0s autopkgtest [22:43:59]: starting date and time: 2026-02-09 22:43:59+0000 0s autopkgtest [22:43:59]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [22:43:59]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.c4s6pvab/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:lattice --apt-upgrade r-cran-hexbin --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=lattice/0.22-9-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-ppc64el-17.secgroup --name adt-resolute-ppc64el-r-cran-hexbin-20260209-224359-juju-7f2275-prod-proposed-migration-environment-20-8fb51598-a138-43b6-8e13-01dcc72f6b66 --image adt/ubuntu-resolute-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-ppc64el-r-cran-hexbin-20260209-224359-juju-7f2275-prod-proposed-migration-environment-20-8fb51598-a138-43b6-8e13-01dcc72f6b66 from image adt/ubuntu-resolute-ppc64el-server-20260209.img (UUID f7f31435-4cd1-4090-aa55-59cfefa097ca)... 117s autopkgtest [22:45:56]: testbed dpkg architecture: ppc64el 117s autopkgtest [22:45:56]: testbed apt version: 3.1.15 117s autopkgtest [22:45:56]: @@@@@@@@@@@@@@@@@@@@ test bed setup 117s autopkgtest [22:45:56]: testbed release detected to be: None 118s autopkgtest [22:45:57]: updating testbed package index (apt update) 118s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 118s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 118s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 118s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 118s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 122s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 122s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 122s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el Packages [246 kB] 122s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el Packages [1534 kB] 125s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse ppc64el Packages [19.4 kB] 126s Fetched 3774 kB in 8s (497 kB/s) 127s Reading package lists... 127s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 127s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 127s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 127s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 128s Reading package lists... 128s Reading package lists... 128s Building dependency tree... 128s Reading state information... 128s Calculating upgrade... 128s The following packages will be upgraded: 128s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 129s libip6tc2 libxtables12 wget 129s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 129s Need to get 3125 kB of archives. 129s After this operation, 78.8 kB of additional disk space will be used. 129s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el iptables ppc64el 1.8.11-2ubuntu3 [464 kB] 129s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el libip4tc2 ppc64el 1.8.11-2ubuntu3 [27.8 kB] 129s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el libip6tc2 ppc64el 1.8.11-2ubuntu3 [28.2 kB] 129s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxtables12 ppc64el 1.8.11-2ubuntu3 [41.2 kB] 129s Get:5 http://ftpmaster.internal/ubuntu resolute/main ppc64el iproute2 ppc64el 6.18.0-1ubuntu1 [1458 kB] 131s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcryptsetup12 ppc64el 2:2.8.0-1ubuntu3 [404 kB] 131s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el wget ppc64el 1.25.0-2ubuntu4 [401 kB] 131s Get:8 http://ftpmaster.internal/ubuntu resolute/main ppc64el cryptsetup-bin ppc64el 2:2.8.0-1ubuntu3 [250 kB] 131s Get:9 http://ftpmaster.internal/ubuntu resolute/main ppc64el dracut-install ppc64el 109-11ubuntu1 [51.3 kB] 132s dpkg-preconfigure: unable to re-open stdin: No such file or directory 132s Fetched 3125 kB in 3s (1136 kB/s) 132s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 122003 files and directories currently installed.) 132s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_ppc64el.deb ... 132s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 132s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_ppc64el.deb ... 132s Unpacking libip4tc2:ppc64el (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 132s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_ppc64el.deb ... 132s Unpacking libip6tc2:ppc64el (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 132s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_ppc64el.deb ... 132s Unpacking libxtables12:ppc64el (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 132s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_ppc64el.deb ... 132s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 133s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_ppc64el.deb ... 133s Unpacking libcryptsetup12:ppc64el (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 133s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_ppc64el.deb ... 133s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 133s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_ppc64el.deb ... 133s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 133s Preparing to unpack .../8-dracut-install_109-11ubuntu1_ppc64el.deb ... 133s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 133s Setting up libip4tc2:ppc64el (1.8.11-2ubuntu3) ... 133s Setting up wget (1.25.0-2ubuntu4) ... 133s Setting up libip6tc2:ppc64el (1.8.11-2ubuntu3) ... 133s Setting up libxtables12:ppc64el (1.8.11-2ubuntu3) ... 133s Setting up dracut-install (109-11ubuntu1) ... 133s Setting up libcryptsetup12:ppc64el (2:2.8.0-1ubuntu3) ... 133s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 133s Setting up iptables (1.8.11-2ubuntu3) ... 133s Setting up iproute2 (6.18.0-1ubuntu1) ... 133s Processing triggers for man-db (2.13.1-1build1) ... 135s Processing triggers for install-info (7.2-5) ... 136s Processing triggers for libc-bin (2.42-2ubuntu4) ... 136s autopkgtest [22:46:15]: upgrading testbed (apt dist-upgrade and autopurge) 136s Reading package lists... 136s Building dependency tree... 136s Reading state information... 136s Calculating upgrade... 137s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 137s Reading package lists... 137s Building dependency tree... 137s Reading state information... 137s Solving dependencies... 137s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 139s autopkgtest [22:46:18]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 20:13:51 UTC 2026 139s autopkgtest [22:46:18]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-hexbin 145s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-cran-hexbin 1.28.5-1 (dsc) [2156 B] 145s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-cran-hexbin 1.28.5-1 (tar) [1195 kB] 145s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-cran-hexbin 1.28.5-1 (diff) [3108 B] 145s gpgv: Signature made Tue Jan 28 00:21:54 2025 UTC 145s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 145s gpgv: issuer "plessy@debian.org" 145s gpgv: Can't check signature: No public key 145s dpkg-source: warning: cannot verify inline signature for ./r-cran-hexbin_1.28.5-1.dsc: no acceptable signature found 145s autopkgtest [22:46:24]: testing package r-cran-hexbin version 1.28.5-1 146s autopkgtest [22:46:25]: build not needed 148s autopkgtest [22:46:27]: test run-unit-test: preparing testbed 148s Reading package lists... 148s Building dependency tree... 148s Reading state information... 148s Solving dependencies... 148s The following NEW packages will be installed: 148s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 148s fonts-glyphicons-halflings fonts-mathjax libblas3 libc-dev-bin libc6-dev 148s libcairo2 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 libgfortran5 148s libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 148s libjpeg8 libjs-bootstrap libjs-highlight.js libjs-jquery 148s libjs-jquery-datatables libjs-mathjax liblapack3 liblerc4 libpango-1.0-0 148s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 148s libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 148s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 148s linux-libc-dev node-normalize.css r-base-core r-bioc-affy r-bioc-affyio 148s r-bioc-biobase r-bioc-biocgenerics r-bioc-limma r-bioc-preprocesscore 148s r-bioc-zlibbioc r-cran-biocmanager r-cran-evaluate r-cran-hexbin 148s r-cran-highr r-cran-knitr r-cran-lattice r-cran-statmod r-cran-xfun 148s r-cran-yaml rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev 148s 0 upgraded, 74 newly installed, 0 to remove and 0 not upgraded. 148s Need to get 68.6 MB of archives. 148s After this operation, 184 MB of additional disk space will be used. 148s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-dejavu-mono all 2.37-8build1 [502 kB] 148s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-dejavu-core all 2.37-8build1 [834 kB] 150s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el fontconfig-config ppc64el 2.17.1-3ubuntu1 [38.5 kB] 150s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el libfontconfig1 ppc64el 2.17.1-3ubuntu1 [193 kB] 150s Get:5 http://ftpmaster.internal/ubuntu resolute/main ppc64el fontconfig ppc64el 2.17.1-3ubuntu1 [182 kB] 150s Get:6 http://ftpmaster.internal/ubuntu resolute/universe ppc64el fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 150s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 153s Get:8 http://ftpmaster.internal/ubuntu resolute/main ppc64el libblas3 ppc64el 3.12.1-7ubuntu1 [291 kB] 153s Get:9 http://ftpmaster.internal/ubuntu resolute/main ppc64el libc-dev-bin ppc64el 2.42-2ubuntu4 [23.9 kB] 153s Get:10 http://ftpmaster.internal/ubuntu resolute/main ppc64el linux-libc-dev ppc64el 6.19.0-3.3 [1832 kB] 157s Get:11 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcrypt-dev ppc64el 1:4.5.1-1 [162 kB] 157s Get:12 http://ftpmaster.internal/ubuntu resolute/main ppc64el rpcsvc-proto ppc64el 1.4.3-1build1 [84.2 kB] 157s Get:13 http://ftpmaster.internal/ubuntu resolute/main ppc64el libc6-dev ppc64el 2.42-2ubuntu4 [2080 kB] 159s Get:14 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpixman-1-0 ppc64el 0.46.4-1 [347 kB] 159s Get:15 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-render0 ppc64el 1.17.0-2ubuntu1 [17.4 kB] 159s Get:16 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-shm0 ppc64el 1.17.0-2ubuntu1 [6072 B] 159s Get:17 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxrender1 ppc64el 1:0.9.12-1 [23.0 kB] 159s Get:18 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcairo2 ppc64el 1.18.4-3 [759 kB] 160s Get:19 http://ftpmaster.internal/ubuntu resolute/main ppc64el libdatrie1 ppc64el 0.2.14-1 [22.7 kB] 160s Get:20 http://ftpmaster.internal/ubuntu resolute/main ppc64el libdeflate0 ppc64el 1.23-2build1 [64.1 kB] 160s Get:21 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgfortran5 ppc64el 15.2.0-12ubuntu1 [620 kB] 161s Get:22 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgomp1 ppc64el 15.2.0-12ubuntu1 [169 kB] 161s Get:23 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgraphite2-3 ppc64el 1.3.14-11ubuntu1 [85.3 kB] 161s Get:24 http://ftpmaster.internal/ubuntu resolute/main ppc64el libharfbuzz0b ppc64el 12.3.2-1 [663 kB] 162s Get:25 http://ftpmaster.internal/ubuntu resolute/main ppc64el x11-common all 1:7.7+24ubuntu1 [22.4 kB] 162s Get:26 http://ftpmaster.internal/ubuntu resolute/main ppc64el libice6 ppc64el 2:1.1.1-1build1 [51.9 kB] 162s Get:27 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-4ubuntu3 [214 kB] 162s Get:28 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 162s Get:29 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 162s Get:30 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 162s Get:31 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 162s Get:32 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 162s Get:33 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblapack3 ppc64el 3.12.1-7ubuntu1 [2960 kB] 167s Get:34 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu2 [315 kB] 167s Get:35 http://ftpmaster.internal/ubuntu resolute/main ppc64el libthai-data all 0.1.30-1 [155 kB] 167s Get:36 http://ftpmaster.internal/ubuntu resolute/main ppc64el libthai0 ppc64el 0.1.30-1 [22.5 kB] 167s Get:37 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpango-1.0-0 ppc64el 1.57.0-1 [283 kB] 167s Get:38 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpangoft2-1.0-0 ppc64el 1.57.0-1 [61.2 kB] 167s Get:39 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpangocairo-1.0-0 ppc64el 1.57.0-1 [31.0 kB] 167s Get:40 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpaper2 ppc64el 2.2.5-0.3build1 [18.1 kB] 167s Get:41 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpaper-utils ppc64el 2.2.5-0.3build1 [15.7 kB] 167s Get:42 http://ftpmaster.internal/ubuntu resolute/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1build1 [24.7 kB] 167s Get:43 http://ftpmaster.internal/ubuntu resolute/main ppc64el libsm6 ppc64el 2:1.2.6-1build1 [18.6 kB] 167s Get:44 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtcl8.6 ppc64el 8.6.17+dfsg-1build1 [1239 kB] 169s Get:45 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu3 [37.1 kB] 169s Get:46 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebp7 ppc64el 1.5.0-0.1build1 [330 kB] 169s Get:47 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtiff6 ppc64el 4.7.0-3ubuntu3 [307 kB] 169s Get:48 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxft2 ppc64el 2.3.6-1build2 [61.6 kB] 169s Get:49 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxss1 ppc64el 1:1.2.3-1build4 [7470 B] 169s Get:50 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtk8.6 ppc64el 8.6.17-1 [968 kB] 170s Get:51 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxt6t64 ppc64el 1:1.2.1-1.3 [203 kB] 170s Get:52 http://ftpmaster.internal/ubuntu resolute/universe ppc64el node-normalize.css all 8.0.1-5.1 [10.4 kB] 170s Get:53 http://ftpmaster.internal/ubuntu resolute/main ppc64el zip ppc64el 3.0-15ubuntu3 [198 kB] 170s Get:54 http://ftpmaster.internal/ubuntu resolute/main ppc64el unzip ppc64el 6.0-29ubuntu1 [200 kB] 170s Get:55 http://ftpmaster.internal/ubuntu resolute/main ppc64el xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 170s Get:56 http://ftpmaster.internal/ubuntu resolute/universe ppc64el r-base-core ppc64el 4.5.2-1ubuntu2 [29.3 MB] 220s Get:57 http://ftpmaster.internal/ubuntu resolute/universe ppc64el r-bioc-biocgenerics all 0.52.0-2 [624 kB] 222s Get:58 http://ftpmaster.internal/ubuntu resolute/universe ppc64el r-bioc-biobase ppc64el 2.66.0-2 [2341 kB] 228s Get:59 http://ftpmaster.internal/ubuntu resolute/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg+really1.3.1-1ubuntu2 [903 kB] 230s Get:60 http://ftpmaster.internal/ubuntu resolute/universe ppc64el r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 230s Get:61 http://ftpmaster.internal/ubuntu resolute/universe ppc64el r-bioc-affyio ppc64el 1.76.0-2 [105 kB] 230s Get:62 http://ftpmaster.internal/ubuntu resolute/universe ppc64el r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 230s Get:63 http://ftpmaster.internal/ubuntu resolute/universe ppc64el r-bioc-preprocesscore ppc64el 1.68.0+ds-2 [181 kB] 230s Get:64 http://ftpmaster.internal/ubuntu resolute/universe ppc64el r-bioc-affy ppc64el 1.84.0-2 [2017 kB] 234s Get:65 http://ftpmaster.internal/ubuntu resolute/universe ppc64el r-cran-statmod ppc64el 1.5.0-1 [298 kB] 234s Get:66 http://ftpmaster.internal/ubuntu resolute/universe ppc64el r-bioc-limma ppc64el 3.62.2+dfsg-1 [1974 kB] 237s Get:67 http://ftpmaster.internal/ubuntu resolute/universe ppc64el r-cran-evaluate all 1.0.5-1 [117 kB] 237s Get:68 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el r-cran-lattice ppc64el 0.22-9-1 [1399 kB] 239s Get:69 http://ftpmaster.internal/ubuntu resolute/universe ppc64el r-cran-hexbin ppc64el 1.28.5-1 [1583 kB] 242s Get:70 http://ftpmaster.internal/ubuntu resolute/universe ppc64el r-cran-xfun ppc64el 0.55+dfsg-1 [589 kB] 243s Get:71 http://ftpmaster.internal/ubuntu resolute/universe ppc64el r-cran-highr all 0.11+dfsg-1 [38.5 kB] 243s Get:72 http://ftpmaster.internal/ubuntu resolute/universe ppc64el r-cran-yaml ppc64el 2.3.10-1 [123 kB] 243s Get:73 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 256s Get:74 http://ftpmaster.internal/ubuntu resolute/universe ppc64el r-cran-knitr all 1.51+dfsg-1 [847 kB] 257s Preconfiguring packages ... 257s Fetched 68.6 MB in 1min 49s (630 kB/s) 257s Selecting previously unselected package fonts-dejavu-mono. 257s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 122006 files and directories currently installed.) 257s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8build1_all.deb ... 257s Unpacking fonts-dejavu-mono (2.37-8build1) ... 257s Selecting previously unselected package fonts-dejavu-core. 257s Preparing to unpack .../01-fonts-dejavu-core_2.37-8build1_all.deb ... 257s Unpacking fonts-dejavu-core (2.37-8build1) ... 258s Selecting previously unselected package fontconfig-config. 258s Preparing to unpack .../02-fontconfig-config_2.17.1-3ubuntu1_ppc64el.deb ... 258s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 258s Selecting previously unselected package libfontconfig1:ppc64el. 258s Preparing to unpack .../03-libfontconfig1_2.17.1-3ubuntu1_ppc64el.deb ... 258s Unpacking libfontconfig1:ppc64el (2.17.1-3ubuntu1) ... 258s Selecting previously unselected package fontconfig. 258s Preparing to unpack .../04-fontconfig_2.17.1-3ubuntu1_ppc64el.deb ... 258s Unpacking fontconfig (2.17.1-3ubuntu1) ... 258s Selecting previously unselected package fonts-glyphicons-halflings. 258s Preparing to unpack .../05-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 258s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 258s Selecting previously unselected package fonts-mathjax. 258s Preparing to unpack .../06-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ... 258s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ... 258s Selecting previously unselected package libblas3:ppc64el. 258s Preparing to unpack .../07-libblas3_3.12.1-7ubuntu1_ppc64el.deb ... 258s Unpacking libblas3:ppc64el (3.12.1-7ubuntu1) ... 258s Selecting previously unselected package libc-dev-bin. 258s Preparing to unpack .../08-libc-dev-bin_2.42-2ubuntu4_ppc64el.deb ... 258s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 258s Selecting previously unselected package linux-libc-dev:ppc64el. 258s Preparing to unpack .../09-linux-libc-dev_6.19.0-3.3_ppc64el.deb ... 258s Unpacking linux-libc-dev:ppc64el (6.19.0-3.3) ... 258s Selecting previously unselected package libcrypt-dev:ppc64el. 258s Preparing to unpack .../10-libcrypt-dev_1%3a4.5.1-1_ppc64el.deb ... 258s Unpacking libcrypt-dev:ppc64el (1:4.5.1-1) ... 258s Selecting previously unselected package rpcsvc-proto. 258s Preparing to unpack .../11-rpcsvc-proto_1.4.3-1build1_ppc64el.deb ... 258s Unpacking rpcsvc-proto (1.4.3-1build1) ... 258s Selecting previously unselected package libc6-dev:ppc64el. 258s Preparing to unpack .../12-libc6-dev_2.42-2ubuntu4_ppc64el.deb ... 258s Unpacking libc6-dev:ppc64el (2.42-2ubuntu4) ... 258s Selecting previously unselected package libpixman-1-0:ppc64el. 258s Preparing to unpack .../13-libpixman-1-0_0.46.4-1_ppc64el.deb ... 258s Unpacking libpixman-1-0:ppc64el (0.46.4-1) ... 258s Selecting previously unselected package libxcb-render0:ppc64el. 258s Preparing to unpack .../14-libxcb-render0_1.17.0-2ubuntu1_ppc64el.deb ... 258s Unpacking libxcb-render0:ppc64el (1.17.0-2ubuntu1) ... 258s Selecting previously unselected package libxcb-shm0:ppc64el. 258s Preparing to unpack .../15-libxcb-shm0_1.17.0-2ubuntu1_ppc64el.deb ... 258s Unpacking libxcb-shm0:ppc64el (1.17.0-2ubuntu1) ... 258s Selecting previously unselected package libxrender1:ppc64el. 258s Preparing to unpack .../16-libxrender1_1%3a0.9.12-1_ppc64el.deb ... 258s Unpacking libxrender1:ppc64el (1:0.9.12-1) ... 258s Selecting previously unselected package libcairo2:ppc64el. 258s Preparing to unpack .../17-libcairo2_1.18.4-3_ppc64el.deb ... 258s Unpacking libcairo2:ppc64el (1.18.4-3) ... 258s Selecting previously unselected package libdatrie1:ppc64el. 258s Preparing to unpack .../18-libdatrie1_0.2.14-1_ppc64el.deb ... 258s Unpacking libdatrie1:ppc64el (0.2.14-1) ... 258s Selecting previously unselected package libdeflate0:ppc64el. 258s Preparing to unpack .../19-libdeflate0_1.23-2build1_ppc64el.deb ... 258s Unpacking libdeflate0:ppc64el (1.23-2build1) ... 258s Selecting previously unselected package libgfortran5:ppc64el. 258s Preparing to unpack .../20-libgfortran5_15.2.0-12ubuntu1_ppc64el.deb ... 258s Unpacking libgfortran5:ppc64el (15.2.0-12ubuntu1) ... 258s Selecting previously unselected package libgomp1:ppc64el. 258s Preparing to unpack .../21-libgomp1_15.2.0-12ubuntu1_ppc64el.deb ... 258s Unpacking libgomp1:ppc64el (15.2.0-12ubuntu1) ... 258s Selecting previously unselected package libgraphite2-3:ppc64el. 258s Preparing to unpack .../22-libgraphite2-3_1.3.14-11ubuntu1_ppc64el.deb ... 258s Unpacking libgraphite2-3:ppc64el (1.3.14-11ubuntu1) ... 258s Selecting previously unselected package libharfbuzz0b:ppc64el. 258s Preparing to unpack .../23-libharfbuzz0b_12.3.2-1_ppc64el.deb ... 258s Unpacking libharfbuzz0b:ppc64el (12.3.2-1) ... 258s Selecting previously unselected package x11-common. 258s Preparing to unpack .../24-x11-common_1%3a7.7+24ubuntu1_all.deb ... 258s Unpacking x11-common (1:7.7+24ubuntu1) ... 258s Selecting previously unselected package libice6:ppc64el. 258s Preparing to unpack .../25-libice6_2%3a1.1.1-1build1_ppc64el.deb ... 258s Unpacking libice6:ppc64el (2:1.1.1-1build1) ... 258s Selecting previously unselected package libjpeg-turbo8:ppc64el. 258s Preparing to unpack .../26-libjpeg-turbo8_2.1.5-4ubuntu3_ppc64el.deb ... 258s Unpacking libjpeg-turbo8:ppc64el (2.1.5-4ubuntu3) ... 258s Selecting previously unselected package libjpeg8:ppc64el. 258s Preparing to unpack .../27-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 258s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 258s Selecting previously unselected package libjs-bootstrap. 258s Preparing to unpack .../28-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 258s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 258s Selecting previously unselected package libjs-highlight.js. 258s Preparing to unpack .../29-libjs-highlight.js_10.7.3+dfsg-2_all.deb ... 258s Unpacking libjs-highlight.js (10.7.3+dfsg-2) ... 258s Selecting previously unselected package libjs-jquery. 258s Preparing to unpack .../30-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 258s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 258s Selecting previously unselected package libjs-jquery-datatables. 258s Preparing to unpack .../31-libjs-jquery-datatables_1.11.5+dfsg-2build1_all.deb ... 258s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2build1) ... 259s Selecting previously unselected package liblapack3:ppc64el. 259s Preparing to unpack .../32-liblapack3_3.12.1-7ubuntu1_ppc64el.deb ... 259s Unpacking liblapack3:ppc64el (3.12.1-7ubuntu1) ... 259s Selecting previously unselected package liblerc4:ppc64el. 259s Preparing to unpack .../33-liblerc4_4.0.0+ds-5ubuntu2_ppc64el.deb ... 259s Unpacking liblerc4:ppc64el (4.0.0+ds-5ubuntu2) ... 259s Selecting previously unselected package libthai-data. 259s Preparing to unpack .../34-libthai-data_0.1.30-1_all.deb ... 259s Unpacking libthai-data (0.1.30-1) ... 259s Selecting previously unselected package libthai0:ppc64el. 259s Preparing to unpack .../35-libthai0_0.1.30-1_ppc64el.deb ... 259s Unpacking libthai0:ppc64el (0.1.30-1) ... 259s Selecting previously unselected package libpango-1.0-0:ppc64el. 259s Preparing to unpack .../36-libpango-1.0-0_1.57.0-1_ppc64el.deb ... 259s Unpacking libpango-1.0-0:ppc64el (1.57.0-1) ... 259s Selecting previously unselected package libpangoft2-1.0-0:ppc64el. 259s Preparing to unpack .../37-libpangoft2-1.0-0_1.57.0-1_ppc64el.deb ... 259s Unpacking libpangoft2-1.0-0:ppc64el (1.57.0-1) ... 259s Selecting previously unselected package libpangocairo-1.0-0:ppc64el. 259s Preparing to unpack .../38-libpangocairo-1.0-0_1.57.0-1_ppc64el.deb ... 259s Unpacking libpangocairo-1.0-0:ppc64el (1.57.0-1) ... 259s Selecting previously unselected package libpaper2:ppc64el. 259s Preparing to unpack .../39-libpaper2_2.2.5-0.3build1_ppc64el.deb ... 259s Unpacking libpaper2:ppc64el (2.2.5-0.3build1) ... 259s Selecting previously unselected package libpaper-utils. 259s Preparing to unpack .../40-libpaper-utils_2.2.5-0.3build1_ppc64el.deb ... 259s Unpacking libpaper-utils (2.2.5-0.3build1) ... 259s Selecting previously unselected package libsharpyuv0:ppc64el. 259s Preparing to unpack .../41-libsharpyuv0_1.5.0-0.1build1_ppc64el.deb ... 259s Unpacking libsharpyuv0:ppc64el (1.5.0-0.1build1) ... 259s Selecting previously unselected package libsm6:ppc64el. 259s Preparing to unpack .../42-libsm6_2%3a1.2.6-1build1_ppc64el.deb ... 259s Unpacking libsm6:ppc64el (2:1.2.6-1build1) ... 259s Selecting previously unselected package libtcl8.6:ppc64el. 259s Preparing to unpack .../43-libtcl8.6_8.6.17+dfsg-1build1_ppc64el.deb ... 259s Unpacking libtcl8.6:ppc64el (8.6.17+dfsg-1build1) ... 259s Selecting previously unselected package libjbig0:ppc64el. 259s Preparing to unpack .../44-libjbig0_2.1-6.1ubuntu3_ppc64el.deb ... 259s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu3) ... 259s Selecting previously unselected package libwebp7:ppc64el. 259s Preparing to unpack .../45-libwebp7_1.5.0-0.1build1_ppc64el.deb ... 259s Unpacking libwebp7:ppc64el (1.5.0-0.1build1) ... 259s Selecting previously unselected package libtiff6:ppc64el. 259s Preparing to unpack .../46-libtiff6_4.7.0-3ubuntu3_ppc64el.deb ... 259s Unpacking libtiff6:ppc64el (4.7.0-3ubuntu3) ... 259s Selecting previously unselected package libxft2:ppc64el. 259s Preparing to unpack .../47-libxft2_2.3.6-1build2_ppc64el.deb ... 259s Unpacking libxft2:ppc64el (2.3.6-1build2) ... 259s Selecting previously unselected package libxss1:ppc64el. 259s Preparing to unpack .../48-libxss1_1%3a1.2.3-1build4_ppc64el.deb ... 259s Unpacking libxss1:ppc64el (1:1.2.3-1build4) ... 259s Selecting previously unselected package libtk8.6:ppc64el. 259s Preparing to unpack .../49-libtk8.6_8.6.17-1_ppc64el.deb ... 259s Unpacking libtk8.6:ppc64el (8.6.17-1) ... 259s Selecting previously unselected package libxt6t64:ppc64el. 259s Preparing to unpack .../50-libxt6t64_1%3a1.2.1-1.3_ppc64el.deb ... 259s Unpacking libxt6t64:ppc64el (1:1.2.1-1.3) ... 259s Selecting previously unselected package node-normalize.css. 259s Preparing to unpack .../51-node-normalize.css_8.0.1-5.1_all.deb ... 259s Unpacking node-normalize.css (8.0.1-5.1) ... 259s Selecting previously unselected package zip. 259s Preparing to unpack .../52-zip_3.0-15ubuntu3_ppc64el.deb ... 259s Unpacking zip (3.0-15ubuntu3) ... 259s Selecting previously unselected package unzip. 259s Preparing to unpack .../53-unzip_6.0-29ubuntu1_ppc64el.deb ... 259s Unpacking unzip (6.0-29ubuntu1) ... 259s Selecting previously unselected package xdg-utils. 259s Preparing to unpack .../54-xdg-utils_1.2.1-2ubuntu2_all.deb ... 259s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 259s Selecting previously unselected package r-base-core. 259s Preparing to unpack .../55-r-base-core_4.5.2-1ubuntu2_ppc64el.deb ... 259s Unpacking r-base-core (4.5.2-1ubuntu2) ... 259s Selecting previously unselected package r-bioc-biocgenerics. 259s Preparing to unpack .../56-r-bioc-biocgenerics_0.52.0-2_all.deb ... 259s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 259s Selecting previously unselected package r-bioc-biobase. 259s Preparing to unpack .../57-r-bioc-biobase_2.66.0-2_ppc64el.deb ... 259s Unpacking r-bioc-biobase (2.66.0-2) ... 259s Selecting previously unselected package zlib1g-dev:ppc64el. 259s Preparing to unpack .../58-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_ppc64el.deb ... 259s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 259s Selecting previously unselected package r-bioc-zlibbioc. 259s Preparing to unpack .../59-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 259s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 259s Selecting previously unselected package r-bioc-affyio. 259s Preparing to unpack .../60-r-bioc-affyio_1.76.0-2_ppc64el.deb ... 259s Unpacking r-bioc-affyio (1.76.0-2) ... 259s Selecting previously unselected package r-cran-biocmanager. 260s Preparing to unpack .../61-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 260s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 260s Selecting previously unselected package r-bioc-preprocesscore. 260s Preparing to unpack .../62-r-bioc-preprocesscore_1.68.0+ds-2_ppc64el.deb ... 260s Unpacking r-bioc-preprocesscore (1.68.0+ds-2) ... 260s Selecting previously unselected package r-bioc-affy. 260s Preparing to unpack .../63-r-bioc-affy_1.84.0-2_ppc64el.deb ... 260s Unpacking r-bioc-affy (1.84.0-2) ... 260s Selecting previously unselected package r-cran-statmod. 260s Preparing to unpack .../64-r-cran-statmod_1.5.0-1_ppc64el.deb ... 260s Unpacking r-cran-statmod (1.5.0-1) ... 260s Selecting previously unselected package r-bioc-limma. 260s Preparing to unpack .../65-r-bioc-limma_3.62.2+dfsg-1_ppc64el.deb ... 260s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 260s Selecting previously unselected package r-cran-evaluate. 260s Preparing to unpack .../66-r-cran-evaluate_1.0.5-1_all.deb ... 260s Unpacking r-cran-evaluate (1.0.5-1) ... 260s Selecting previously unselected package r-cran-lattice. 260s Preparing to unpack .../67-r-cran-lattice_0.22-9-1_ppc64el.deb ... 260s Unpacking r-cran-lattice (0.22-9-1) ... 260s Selecting previously unselected package r-cran-hexbin. 260s Preparing to unpack .../68-r-cran-hexbin_1.28.5-1_ppc64el.deb ... 260s Unpacking r-cran-hexbin (1.28.5-1) ... 260s Selecting previously unselected package r-cran-xfun. 260s Preparing to unpack .../69-r-cran-xfun_0.55+dfsg-1_ppc64el.deb ... 260s Unpacking r-cran-xfun (0.55+dfsg-1) ... 260s Selecting previously unselected package r-cran-highr. 260s Preparing to unpack .../70-r-cran-highr_0.11+dfsg-1_all.deb ... 260s Unpacking r-cran-highr (0.11+dfsg-1) ... 260s Selecting previously unselected package r-cran-yaml. 260s Preparing to unpack .../71-r-cran-yaml_2.3.10-1_ppc64el.deb ... 260s Unpacking r-cran-yaml (2.3.10-1) ... 260s Selecting previously unselected package libjs-mathjax. 260s Preparing to unpack .../72-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ... 260s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ... 260s Selecting previously unselected package r-cran-knitr. 260s Preparing to unpack .../73-r-cran-knitr_1.51+dfsg-1_all.deb ... 260s Unpacking r-cran-knitr (1.51+dfsg-1) ... 260s Setting up libgraphite2-3:ppc64el (1.3.14-11ubuntu1) ... 260s Setting up libpixman-1-0:ppc64el (0.46.4-1) ... 260s Setting up libsharpyuv0:ppc64el (1.5.0-0.1build1) ... 260s Setting up fonts-mathjax (2.7.9+dfsg-1build1) ... 260s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu2) ... 260s Setting up libjs-mathjax (2.7.9+dfsg-1build1) ... 260s Setting up libxrender1:ppc64el (1:0.9.12-1) ... 260s Setting up libdatrie1:ppc64el (0.2.14-1) ... 260s Setting up libxcb-render0:ppc64el (1.17.0-2ubuntu1) ... 260s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 260s Setting up unzip (6.0-29ubuntu1) ... 260s Setting up x11-common (1:7.7+24ubuntu1) ... 261s Setting up libdeflate0:ppc64el (1.23-2build1) ... 261s Setting up linux-libc-dev:ppc64el (6.19.0-3.3) ... 261s Setting up libxcb-shm0:ppc64el (1.17.0-2ubuntu1) ... 261s Setting up libgomp1:ppc64el (15.2.0-12ubuntu1) ... 261s Setting up libjbig0:ppc64el (2.1-6.1ubuntu3) ... 261s Setting up zip (3.0-15ubuntu3) ... 261s Setting up libblas3:ppc64el (3.12.1-7ubuntu1) ... 261s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 261s Setting up rpcsvc-proto (1.4.3-1build1) ... 261s Setting up fonts-dejavu-mono (2.37-8build1) ... 261s Setting up libtcl8.6:ppc64el (8.6.17+dfsg-1build1) ... 261s Setting up fonts-dejavu-core (2.37-8build1) ... 261s Setting up libjpeg-turbo8:ppc64el (2.1.5-4ubuntu3) ... 261s Setting up libgfortran5:ppc64el (15.2.0-12ubuntu1) ... 261s Setting up libwebp7:ppc64el (1.5.0-0.1build1) ... 261s Setting up libjs-highlight.js (10.7.3+dfsg-2) ... 261s Setting up libcrypt-dev:ppc64el (1:4.5.1-1) ... 261s Setting up libharfbuzz0b:ppc64el (12.3.2-1) ... 261s Setting up libthai-data (0.1.30-1) ... 261s Setting up libxss1:ppc64el (1:1.2.3-1build4) ... 261s Setting up libpaper2:ppc64el (2.2.5-0.3build1) ... 261s Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 261s Setting up libc-dev-bin (2.42-2ubuntu4) ... 261s Setting up node-normalize.css (8.0.1-5.1) ... 261s Setting up xdg-utils (1.2.1-2ubuntu2) ... 261s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 261s Setting up libjs-bootstrap (3.4.1+dfsg-6) ... 261s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 261s Setting up libice6:ppc64el (2:1.1.1-1build1) ... 261s Setting up liblapack3:ppc64el (3.12.1-7ubuntu1) ... 261s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 261s Setting up fontconfig-config (2.17.1-3ubuntu1) ... 261s Setting up libpaper-utils (2.2.5-0.3build1) ... 261s Setting up libjs-jquery-datatables (1.11.5+dfsg-2build1) ... 261s Setting up libthai0:ppc64el (0.1.30-1) ... 261s Setting up libtiff6:ppc64el (4.7.0-3ubuntu3) ... 261s Setting up libc6-dev:ppc64el (2.42-2ubuntu4) ... 261s Setting up libfontconfig1:ppc64el (2.17.1-3ubuntu1) ... 261s Setting up libsm6:ppc64el (2:1.2.6-1build1) ... 261s Setting up fontconfig (2.17.1-3ubuntu1) ... 263s Regenerating fonts cache... done. 263s Setting up libxft2:ppc64el (2.3.6-1build2) ... 263s Setting up libtk8.6:ppc64el (8.6.17-1) ... 263s Setting up libpango-1.0-0:ppc64el (1.57.0-1) ... 263s Setting up libcairo2:ppc64el (1.18.4-3) ... 263s Setting up libxt6t64:ppc64el (1:1.2.1-1.3) ... 263s Setting up zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 263s Setting up libpangoft2-1.0-0:ppc64el (1.57.0-1) ... 263s Setting up libpangocairo-1.0-0:ppc64el (1.57.0-1) ... 263s Setting up r-base-core (4.5.2-1ubuntu2) ... 263s Creating config file /etc/R/Renviron with new version 263s Setting up r-cran-lattice (0.22-9-1) ... 263s Setting up r-cran-hexbin (1.28.5-1) ... 263s Setting up r-cran-statmod (1.5.0-1) ... 263s Setting up r-bioc-biocgenerics (0.52.0-2) ... 263s Setting up r-cran-xfun (0.55+dfsg-1) ... 263s Setting up r-cran-yaml (2.3.10-1) ... 263s Setting up r-cran-evaluate (1.0.5-1) ... 263s Setting up r-cran-highr (0.11+dfsg-1) ... 263s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 263s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 263s Setting up r-bioc-biobase (2.66.0-2) ... 263s Setting up r-bioc-limma (3.62.2+dfsg-1) ... 263s Setting up r-cran-knitr (1.51+dfsg-1) ... 263s Setting up r-bioc-preprocesscore (1.68.0+ds-2) ... 263s Setting up r-bioc-affyio (1.76.0-2) ... 263s Setting up r-bioc-affy (1.84.0-2) ... 263s Processing triggers for libc-bin (2.42-2ubuntu4) ... 263s Processing triggers for man-db (2.13.1-1build1) ... 264s Processing triggers for install-info (7.2-5) ... 265s autopkgtest [22:48:24]: test run-unit-test: [----------------------- 265s BEGIN TEST hdiffplot.R 265s 265s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 265s Copyright (C) 2025 The R Foundation for Statistical Computing 265s Platform: powerpc64le-unknown-linux-gnu 265s 265s R is free software and comes with ABSOLUTELY NO WARRANTY. 265s You are welcome to redistribute it under certain conditions. 265s Type 'license()' or 'licence()' for distribution details. 265s 265s R is a collaborative project with many contributors. 265s Type 'contributors()' for more information and 265s 'citation()' on how to cite R or R packages in publications. 265s 265s Type 'demo()' for some demos, 'help()' for on-line help, or 265s 'help.start()' for an HTML browser interface to help. 265s Type 'q()' to quit R. 265s 265s > library(hexbin) 266s > 266s > if(R.version$major != "1" || as.numeric(R.version$minor) >= 7) 266s + RNGversion("1.6") 266s Warning messages: 266s 1: In RNGkind("Marsaglia-Multicarry", "Buggy Kinderman-Ramage", "Rounding") : 266s buggy version of Kinderman-Ramage generator used 266s 2: In RNGkind("Marsaglia-Multicarry", "Buggy Kinderman-Ramage", "Rounding") : 266s non-uniform 'Rounding' sampler used 266s 3: In RNGkind("Marsaglia-Multicarry", "Buggy Kinderman-Ramage", "Rounding") : 266s RNGkind: Marsaglia-Multicarry has poor statistical properties 266s > set.seed(213) 266s > x1 <- rnorm(10000) 266s > y1 <- rnorm(10000) 266s > 266s > x2 <- rnorm(10000,mean = .3) 266s > y2 <- rnorm(10000,mean = .3) 266s > 266s > rx <- range(x1,x2) 266s > ry <- range(y1,y2) 266s > 266s > str(bin1 <- hexbin(x1,y1, xbnds = rx, ybnds = ry)) 266s Formal class 'hexbin' [package "hexbin"] with 16 slots 266s ..@ cell : int [1:535] 16 20 48 70 74 75 76 80 99 101 ... 266s ..@ count : int [1:535] 1 1 1 1 1 1 1 1 1 1 ... 266s ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ... 266s ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ... 266s ..@ xbins : num 30 266s ..@ shape : num 1 266s ..@ xbnds : num [1:2] -3.8 4.3 266s ..@ ybnds : num [1:2] -3.71 4.17 266s ..@ dimen : num [1:2] 36 31 266s ..@ n : int 10000 266s ..@ ncells: int 535 266s ..@ call : language hexbin(x = x1, y = y1, xbnds = rx, ybnds = ry) 266s ..@ xlab : chr "x1" 266s ..@ ylab : chr "y1" 266s ..@ cID : NULL 266s ..@ cAtt : int(0) 266s > str(bin2 <- hexbin(x2,y2, xbnds = rx, ybnds = ry)) 266s Formal class 'hexbin' [package "hexbin"] with 16 slots 266s ..@ cell : int [1:545] 41 51 75 76 104 107 110 114 136 138 ... 266s ..@ count : int [1:545] 1 1 1 1 1 2 1 1 2 1 ... 266s ..@ xcm : num [1:545] -1.141 1.445 -0.493 -0.324 -0.995 ... 266s ..@ ycm : num [1:545] -3.42 -3.45 -3.24 -3.35 -2.9 ... 266s ..@ xbins : num 30 266s ..@ shape : num 1 266s ..@ xbnds : num [1:2] -3.8 4.3 266s ..@ ybnds : num [1:2] -3.71 4.17 266s ..@ dimen : num [1:2] 36 31 266s ..@ n : int 10000 266s ..@ ncells: int 545 266s ..@ call : language hexbin(x = x2, y = y2, xbnds = rx, ybnds = ry) 266s ..@ xlab : chr "x2" 266s ..@ ylab : chr "y2" 266s ..@ cID : NULL 266s ..@ cAtt : int(0) 266s > 266s > str(erode(bin1)) 266s Formal class 'erodebin' [package "hexbin"] with 19 slots 266s ..@ eroded: logi [1:535] FALSE FALSE FALSE FALSE FALSE FALSE ... 266s ..@ cdfcut: num 0.5 266s ..@ erode : int [1:71] 12 35 34 57 52 4 30 101 138 150 ... 266s ..@ cell : int [1:535] 16 20 48 70 74 75 76 80 99 101 ... 266s ..@ count : int [1:535] 1 1 1 1 1 1 1 1 1 1 ... 266s ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ... 266s ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ... 266s ..@ xbins : num 30 266s ..@ shape : num 1 266s ..@ xbnds : num [1:2] -3.8 4.3 266s ..@ ybnds : num [1:2] -3.71 4.17 266s ..@ dimen : num [1:2] 36 31 266s ..@ n : int 10000 266s ..@ ncells: int 535 266s ..@ call : language hexbin(x = x1, y = y1, xbnds = rx, ybnds = ry) 266s ..@ xlab : chr "x1" 266s ..@ ylab : chr "y1" 266s ..@ cID : NULL 266s ..@ cAtt : int(0) 266s > 266s > str(smbin1 <- smooth.hexbin(bin1)) 266s Formal class 'smoothbin' [package "hexbin"] with 17 slots 266s ..@ wts : num [1:3] 48 4 1 266s ..@ cell : int [1:906] 17 18 19 21 22 23 51 52 53 54 ... 266s ..@ count : int [1:906] 1 1 1 1 1 1 1 4 5 2 ... 266s ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ... 266s ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ... 266s ..@ xbins : num 34 266s ..@ shape : num 1 266s ..@ xbnds : num [1:2] -4.34 4.84 266s ..@ ybnds : num [1:2] -4.23 4.7 266s ..@ dimen : num [1:2] 40 35 266s ..@ n : int 10000 266s ..@ ncells: int 535 266s ..@ call : language hexbin(x = x1, y = y1, xbnds = rx, ybnds = ry) 266s ..@ xlab : chr "x1" 266s ..@ ylab : chr "y1" 266s ..@ cID : NULL 266s ..@ cAtt : int(0) 266s > (smbin2 <- smooth.hexbin(bin2)) 266s 'hexbin' object from call: hexbin(x = x2, y = y2, xbnds = rx, ybnds = ry) 266s n = 10000 points in nc = 545 hexagon cells in grid dimensions 40 by 35 266s > 266s > str(erodebin1 <- erode.hexbin(smbin1)) 266s Formal class 'erodebin' [package "hexbin"] with 19 slots 266s ..@ eroded: logi [1:906] FALSE FALSE FALSE FALSE FALSE FALSE ... 266s ..@ cdfcut: num 0.5 266s ..@ erode : int [1:73] 11 35 95 100 117 88 6 39 167 232 ... 266s ..@ cell : int [1:906] 17 18 19 21 22 23 51 52 53 54 ... 266s ..@ count : int [1:906] 1 1 1 1 1 1 1 4 5 2 ... 266s ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ... 266s ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ... 266s ..@ xbins : num 34 266s ..@ shape : num 1 266s ..@ xbnds : num [1:2] -4.34 4.84 266s ..@ ybnds : num [1:2] -4.23 4.7 266s ..@ dimen : num [1:2] 40 35 266s ..@ n : int 10000 266s ..@ ncells: int 535 266s ..@ call : language hexbin(x = x1, y = y1, xbnds = rx, ybnds = ry) 266s ..@ xlab : chr "x1" 266s ..@ ylab : chr "y1" 266s ..@ cID : NULL 266s ..@ cAtt : int(0) 266s > (erodebin2 <- erode.hexbin(smbin2)) 266s 'hexbin' object from call: hexbin(x = x2, y = y2, xbnds = rx, ybnds = ry) 266s n = 10000 points in nc = 545 hexagon cells in grid dimensions 40 by 35 266s > 266s > if(FALSE)## does not work -- what funny stuff is hdiffplot() doing??? 266s + par(mfrow = c(2,1)) 266s > 266s > if(exists("hdiffplot", mode="function")) { ## not yet in new hexbin 266s + hdiffplot(bin1,bin2, main = "Original N(0,*) Random bins") 266s + 266s + hdiffplot(smbin1,smbin2, main = "smooth.hexbin() smoothed bins") 266s + 266s + plot.new() 266s + hdiffplot(erodebin1,erodebin2, main = "erode.hexbin()d smoothed bins") 266s + }# not yet 266s > 266s BEGIN TEST hray.R 266s 266s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 266s Copyright (C) 2025 The R Foundation for Statistical Computing 266s Platform: powerpc64le-unknown-linux-gnu 266s 266s R is free software and comes with ABSOLUTELY NO WARRANTY. 266s You are welcome to redistribute it under certain conditions. 266s Type 'license()' or 'licence()' for distribution details. 266s 266s R is a collaborative project with many contributors. 266s Type 'contributors()' for more information and 266s 'citation()' on how to cite R or R packages in publications. 266s 266s Type 'demo()' for some demos, 'help()' for on-line help, or 266s 'help.start()' for an HTML browser interface to help. 266s Type 'q()' to quit R. 266s 266s > library(hexbin) 266s > 266s > set.seed(572) 266s > 266s > x <- rnorm(100) 266s > y <- rnorm(100) 266s > val <- rnorm(100) 266s > inc <- abs(rnorm(100,sd = .3)) 266s > loB <- val-inc 266s > hiB <- val+inc 266s > 266s > if(exists("hray", mode="function")) { # 'real soon now' 266s + 266s + ## no confidence bounds 266s + plot(x,y,type = 'n') 266s + hray(x,y,val) 266s + 266s + ## confidence bounds 266s + plot(x,y,type = 'n') 266s + hray(x,y,val, lo = loB, hi = hiB) 266s + 266s + ## clockwise orientation 266s + plot(x,y,type = 'n') 266s + hray(x,y,val, loB, hiB, clockwise = TRUE) 266s + 266s + ## no tics and small filled dots 266s + plot(x,y,type = 'n') 266s + hray(x,y,val, loB, hiB, ticlength = FALSE, 266s + dotside = 20, dotlength = .025, dotden = -1) 266s + 266s + } 266s > 266s BEGIN TEST large.R 266s 266s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 266s Copyright (C) 2025 The R Foundation for Statistical Computing 266s Platform: powerpc64le-unknown-linux-gnu 266s 266s R is free software and comes with ABSOLUTELY NO WARRANTY. 266s You are welcome to redistribute it under certain conditions. 266s Type 'license()' or 'licence()' for distribution details. 266s 266s R is a collaborative project with many contributors. 266s Type 'contributors()' for more information and 266s 'citation()' on how to cite R or R packages in publications. 266s 266s Type 'demo()' for some demos, 'help()' for on-line help, or 266s 'help.start()' for an HTML browser interface to help. 266s Type 'q()' to quit R. 266s 266s > library(hexbin) 266s > 266s > if(FALSE) { ## the following is still quite a bit from working/useful : 266s + 266s + ## what should that do? set a palette? 266s + rgb <- matrix(c( 266s + 15,15,15, 266s + 266s + 0, 0, 0, 266s + 1, 9,15, 266s + 9,15, 9, 266s + 15, 9, 9, 266s + 266s + 0, 0, 0, 266s + 0, 0, 0, 266s + 0, 0, 0, 266s + 0, 0, 0, 266s + 0, 0, 0, 266s + 0, 0, 0, 266s + 266s + 9, 9, 9, 266s + 0, 2, 7, 266s + 0, 7, 1, 266s + 8, 1, 1, 266s + 266s + 15, 2, 2, 266s + 11, 1, 1, 266s + 8, 1, 1, 266s + 5, 1, 1, 266s + 5, 1, 1, 266s + 15,15,15), ncol = 3, byrow = TRUE) 266s + 266s + ##ps.options(rasters=600,color=rgb/15,background=2) 266s + ##ps.options(color=rgb/15,background=2) 266s + postscript("large.ps",width = 10,height = 7.5) 266s + 266s + plot.hexbin(ans.25mil, style = "nest", lcex = .9) 266s + 266s + }## FALSE, i.e. nothing done 266s > 266s BEGIN TEST viewp-ex.R 266s 266s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 266s Copyright (C) 2025 The R Foundation for Statistical Computing 266s Platform: powerpc64le-unknown-linux-gnu 266s 266s R is free software and comes with ABSOLUTELY NO WARRANTY. 266s You are welcome to redistribute it under certain conditions. 266s Type 'license()' or 'licence()' for distribution details. 266s 266s R is a collaborative project with many contributors. 266s Type 'contributors()' for more information and 266s 'citation()' on how to cite R or R packages in publications. 266s 266s Type 'demo()' for some demos, 'help()' for on-line help, or 266s 'help.start()' for an HTML browser interface to help. 266s Type 'q()' to quit R. 266s 266s > library(hexbin) 266s > 266s > ## a variation on Nicholas' post to bioconductor & example(hexViewport) 266s > set.seed(545) 266s > x <- rnorm(2^15) 266s > y <- 3*x - .2*x^2 + rnorm(2^15) 266s > hbin <- hexbin(x,y) 267s > 267s > ## 267s > hp <- hexViewport(hbin, newpage = TRUE) 267s > pushHexport(hp) 267s > library("grid") 267s > grid.rect() 267s > grid.xaxis() 267s > grid.yaxis() 267s > grid.hexagons(hbin, style = "centroid") 267s > hloess <- loess(y ~ x, data = hcell2xy(hbin), weights = hbin @ count) 267s > xx <- seq(hbin@xbnds[1], hbin@xbnds[2], length = 500) 267s > grid.lines(xx, predict(hloess, xx), 267s + gp = gpar(col = 'red', lwd = 2), default.units = "native") 267s > popViewport() 267s > 267s autopkgtest [22:48:26]: test run-unit-test: -----------------------] 267s run-unit-test PASS 267s autopkgtest [22:48:26]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 268s autopkgtest [22:48:27]: test pkg-r-autopkgtest: preparing testbed 268s Reading package lists... 268s Building dependency tree... 268s Reading state information... 268s Solving dependencies... 268s The following NEW packages will be installed: 268s build-essential cpp cpp-15 cpp-15-powerpc64le-linux-gnu 268s cpp-powerpc64le-linux-gnu dctrl-tools g++ g++-15 268s g++-15-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-15 268s gcc-15-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gfortran gfortran-15 268s gfortran-15-powerpc64le-linux-gnu gfortran-powerpc64le-linux-gnu 268s icu-devtools libasan8 libblas-dev libbz2-dev libcc1-0 libdeflate-dev 268s libgcc-15-dev libgfortran-15-dev libicu-dev libisl23 libitm1 libjpeg-dev 268s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 268s libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 268s libpkgconf3 libpng-dev libquadmath0 libreadline-dev libstdc++-15-dev 268s libtirpc-dev libtsan2 libubsan1 libzstd-dev pkg-r-autopkgtest pkgconf 268s pkgconf-bin r-base-dev 268s 0 upgraded, 54 newly installed, 0 to remove and 0 not upgraded. 268s Need to get 98.7 MB of archives. 268s After this operation, 366 MB of additional disk space will be used. 268s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el libisl23 ppc64el 0.27-1build1 [893 kB] 270s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el libmpc3 ppc64el 1.3.1-2 [62.5 kB] 270s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el cpp-15-powerpc64le-linux-gnu ppc64el 15.2.0-12ubuntu1 [11.4 MB] 290s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el cpp-15 ppc64el 15.2.0-12ubuntu1 [1038 B] 290s Get:5 http://ftpmaster.internal/ubuntu resolute/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:15.2.0-4ubuntu1 [5746 B] 290s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el cpp ppc64el 4:15.2.0-4ubuntu1 [22.4 kB] 290s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcc1-0 ppc64el 15.2.0-12ubuntu1 [49.0 kB] 290s Get:8 http://ftpmaster.internal/ubuntu resolute/main ppc64el libitm1 ppc64el 15.2.0-12ubuntu1 [32.2 kB] 290s Get:9 http://ftpmaster.internal/ubuntu resolute/main ppc64el libasan8 ppc64el 15.2.0-12ubuntu1 [3006 kB] 297s Get:10 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblsan0 ppc64el 15.2.0-12ubuntu1 [1374 kB] 301s Get:11 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtsan2 ppc64el 15.2.0-12ubuntu1 [2729 kB] 311s Get:12 http://ftpmaster.internal/ubuntu resolute/main ppc64el libubsan1 ppc64el 15.2.0-12ubuntu1 [1231 kB] 315s Get:13 http://ftpmaster.internal/ubuntu resolute/main ppc64el libquadmath0 ppc64el 15.2.0-12ubuntu1 [160 kB] 315s Get:14 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgcc-15-dev ppc64el 15.2.0-12ubuntu1 [1670 kB] 319s Get:15 http://ftpmaster.internal/ubuntu resolute/main ppc64el gcc-15-powerpc64le-linux-gnu ppc64el 15.2.0-12ubuntu1 [22.4 MB] 375s Get:16 http://ftpmaster.internal/ubuntu resolute/main ppc64el gcc-15 ppc64el 15.2.0-12ubuntu1 [530 kB] 376s Get:17 http://ftpmaster.internal/ubuntu resolute/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:15.2.0-4ubuntu1 [1220 B] 376s Get:18 http://ftpmaster.internal/ubuntu resolute/main ppc64el gcc ppc64el 4:15.2.0-4ubuntu1 [5032 B] 376s Get:19 http://ftpmaster.internal/ubuntu resolute/main ppc64el libstdc++-15-dev ppc64el 15.2.0-12ubuntu1 [2747 kB] 380s Get:20 http://ftpmaster.internal/ubuntu resolute/main ppc64el g++-15-powerpc64le-linux-gnu ppc64el 15.2.0-12ubuntu1 [13.0 MB] 402s Get:21 http://ftpmaster.internal/ubuntu resolute/main ppc64el g++-15 ppc64el 15.2.0-12ubuntu1 [25.3 kB] 402s Get:22 http://ftpmaster.internal/ubuntu resolute/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:15.2.0-4ubuntu1 [970 B] 402s Get:23 http://ftpmaster.internal/ubuntu resolute/main ppc64el g++ ppc64el 4:15.2.0-4ubuntu1 [1092 B] 402s Get:24 http://ftpmaster.internal/ubuntu resolute/main ppc64el build-essential ppc64el 12.12ubuntu2 [5256 B] 402s Get:25 http://ftpmaster.internal/ubuntu resolute/main ppc64el dctrl-tools ppc64el 2.24-3build4 [108 kB] 403s Get:26 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgfortran-15-dev ppc64el 15.2.0-12ubuntu1 [651 kB] 404s Get:27 http://ftpmaster.internal/ubuntu resolute/main ppc64el gfortran-15-powerpc64le-linux-gnu ppc64el 15.2.0-12ubuntu1 [12.3 MB] 426s Get:28 http://ftpmaster.internal/ubuntu resolute/main ppc64el gfortran-15 ppc64el 15.2.0-12ubuntu1 [18.1 kB] 426s Get:29 http://ftpmaster.internal/ubuntu resolute/main ppc64el gfortran-powerpc64le-linux-gnu ppc64el 4:15.2.0-4ubuntu1 [1020 B] 426s Get:30 http://ftpmaster.internal/ubuntu resolute/main ppc64el gfortran ppc64el 4:15.2.0-4ubuntu1 [1166 B] 426s Get:31 http://ftpmaster.internal/ubuntu resolute/main ppc64el icu-devtools ppc64el 78.2-1ubuntu1 [246 kB] 426s Get:32 http://ftpmaster.internal/ubuntu resolute/main ppc64el libblas-dev ppc64el 3.12.1-7ubuntu1 [306 kB] 426s Get:33 http://ftpmaster.internal/ubuntu resolute/main ppc64el libbz2-dev ppc64el 1.0.8-6build2 [50.0 kB] 426s Get:34 http://ftpmaster.internal/ubuntu resolute/main ppc64el libdeflate-dev ppc64el 1.23-2build1 [71.8 kB] 426s Get:35 http://ftpmaster.internal/ubuntu resolute/main ppc64el libicu-dev ppc64el 78.2-1ubuntu1 [13.3 MB] 451s Get:36 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg-turbo8-dev ppc64el 2.1.5-4ubuntu3 [358 kB] 451s Get:37 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg8-dev ppc64el 8c-2ubuntu11 [1484 B] 451s Get:38 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg-dev ppc64el 8c-2ubuntu11 [1486 B] 451s Get:39 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblapack-dev ppc64el 3.12.1-7ubuntu1 [6357 kB] 462s Get:40 http://ftpmaster.internal/ubuntu resolute/main ppc64el libncurses-dev ppc64el 6.6+20251231-1 [505 kB] 462s Get:41 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpcre2-16-0 ppc64el 10.46-1 [292 kB] 462s Get:42 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpcre2-32-0 ppc64el 10.46-1 [275 kB] 462s Get:43 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpcre2-posix3 ppc64el 10.46-1 [7334 B] 462s Get:44 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpcre2-dev ppc64el 10.46-1 [937 kB] 464s Get:45 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpkgconf3 ppc64el 1.8.1-4build1 [37.9 kB] 464s Get:46 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpng-dev ppc64el 1.6.54-1 [326 kB] 464s Get:47 http://ftpmaster.internal/ubuntu resolute/main ppc64el libreadline-dev ppc64el 8.3-3 [252 kB] 464s Get:48 http://ftpmaster.internal/ubuntu resolute/main ppc64el libzstd-dev ppc64el 1.5.7+dfsg-3 [528 kB] 465s Get:49 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblzma-dev ppc64el 5.8.2-2 [210 kB] 465s Get:50 http://ftpmaster.internal/ubuntu resolute/main ppc64el pkgconf-bin ppc64el 1.8.1-4build1 [22.7 kB] 465s Get:51 http://ftpmaster.internal/ubuntu resolute/main ppc64el pkgconf ppc64el 1.8.1-4build1 [16.8 kB] 465s Get:52 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtirpc-dev ppc64el 1.3.6+ds-1 [223 kB] 465s Get:53 http://ftpmaster.internal/ubuntu resolute/universe ppc64el r-base-dev all 4.5.2-1ubuntu2 [1880 B] 465s Get:54 http://ftpmaster.internal/ubuntu resolute/universe ppc64el pkg-r-autopkgtest all 20250812 [6158 B] 465s Fetched 98.7 MB in 3min 17s (501 kB/s) 465s Selecting previously unselected package libisl23:ppc64el. 465s (Reading 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.../02-cpp-15-powerpc64le-linux-gnu_15.2.0-12ubuntu1_ppc64el.deb ... 465s Unpacking cpp-15-powerpc64le-linux-gnu (15.2.0-12ubuntu1) ... 466s Selecting previously unselected package cpp-15. 466s Preparing to unpack .../03-cpp-15_15.2.0-12ubuntu1_ppc64el.deb ... 466s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 466s Selecting previously unselected package cpp-powerpc64le-linux-gnu. 466s Preparing to unpack .../04-cpp-powerpc64le-linux-gnu_4%3a15.2.0-4ubuntu1_ppc64el.deb ... 466s Unpacking cpp-powerpc64le-linux-gnu (4:15.2.0-4ubuntu1) ... 466s Selecting previously unselected package cpp. 466s Preparing to unpack .../05-cpp_4%3a15.2.0-4ubuntu1_ppc64el.deb ... 466s Unpacking cpp (4:15.2.0-4ubuntu1) ... 466s Selecting previously unselected package libcc1-0:ppc64el. 466s Preparing to unpack .../06-libcc1-0_15.2.0-12ubuntu1_ppc64el.deb ... 466s Unpacking libcc1-0:ppc64el (15.2.0-12ubuntu1) ... 466s Selecting previously unselected package libitm1:ppc64el. 466s Preparing to unpack .../07-libitm1_15.2.0-12ubuntu1_ppc64el.deb ... 466s Unpacking libitm1:ppc64el (15.2.0-12ubuntu1) ... 466s Selecting previously unselected package libasan8:ppc64el. 466s Preparing to unpack .../08-libasan8_15.2.0-12ubuntu1_ppc64el.deb ... 466s Unpacking libasan8:ppc64el (15.2.0-12ubuntu1) ... 466s Selecting previously unselected package liblsan0:ppc64el. 466s Preparing to unpack .../09-liblsan0_15.2.0-12ubuntu1_ppc64el.deb ... 466s Unpacking liblsan0:ppc64el (15.2.0-12ubuntu1) ... 466s Selecting previously unselected package libtsan2:ppc64el. 466s Preparing to unpack .../10-libtsan2_15.2.0-12ubuntu1_ppc64el.deb ... 466s Unpacking libtsan2:ppc64el (15.2.0-12ubuntu1) ... 466s Selecting previously unselected package libubsan1:ppc64el. 466s Preparing to unpack .../11-libubsan1_15.2.0-12ubuntu1_ppc64el.deb ... 466s Unpacking libubsan1:ppc64el (15.2.0-12ubuntu1) ... 466s Selecting previously unselected package libquadmath0:ppc64el. 466s Preparing to unpack .../12-libquadmath0_15.2.0-12ubuntu1_ppc64el.deb ... 466s Unpacking libquadmath0:ppc64el (15.2.0-12ubuntu1) ... 466s Selecting previously unselected package libgcc-15-dev:ppc64el. 466s Preparing to unpack .../13-libgcc-15-dev_15.2.0-12ubuntu1_ppc64el.deb ... 466s Unpacking libgcc-15-dev:ppc64el (15.2.0-12ubuntu1) ... 466s Selecting previously unselected package gcc-15-powerpc64le-linux-gnu. 466s Preparing to unpack .../14-gcc-15-powerpc64le-linux-gnu_15.2.0-12ubuntu1_ppc64el.deb ... 466s Unpacking gcc-15-powerpc64le-linux-gnu (15.2.0-12ubuntu1) ... 466s Selecting previously unselected package gcc-15. 466s Preparing to unpack .../15-gcc-15_15.2.0-12ubuntu1_ppc64el.deb ... 466s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 466s Selecting previously unselected package gcc-powerpc64le-linux-gnu. 466s Preparing to unpack .../16-gcc-powerpc64le-linux-gnu_4%3a15.2.0-4ubuntu1_ppc64el.deb ... 466s Unpacking gcc-powerpc64le-linux-gnu (4:15.2.0-4ubuntu1) ... 466s Selecting previously unselected package gcc. 466s Preparing to unpack .../17-gcc_4%3a15.2.0-4ubuntu1_ppc64el.deb ... 466s Unpacking gcc (4:15.2.0-4ubuntu1) ... 466s Selecting previously unselected package libstdc++-15-dev:ppc64el. 466s Preparing to unpack .../18-libstdc++-15-dev_15.2.0-12ubuntu1_ppc64el.deb ... 466s Unpacking libstdc++-15-dev:ppc64el (15.2.0-12ubuntu1) ... 466s Selecting previously unselected package g++-15-powerpc64le-linux-gnu. 466s Preparing to unpack .../19-g++-15-powerpc64le-linux-gnu_15.2.0-12ubuntu1_ppc64el.deb ... 466s Unpacking g++-15-powerpc64le-linux-gnu (15.2.0-12ubuntu1) ... 467s Selecting previously unselected package g++-15. 467s Preparing to unpack .../20-g++-15_15.2.0-12ubuntu1_ppc64el.deb ... 467s Unpacking g++-15 (15.2.0-12ubuntu1) ... 467s Selecting previously unselected package g++-powerpc64le-linux-gnu. 467s Preparing to unpack .../21-g++-powerpc64le-linux-gnu_4%3a15.2.0-4ubuntu1_ppc64el.deb ... 467s Unpacking g++-powerpc64le-linux-gnu (4:15.2.0-4ubuntu1) ... 467s Selecting previously unselected package g++. 467s Preparing to unpack .../22-g++_4%3a15.2.0-4ubuntu1_ppc64el.deb ... 467s Unpacking g++ (4:15.2.0-4ubuntu1) ... 467s Selecting previously unselected package build-essential. 467s Preparing to unpack .../23-build-essential_12.12ubuntu2_ppc64el.deb ... 467s Unpacking build-essential (12.12ubuntu2) ... 467s Selecting previously unselected package dctrl-tools. 467s Preparing to unpack .../24-dctrl-tools_2.24-3build4_ppc64el.deb ... 467s Unpacking dctrl-tools (2.24-3build4) ... 467s Selecting previously unselected package libgfortran-15-dev:ppc64el. 467s Preparing to unpack .../25-libgfortran-15-dev_15.2.0-12ubuntu1_ppc64el.deb ... 467s Unpacking libgfortran-15-dev:ppc64el (15.2.0-12ubuntu1) ... 467s Selecting previously unselected package gfortran-15-powerpc64le-linux-gnu. 467s Preparing to unpack .../26-gfortran-15-powerpc64le-linux-gnu_15.2.0-12ubuntu1_ppc64el.deb ... 467s Unpacking gfortran-15-powerpc64le-linux-gnu (15.2.0-12ubuntu1) ... 467s Selecting previously unselected package gfortran-15. 467s Preparing to unpack .../27-gfortran-15_15.2.0-12ubuntu1_ppc64el.deb ... 467s Unpacking gfortran-15 (15.2.0-12ubuntu1) ... 467s Selecting previously unselected package gfortran-powerpc64le-linux-gnu. 467s Preparing to unpack .../28-gfortran-powerpc64le-linux-gnu_4%3a15.2.0-4ubuntu1_ppc64el.deb ... 467s Unpacking gfortran-powerpc64le-linux-gnu (4:15.2.0-4ubuntu1) ... 467s Selecting previously unselected package gfortran. 467s Preparing to unpack .../29-gfortran_4%3a15.2.0-4ubuntu1_ppc64el.deb ... 467s Unpacking gfortran (4:15.2.0-4ubuntu1) ... 467s Selecting previously unselected package icu-devtools. 467s Preparing to unpack .../30-icu-devtools_78.2-1ubuntu1_ppc64el.deb ... 467s Unpacking icu-devtools (78.2-1ubuntu1) ... 467s Selecting previously unselected package libblas-dev:ppc64el. 467s Preparing to unpack .../31-libblas-dev_3.12.1-7ubuntu1_ppc64el.deb ... 467s Unpacking libblas-dev:ppc64el (3.12.1-7ubuntu1) ... 467s Selecting previously unselected package libbz2-dev:ppc64el. 467s Preparing to unpack .../32-libbz2-dev_1.0.8-6build2_ppc64el.deb ... 467s Unpacking libbz2-dev:ppc64el (1.0.8-6build2) ... 467s Selecting previously unselected package libdeflate-dev:ppc64el. 467s Preparing to unpack .../33-libdeflate-dev_1.23-2build1_ppc64el.deb ... 467s Unpacking libdeflate-dev:ppc64el (1.23-2build1) ... 467s Selecting previously unselected package libicu-dev:ppc64el. 467s Preparing to unpack .../34-libicu-dev_78.2-1ubuntu1_ppc64el.deb ... 467s Unpacking libicu-dev:ppc64el (78.2-1ubuntu1) ... 467s Selecting previously unselected package libjpeg-turbo8-dev:ppc64el. 467s Preparing to unpack .../35-libjpeg-turbo8-dev_2.1.5-4ubuntu3_ppc64el.deb ... 467s Unpacking libjpeg-turbo8-dev:ppc64el (2.1.5-4ubuntu3) ... 467s Selecting previously unselected package libjpeg8-dev:ppc64el. 467s Preparing to unpack .../36-libjpeg8-dev_8c-2ubuntu11_ppc64el.deb ... 467s Unpacking libjpeg8-dev:ppc64el (8c-2ubuntu11) ... 467s Selecting previously unselected package libjpeg-dev:ppc64el. 467s Preparing to unpack .../37-libjpeg-dev_8c-2ubuntu11_ppc64el.deb ... 467s Unpacking libjpeg-dev:ppc64el (8c-2ubuntu11) ... 467s Selecting previously unselected package liblapack-dev:ppc64el. 467s Preparing to unpack .../38-liblapack-dev_3.12.1-7ubuntu1_ppc64el.deb ... 467s Unpacking liblapack-dev:ppc64el (3.12.1-7ubuntu1) ... 468s Selecting previously unselected package libncurses-dev:ppc64el. 468s Preparing to unpack .../39-libncurses-dev_6.6+20251231-1_ppc64el.deb ... 468s Unpacking libncurses-dev:ppc64el (6.6+20251231-1) ... 468s Selecting previously unselected package libpcre2-16-0:ppc64el. 468s Preparing to unpack .../40-libpcre2-16-0_10.46-1_ppc64el.deb ... 468s Unpacking libpcre2-16-0:ppc64el (10.46-1) ... 468s Selecting previously unselected package libpcre2-32-0:ppc64el. 468s Preparing to unpack .../41-libpcre2-32-0_10.46-1_ppc64el.deb ... 468s Unpacking libpcre2-32-0:ppc64el (10.46-1) ... 468s Selecting previously unselected package libpcre2-posix3:ppc64el. 468s Preparing to unpack .../42-libpcre2-posix3_10.46-1_ppc64el.deb ... 468s Unpacking libpcre2-posix3:ppc64el (10.46-1) ... 468s Selecting previously unselected package libpcre2-dev:ppc64el. 468s Preparing to unpack .../43-libpcre2-dev_10.46-1_ppc64el.deb ... 468s Unpacking libpcre2-dev:ppc64el (10.46-1) ... 468s Selecting previously unselected package libpkgconf3:ppc64el. 468s Preparing to unpack .../44-libpkgconf3_1.8.1-4build1_ppc64el.deb ... 468s Unpacking libpkgconf3:ppc64el (1.8.1-4build1) ... 468s Selecting previously unselected package libpng-dev:ppc64el. 468s Preparing to unpack .../45-libpng-dev_1.6.54-1_ppc64el.deb ... 468s Unpacking libpng-dev:ppc64el (1.6.54-1) ... 468s Selecting previously unselected package libreadline-dev:ppc64el. 468s Preparing to unpack .../46-libreadline-dev_8.3-3_ppc64el.deb ... 468s Unpacking libreadline-dev:ppc64el (8.3-3) ... 468s Selecting previously unselected package libzstd-dev:ppc64el. 468s Preparing to unpack .../47-libzstd-dev_1.5.7+dfsg-3_ppc64el.deb ... 468s Unpacking libzstd-dev:ppc64el (1.5.7+dfsg-3) ... 468s Selecting previously unselected package liblzma-dev:ppc64el. 468s Preparing to unpack .../48-liblzma-dev_5.8.2-2_ppc64el.deb ... 468s Unpacking liblzma-dev:ppc64el (5.8.2-2) ... 468s Selecting previously unselected package pkgconf-bin. 468s Preparing to unpack .../49-pkgconf-bin_1.8.1-4build1_ppc64el.deb ... 468s Unpacking pkgconf-bin (1.8.1-4build1) ... 468s Selecting previously unselected package pkgconf:ppc64el. 468s Preparing to unpack .../50-pkgconf_1.8.1-4build1_ppc64el.deb ... 468s Unpacking pkgconf:ppc64el (1.8.1-4build1) ... 468s Selecting previously unselected package libtirpc-dev:ppc64el. 468s Preparing to unpack .../51-libtirpc-dev_1.3.6+ds-1_ppc64el.deb ... 468s Unpacking libtirpc-dev:ppc64el (1.3.6+ds-1) ... 468s Selecting previously unselected package r-base-dev. 468s Preparing to unpack .../52-r-base-dev_4.5.2-1ubuntu2_all.deb ... 468s Unpacking r-base-dev (4.5.2-1ubuntu2) ... 468s Selecting previously unselected package pkg-r-autopkgtest. 468s Preparing to unpack .../53-pkg-r-autopkgtest_20250812_all.deb ... 468s Unpacking pkg-r-autopkgtest (20250812) ... 468s Setting up libjpeg-turbo8-dev:ppc64el (2.1.5-4ubuntu3) ... 468s Setting up libncurses-dev:ppc64el (6.6+20251231-1) ... 468s Setting up libzstd-dev:ppc64el (1.5.7+dfsg-3) ... 468s Setting up libpng-dev:ppc64el (1.6.54-1) ... 468s Setting up libreadline-dev:ppc64el (8.3-3) ... 468s Setting up libpcre2-16-0:ppc64el (10.46-1) ... 468s Setting up libpcre2-32-0:ppc64el (10.46-1) ... 468s Setting up libtirpc-dev:ppc64el (1.3.6+ds-1) ... 468s Setting up libpkgconf3:ppc64el (1.8.1-4build1) ... 468s Setting up libquadmath0:ppc64el (15.2.0-12ubuntu1) ... 468s Setting up libmpc3:ppc64el (1.3.1-2) ... 468s Setting up icu-devtools (78.2-1ubuntu1) ... 468s Setting up pkgconf-bin (1.8.1-4build1) ... 468s Setting up liblzma-dev:ppc64el (5.8.2-2) ... 468s Setting up libubsan1:ppc64el (15.2.0-12ubuntu1) ... 468s Setting up libpcre2-posix3:ppc64el (10.46-1) ... 468s Setting up libasan8:ppc64el (15.2.0-12ubuntu1) ... 468s Setting up libtsan2:ppc64el (15.2.0-12ubuntu1) ... 468s Setting up libjpeg8-dev:ppc64el (8c-2ubuntu11) ... 468s Setting up libisl23:ppc64el (0.27-1build1) ... 468s Setting up libdeflate-dev:ppc64el (1.23-2build1) ... 468s Setting up libicu-dev:ppc64el (78.2-1ubuntu1) ... 468s Setting up libcc1-0:ppc64el (15.2.0-12ubuntu1) ... 468s Setting up liblsan0:ppc64el (15.2.0-12ubuntu1) ... 468s Setting up libblas-dev:ppc64el (3.12.1-7ubuntu1) ... 468s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so to provide /usr/lib/powerpc64le-linux-gnu/libblas.so (libblas.so-powerpc64le-linux-gnu) in auto mode 468s Setting up dctrl-tools (2.24-3build4) ... 468s Setting up libitm1:ppc64el (15.2.0-12ubuntu1) ... 468s Setting up libbz2-dev:ppc64el (1.0.8-6build2) ... 468s Setting up libgcc-15-dev:ppc64el (15.2.0-12ubuntu1) ... 468s Setting up libpcre2-dev:ppc64el (10.46-1) ... 468s Setting up libjpeg-dev:ppc64el (8c-2ubuntu11) ... 468s Setting up libgfortran-15-dev:ppc64el (15.2.0-12ubuntu1) ... 468s Setting up pkgconf:ppc64el (1.8.1-4build1) ... 468s Setting up cpp-15-powerpc64le-linux-gnu (15.2.0-12ubuntu1) ... 468s Setting up libstdc++-15-dev:ppc64el (15.2.0-12ubuntu1) ... 468s Setting up liblapack-dev:ppc64el (3.12.1-7ubuntu1) ... 468s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so (liblapack.so-powerpc64le-linux-gnu) in auto mode 468s Setting up cpp-15 (15.2.0-12ubuntu1) ... 468s Setting up cpp-powerpc64le-linux-gnu (4:15.2.0-4ubuntu1) ... 468s Setting up gcc-15-powerpc64le-linux-gnu (15.2.0-12ubuntu1) ... 468s Setting up gcc-15 (15.2.0-12ubuntu1) ... 468s Setting up gcc-powerpc64le-linux-gnu (4:15.2.0-4ubuntu1) ... 468s Setting up gfortran-15-powerpc64le-linux-gnu (15.2.0-12ubuntu1) ... 468s Setting up cpp (4:15.2.0-4ubuntu1) ... 468s Setting up gfortran-15 (15.2.0-12ubuntu1) ... 468s Setting up g++-15-powerpc64le-linux-gnu (15.2.0-12ubuntu1) ... 468s Setting up gcc (4:15.2.0-4ubuntu1) ... 468s Setting up gfortran-powerpc64le-linux-gnu (4:15.2.0-4ubuntu1) ... 468s Setting up g++-15 (15.2.0-12ubuntu1) ... 468s Setting up g++-powerpc64le-linux-gnu (4:15.2.0-4ubuntu1) ... 468s Setting up gfortran (4:15.2.0-4ubuntu1) ... 468s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 468s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 468s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 468s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 468s Setting up g++ (4:15.2.0-4ubuntu1) ... 468s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 468s Setting up build-essential (12.12ubuntu2) ... 468s Setting up r-base-dev (4.5.2-1ubuntu2) ... 468s Setting up pkg-r-autopkgtest (20250812) ... 468s Processing triggers for libc-bin (2.42-2ubuntu4) ... 468s Processing triggers for man-db (2.13.1-1build1) ... 469s Processing triggers for install-info (7.2-5) ... 470s autopkgtest [22:51:49]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 470s autopkgtest [22:51:49]: test pkg-r-autopkgtest: [----------------------- 470s Test: Try to load the R library hexbin 471s 471s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 471s Copyright (C) 2025 The R Foundation for Statistical Computing 471s Platform: powerpc64le-unknown-linux-gnu 471s 471s R is free software and comes with ABSOLUTELY NO WARRANTY. 471s You are welcome to redistribute it under certain conditions. 471s Type 'license()' or 'licence()' for distribution details. 471s 471s R is a collaborative project with many contributors. 471s Type 'contributors()' for more information and 471s 'citation()' on how to cite R or R packages in publications. 471s 471s Type 'demo()' for some demos, 'help()' for on-line help, or 471s 'help.start()' for an HTML browser interface to help. 471s Type 'q()' to quit R. 471s 471s > library('hexbin') 471s > 471s autopkgtest [22:51:50]: test pkg-r-autopkgtest: -----------------------] 471s autopkgtest [22:51:50]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 471s pkg-r-autopkgtest PASS 472s autopkgtest [22:51:51]: @@@@@@@@@@@@@@@@@@@@ summary 472s run-unit-test PASS 472s pkg-r-autopkgtest PASS