 120s Unpacking python3-decorator (5.2.1-2) ... 120s Selecting previously unselected package python3-roman. 120s Preparing to unpack .../22-python3-roman_5.1-1_all.deb ... 120s Unpacking python3-roman (5.1-1) ... 120s Selecting previously unselected package python3-docutils. 120s Preparing to unpack .../23-python3-docutils_0.21.2+dfsg-2_all.deb ... 120s Unpacking python3-docutils (0.21.2+dfsg-2) ... 121s Selecting previously unselected package python3-dpath. 121s Preparing to unpack .../24-python3-dpath_2.2.0-1_all.deb ... 121s Unpacking python3-dpath (2.2.0-1) ... 121s Selecting previously unselected package python3-fastjsonschema. 121s Preparing to unpack .../25-python3-fastjsonschema_2.21.1-1_all.deb ... 121s Unpacking python3-fastjsonschema (2.21.1-1) ... 121s Selecting previously unselected package python3-smmap. 121s Preparing to unpack .../26-python3-smmap_6.0.0-1_all.deb ... 121s Unpacking python3-smmap (6.0.0-1) ... 121s Selecting previously unselected package python3-gitdb. 121s Preparing to unpack .../27-python3-gitdb_4.0.12-1_all.deb ... 121s Unpacking python3-gitdb (4.0.12-1) ... 121s Selecting previously unselected package python3-git. 121s Preparing to unpack .../28-python3-git_3.1.45-1_all.deb ... 121s Unpacking python3-git (3.1.45-1) ... 121s Selecting previously unselected package python3-humanfriendly. 121s Preparing to unpack .../29-python3-humanfriendly_10.0-6_all.deb ... 121s Unpacking python3-humanfriendly (10.0-6) ... 121s Selecting previously unselected package python3-platformdirs. 121s Preparing to unpack .../30-python3-platformdirs_4.4.0-1_all.deb ... 121s Unpacking python3-platformdirs (4.4.0-1) ... 121s Selecting previously unselected package python3-traitlets. 121s Preparing to unpack .../31-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 121s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 121s Selecting previously unselected package python3-jupyter-core. 121s Preparing to unpack .../32-python3-jupyter-core_5.7.2-5_all.deb ... 121s Unpacking python3-jupyter-core (5.7.2-5) ... 121s Selecting previously unselected package python3-nbformat. 121s Preparing to unpack .../33-python3-nbformat_5.9.1-1_all.deb ... 121s Unpacking python3-nbformat (5.9.1-1) ... 121s Selecting previously unselected package python3-plac. 121s Preparing to unpack .../34-python3-plac_1.4.3-2_all.deb ... 121s Unpacking python3-plac (1.4.3-2) ... 121s Selecting previously unselected package python3-psutil. 121s Preparing to unpack .../35-python3-psutil_7.1.0-1ubuntu1_ppc64el.deb ... 121s Unpacking python3-psutil (7.1.0-1ubuntu1) ... 121s Selecting previously unselected package coinor-cbc. 121s Preparing to unpack .../36-coinor-cbc_2.10.12+ds-1_ppc64el.deb ... 121s Unpacking coinor-cbc (2.10.12+ds-1) ... 121s Selecting previously unselected package python3-pulp. 121s Preparing to unpack .../37-python3-pulp_2.7.0+dfsg-4_all.deb ... 121s Unpacking python3-pulp (2.7.0+dfsg-4) ... 121s Selecting previously unselected package python3-ratelimiter. 121s Preparing to unpack .../38-python3-ratelimiter_1.2.0.post0-5_ppc64el.deb ... 121s Unpacking python3-ratelimiter (1.2.0.post0-5) ... 121s Selecting previously unselected package python3-retry. 121s Preparing to unpack .../39-python3-retry_0.9.2-4_all.deb ... 121s Unpacking python3-retry (0.9.2-4) ... 121s Selecting previously unselected package python3-wrapt. 121s Preparing to unpack .../40-python3-wrapt_1.17.3-2_ppc64el.deb ... 121s Unpacking python3-wrapt (1.17.3-2) ... 121s Selecting previously unselected package python3-smart-open. 121s Preparing to unpack .../41-python3-smart-open_7.1.0-1_all.deb ... 121s Unpacking python3-smart-open (7.1.0-1) ... 121s Selecting previously unselected package python3-stopit. 121s Preparing to unpack .../42-python3-stopit_1.1.2-3_all.deb ... 121s Unpacking python3-stopit (1.1.2-3) ... 121s Selecting previously unselected package python3-tabulate. 121s Preparing to unpack .../43-python3-tabulate_0.9.0-1_all.deb ... 121s Unpacking python3-tabulate (0.9.0-1) ... 121s Selecting previously unselected package python3-throttler. 121s Preparing to unpack .../44-python3-throttler_1.2.2-2_all.deb ... 121s Unpacking python3-throttler (1.2.2-2) ... 121s Selecting previously unselected package python3-toposort. 121s Preparing to unpack .../45-python3-toposort_1.10-2_all.deb ... 121s Unpacking python3-toposort (1.10-2) ... 121s Selecting previously unselected package python3-yte. 121s Preparing to unpack .../46-python3-yte_1.5.4-1_all.deb ... 121s Unpacking python3-yte (1.5.4-1) ... 121s Selecting previously unselected package snakemake. 121s Preparing to unpack .../47-snakemake_7.32.4-7_all.deb ... 121s Unpacking snakemake (7.32.4-7) ... 121s Setting up python3-toposort (1.10-2) ... 121s Setting up python3-configargparse (1.7-2) ... 121s Setting up libdatrie1:ppc64el (0.2.14-1) ... 121s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 121s Setting up python3-tabulate (0.9.0-1) ... 122s Setting up python3-plac (1.4.3-2) ... 122s Setting up python3-platformdirs (4.4.0-1) ... 122s Setting up python3-psutil (7.1.0-1ubuntu1) ... 122s Setting up python3-ratelimiter (1.2.0.post0-5) ... 122s Setting up liberror-perl (0.17030-1) ... 122s Setting up python3-roman (5.1-1) ... 122s Setting up python3-decorator (5.2.1-2) ... 122s Setting up libblas3:ppc64el (3.12.1-7) ... 122s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 122s Setting up python3-humanfriendly (10.0-6) ... 123s Setting up python3-dpath (2.2.0-1) ... 123s Setting up python3-connection-pool (0.0.3-2build1) ... 123s Setting up python3-wrapt (1.17.3-2) ... 123s Setting up python3-throttler (1.2.2-2) ... 123s Setting up python3-retry (0.9.2-4) ... 123s Setting up libgfortran5:ppc64el (15.2.0-9ubuntu1) ... 123s Setting up python3-fastjsonschema (2.21.1-1) ... 123s Setting up python3-stopit (1.1.2-3) ... 123s Setting up python3-traitlets (5.14.3+really5.14.3-1) ... 123s Setting up git-man (1:2.51.0-1ubuntu1) ... 123s Setting up sgml-base (1.31+nmu1) ... 124s Setting up python3-datrie (0.8.3-2) ... 124s Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 124s Setting up python3-smmap (6.0.0-1) ... 124s Setting up python3-jupyter-core (5.7.2-5) ... 124s Setting up libjs-bootstrap (3.4.1+dfsg-6) ... 124s Setting up liblapack3:ppc64el (3.12.1-7) ... 124s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 124s Setting up python3-smart-open (7.1.0-1) ... 124s Setting up python3-nbformat (5.9.1-1) ... 124s Setting up python3-gitdb (4.0.12-1) ... 124s Setting up python3-yte (1.5.4-1) ... 124s Setting up coinor-libcoinutils3v5:ppc64el (2.11.12+ds-1) ... 124s Setting up git (1:2.51.0-1ubuntu1) ... 124s Setting up coinor-libosi1v5:ppc64el (0.108.11+ds-1) ... 124s Setting up xml-core (0.19) ... 125s Setting up coinor-libclp1:ppc64el (1.17.10+ds-1) ... 125s Setting up python3-git (3.1.45-1) ... 125s Setting up coinor-libcgl1:ppc64el (0.60.9+ds-1) ... 125s Setting up coinor-libcbc3.1:ppc64el (2.10.12+ds-1) ... 125s Setting up coinor-cbc (2.10.12+ds-1) ... 125s Setting up python3-pulp (2.7.0+dfsg-4) ... 125s /usr/lib/python3/dist-packages/pulp/apis/xpress_api.py:325: SyntaxWarning: invalid escape sequence '\ ' 125s otherwise be interpreted by the Tcl shell: \ $ " [ 125s Processing triggers for man-db (2.13.1-1) ... 127s Processing triggers for libc-bin (2.42-2ubuntu2) ... 127s Processing triggers for sgml-base (1.31+nmu1) ... 127s Setting up docutils-common (0.21.2+dfsg-2) ... 127s Processing triggers for sgml-base (1.31+nmu1) ... 127s Setting up python3-docutils (0.21.2+dfsg-2) ... 127s Setting up snakemake (7.32.4-7) ... 129s autopkgtest [14:25:15]: test command1: cp tests/test_bash/Snakefile $AUTOPKGTEST_TMP && cd $AUTOPKGTEST_TMP && snakemake --cores 1 && grep -e bash test.out 129s autopkgtest [14:25:15]: test command1: [----------------------- 130s Building DAG of jobs... 130s Using shell: /usr/bin/bash 130s Provided cores: 1 (use --cores to define parallelism) 130s Rules claiming more threads will be scaled down. 130s Job stats: 130s job count 130s ----- ------- 130s a 1 130s total 1 130s 130s Select jobs to execute... 130s 130s [Tue Dec 2 14:25:16 2025] 130s rule a: 130s output: test.out 130s jobid: 0 130s reason: Missing output files: test.out 130s resources: tmpdir=/tmp 130s 130s [Tue Dec 2 14:25:16 2025] 130s Finished job 0. 130s 1 of 1 steps (100%) done 130s Complete log: .snakemake/log/2025-12-02T142515.864474.snakemake.log 130s bash 130s autopkgtest [14:25:16]: test command1: -----------------------] 131s autopkgtest [14:25:17]: test command1: - - - - - - - - - - results - - - - - - - - - - 131s command1 PASS 131s autopkgtest [14:25:17]: test run-unit-test: preparing testbed 131s Reading package lists... 132s Building dependency tree... 132s Reading state information... 132s Solving dependencies... 132s The following NEW packages will be installed: 132s environment-modules fontconfig fontconfig-config fonts-dejavu-core 132s fonts-dejavu-mono glpk-utils graphviz libamd3 libann0 libaom3 libcairo2 132s libcdt5 libcgraph6 libcolamd3 libde265-0 libdeflate0 libfontconfig1 libgd3 132s libglpk40 libgomp1 libgraphite2-3 libgts-0.7-5t64 libgvc6 libgvpr2 132s libharfbuzz0b libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libice6 132s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblab-gamut1 liblerc4 132s libltdl7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 132s libpaper2 libpathplan4 libpixman-1-0 libsharpyuv0 libsm6 132s libsuitesparseconfig7 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 132s libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxmu6 libxpm4 132s libxrender1 libxss1 libxt6t64 python3-ftputil python3-iniconfig 132s python3-numpy python3-numpy-dev python3-pandas python3-pandas-lib 132s python3-pluggy python3-pytest python3-pytest-mock python3-pytz 132s python3-requests-mock r-base-core stress tcl8.6 unzip x11-common xdg-utils 132s zip 132s 0 upgraded, 79 newly installed, 0 to remove and 0 not upgraded. 132s Need to get 63.8 MB of archives. 132s After this operation, 212 MB of additional disk space will be used. 132s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy-dev ppc64el 1:2.2.4+ds-1ubuntu1 [153 kB] 132s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy ppc64el 1:2.2.4+ds-1ubuntu1 [4887 kB] 134s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtcl8.6 ppc64el 8.6.17+dfsg-1 [1239 kB] 134s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el tcl8.6 ppc64el 8.6.17+dfsg-1 [14.8 kB] 134s Get:5 http://ftpmaster.internal/ubuntu resolute/universe ppc64el environment-modules ppc64el 5.6.0-1 [364 kB] 134s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 134s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 134s Get:8 http://ftpmaster.internal/ubuntu resolute/main ppc64el fontconfig-config ppc64el 2.15.0-2.3ubuntu1 [38.1 kB] 134s Get:9 http://ftpmaster.internal/ubuntu resolute/main ppc64el libfontconfig1 ppc64el 2.15.0-2.3ubuntu1 [188 kB] 134s Get:10 http://ftpmaster.internal/ubuntu resolute/main ppc64el fontconfig ppc64el 2.15.0-2.3ubuntu1 [192 kB] 134s Get:11 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgomp1 ppc64el 15.2.0-9ubuntu1 [169 kB] 134s Get:12 http://ftpmaster.internal/ubuntu resolute/main ppc64el libsuitesparseconfig7 ppc64el 1:7.11.0+dfsg-2 [22.0 kB] 134s Get:13 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libamd3 ppc64el 1:7.11.0+dfsg-2 [44.5 kB] 134s Get:14 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcolamd3 ppc64el 1:7.11.0+dfsg-2 [31.0 kB] 134s Get:15 http://ftpmaster.internal/ubuntu resolute/main ppc64el libltdl7 ppc64el 2.5.4-7 [51.2 kB] 134s Get:16 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libglpk40 ppc64el 5.0-2 [488 kB] 134s Get:17 http://ftpmaster.internal/ubuntu resolute/universe ppc64el glpk-utils ppc64el 5.0-2 [227 kB] 134s Get:18 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libann0 ppc64el 1.1.2+doc-9build1 [30.1 kB] 134s Get:19 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libcdt5 ppc64el 2.42.4-3build2 [27.7 kB] 134s Get:20 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libcgraph6 ppc64el 2.42.4-3build2 [54.6 kB] 134s Get:21 http://ftpmaster.internal/ubuntu resolute/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1 [22.3 kB] 134s Get:22 http://ftpmaster.internal/ubuntu resolute/main ppc64el libaom3 ppc64el 3.13.1-2 [2908 kB] 134s Get:23 http://ftpmaster.internal/ubuntu resolute/main ppc64el libheif-plugin-aomdec ppc64el 1.20.2-2build1 [12.4 kB] 134s Get:24 http://ftpmaster.internal/ubuntu resolute/main ppc64el libde265-0 ppc64el 1.0.16-1 [288 kB] 134s Get:25 http://ftpmaster.internal/ubuntu resolute/main ppc64el libheif-plugin-libde265 ppc64el 1.20.2-2build1 [9858 B] 134s Get:26 http://ftpmaster.internal/ubuntu resolute/main ppc64el libheif1 ppc64el 1.20.2-2build1 [586 kB] 135s Get:27 http://ftpmaster.internal/ubuntu resolute/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 135s Get:28 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-4ubuntu2 [215 kB] 135s Get:29 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 135s Get:30 http://ftpmaster.internal/ubuntu resolute/main ppc64el libdeflate0 ppc64el 1.23-2 [63.3 kB] 135s Get:31 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB] 135s Get:32 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu1 [298 kB] 135s Get:33 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebp7 ppc64el 1.5.0-0.1 [315 kB] 135s Get:34 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtiff6 ppc64el 4.7.0-3ubuntu3 [307 kB] 135s Get:35 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxpm4 ppc64el 1:3.5.17-1build2 [49.9 kB] 135s Get:36 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgd3 ppc64el 2.3.3-13ubuntu1 [165 kB] 135s Get:37 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libgts-0.7-5t64 ppc64el 0.7.6+darcs121130-5.2build1 [187 kB] 135s Get:38 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpixman-1-0 ppc64el 0.46.4-1 [347 kB] 135s Get:39 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-render0 ppc64el 1.17.0-2build1 [17.2 kB] 135s Get:40 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-shm0 ppc64el 1.17.0-2build1 [6078 B] 135s Get:41 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxrender1 ppc64el 1:0.9.12-1 [23.0 kB] 135s Get:42 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcairo2 ppc64el 1.18.4-1build1 [759 kB] 135s Get:43 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 135s Get:44 http://ftpmaster.internal/ubuntu resolute/main ppc64el libharfbuzz0b ppc64el 12.1.0-1 [679 kB] 135s Get:45 http://ftpmaster.internal/ubuntu resolute/main ppc64el libthai-data all 0.1.29-2build1 [158 kB] 135s Get:46 http://ftpmaster.internal/ubuntu resolute/main ppc64el libthai0 ppc64el 0.1.29-2build1 [21.8 kB] 135s Get:47 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpango-1.0-0 ppc64el 1.56.3-2 [281 kB] 135s Get:48 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpangoft2-1.0-0 ppc64el 1.56.3-2 [59.1 kB] 135s Get:49 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpangocairo-1.0-0 ppc64el 1.56.3-2 [31.0 kB] 135s Get:50 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libpathplan4 ppc64el 2.42.4-3build2 [29.8 kB] 135s Get:51 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libgvc6 ppc64el 2.42.4-3build2 [915 kB] 135s Get:52 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libgvpr2 ppc64el 2.42.4-3build2 [216 kB] 135s Get:53 http://ftpmaster.internal/ubuntu resolute/universe ppc64el liblab-gamut1 ppc64el 2.42.4-3build2 [1789 kB] 135s Get:54 http://ftpmaster.internal/ubuntu resolute/main ppc64el x11-common all 1:7.7+24ubuntu1 [22.4 kB] 135s Get:55 http://ftpmaster.internal/ubuntu resolute/main ppc64el libice6 ppc64el 2:1.1.1-1 [49.9 kB] 135s Get:56 http://ftpmaster.internal/ubuntu resolute/main ppc64el libsm6 ppc64el 2:1.2.6-1 [18.6 kB] 135s Get:57 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxt6t64 ppc64el 1:1.2.1-1.3 [203 kB] 135s Get:58 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxmu6 ppc64el 2:1.1.3-3build3 [56.8 kB] 135s Get:59 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxaw7 ppc64el 2:1.0.16-1 [230 kB] 135s Get:60 http://ftpmaster.internal/ubuntu resolute/universe ppc64el graphviz ppc64el 2.42.4-3build2 [867 kB] 135s Get:61 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpaper2 ppc64el 2.2.5-0.3 [18.0 kB] 135s Get:62 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpaper-utils ppc64el 2.2.5-0.3 [15.6 kB] 135s Get:63 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB] 135s Get:64 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B] 135s Get:65 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtk8.6 ppc64el 8.6.17-1 [968 kB] 135s Get:66 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-ftputil all 5.1.0-1 [41.1 kB] 135s Get:67 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-iniconfig all 2.1.0-1 [6840 B] 135s Get:68 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pytz all 2025.2-4 [32.3 kB] 135s Get:69 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pandas-lib ppc64el 2.3.3+dfsg-1ubuntu1 [7666 kB] 136s Get:70 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pandas all 2.3.3+dfsg-1ubuntu1 [2948 kB] 136s Get:71 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pluggy all 1.6.0-1 [21.0 kB] 136s Get:72 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pytest all 8.3.5-2 [252 kB] 136s Get:73 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pytest-mock all 3.15.1-1 [11.9 kB] 136s Get:74 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-requests-mock all 1.12.1-3 [17.8 kB] 136s Get:75 http://ftpmaster.internal/ubuntu resolute/main ppc64el zip ppc64el 3.0-15ubuntu2 [198 kB] 136s Get:76 http://ftpmaster.internal/ubuntu resolute/main ppc64el unzip ppc64el 6.0-28ubuntu7 [201 kB] 136s Get:77 http://ftpmaster.internal/ubuntu resolute/main ppc64el xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 136s Get:78 http://ftpmaster.internal/ubuntu resolute/universe ppc64el r-base-core ppc64el 4.5.2-1 [29.3 MB] 137s Get:79 http://ftpmaster.internal/ubuntu resolute/universe ppc64el stress ppc64el 1.0.7-1 [17.6 kB] 138s Preconfiguring packages ... 138s Fetched 63.8 MB in 6s (11.4 MB/s) 138s Selecting previously unselected package python3-numpy-dev:ppc64el. 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 122475 files and directories currently installed.) 138s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_ppc64el.deb ... 138s Unpacking python3-numpy-dev:ppc64el (1:2.2.4+ds-1ubuntu1) ... 138s Selecting previously unselected package python3-numpy. 138s Preparing to unpack .../01-python3-numpy_1%3a2.2.4+ds-1ubuntu1_ppc64el.deb ... 138s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 138s Selecting previously unselected package libtcl8.6:ppc64el. 138s Preparing to unpack .../02-libtcl8.6_8.6.17+dfsg-1_ppc64el.deb ... 138s Unpacking libtcl8.6:ppc64el (8.6.17+dfsg-1) ... 138s Selecting previously unselected package tcl8.6. 138s Preparing to unpack .../03-tcl8.6_8.6.17+dfsg-1_ppc64el.deb ... 138s Unpacking tcl8.6 (8.6.17+dfsg-1) ... 138s Selecting previously unselected package environment-modules. 138s Preparing to unpack .../04-environment-modules_5.6.0-1_ppc64el.deb ... 138s Unpacking environment-modules (5.6.0-1) ... 138s Selecting previously unselected package fonts-dejavu-mono. 138s Preparing to unpack .../05-fonts-dejavu-mono_2.37-8_all.deb ... 138s Unpacking fonts-dejavu-mono (2.37-8) ... 138s Selecting previously unselected package fonts-dejavu-core. 138s Preparing to unpack .../06-fonts-dejavu-core_2.37-8_all.deb ... 138s Unpacking fonts-dejavu-core (2.37-8) ... 138s Selecting previously unselected package fontconfig-config. 138s Preparing to unpack .../07-fontconfig-config_2.15.0-2.3ubuntu1_ppc64el.deb ... 139s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 139s Selecting previously unselected package libfontconfig1:ppc64el. 139s Preparing to unpack .../08-libfontconfig1_2.15.0-2.3ubuntu1_ppc64el.deb ... 139s Unpacking libfontconfig1:ppc64el (2.15.0-2.3ubuntu1) ... 139s Selecting previously unselected package fontconfig. 139s Preparing to unpack .../09-fontconfig_2.15.0-2.3ubuntu1_ppc64el.deb ... 139s Unpacking fontconfig (2.15.0-2.3ubuntu1) ... 139s Selecting previously unselected package libgomp1:ppc64el. 139s Preparing to unpack .../10-libgomp1_15.2.0-9ubuntu1_ppc64el.deb ... 139s Unpacking libgomp1:ppc64el (15.2.0-9ubuntu1) ... 139s Selecting previously unselected package libsuitesparseconfig7:ppc64el. 139s Preparing to unpack .../11-libsuitesparseconfig7_1%3a7.11.0+dfsg-2_ppc64el.deb ... 139s Unpacking libsuitesparseconfig7:ppc64el (1:7.11.0+dfsg-2) ... 139s Selecting previously unselected package libamd3:ppc64el. 139s Preparing to unpack .../12-libamd3_1%3a7.11.0+dfsg-2_ppc64el.deb ... 139s Unpacking libamd3:ppc64el (1:7.11.0+dfsg-2) ... 139s Selecting previously unselected package libcolamd3:ppc64el. 139s Preparing to unpack .../13-libcolamd3_1%3a7.11.0+dfsg-2_ppc64el.deb ... 139s Unpacking libcolamd3:ppc64el (1:7.11.0+dfsg-2) ... 139s Selecting previously unselected package libltdl7:ppc64el. 139s Preparing to unpack .../14-libltdl7_2.5.4-7_ppc64el.deb ... 139s Unpacking libltdl7:ppc64el (2.5.4-7) ... 139s Selecting previously unselected package libglpk40:ppc64el. 139s Preparing to unpack .../15-libglpk40_5.0-2_ppc64el.deb ... 139s Unpacking libglpk40:ppc64el (5.0-2) ... 139s Selecting previously unselected package glpk-utils. 139s Preparing to unpack .../16-glpk-utils_5.0-2_ppc64el.deb ... 139s Unpacking glpk-utils (5.0-2) ... 139s Selecting previously unselected package libann0. 139s Preparing to unpack .../17-libann0_1.1.2+doc-9build1_ppc64el.deb ... 139s Unpacking libann0 (1.1.2+doc-9build1) ... 139s Selecting previously unselected package libcdt5:ppc64el. 139s Preparing to unpack .../18-libcdt5_2.42.4-3build2_ppc64el.deb ... 139s Unpacking libcdt5:ppc64el (2.42.4-3build2) ... 139s Selecting previously unselected package libcgraph6:ppc64el. 139s Preparing to unpack .../19-libcgraph6_2.42.4-3build2_ppc64el.deb ... 139s Unpacking libcgraph6:ppc64el (2.42.4-3build2) ... 139s Selecting previously unselected package libsharpyuv0:ppc64el. 139s Preparing to unpack .../20-libsharpyuv0_1.5.0-0.1_ppc64el.deb ... 139s Unpacking libsharpyuv0:ppc64el (1.5.0-0.1) ... 139s Selecting previously unselected package libaom3:ppc64el. 139s Preparing to unpack .../21-libaom3_3.13.1-2_ppc64el.deb ... 139s Unpacking libaom3:ppc64el (3.13.1-2) ... 139s Selecting previously unselected package libheif-plugin-aomdec:ppc64el. 139s Preparing to unpack .../22-libheif-plugin-aomdec_1.20.2-2build1_ppc64el.deb ... 139s Unpacking libheif-plugin-aomdec:ppc64el (1.20.2-2build1) ... 139s Selecting previously unselected package libde265-0:ppc64el. 139s Preparing to unpack .../23-libde265-0_1.0.16-1_ppc64el.deb ... 139s Unpacking libde265-0:ppc64el (1.0.16-1) ... 139s Selecting previously unselected package libheif-plugin-libde265:ppc64el. 139s Preparing to unpack .../24-libheif-plugin-libde265_1.20.2-2build1_ppc64el.deb ... 139s Unpacking libheif-plugin-libde265:ppc64el (1.20.2-2build1) ... 139s Selecting previously unselected package libheif1:ppc64el. 139s Preparing to unpack .../25-libheif1_1.20.2-2build1_ppc64el.deb ... 139s Unpacking libheif1:ppc64el (1.20.2-2build1) ... 139s Selecting previously unselected package libimagequant0:ppc64el. 139s Preparing to unpack .../26-libimagequant0_2.18.0-1build1_ppc64el.deb ... 139s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 139s Selecting previously unselected package libjpeg-turbo8:ppc64el. 139s Preparing to unpack .../27-libjpeg-turbo8_2.1.5-4ubuntu2_ppc64el.deb ... 139s Unpacking libjpeg-turbo8:ppc64el (2.1.5-4ubuntu2) ... 139s Selecting previously unselected package libjpeg8:ppc64el. 139s Preparing to unpack .../28-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 139s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 139s Selecting previously unselected package libdeflate0:ppc64el. 139s Preparing to unpack .../29-libdeflate0_1.23-2_ppc64el.deb ... 139s Unpacking libdeflate0:ppc64el (1.23-2) ... 140s Selecting previously unselected package libjbig0:ppc64el. 140s Preparing to unpack .../30-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ... 140s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ... 140s Selecting previously unselected package liblerc4:ppc64el. 140s Preparing to unpack .../31-liblerc4_4.0.0+ds-5ubuntu1_ppc64el.deb ... 140s Unpacking liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 140s Selecting previously unselected package libwebp7:ppc64el. 140s Preparing to unpack .../32-libwebp7_1.5.0-0.1_ppc64el.deb ... 140s Unpacking libwebp7:ppc64el (1.5.0-0.1) ... 140s Selecting previously unselected package libtiff6:ppc64el. 140s Preparing to unpack .../33-libtiff6_4.7.0-3ubuntu3_ppc64el.deb ... 140s Unpacking libtiff6:ppc64el (4.7.0-3ubuntu3) ... 140s Selecting previously unselected package libxpm4:ppc64el. 140s Preparing to unpack .../34-libxpm4_1%3a3.5.17-1build2_ppc64el.deb ... 140s Unpacking libxpm4:ppc64el (1:3.5.17-1build2) ... 140s Selecting previously unselected package libgd3:ppc64el. 140s Preparing to unpack .../35-libgd3_2.3.3-13ubuntu1_ppc64el.deb ... 140s Unpacking libgd3:ppc64el (2.3.3-13ubuntu1) ... 140s Selecting previously unselected package libgts-0.7-5t64:ppc64el. 140s Preparing to unpack .../36-libgts-0.7-5t64_0.7.6+darcs121130-5.2build1_ppc64el.deb ... 140s Unpacking libgts-0.7-5t64:ppc64el (0.7.6+darcs121130-5.2build1) ... 140s Selecting previously unselected package libpixman-1-0:ppc64el. 140s Preparing to unpack .../37-libpixman-1-0_0.46.4-1_ppc64el.deb ... 140s Unpacking libpixman-1-0:ppc64el (0.46.4-1) ... 140s Selecting previously unselected package libxcb-render0:ppc64el. 140s Preparing to unpack .../38-libxcb-render0_1.17.0-2build1_ppc64el.deb ... 140s Unpacking libxcb-render0:ppc64el (1.17.0-2build1) ... 140s Selecting previously unselected package libxcb-shm0:ppc64el. 140s Preparing to unpack .../39-libxcb-shm0_1.17.0-2build1_ppc64el.deb ... 140s Unpacking libxcb-shm0:ppc64el (1.17.0-2build1) ... 140s Selecting previously unselected package libxrender1:ppc64el. 140s Preparing to unpack .../40-libxrender1_1%3a0.9.12-1_ppc64el.deb ... 140s Unpacking libxrender1:ppc64el (1:0.9.12-1) ... 140s Selecting previously unselected package libcairo2:ppc64el. 140s Preparing to unpack .../41-libcairo2_1.18.4-1build1_ppc64el.deb ... 140s Unpacking libcairo2:ppc64el (1.18.4-1build1) ... 140s Selecting previously unselected package libgraphite2-3:ppc64el. 140s Preparing to unpack .../42-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 140s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 140s Selecting previously unselected package libharfbuzz0b:ppc64el. 140s Preparing to unpack .../43-libharfbuzz0b_12.1.0-1_ppc64el.deb ... 140s Unpacking libharfbuzz0b:ppc64el (12.1.0-1) ... 140s Selecting previously unselected package libthai-data. 140s Preparing to unpack .../44-libthai-data_0.1.29-2build1_all.deb ... 140s Unpacking libthai-data (0.1.29-2build1) ... 140s Selecting previously unselected package libthai0:ppc64el. 140s Preparing to unpack .../45-libthai0_0.1.29-2build1_ppc64el.deb ... 140s Unpacking libthai0:ppc64el (0.1.29-2build1) ... 140s Selecting previously unselected package libpango-1.0-0:ppc64el. 140s Preparing to unpack .../46-libpango-1.0-0_1.56.3-2_ppc64el.deb ... 140s Unpacking libpango-1.0-0:ppc64el (1.56.3-2) ... 140s Selecting previously unselected package libpangoft2-1.0-0:ppc64el. 140s Preparing to unpack .../47-libpangoft2-1.0-0_1.56.3-2_ppc64el.deb ... 140s Unpacking libpangoft2-1.0-0:ppc64el (1.56.3-2) ... 140s Selecting previously unselected package libpangocairo-1.0-0:ppc64el. 140s Preparing to unpack .../48-libpangocairo-1.0-0_1.56.3-2_ppc64el.deb ... 140s Unpacking libpangocairo-1.0-0:ppc64el (1.56.3-2) ... 140s Selecting previously unselected package libpathplan4:ppc64el. 140s Preparing to unpack .../49-libpathplan4_2.42.4-3build2_ppc64el.deb ... 140s Unpacking libpathplan4:ppc64el (2.42.4-3build2) ... 140s Selecting previously unselected package libgvc6. 140s Preparing to unpack .../50-libgvc6_2.42.4-3build2_ppc64el.deb ... 140s Unpacking libgvc6 (2.42.4-3build2) ... 140s Selecting previously unselected package libgvpr2:ppc64el. 140s Preparing to unpack .../51-libgvpr2_2.42.4-3build2_ppc64el.deb ... 140s Unpacking libgvpr2:ppc64el (2.42.4-3build2) ... 140s Selecting previously unselected package liblab-gamut1:ppc64el. 140s Preparing to unpack .../52-liblab-gamut1_2.42.4-3build2_ppc64el.deb ... 140s Unpacking liblab-gamut1:ppc64el (2.42.4-3build2) ... 140s Selecting previously unselected package x11-common. 140s Preparing to unpack .../53-x11-common_1%3a7.7+24ubuntu1_all.deb ... 140s Unpacking x11-common (1:7.7+24ubuntu1) ... 140s Selecting previously unselected package libice6:ppc64el. 140s Preparing to unpack .../54-libice6_2%3a1.1.1-1_ppc64el.deb ... 140s Unpacking libice6:ppc64el (2:1.1.1-1) ... 140s Selecting previously unselected package libsm6:ppc64el. 140s Preparing to unpack .../55-libsm6_2%3a1.2.6-1_ppc64el.deb ... 140s Unpacking libsm6:ppc64el (2:1.2.6-1) ... 140s Selecting previously unselected package libxt6t64:ppc64el. 140s Preparing to unpack .../56-libxt6t64_1%3a1.2.1-1.3_ppc64el.deb ... 140s Unpacking libxt6t64:ppc64el (1:1.2.1-1.3) ... 140s Selecting previously unselected package libxmu6:ppc64el. 140s Preparing to unpack .../57-libxmu6_2%3a1.1.3-3build3_ppc64el.deb ... 140s Unpacking libxmu6:ppc64el (2:1.1.3-3build3) ... 140s Selecting previously unselected package libxaw7:ppc64el. 140s Preparing to unpack .../58-libxaw7_2%3a1.0.16-1_ppc64el.deb ... 140s Unpacking libxaw7:ppc64el (2:1.0.16-1) ... 140s Selecting previously unselected package graphviz. 140s Preparing to unpack .../59-graphviz_2.42.4-3build2_ppc64el.deb ... 140s Unpacking graphviz (2.42.4-3build2) ... 140s Selecting previously unselected package libpaper2:ppc64el. 140s Preparing to unpack .../60-libpaper2_2.2.5-0.3_ppc64el.deb ... 140s Unpacking libpaper2:ppc64el (2.2.5-0.3) ... 140s Selecting previously unselected package libpaper-utils. 140s Preparing to unpack .../61-libpaper-utils_2.2.5-0.3_ppc64el.deb ... 140s Unpacking libpaper-utils (2.2.5-0.3) ... 140s Selecting previously unselected package libxft2:ppc64el. 140s Preparing to unpack .../62-libxft2_2.3.6-1build1_ppc64el.deb ... 140s Unpacking libxft2:ppc64el (2.3.6-1build1) ... 140s Selecting previously unselected package libxss1:ppc64el. 140s Preparing to unpack .../63-libxss1_1%3a1.2.3-1build3_ppc64el.deb ... 140s Unpacking libxss1:ppc64el (1:1.2.3-1build3) ... 140s Selecting previously unselected package libtk8.6:ppc64el. 140s Preparing to unpack .../64-libtk8.6_8.6.17-1_ppc64el.deb ... 140s Unpacking libtk8.6:ppc64el (8.6.17-1) ... 141s Selecting previously unselected package python3-ftputil. 141s Preparing to unpack .../65-python3-ftputil_5.1.0-1_all.deb ... 141s Unpacking python3-ftputil (5.1.0-1) ... 141s Selecting previously unselected package python3-iniconfig. 141s Preparing to unpack .../66-python3-iniconfig_2.1.0-1_all.deb ... 141s Unpacking python3-iniconfig (2.1.0-1) ... 141s Selecting previously unselected package python3-pytz. 141s Preparing to unpack .../67-python3-pytz_2025.2-4_all.deb ... 141s Unpacking python3-pytz (2025.2-4) ... 141s Selecting previously unselected package python3-pandas-lib:ppc64el. 141s Preparing to unpack .../68-python3-pandas-lib_2.3.3+dfsg-1ubuntu1_ppc64el.deb ... 141s Unpacking python3-pandas-lib:ppc64el (2.3.3+dfsg-1ubuntu1) ... 141s Selecting previously unselected package python3-pandas. 141s Preparing to unpack .../69-python3-pandas_2.3.3+dfsg-1ubuntu1_all.deb ... 141s Unpacking python3-pandas (2.3.3+dfsg-1ubuntu1) ... 141s Selecting previously unselected package python3-pluggy. 141s Preparing to unpack .../70-python3-pluggy_1.6.0-1_all.deb ... 141s Unpacking python3-pluggy (1.6.0-1) ... 141s Selecting previously unselected package python3-pytest. 141s Preparing to unpack .../71-python3-pytest_8.3.5-2_all.deb ... 141s Unpacking python3-pytest (8.3.5-2) ... 141s Selecting previously unselected package python3-pytest-mock. 141s Preparing to unpack .../72-python3-pytest-mock_3.15.1-1_all.deb ... 141s Unpacking python3-pytest-mock (3.15.1-1) ... 141s Selecting previously unselected package python3-requests-mock. 141s Preparing to unpack .../73-python3-requests-mock_1.12.1-3_all.deb ... 141s Unpacking python3-requests-mock (1.12.1-3) ... 141s Selecting previously unselected package zip. 141s Preparing to unpack .../74-zip_3.0-15ubuntu2_ppc64el.deb ... 141s Unpacking zip (3.0-15ubuntu2) ... 141s Selecting previously unselected package unzip. 141s Preparing to unpack .../75-unzip_6.0-28ubuntu7_ppc64el.deb ... 141s Unpacking unzip (6.0-28ubuntu7) ... 141s Selecting previously unselected package xdg-utils. 141s Preparing to unpack .../76-xdg-utils_1.2.1-2ubuntu1_all.deb ... 141s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 141s Selecting previously unselected package r-base-core. 141s Preparing to unpack .../77-r-base-core_4.5.2-1_ppc64el.deb ... 141s Unpacking r-base-core (4.5.2-1) ... 142s Selecting previously unselected package stress. 142s Preparing to unpack .../78-stress_1.0.7-1_ppc64el.deb ... 142s Unpacking stress (1.0.7-1) ... 142s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 142s Setting up python3-iniconfig (2.1.0-1) ... 142s Setting up libpixman-1-0:ppc64el (0.46.4-1) ... 142s Setting up libsharpyuv0:ppc64el (1.5.0-0.1) ... 142s Setting up libaom3:ppc64el (3.13.1-2) ... 142s Setting up python3-ftputil (5.1.0-1) ... 142s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 142s Setting up libxpm4:ppc64el (1:3.5.17-1build2) ... 142s Setting up libxrender1:ppc64el (1:0.9.12-1) ... 142s Setting up libxcb-render0:ppc64el (1.17.0-2build1) ... 142s Setting up stress (1.0.7-1) ... 142s Setting up unzip (6.0-28ubuntu7) ... 142s Setting up liblab-gamut1:ppc64el (2.42.4-3build2) ... 142s Setting up x11-common (1:7.7+24ubuntu1) ... 143s Setting up libdeflate0:ppc64el (1.23-2) ... 143s Setting up python3-pytz (2025.2-4) ... 143s Setting up libxcb-shm0:ppc64el (1.17.0-2build1) ... 143s Setting up libgomp1:ppc64el (15.2.0-9ubuntu1) ... 143s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ... 143s Setting up zip (3.0-15ubuntu2) ... 143s Setting up libpathplan4:ppc64el (2.42.4-3build2) ... 143s Setting up libann0 (1.1.2+doc-9build1) ... 143s Setting up python3-requests-mock (1.12.1-3) ... 143s Setting up libimagequant0:ppc64el (2.18.0-1build1) ... 143s Setting up fonts-dejavu-mono (2.37-8) ... 143s Setting up python3-numpy-dev:ppc64el (1:2.2.4+ds-1ubuntu1) ... 143s Setting up libtcl8.6:ppc64el (8.6.17+dfsg-1) ... 143s Setting up fonts-dejavu-core (2.37-8) ... 143s Setting up libjpeg-turbo8:ppc64el (2.1.5-4ubuntu2) ... 143s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 145s Setting up libltdl7:ppc64el (2.5.4-7) ... 145s Setting up python3-pluggy (1.6.0-1) ... 145s Setting up libwebp7:ppc64el (1.5.0-0.1) ... 145s Setting up libsuitesparseconfig7:ppc64el (1:7.11.0+dfsg-2) ... 145s Setting up libharfbuzz0b:ppc64el (12.1.0-1) ... 145s Setting up libthai-data (0.1.29-2build1) ... 145s Setting up libgts-0.7-5t64:ppc64el (0.7.6+darcs121130-5.2build1) ... 145s Setting up libcdt5:ppc64el (2.42.4-3build2) ... 145s Setting up libcgraph6:ppc64el (2.42.4-3build2) ... 145s Setting up libxss1:ppc64el (1:1.2.3-1build3) ... 145s Setting up libpaper2:ppc64el (2.2.5-0.3) ... 145s Setting up libde265-0:ppc64el (1.0.16-1) ... 145s Setting up xdg-utils (1.2.1-2ubuntu1) ... 145s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 145s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 145s Setting up libice6:ppc64el (2:1.1.1-1) ... 145s Setting up tcl8.6 (8.6.17+dfsg-1) ... 145s Setting up libamd3:ppc64el (1:7.11.0+dfsg-2) ... 145s Setting up libcolamd3:ppc64el (1:7.11.0+dfsg-2) ... 145s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 145s Setting up python3-pytest (8.3.5-2) ... 146s Setting up python3-pandas-lib:ppc64el (2.3.3+dfsg-1ubuntu1) ... 146s Setting up libpaper-utils (2.2.5-0.3) ... 146s Setting up libthai0:ppc64el (0.1.29-2build1) ... 146s Setting up python3-pandas (2.3.3+dfsg-1ubuntu1) ... 151s Setting up libglpk40:ppc64el (5.0-2) ... 151s Setting up glpk-utils (5.0-2) ... 151s Setting up libgvpr2:ppc64el (2.42.4-3build2) ... 151s Setting up python3-pytest-mock (3.15.1-1) ... 151s Setting up libtiff6:ppc64el (4.7.0-3ubuntu3) ... 151s Setting up environment-modules (5.6.0-1) ... 151s Setting up libsm6:ppc64el (2:1.2.6-1) ... 151s Setting up libxt6t64:ppc64el (1:1.2.1-1.3) ... 151s Setting up libxmu6:ppc64el (2:1.1.3-3build3) ... 151s Setting up libxaw7:ppc64el (2:1.0.16-1) ... 151s Setting up libheif-plugin-aomdec:ppc64el (1.20.2-2build1) ... 152s Setting up libheif-plugin-libde265:ppc64el (1.20.2-2build1) ... 152s Setting up libheif1:ppc64el (1.20.2-2build1) ... 152s Processing triggers for man-db (2.13.1-1) ... 152s Processing triggers for sgml-base (1.31+nmu1) ... 152s Setting up libfontconfig1:ppc64el (2.15.0-2.3ubuntu1) ... 152s Processing triggers for install-info (7.2-5) ... 153s Setting up fontconfig (2.15.0-2.3ubuntu1) ... 155s Regenerating fonts cache... done. 155s Setting up libxft2:ppc64el (2.3.6-1build1) ... 155s Setting up libtk8.6:ppc64el (8.6.17-1) ... 155s Processing triggers for libc-bin (2.42-2ubuntu2) ... 155s Setting up libpango-1.0-0:ppc64el (1.56.3-2) ... 155s Setting up libcairo2:ppc64el (1.18.4-1build1) ... 155s Setting up libgd3:ppc64el (2.3.3-13ubuntu1) ... 155s Setting up libpangoft2-1.0-0:ppc64el (1.56.3-2) ... 155s Setting up libpangocairo-1.0-0:ppc64el (1.56.3-2) ... 155s Setting up r-base-core (4.5.2-1) ... 155s Creating config file /etc/R/Renviron with new version 155s Setting up libgvc6 (2.42.4-3build2) ... 155s Setting up graphviz (2.42.4-3build2) ... 155s Processing triggers for libc-bin (2.42-2ubuntu2) ... 156s autopkgtest [14:25:42]: test run-unit-test: [----------------------- 157s ============================= test session starts ============================== 157s platform linux -- Python 3.13.9, pytest-8.3.5, pluggy-1.6.0 -- /usr/bin/python3 157s cachedir: .pytest_cache 157s rootdir: /tmp/autopkgtest.wbr0uT/autopkgtest_tmp 157s plugins: requests_mock-1.12.1, mock-3.15.1, typeguard-4.4.2 163s collecting ... collected 395 items / 97 deselected / 298 selected 163s 163s tests/test_expand.py::test_simple_expand PASSED [ 0%] 163s tests/test_expand.py::test_allow_missing PASSED [ 0%] 163s tests/test_google_lifesciences.py::test_google_lifesciences SKIPPED [ 1%] 163s tests/test_google_lifesciences.py::test_touch_remote_prefix SKIPPED [ 1%] 163s tests/test_google_lifesciences.py::test_cloud_checkpoints_issue574 SKIPPED [ 1%] 163s tests/test_io.py::test_wildcard_regex PASSED [ 2%] 163s tests/test_io.py::test_expand PASSED [ 2%] 163s tests/test_kubernetes.py::test_kubernetes_plain SKIPPED (Skipping GC...) [ 2%] 163s tests/test_kubernetes.py::test_kubernetes_conda SKIPPED (Skipping GC...) [ 3%] 163s tests/test_kubernetes.py::test_kubernetes_singularity SKIPPED (Skipp...) [ 3%] 163s tests/test_kubernetes.py::test_kubernetes_conda_singularity SKIPPED [ 3%] 163s tests/test_kubernetes.py::test_issue1041 SKIPPED (Skipping GCLOUD te...) [ 4%] 163s tests/test_linting.py::test_lint[version-positive] SKIPPED (This tes...) [ 4%] 163s tests/test_linting.py::test_lint[version-negative] SKIPPED (This tes...) [ 4%] 163s tests/test_linting.py::test_lint[not_used_params-positive] SKIPPED (...) [ 5%] 163s tests/test_linting.py::test_lint[not_used_params-negative] SKIPPED (...) [ 5%] 163s tests/test_linting.py::test_lint[iofile_by_index-positive] SKIPPED (...) [ 5%] 163s tests/test_linting.py::test_lint[iofile_by_index-negative] SKIPPED (...) [ 6%] 163s tests/test_linting.py::test_lint[envvars-positive] SKIPPED (This tes...) 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[ 13%] 163s tests/test_persistence.py::TestCleanupContainers::test_one_unrequired_container_gets_removed PASSED [ 13%] 163s tests/test_schema.py::test_config PASSED [ 14%] 163s tests/test_schema.py::test_config_ref PASSED [ 14%] 163s tests/test_schema.py::test_dataframe PASSED [ 14%] 163s tests/test_slurm.py::test_slurm_mpi SKIPPED (Slurm is not setup when...) [ 15%] 163s tests/test_slurm.py::test_slurm_group_job SKIPPED (Slurm is not setu...) [ 15%] 163s tests/test_slurm.py::test_slurm_group_parallel SKIPPED (Slurm is not...) [ 15%] 163s tests/test_slurm.py::test_slurm_complex SKIPPED (Slurm is not setup ...) [ 16%] 163s tests/test_slurm.py::test_slurm_extra_arguments SKIPPED (Slurm and C...) [ 16%] 163s tests/testapi.py::test_keep_logger PASSED [ 16%] 163s tests/testapi.py::test_workflow_calling SKIPPED (This test is known ...) 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tests/tests.py::test_new_resources_can_be_defined_as_local PASSED [ 55%] 805s tests/tests.py::test_resources_can_be_overwritten_as_global PASSED [ 55%] 825s tests/tests.py::test_scopes_submitted_to_cluster PASSED [ 56%] 845s tests/tests.py::test_resources_submitted_to_cluster PASSED [ 56%] 865s tests/tests.py::test_excluded_resources_not_submitted_to_cluster PASSED [ 56%] 885s tests/tests.py::test_group_job_fail PASSED [ 57%] 885s tests/tests.py::test_validate PASSED [ 57%] 885s tests/tests.py::test_validate_fail PASSED [ 57%] 885s tests/tests.py::test_issue854 PASSED [ 58%] 915s tests/tests.py::test_issue850 PASSED [ 58%] 946s tests/tests.py::test_issue860 PASSED [ 58%] 946s tests/tests.py::test_issue894 PASSED [ 59%] 946s tests/tests.py::test_issue584 PASSED [ 59%] 946s tests/tests.py::test_issue912 PASSED [ 59%] 976s tests/tests.py::test_job_properties PASSED [ 60%] 976s tests/tests.py::test_issue916 PASSED [ 60%] 1016s tests/tests.py::test_issue930 PASSED [ 60%] 1016s 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tests/tests.py::TestParseCoresJobs::test_non_local_job[input2-output2] PASSED [ 72%] 1023s tests/tests.py::TestParseCoresJobs::test_non_local_job[input3-None] PASSED [ 72%] 1023s tests/tests.py::TestParseCoresJobs::test_non_local_job[input4-None] PASSED [ 72%] 1023s tests/tests.py::TestParseCoresJobs::test_non_local_job[input5-output5] PASSED [ 73%] 1023s tests/tests.py::TestParseCoresJobs::test_local_job[input0-output0] PASSED [ 73%] 1023s tests/tests.py::TestParseCoresJobs::test_local_job[input1-output1] PASSED [ 73%] 1023s tests/tests.py::TestParseCoresJobs::test_local_job[input2-output2] PASSED [ 74%] 1023s tests/tests.py::TestParseCoresJobs::test_local_job[input3-None] PASSED [ 74%] 1023s tests/tests.py::TestParseCoresJobs::test_local_job[input4-output4] PASSED [ 74%] 1023s tests/tests.py::TestParseCoresJobs::test_local_job[input5-output5] PASSED [ 75%] 1023s tests/tests.py::TestParseCoresJobs::test_local_job[input6-None] PASSED [ 75%] 1023s tests/tests.py::TestParseCoresJobs::test_local_job[input7-output7] PASSED [ 75%] 1023s tests/tests.py::test_linting PASSED [ 76%] 1053s tests/tests.py::test_string_resources PASSED [ 76%] 1053s tests/tests.py::test_github_issue456 PASSED [ 76%] 1053s tests/tests.py::test_scatter_gather PASSED [ 77%] 1053s tests/tests.py::test_parsing_terminal_comment_following_statement PASSED [ 77%] 1053s tests/tests.py::test_github_issue640 PASSED [ 77%] 1055s tests/tests.py::test_generate_unit_tests PASSED [ 78%] 1055s tests/tests.py::test_metadata_migration PASSED [ 78%] 1059s tests/tests.py::test_paramspace PASSED [ 78%] 1062s tests/tests.py::test_paramspace_single_wildcard PASSED [ 79%] 1081s tests/tests.py::test_github_issue806 PASSED [ 79%] 1081s tests/tests.py::test_long_shell PASSED [ 79%] 1081s tests/tests.py::test_modules_all PASSED [ 80%] 1082s tests/tests.py::test_module_nested PASSED [ 80%] 1082s tests/tests.py::test_modules_all_exclude_1 PASSED [ 80%] 1082s tests/tests.py::test_modules_all_exclude_2 PASSED [ 81%] 1082s tests/tests.py::test_modules_specific PASSED [ 81%] 1082s tests/tests.py::test_use_rule_same_module PASSED [ 81%] 1082s tests/tests.py::test_module_no_prefixing_modified_paths PASSED [ 82%] 1082s tests/tests.py::test_module_worfklow_namespacing PASSED [ 82%] 1082s tests/tests.py::test_handover PASSED [ 82%] 1082s tests/tests.py::test_source_path PASSED [ 83%] 1082s tests/tests.py::test_filesep_windows_targets SKIPPED (Windows stuff) [ 83%] 1082s tests/tests.py::test_filesep_on_windows SKIPPED (Windows stuff) [ 83%] 1082s tests/tests.py::test_set_resources PASSED [ 84%] 1083s tests/tests.py::test_github_issue1069 PASSED [ 84%] 1083s tests/tests.py::test_touch_pipeline_with_temp_dir PASSED [ 84%] 1084s tests/tests.py::test_all_temp PASSED [ 85%] 1084s tests/tests.py::test_strict_mode PASSED [ 85%] 1104s tests/tests.py::test_github_issue1158 PASSED [ 85%] 1104s tests/tests.py::test_converting_path_for_r_script PASSED [ 86%] 1125s tests/tests.py::test_checkpoint_allowed_rules PASSED [ 86%] 1125s tests/tests.py::test_modules_ruledeps_inheritance PASSED [ 86%] 1209s tests/tests.py::test_issue1331 PASSED [ 87%] 1209s tests/tests.py::test_default_target PASSED [ 87%] 1210s tests/tests.py::test_cache_multioutput PASSED [ 87%] 1212s tests/tests.py::test_github_issue1384 PASSED [ 88%] 1212s tests/tests.py::test_template_engine PASSED [ 88%] 1212s tests/tests.py::test_groupid_expand_local PASSED [ 88%] 1232s tests/tests.py::test_groupid_expand_cluster PASSED [ 89%] 1234s tests/tests.py::test_service_jobs PASSED [ 89%] 1234s tests/tests.py::test_incomplete_params PASSED [ 89%] 1235s tests/tests.py::test_github_issue261 PASSED [ 90%] 1235s tests/tests.py::test_pipe_depend PASSED [ 90%] 1235s tests/tests.py::test_pipe_depend_target_file PASSED [ 90%] 1235s tests/tests.py::test_github_issue1500 PASSED [ 91%] 1235s tests/tests.py::test_github_issue1542 PASSED [ 91%] 1235s tests/tests.py::test_github_issue1550 PASSED [ 91%] 1235s tests/tests.py::test_github_issue1498 PASSED [ 92%] 1236s tests/tests.py::test_lazy_resources PASSED [ 92%] 1236s tests/tests.py::test_cleanup_metadata_fail PASSED [ 92%] 1236s tests/tests.py::test_github_issue1389 PASSED [ 93%] 1236s tests/tests.py::test_github_issue2142 PASSED [ 93%] 1236s tests/tests.py::test_ensure_nonempty_fail PASSED [ 93%] 1236s tests/tests.py::test_ensure_success PASSED [ 94%] 1236s tests/tests.py::test_ensure_checksum_fail PASSED [ 94%] 1237s tests/tests.py::test_fstring PASSED [ 94%] 1248s tests/tests.py::test_github_issue1261 PASSED [ 95%] 1248s tests/tests.py::test_retries PASSED [ 95%] 1249s tests/tests.py::test_retries_not_overriden PASSED [ 95%] 1249s tests/tests.py::test_module_input_func PASSED [ 96%] 1249s tests/tests.py::test_github_issue1618 PASSED [ 96%] 1249s tests/tests.py::test_github_issue1818 PASSED [ 96%] 1250s tests/tests.py::test_match_by_wildcard_names PASSED [ 97%] 1250s tests/tests.py::test_github_issue929 PASSED [ 97%] 1251s tests/tests.py::test_github_issue1882 PASSED [ 97%] 1251s tests/tests.py::test_inferred_resources PASSED [ 98%] 1251s tests/tests.py::test_workflow_profile PASSED [ 98%] 1252s tests/tests.py::test_no_workflow_profile PASSED [ 98%] 1252s tests/tests.py::test_localrule PASSED [ 99%] 1252s tests/tests.py::test_module_wildcard_constraints PASSED [ 99%] 1252s tests/tests.py::test_config_yte PASSED [100%] 1252s 1252s =============================== warnings summary =============================== 1252s tests/test_schema.py: 12 warnings 1252s tests/tests.py: 6 warnings 1252s /usr/lib/python3/dist-packages/snakemake/utils.py:50: DeprecationWarning: jsonschema.RefResolver is deprecated as of v4.18.0, in favor of the https://github.com/python-jsonschema/referencing library, which provides more compliant referencing behavior as well as more flexible APIs for customization. A future release will remove RefResolver. Please file a feature request (on referencing) if you are missing an API for the kind of customization you need. 1252s from jsonschema import validators, RefResolver 1252s 1252s tests/testapi.py::test_keep_logger 1252s /usr/lib/python3/dist-packages/stopit/__init__.py:10: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 1252s import pkg_resources 1252s 1252s tests/testapi.py::test_lockexception 1252s /usr/lib/python3/dist-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but tests/testapi.py::test_lockexception returned True, which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`? 1252s warnings.warn( 1252s 1252s tests/tests.py::test_glpk_solver 1252s :891: DeprecationWarning: This process (pid=3874) is multi-threaded, use of fork() may lead to deadlocks in the child. 1252s 1252s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 1252s === 252 passed, 46 skipped, 97 deselected, 21 warnings in 1095.51s (0:18:15) === 1253s ============================= test session starts ============================== 1253s platform linux -- Python 3.13.9, pytest-8.3.5, pluggy-1.6.0 -- /usr/bin/python3 1253s cachedir: .pytest_cache 1253s rootdir: /tmp/autopkgtest.wbr0uT/autopkgtest_tmp 1253s plugins: requests_mock-1.12.1, mock-3.15.1, typeguard-4.4.2 1260s collecting ... collected 395 items / 388 deselected / 7 selected 1260s 1280s tests/tests.py::test_group_job_resources_with_pipe PASSED [ 14%] 1280s tests/tests.py::test_group_job_resources_with_pipe_with_too_much_constraint PASSED [ 28%] 1340s tests/tests.py::test_multicomp_group_jobs Timeout (0:01:00)! 1340s Thread 0x000064941f7ef100 (most recent call first): 1340s File "/usr/lib/python3.13/selectors.py", line 452 in select 1340s File "/usr/lib/python3.13/asyncio/base_events.py", line 2012 in _run_once 1340s File "/usr/lib/python3.13/asyncio/base_events.py", line 683 in run_forever 1340s File "/usr/lib/python3.13/asyncio/base_events.py", line 712 in run_until_complete 1340s File "/usr/lib/python3.13/asyncio/runners.py", line 118 in run 1340s File "/usr/lib/python3.13/asyncio/runners.py", line 195 in run 1340s File "/usr/lib/python3/dist-packages/snakemake/executors/__init__.py", line 886 in _wait_thread 1340s File "/usr/lib/python3.13/threading.py", line 994 in run 1340s File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner 1340s File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap 1340s 1340s Thread 0x000064942616f100 (most recent call first): 1340s File "/usr/lib/python3.13/selectors.py", line 452 in select 1340s File "/usr/lib/python3.13/asyncio/base_events.py", line 2012 in _run_once 1340s File "/usr/lib/python3.13/asyncio/base_events.py", line 683 in run_forever 1340s File "/usr/lib/python3.13/asyncio/base_events.py", line 712 in run_until_complete 1340s File "/usr/lib/python3.13/asyncio/runners.py", line 118 in run 1340s File "/usr/lib/python3.13/asyncio/runners.py", line 195 in run 1340s File "/usr/lib/python3/dist-packages/snakemake/executors/__init__.py", line 886 in _wait_thread 1340s File "/usr/lib/python3.13/threading.py", line 994 in run 1340s File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner 1340s File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap 1340s 1340s Thread 0x000064941ffff100 (most recent call first): 1340s File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker 1340s File "/usr/lib/python3.13/threading.py", line 994 in run 1340s File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner 1340s File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap 1340s 1340s Thread 0x0000649424d4f100 (most recent call first): 1340s File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker 1340s File "/usr/lib/python3.13/threading.py", line 994 in run 1340s File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner 1340s File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap 1340s 1340s Thread 0x000064942595f100 (most recent call first): 1340s File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker 1340s File "/usr/lib/python3.13/threading.py", line 994 in run 1340s File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner 1340s File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap 1340s 1340s Thread 0x000064942f384480 (most recent call first): 1340s File "/usr/lib/python3.13/threading.py", line 359 in wait 1340s File "/usr/lib/python3.13/threading.py", line 511 in acquire 1340s File "/usr/lib/python3/dist-packages/snakemake/scheduler.py", line 546 in schedule 1340s File "/usr/lib/python3/dist-packages/snakemake/workflow.py", line 1242 in execute 1340s File "/usr/lib/python3/dist-packages/snakemake/__init__.py", line 792 in snakemake 1340s File "/tmp/autopkgtest.wbr0uT/autopkgtest_tmp/tests/common.py", line 234 in run 1340s File "/tmp/autopkgtest.wbr0uT/autopkgtest_tmp/tests/tests.py", line 1196 in test_multicomp_group_jobs 1340s File "/usr/lib/python3/dist-packages/_pytest/python.py", line 159 in pytest_pyfunc_call 1340s File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 121 in _multicall 1340s File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec 1340s File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 512 in __call__ 1340s File "/usr/lib/python3/dist-packages/_pytest/python.py", line 1627 in runtest 1340s File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 174 in pytest_runtest_call 1340s File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 121 in _multicall 1340s File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec 1340s File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 512 in __call__ 1340s File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 242 in 1340s File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341 in from_call 1340s File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 241 in call_and_report 1340s File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 132 in runtestprotocol 1340s File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 113 in pytest_runtest_protocol 1340s File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 121 in _multicall 1340s File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec 1340s File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 512 in __call__ 1340s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 362 in pytest_runtestloop 1340s File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 121 in _multicall 1340s File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec 1340s File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 512 in __call__ 1340s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 337 in _main 1340s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 283 in wrap_session 1340s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 330 in pytest_cmdline_main 1340s File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 121 in _multicall 1340s File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec 1340s File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 512 in __call__ 1340s File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 175 in main 1340s File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 201 in console_main 1340s File "/usr/lib/python3/dist-packages/pytest/__main__.py", line 9 in 1340s File "", line 88 in _run_code 1340s File "", line 198 in _run_module_as_main 1350s PASSED [ 42%] 1352s tests/tests.py::test_pipes PASSED [ 57%] 1353s tests/tests.py::test_pipes_multiple PASSED [ 71%] 1354s tests/tests.py::test_pipes_fail PASSED [ 85%] 1365s tests/tests.py::test_pipes2 PASSED [100%] 1365s 1365s =============================== warnings summary =============================== 1365s tests/tests.py::test_group_job_resources_with_pipe 1365s /usr/lib/python3/dist-packages/stopit/__init__.py:10: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 1365s import pkg_resources 1365s 1365s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 1365s =========== 7 passed, 388 deselected, 1 warning in 112.17s (0:01:52) =========== 1366s autopkgtest [14:45:52]: test run-unit-test: -----------------------] 1367s autopkgtest [14:45:53]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 1367s run-unit-test PASS 1368s autopkgtest [14:45:53]: @@@@@@@@@@@@@@@@@@@@ summary 1368s command1 PASS 1368s run-unit-test PASS