0s autopkgtest [23:01:01]: starting date and time: 2026-02-09 23:01:01+0000 0s autopkgtest [23:01:01]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [23:01:01]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.w6k8w30r/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-bioc-tcgabiolinks --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-ppc64el-9.secgroup --name adt-resolute-ppc64el-r-bioc-tcgabiolinks-20260209-230101-juju-7f2275-prod-proposed-migration-environment-20-31fb48c6-b629-4410-ade7-68ddece97af2 --image adt/ubuntu-resolute-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-ppc64el-r-bioc-tcgabiolinks-20260209-230101-juju-7f2275-prod-proposed-migration-environment-20-31fb48c6-b629-4410-ade7-68ddece97af2 from image adt/ubuntu-resolute-ppc64el-server-20260209.img (UUID f7f31435-4cd1-4090-aa55-59cfefa097ca)... 122s autopkgtest [23:03:03]: testbed dpkg architecture: ppc64el 122s autopkgtest [23:03:03]: testbed apt version: 3.1.15 122s autopkgtest [23:03:03]: @@@@@@@@@@@@@@@@@@@@ test bed setup 122s autopkgtest [23:03:03]: testbed release detected to be: None 123s autopkgtest [23:03:04]: updating testbed package index (apt update) 123s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 123s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 123s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 123s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 124s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 128s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 128s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 128s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el Packages [246 kB] 128s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el Packages [1534 kB] 133s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse ppc64el Packages [19.4 kB] 133s Fetched 3774 kB in 10s (377 kB/s) 134s Reading package lists... 135s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 135s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 135s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 135s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 136s Reading package lists... 136s Reading package lists... 136s Building dependency tree... 136s Reading state information... 136s Calculating upgrade... 136s The following packages will be upgraded: 136s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 136s libip6tc2 libxtables12 wget 136s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 136s Need to get 3125 kB of archives. 136s After this operation, 78.8 kB of additional disk space will be used. 136s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el iptables ppc64el 1.8.11-2ubuntu3 [464 kB] 136s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el libip4tc2 ppc64el 1.8.11-2ubuntu3 [27.8 kB] 136s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el libip6tc2 ppc64el 1.8.11-2ubuntu3 [28.2 kB] 136s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxtables12 ppc64el 1.8.11-2ubuntu3 [41.2 kB] 136s Get:5 http://ftpmaster.internal/ubuntu resolute/main ppc64el iproute2 ppc64el 6.18.0-1ubuntu1 [1458 kB] 140s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcryptsetup12 ppc64el 2:2.8.0-1ubuntu3 [404 kB] 141s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el wget ppc64el 1.25.0-2ubuntu4 [401 kB] 142s Get:8 http://ftpmaster.internal/ubuntu resolute/main ppc64el cryptsetup-bin ppc64el 2:2.8.0-1ubuntu3 [250 kB] 142s Get:9 http://ftpmaster.internal/ubuntu resolute/main ppc64el dracut-install ppc64el 109-11ubuntu1 [51.3 kB] 143s dpkg-preconfigure: unable to re-open stdin: No such file or directory 143s Fetched 3125 kB in 6s (488 kB/s) 144s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 122003 files and directories currently installed.) 144s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_ppc64el.deb ... 144s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 145s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_ppc64el.deb ... 145s Unpacking libip4tc2:ppc64el (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 145s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_ppc64el.deb ... 145s Unpacking libip6tc2:ppc64el (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 145s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_ppc64el.deb ... 145s Unpacking libxtables12:ppc64el (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 145s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_ppc64el.deb ... 145s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 146s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_ppc64el.deb ... 146s Unpacking libcryptsetup12:ppc64el (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 146s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_ppc64el.deb ... 146s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 146s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_ppc64el.deb ... 146s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 146s Preparing to unpack .../8-dracut-install_109-11ubuntu1_ppc64el.deb ... 146s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 147s Setting up libip4tc2:ppc64el (1.8.11-2ubuntu3) ... 147s Setting up wget (1.25.0-2ubuntu4) ... 147s Setting up libip6tc2:ppc64el (1.8.11-2ubuntu3) ... 147s Setting up libxtables12:ppc64el (1.8.11-2ubuntu3) ... 147s Setting up dracut-install (109-11ubuntu1) ... 147s Setting up libcryptsetup12:ppc64el (2:2.8.0-1ubuntu3) ... 147s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 147s Setting up iptables (1.8.11-2ubuntu3) ... 147s Setting up iproute2 (6.18.0-1ubuntu1) ... 147s Processing triggers for man-db (2.13.1-1build1) ... 152s Processing triggers for install-info (7.2-5) ... 152s Processing triggers for libc-bin (2.42-2ubuntu4) ... 152s autopkgtest [23:03:33]: upgrading testbed (apt dist-upgrade and autopurge) 152s Reading package lists... 153s Building dependency tree... 153s Reading state information... 153s Calculating upgrade... 153s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 153s Reading package lists... 153s Building dependency tree... 153s Reading state information... 153s Solving dependencies... 153s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 156s autopkgtest [23:03:37]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 20:13:51 UTC 2026 156s autopkgtest [23:03:37]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-tcgabiolinks 174s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-tcgabiolinks 2.34.1+dfsg-1 (dsc) [2553 B] 174s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-tcgabiolinks 2.34.1+dfsg-1 (tar) [7628 kB] 174s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-tcgabiolinks 2.34.1+dfsg-1 (diff) [5196 B] 175s gpgv: Signature made Fri Mar 14 02:39:49 2025 UTC 175s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 175s gpgv: issuer "plessy@debian.org" 175s gpgv: Can't check signature: No public key 175s dpkg-source: warning: cannot verify inline signature for ./r-bioc-tcgabiolinks_2.34.1+dfsg-1.dsc: no acceptable signature found 175s autopkgtest [23:03:56]: testing package r-bioc-tcgabiolinks version 2.34.1+dfsg-1 176s autopkgtest [23:03:57]: build not needed 178s autopkgtest [23:03:59]: test pkg-r-autopkgtest: preparing testbed 178s Reading package lists... 178s Building dependency tree... 178s Reading state information... 178s Solving dependencies... 178s Some packages could not be installed. This may mean that you have 178s requested an impossible situation or if you are using the unstable 178s distribution that some required packages have not yet been created 178s or been moved out of Incoming. 178s The following information may help to resolve the situation: 178s 178s The following packages have unmet dependencies: 178s satisfy:command-line : Depends: r-bioc-tcgabiolinks but it is not going to be installed 178s Depends: r-cran-jpeg but it is not going to be installed 178s Depends: r-cran-png but it is not going to be installed 178s Depends: r-cran-rmarkdown but it is not going to be installed 178s Depends: r-cran-devtools but it is not going to be installed 178s Depends: r-cran-parmigene but it is not going to be installed 178s Depends: r-bioc-biobase but it is not going to be installed 178s Depends: r-bioc-affy but it is not going to be installed 178s Depends: r-cran-testthat but it is not going to be installed 178s Depends: r-bioc-annotationhub but it is not going to be installed 178s Depends: r-cran-seurat but it is not going to be installed 178s Depends: r-cran-circlize but it is not going to be installed 178s Depends: r-bioc-consensusclusterplus but it is not going to be installed 178s Depends: r-cran-igraph but it is not going to be installed 178s Depends: r-bioc-limma but it is not going to be installed 178s Depends: r-bioc-genefilter but it is not going to be installed 178s Depends: r-cran-gridextra but it is not going to be installed 178s Depends: r-cran-survival but it is not going to be installed 178s Depends: r-cran-doparallel but it is not going to be installed 178s Depends: r-cran-ggrepel but it is not going to be installed 178s Depends: r-cran-scales but it is not going to be installed 178s Depends: r-cran-dt but it is not going to be installed 178s Depends: pkg-r-autopkgtest but it is not going to be installed 178s Depends: r-cran-jpeg but it is not going to be installed 178s Depends: r-cran-png but it is not going to be installed 178s Depends: r-bioc-biocstyle but it is not going to be installed 178s Depends: r-cran-rmarkdown but it is not going to be installed 178s Depends: r-cran-devtools but it is not going to be installed 178s Depends: r-cran-parmigene but it is not going to be installed 178s Depends: r-bioc-biobase but it is not going to be installed 178s Depends: r-bioc-affy but it is not going to be installed 178s Depends: r-cran-testthat but it is not going to be installed 178s Depends: r-bioc-annotationhub but it is not going to be installed 178s Depends: r-bioc-experimenthub but it is not going to be installed 178s Depends: r-cran-seurat but it is not going to be installed 178s Depends: r-bioc-complexheatmap but it is not going to be installed 178s Depends: r-cran-circlize but it is not going to be installed 178s Depends: r-bioc-consensusclusterplus but it is not going to be installed 178s Depends: r-cran-igraph but it is not going to be installed 178s Depends: r-bioc-limma but it is not going to be installed 178s Depends: r-bioc-edger but it is not going to be installed 178s Depends: r-bioc-sva but it is not going to be installed 178s Depends: r-bioc-edaseq but it is not going to be installed 178s Depends: r-cran-survminer but it is not going to be installed 178s Depends: r-bioc-genefilter but it is not going to be installed 178s Depends: r-cran-gridextra but it is not going to be installed 178s Depends: r-cran-survival but it is not going to be installed 178s Depends: r-cran-doparallel but it is not going to be installed 178s Depends: r-cran-ggrepel (>= 0.6.3) but it is not going to be installed 178s Depends: r-cran-scales but it is not going to be installed 178s Depends: r-cran-dt but it is not going to be installed 178s Depends: unsupported-architecture but it is not installable 178s E: Unable to satisfy dependencies. Reached two conflicting assignments: 178s 1. satisfy:command-line:ppc64el=1 is selected for install 178s 2. satisfy:command-line:ppc64el Depends unsupported-architecture 178s but none of the choices are installable: 178s [no choices] 178s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from resolute-proposed 179s Reading package lists... 179s Building dependency tree... 179s Reading state information... 179s Solving dependencies... 179s Some packages could not be installed. This may mean that you have 179s requested an impossible situation or if you are using the unstable 179s distribution that some required packages have not yet been created 179s or been moved out of Incoming. 179s The following information may help to resolve the situation: 179s 179s The following packages have unmet dependencies: 179s satisfy:command-line : Depends: r-bioc-tcgabiolinks but it is not going to be installed 179s Depends: r-cran-jpeg but it is not going to be installed 179s Depends: r-cran-png but it is not going to be installed 179s Depends: r-cran-rmarkdown but it is not going to be installed 179s Depends: r-cran-devtools but it is not going to be installed 179s Depends: r-cran-parmigene but it is not going to be installed 179s Depends: r-bioc-biobase but it is not going to be installed 179s Depends: r-bioc-affy but it is not going to be installed 179s Depends: r-cran-testthat but it is not going to be installed 179s Depends: r-bioc-annotationhub but it is not going to be installed 179s Depends: r-cran-seurat but it is not going to be installed 179s Depends: r-cran-circlize but it is not going to be installed 179s Depends: r-bioc-consensusclusterplus but it is not going to be installed 179s Depends: r-cran-igraph but it is not going to be installed 179s Depends: r-bioc-limma but it is not going to be installed 179s Depends: r-bioc-genefilter but it is not going to be installed 179s Depends: r-cran-gridextra but it is not going to be installed 179s Depends: r-cran-survival but it is not going to be installed 179s Depends: r-cran-doparallel but it is not going to be installed 179s Depends: r-cran-ggrepel but it is not going to be installed 179s Depends: r-cran-scales but it is not going to be installed 179s Depends: r-cran-dt but it is not going to be installed 179s Depends: pkg-r-autopkgtest but it is not going to be installed 179s Depends: r-cran-jpeg but it is not going to be installed 179s Depends: r-cran-png but it is not going to be installed 179s Depends: r-bioc-biocstyle but it is not going to be installed 179s Depends: r-cran-rmarkdown but it is not going to be installed 179s Depends: r-cran-devtools but it is not going to be installed 179s Depends: r-cran-parmigene but it is not going to be installed 179s Depends: r-bioc-biobase but it is not going to be installed 179s Depends: r-bioc-affy but it is not going to be installed 179s Depends: r-cran-testthat but it is not going to be installed 179s Depends: r-bioc-annotationhub but it is not going to be installed 179s Depends: r-bioc-experimenthub but it is not going to be installed 179s Depends: r-cran-seurat but it is not going to be installed 179s Depends: r-bioc-complexheatmap but it is not going to be installed 179s Depends: r-cran-circlize but it is not going to be installed 179s Depends: r-bioc-consensusclusterplus but it is not going to be installed 179s Depends: r-cran-igraph but it is not going to be installed 179s Depends: r-bioc-limma but it is not going to be installed 179s Depends: r-bioc-edger but it is not going to be installed 179s Depends: r-bioc-sva but it is not going to be installed 179s Depends: r-bioc-edaseq but it is not going to be installed 179s Depends: r-cran-survminer but it is not going to be installed 179s Depends: r-bioc-genefilter but it is not going to be installed 179s Depends: r-cran-gridextra but it is not going to be installed 179s Depends: r-cran-survival but it is not going to be installed 179s Depends: r-cran-doparallel but it is not going to be installed 179s Depends: r-cran-ggrepel (>= 0.6.3) but it is not going to be installed 179s Depends: r-cran-scales but it is not going to be installed 179s Depends: r-cran-dt but it is not going to be installed 179s Depends: unsupported-architecture but it is not installable 179s E: Unable to satisfy dependencies. Reached two conflicting assignments: 179s 1. satisfy:command-line:ppc64el=1 is selected for install 179s 2. satisfy:command-line:ppc64el Depends unsupported-architecture 179s but none of the choices are installable: 179s [no choices] 179s pkg-r-autopkgtest SKIP installation fails and skip-not-installable set 179s autopkgtest [23:04:00]: @@@@@@@@@@@@@@@@@@@@ summary 179s pkg-r-autopkgtest SKIP installation fails and skip-not-installable set