0s autopkgtest [22:58:47]: starting date and time: 2026-02-09 22:58:47+0000 0s autopkgtest [22:58:47]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [22:58:47]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.y7fo0oks/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-bioc-mofa --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-ppc64el-30.secgroup --name adt-resolute-ppc64el-r-bioc-mofa-20260209-225847-juju-7f2275-prod-proposed-migration-environment-20-2d4e836a-692e-490f-92c3-35dd3ebd7bc4 --image adt/ubuntu-resolute-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-ppc64el-r-bioc-mofa-20260209-225847-juju-7f2275-prod-proposed-migration-environment-20-2d4e836a-692e-490f-92c3-35dd3ebd7bc4 from image adt/ubuntu-resolute-ppc64el-server-20260209.img (UUID f7f31435-4cd1-4090-aa55-59cfefa097ca)... 113s autopkgtest [23:00:40]: testbed dpkg architecture: ppc64el 113s autopkgtest [23:00:40]: testbed apt version: 3.1.15 113s autopkgtest [23:00:40]: @@@@@@@@@@@@@@@@@@@@ test bed setup 114s autopkgtest [23:00:41]: testbed release detected to be: None 114s autopkgtest [23:00:41]: updating testbed package index (apt update) 114s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 114s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 115s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 115s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 115s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 115s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 115s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 119s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el Packages [246 kB] 119s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el Packages [1534 kB] 123s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse ppc64el Packages [19.4 kB] 123s Fetched 3774 kB in 9s (432 kB/s) 124s Reading package lists... 125s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 125s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 125s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 125s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 126s Reading package lists... 126s Reading package lists... 126s Building dependency tree... 126s Reading state information... 126s Calculating upgrade... 126s The following packages will be upgraded: 126s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 126s libip6tc2 libxtables12 wget 126s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 126s Need to get 3125 kB of archives. 126s After this operation, 78.8 kB of additional disk space will be used. 126s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el iptables ppc64el 1.8.11-2ubuntu3 [464 kB] 126s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el libip4tc2 ppc64el 1.8.11-2ubuntu3 [27.8 kB] 126s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el libip6tc2 ppc64el 1.8.11-2ubuntu3 [28.2 kB] 126s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxtables12 ppc64el 1.8.11-2ubuntu3 [41.2 kB] 126s Get:5 http://ftpmaster.internal/ubuntu resolute/main ppc64el iproute2 ppc64el 6.18.0-1ubuntu1 [1458 kB] 128s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcryptsetup12 ppc64el 2:2.8.0-1ubuntu3 [404 kB] 128s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el wget ppc64el 1.25.0-2ubuntu4 [401 kB] 128s Get:8 http://ftpmaster.internal/ubuntu resolute/main ppc64el cryptsetup-bin ppc64el 2:2.8.0-1ubuntu3 [250 kB] 128s Get:9 http://ftpmaster.internal/ubuntu resolute/main ppc64el dracut-install ppc64el 109-11ubuntu1 [51.3 kB] 129s dpkg-preconfigure: unable to re-open stdin: No such file or directory 129s Fetched 3125 kB in 2s (1289 kB/s) 129s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 122003 files and directories currently installed.) 129s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_ppc64el.deb ... 129s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 129s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_ppc64el.deb ... 129s Unpacking libip4tc2:ppc64el (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 129s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_ppc64el.deb ... 129s Unpacking libip6tc2:ppc64el (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 129s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_ppc64el.deb ... 129s Unpacking libxtables12:ppc64el (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 129s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_ppc64el.deb ... 130s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 130s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_ppc64el.deb ... 130s Unpacking libcryptsetup12:ppc64el (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 130s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_ppc64el.deb ... 130s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 130s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_ppc64el.deb ... 130s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 130s Preparing to unpack .../8-dracut-install_109-11ubuntu1_ppc64el.deb ... 130s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 130s Setting up libip4tc2:ppc64el (1.8.11-2ubuntu3) ... 130s Setting up wget (1.25.0-2ubuntu4) ... 130s Setting up libip6tc2:ppc64el (1.8.11-2ubuntu3) ... 130s Setting up libxtables12:ppc64el (1.8.11-2ubuntu3) ... 130s Setting up dracut-install (109-11ubuntu1) ... 130s Setting up libcryptsetup12:ppc64el (2:2.8.0-1ubuntu3) ... 130s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 130s Setting up iptables (1.8.11-2ubuntu3) ... 130s Setting up iproute2 (6.18.0-1ubuntu1) ... 131s Processing triggers for man-db (2.13.1-1build1) ... 132s Processing triggers for install-info (7.2-5) ... 132s Processing triggers for libc-bin (2.42-2ubuntu4) ... 132s autopkgtest [23:00:59]: upgrading testbed (apt dist-upgrade and autopurge) 132s Reading package lists... 133s Building dependency tree... 133s Reading state information... 133s Calculating upgrade... 133s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 133s Reading package lists... 133s Building dependency tree... 133s Reading state information... 133s Solving dependencies... 133s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 135s autopkgtest [23:01:02]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 20:13:51 UTC 2026 136s autopkgtest [23:01:03]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-mofa 138s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-mofa 1.6.1+dfsg-16 (dsc) [2562 B] 138s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-mofa 1.6.1+dfsg-16 (tar) [915 kB] 138s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-mofa 1.6.1+dfsg-16 (diff) [5008 B] 139s gpgv: Signature made Wed Sep 24 20:55:53 2025 UTC 139s gpgv: using RSA key 67CB311005C4EDBE32175308DEE50D0D567EA266 139s gpgv: issuer "rebecca_palmer@zoho.com" 139s gpgv: Can't check signature: No public key 139s dpkg-source: warning: cannot verify inline signature for ./r-bioc-mofa_1.6.1+dfsg-16.dsc: no acceptable signature found 139s autopkgtest [23:01:06]: testing package r-bioc-mofa version 1.6.1+dfsg-16 139s autopkgtest [23:01:06]: build not needed 139s autopkgtest [23:01:06]: test autodep8-python3: preparing testbed 140s Reading package lists... 140s Building dependency tree... 140s Reading state information... 140s Solving dependencies... 140s The following NEW packages will be installed: 140s libblas3 libgfortran5 libhdf5-310 libhdf5-hl-310 liblapack3 liblzf1 140s libqhull-r8.0 libsz2 python3-all python3-decorator python3-h5py 140s python3-h5py-serial python3-mofapy python3-numpy python3-numpy-dev 140s python3-pandas python3-pandas-lib python3-pytz python3-scipy python3.14 140s python3.14-minimal 140s 0 upgraded, 21 newly installed, 0 to remove and 0 not upgraded. 140s Need to get 47.8 MB of archives. 140s After this operation, 286 MB of additional disk space will be used. 140s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy-dev ppc64el 1:2.3.5+ds-3 [153 kB] 140s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el libblas3 ppc64el 3.12.1-7ubuntu1 [291 kB] 140s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgfortran5 ppc64el 15.2.0-12ubuntu1 [620 kB] 141s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblapack3 ppc64el 3.12.1-7ubuntu1 [2960 kB] 146s Get:5 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy ppc64el 1:2.3.5+ds-3 [5722 kB] 157s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.14-minimal ppc64el 3.14.2-1 [2712 kB] 163s Get:7 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libsz2 ppc64el 1.1.5-1 [25.3 kB] 163s Get:8 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libhdf5-310 ppc64el 1.14.6+repack-2 [1545 kB] 167s Get:9 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libhdf5-hl-310 ppc64el 1.14.6+repack-2 [76.3 kB] 167s Get:10 http://ftpmaster.internal/ubuntu resolute/universe ppc64el liblzf1 ppc64el 3.6-4build1 [8064 B] 167s Get:11 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libqhull-r8.0 ppc64el 2020.2-8 [227 kB] 167s Get:12 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.14 ppc64el 3.14.2-1 [816 kB] 168s Get:13 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-all ppc64el 3.13.9-3 [890 B] 168s Get:14 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-decorator all 5.2.1-2 [28.1 kB] 168s Get:15 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-h5py-serial ppc64el 3.15.1-4 [1668 kB] 170s Get:16 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-h5py all 3.15.1-4 [11.3 kB] 170s Get:17 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pytz all 2025.2-5 [32.4 kB] 170s Get:18 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pandas-lib ppc64el 2.3.3+dfsg-3 [7213 kB] 202s Get:19 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pandas all 2.3.3+dfsg-3 [2948 kB] 207s Get:20 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-scipy ppc64el 1.16.3-4 [20.7 MB] 244s Get:21 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-mofapy all 1.6.1+dfsg-16 [34.9 kB] 244s Fetched 47.8 MB in 1min 44s (458 kB/s) 244s Selecting previously unselected package python3-numpy-dev:ppc64el. 244s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 122006 files and directories currently installed.) 244s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.5+ds-3_ppc64el.deb ... 244s Unpacking python3-numpy-dev:ppc64el (1:2.3.5+ds-3) ... 244s Selecting previously unselected package libblas3:ppc64el. 244s Preparing to unpack .../01-libblas3_3.12.1-7ubuntu1_ppc64el.deb ... 244s Unpacking libblas3:ppc64el (3.12.1-7ubuntu1) ... 245s Selecting previously unselected package libgfortran5:ppc64el. 245s Preparing to unpack .../02-libgfortran5_15.2.0-12ubuntu1_ppc64el.deb ... 245s Unpacking libgfortran5:ppc64el (15.2.0-12ubuntu1) ... 245s Selecting previously unselected package liblapack3:ppc64el. 245s Preparing to unpack .../03-liblapack3_3.12.1-7ubuntu1_ppc64el.deb ... 245s Unpacking liblapack3:ppc64el (3.12.1-7ubuntu1) ... 245s Selecting previously unselected package python3-numpy. 245s Preparing to unpack .../04-python3-numpy_1%3a2.3.5+ds-3_ppc64el.deb ... 245s Unpacking python3-numpy (1:2.3.5+ds-3) ... 245s Selecting previously unselected package python3.14-minimal. 245s Preparing to unpack .../05-python3.14-minimal_3.14.2-1_ppc64el.deb ... 245s Unpacking python3.14-minimal (3.14.2-1) ... 245s Selecting previously unselected package libsz2:ppc64el. 245s Preparing to unpack .../06-libsz2_1.1.5-1_ppc64el.deb ... 245s Unpacking libsz2:ppc64el (1.1.5-1) ... 245s Selecting previously unselected package libhdf5-310:ppc64el. 245s Preparing to unpack .../07-libhdf5-310_1.14.6+repack-2_ppc64el.deb ... 245s Unpacking libhdf5-310:ppc64el (1.14.6+repack-2) ... 245s Selecting previously unselected package libhdf5-hl-310:ppc64el. 245s Preparing to unpack .../08-libhdf5-hl-310_1.14.6+repack-2_ppc64el.deb ... 245s Unpacking libhdf5-hl-310:ppc64el (1.14.6+repack-2) ... 245s Selecting previously unselected package liblzf1:ppc64el. 245s Preparing to unpack .../09-liblzf1_3.6-4build1_ppc64el.deb ... 245s Unpacking liblzf1:ppc64el (3.6-4build1) ... 245s Selecting previously unselected package libqhull-r8.0:ppc64el. 245s Preparing to unpack .../10-libqhull-r8.0_2020.2-8_ppc64el.deb ... 245s Unpacking libqhull-r8.0:ppc64el (2020.2-8) ... 245s Selecting previously unselected package python3.14. 245s Preparing to unpack .../11-python3.14_3.14.2-1_ppc64el.deb ... 245s Unpacking python3.14 (3.14.2-1) ... 245s Selecting previously unselected package python3-all. 245s Preparing to unpack .../12-python3-all_3.13.9-3_ppc64el.deb ... 245s Unpacking python3-all (3.13.9-3) ... 245s Selecting previously unselected package python3-decorator. 245s Preparing to unpack .../13-python3-decorator_5.2.1-2_all.deb ... 245s Unpacking python3-decorator (5.2.1-2) ... 245s Selecting previously unselected package python3-h5py-serial. 245s Preparing to unpack .../14-python3-h5py-serial_3.15.1-4_ppc64el.deb ... 245s Unpacking python3-h5py-serial (3.15.1-4) ... 245s Selecting previously unselected package python3-h5py. 245s Preparing to unpack .../15-python3-h5py_3.15.1-4_all.deb ... 245s Unpacking python3-h5py (3.15.1-4) ... 245s Selecting previously unselected package python3-pytz. 245s Preparing to unpack .../16-python3-pytz_2025.2-5_all.deb ... 245s Unpacking python3-pytz (2025.2-5) ... 245s Selecting previously unselected package python3-pandas-lib:ppc64el. 245s Preparing to unpack .../17-python3-pandas-lib_2.3.3+dfsg-3_ppc64el.deb ... 245s Unpacking python3-pandas-lib:ppc64el (2.3.3+dfsg-3) ... 245s Selecting previously unselected package python3-pandas. 245s Preparing to unpack .../18-python3-pandas_2.3.3+dfsg-3_all.deb ... 245s Unpacking python3-pandas (2.3.3+dfsg-3) ... 246s Selecting previously unselected package python3-scipy. 246s Preparing to unpack .../19-python3-scipy_1.16.3-4_ppc64el.deb ... 246s Unpacking python3-scipy (1.16.3-4) ... 247s Selecting previously unselected package python3-mofapy. 247s Preparing to unpack .../20-python3-mofapy_1.6.1+dfsg-16_all.deb ... 247s Unpacking python3-mofapy (1.6.1+dfsg-16) ... 247s Setting up libqhull-r8.0:ppc64el (2020.2-8) ... 247s Setting up python3-pytz (2025.2-5) ... 247s Setting up python3-decorator (5.2.1-2) ... 247s Setting up libblas3:ppc64el (3.12.1-7ubuntu1) ... 247s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 247s Setting up liblzf1:ppc64el (3.6-4build1) ... 247s Setting up python3-numpy-dev:ppc64el (1:2.3.5+ds-3) ... 247s Setting up libgfortran5:ppc64el (15.2.0-12ubuntu1) ... 247s Setting up python3.14-minimal (3.14.2-1) ... 248s Setting up libsz2:ppc64el (1.1.5-1) ... 248s Setting up liblapack3:ppc64el (3.12.1-7ubuntu1) ... 248s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 248s Setting up python3-numpy (1:2.3.5+ds-3) ... 252s Setting up libhdf5-310:ppc64el (1.14.6+repack-2) ... 252s Setting up python3.14 (3.14.2-1) ... 253s Setting up libhdf5-hl-310:ppc64el (1.14.6+repack-2) ... 253s Setting up python3-scipy (1.16.3-4) ... 260s Setting up python3-pandas-lib:ppc64el (2.3.3+dfsg-3) ... 260s Setting up python3-h5py-serial (3.15.1-4) ... 261s Setting up python3-all (3.13.9-3) ... 261s Setting up python3-pandas (2.3.3+dfsg-3) ... 270s Setting up python3-h5py (3.15.1-4) ... 270s Setting up python3-mofapy (1.6.1+dfsg-16) ... 270s Processing triggers for libc-bin (2.42-2ubuntu4) ... 270s Processing triggers for systemd (259-1ubuntu3) ... 270s Processing triggers for man-db (2.13.1-1build1) ... 272s autopkgtest [23:03:19]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import mofapy; print(mofapy)" ; done 272s autopkgtest [23:03:19]: test autodep8-python3: [----------------------- 273s Testing with python3.14: 273s autopkgtest [23:03:19]: test autodep8-python3: -----------------------] 273s 273s Testing with python3.13: 273s 273s autopkgtest [23:03:20]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 273s autodep8-python3 PASS (superficial) 273s autopkgtest [23:03:20]: @@@@@@@@@@@@@@@@@@@@ summary 273s autodep8-python3 PASS (superficial)