0s autopkgtest [22:54:59]: starting date and time: 2026-02-09 22:54:59+0000 0s autopkgtest [22:54:59]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [22:54:59]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.cqvaz2al/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade qcumber --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/4.0.2+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-ppc64el-8.secgroup --name adt-resolute-ppc64el-qcumber-20260209-225459-juju-7f2275-prod-proposed-migration-environment-2-fe4d8042-5137-426c-afca-60cc15c327cd --image adt/ubuntu-resolute-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-ppc64el-qcumber-20260209-225459-juju-7f2275-prod-proposed-migration-environment-2-fe4d8042-5137-426c-afca-60cc15c327cd from image adt/ubuntu-resolute-ppc64el-server-20260209.img (UUID f7f31435-4cd1-4090-aa55-59cfefa097ca)... 107s autopkgtest [22:56:46]: testbed dpkg architecture: ppc64el 107s autopkgtest [22:56:46]: testbed apt version: 3.1.15 107s autopkgtest [22:56:46]: @@@@@@@@@@@@@@@@@@@@ test bed setup 107s autopkgtest [22:56:46]: testbed release detected to be: None 108s autopkgtest [22:56:47]: updating testbed package index (apt update) 108s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 108s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 108s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 108s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 108s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 108s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 111s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 111s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el Packages [246 kB] 111s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el Packages [1534 kB] 113s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse ppc64el Packages [19.4 kB] 113s Fetched 3774 kB in 5s (718 kB/s) 114s Reading package lists... 115s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 115s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 115s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 115s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 116s Reading package lists... 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 116s Calculating upgrade... 116s The following packages will be upgraded: 116s cryptsetup-bin dracut-install iproute2 iptables libcryptsetup12 libip4tc2 116s libip6tc2 libxtables12 wget 116s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 116s Need to get 3125 kB of archives. 116s After this operation, 78.8 kB of additional disk space will be used. 116s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el iptables ppc64el 1.8.11-2ubuntu3 [464 kB] 116s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el libip4tc2 ppc64el 1.8.11-2ubuntu3 [27.8 kB] 116s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el libip6tc2 ppc64el 1.8.11-2ubuntu3 [28.2 kB] 116s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxtables12 ppc64el 1.8.11-2ubuntu3 [41.2 kB] 117s Get:5 http://ftpmaster.internal/ubuntu resolute/main ppc64el iproute2 ppc64el 6.18.0-1ubuntu1 [1458 kB] 119s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcryptsetup12 ppc64el 2:2.8.0-1ubuntu3 [404 kB] 119s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el wget ppc64el 1.25.0-2ubuntu4 [401 kB] 119s Get:8 http://ftpmaster.internal/ubuntu resolute/main ppc64el cryptsetup-bin ppc64el 2:2.8.0-1ubuntu3 [250 kB] 119s Get:9 http://ftpmaster.internal/ubuntu resolute/main ppc64el dracut-install ppc64el 109-11ubuntu1 [51.3 kB] 119s dpkg-preconfigure: unable to re-open stdin: No such file or directory 119s Fetched 3125 kB in 2s (1372 kB/s) 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 122003 files and directories currently installed.) 120s Preparing to unpack .../0-iptables_1.8.11-2ubuntu3_ppc64el.deb ... 120s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 120s Preparing to unpack .../1-libip4tc2_1.8.11-2ubuntu3_ppc64el.deb ... 120s Unpacking libip4tc2:ppc64el (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 120s Preparing to unpack .../2-libip6tc2_1.8.11-2ubuntu3_ppc64el.deb ... 120s Unpacking libip6tc2:ppc64el (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 120s Preparing to unpack .../3-libxtables12_1.8.11-2ubuntu3_ppc64el.deb ... 120s Unpacking libxtables12:ppc64el (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ... 121s Preparing to unpack .../4-iproute2_6.18.0-1ubuntu1_ppc64el.deb ... 121s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ... 122s Preparing to unpack .../5-libcryptsetup12_2%3a2.8.0-1ubuntu3_ppc64el.deb ... 122s Unpacking libcryptsetup12:ppc64el (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 122s Preparing to unpack .../6-wget_1.25.0-2ubuntu4_ppc64el.deb ... 122s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ... 122s Preparing to unpack .../7-cryptsetup-bin_2%3a2.8.0-1ubuntu3_ppc64el.deb ... 122s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ... 122s Preparing to unpack .../8-dracut-install_109-11ubuntu1_ppc64el.deb ... 122s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ... 122s Setting up libip4tc2:ppc64el (1.8.11-2ubuntu3) ... 122s Setting up wget (1.25.0-2ubuntu4) ... 122s Setting up libip6tc2:ppc64el (1.8.11-2ubuntu3) ... 122s Setting up libxtables12:ppc64el (1.8.11-2ubuntu3) ... 123s Setting up dracut-install (109-11ubuntu1) ... 123s Setting up libcryptsetup12:ppc64el (2:2.8.0-1ubuntu3) ... 123s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 123s Setting up iptables (1.8.11-2ubuntu3) ... 123s Setting up iproute2 (6.18.0-1ubuntu1) ... 123s Processing triggers for man-db (2.13.1-1build1) ... 124s Processing triggers for install-info (7.2-5) ... 125s Processing triggers for libc-bin (2.42-2ubuntu4) ... 125s autopkgtest [22:57:04]: upgrading testbed (apt dist-upgrade and autopurge) 125s Reading package lists... 125s Building dependency tree... 125s Reading state information... 125s Calculating upgrade... 125s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 125s Reading package lists... 125s Building dependency tree... 125s Reading state information... 126s Solving dependencies... 126s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 128s autopkgtest [22:57:07]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 20:13:51 UTC 2026 128s autopkgtest [22:57:07]: @@@@@@@@@@@@@@@@@@@@ apt-source qcumber 130s Get:1 http://ftpmaster.internal/ubuntu resolute/universe qcumber 2.3.0-3 (dsc) [1784 B] 130s Get:2 http://ftpmaster.internal/ubuntu resolute/universe qcumber 2.3.0-3 (tar) [262 kB] 130s Get:3 http://ftpmaster.internal/ubuntu resolute/universe qcumber 2.3.0-3 (diff) [130 kB] 130s gpgv: Signature made Thu Nov 20 17:33:23 2025 UTC 130s gpgv: using RSA key D54C3BFAFFB042DE382DA5D741CE7F0B9F1B8B32 130s gpgv: Can't check signature: No public key 130s dpkg-source: warning: cannot verify inline signature for ./qcumber_2.3.0-3.dsc: no acceptable signature found 130s autopkgtest [22:57:09]: testing package qcumber version 2.3.0-3 131s autopkgtest [22:57:10]: build not needed 131s autopkgtest [22:57:10]: test run-unit-test: preparing testbed 131s Reading package lists... 131s Building dependency tree... 131s Reading state information... 131s Solving dependencies... 131s The following NEW packages will be installed: 131s coinor-cbc coinor-libcbc3.1 coinor-libcgl1 coinor-libclp1 131s coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common dwgsim 131s fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 131s fonts-glyphicons-halflings fonts-urw-base35 git git-man libblas3 libcairo2 131s libdatrie1 libdeflate0 liberror-perl libfontconfig1 libfontenc1 libgfortran5 131s libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 131s libjpeg8 libjs-bootstrap libjs-jquery liblapack3 liblcms2-2 liblerc4 131s libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7 131s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 131s python3-biopython python3-cairo python3-charset-normalizer 131s python3-configargparse python3-connection-pool python3-datrie 131s python3-decorator python3-docutils python3-dpath python3-fastjsonschema 131s python3-freetype python3-git python3-gitdb python3-humanfriendly 131s python3-jupyter-core python3-nbformat python3-numpy python3-numpy-dev 131s python3-pandas python3-pandas-lib python3-pil python3-plac 131s python3-platformdirs python3-psutil python3-pulp python3-pytz 131s python3-reportlab python3-retry python3-rlpycairo python3-roman-numerals 131s python3-smart-open python3-smmap python3-stopit python3-tabulate 131s python3-throttler python3-toposort python3-traitlets python3-wrapt 131s python3-yte sgml-base snakemake w3c-sgml-lib x11-common xfonts-encodings 131s xfonts-utils xml-core 131s 0 upgraded, 93 newly installed, 0 to remove and 0 not upgraded. 131s Need to get 58.4 MB of archives. 131s After this operation, 255 MB of additional disk space will be used. 131s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy-dev ppc64el 1:2.3.5+ds-3 [153 kB] 131s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el libblas3 ppc64el 3.12.1-7ubuntu1 [291 kB] 131s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgfortran5 ppc64el 15.2.0-12ubuntu1 [620 kB] 133s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblapack3 ppc64el 3.12.1-7ubuntu1 [2960 kB] 138s Get:5 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy ppc64el 1:2.3.5+ds-3 [5722 kB] 151s Get:6 http://ftpmaster.internal/ubuntu resolute/universe ppc64el coinor-libcoinutils3v5 ppc64el 2.11.12+ds-1 [651 kB] 152s Get:7 http://ftpmaster.internal/ubuntu resolute/universe ppc64el coinor-libosi1v5 ppc64el 0.108.11+ds-1 [309 kB] 152s Get:8 http://ftpmaster.internal/ubuntu resolute/universe ppc64el coinor-libclp1 ppc64el 1.17.10+ds-1build1 [1090 kB] 154s Get:9 http://ftpmaster.internal/ubuntu resolute/universe ppc64el coinor-libcgl1 ppc64el 0.60.9+ds-1build1 [506 kB] 155s Get:10 http://ftpmaster.internal/ubuntu resolute/universe ppc64el coinor-libcbc3.1 ppc64el 2.10.12+ds-1build1 [856 kB] 156s Get:11 http://ftpmaster.internal/ubuntu resolute/main ppc64el sgml-base all 1.31+nmu1build1 [11.2 kB] 156s Get:12 http://ftpmaster.internal/ubuntu resolute/main ppc64el xml-core all 0.19build1 [20.3 kB] 156s Get:13 http://ftpmaster.internal/ubuntu resolute/main ppc64el docutils-common all 0.22.4+dfsg-1 [130 kB] 156s Get:14 http://ftpmaster.internal/ubuntu resolute/universe ppc64el dwgsim ppc64el 0.1.14-4build1 [49.4 kB] 156s Get:15 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-dejavu-mono all 2.37-8build1 [502 kB] 156s Get:16 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-dejavu-core all 2.37-8build1 [834 kB] 157s Get:17 http://ftpmaster.internal/ubuntu resolute/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build2 [16.1 kB] 157s Get:18 http://ftpmaster.internal/ubuntu resolute/main ppc64el x11-common all 1:7.7+24ubuntu1 [22.4 kB] 157s Get:19 http://ftpmaster.internal/ubuntu resolute/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu3 [576 kB] 158s Get:20 http://ftpmaster.internal/ubuntu resolute/main ppc64el xfonts-utils ppc64el 1:7.7+7build1 [115 kB] 158s Get:21 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-urw-base35 all 20200910-8build1 [10.9 MB] 176s Get:22 http://ftpmaster.internal/ubuntu resolute/main ppc64el fontconfig-config ppc64el 2.17.1-3ubuntu1 [38.5 kB] 176s Get:23 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-dejavu-extra all 2.37-8build1 [1944 kB] 179s Get:24 http://ftpmaster.internal/ubuntu resolute/universe ppc64el fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 179s Get:25 http://ftpmaster.internal/ubuntu resolute/main ppc64el liberror-perl all 0.17030-1 [23.5 kB] 179s Get:26 http://ftpmaster.internal/ubuntu resolute/main ppc64el git-man all 1:2.51.0-1ubuntu1 [1179 kB] 180s Get:27 http://ftpmaster.internal/ubuntu resolute/main ppc64el git ppc64el 1:2.51.0-1ubuntu1 [7646 kB] 192s Get:28 http://ftpmaster.internal/ubuntu resolute/main ppc64el libfontconfig1 ppc64el 2.17.1-3ubuntu1 [193 kB] 192s Get:29 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpixman-1-0 ppc64el 0.46.4-1 [347 kB] 192s Get:30 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-render0 ppc64el 1.17.0-2ubuntu1 [17.4 kB] 192s Get:31 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-shm0 ppc64el 1.17.0-2ubuntu1 [6072 B] 192s Get:32 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxrender1 ppc64el 1:0.9.12-1 [23.0 kB] 192s Get:33 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcairo2 ppc64el 1.18.4-3 [759 kB] 193s Get:34 http://ftpmaster.internal/ubuntu resolute/main ppc64el libdatrie1 ppc64el 0.2.14-1 [22.7 kB] 193s Get:35 http://ftpmaster.internal/ubuntu resolute/main ppc64el libdeflate0 ppc64el 1.23-2build1 [64.1 kB] 193s Get:36 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgomp1 ppc64el 15.2.0-12ubuntu1 [169 kB] 193s Get:37 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgraphite2-3 ppc64el 1.3.14-11ubuntu1 [85.3 kB] 193s Get:38 http://ftpmaster.internal/ubuntu resolute/main ppc64el libharfbuzz0b ppc64el 12.3.2-1 [663 kB] 194s Get:39 http://ftpmaster.internal/ubuntu resolute/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 194s Get:40 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-4ubuntu3 [214 kB] 194s Get:41 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 194s Get:42 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 194s Get:43 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 194s Get:44 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblcms2-2 ppc64el 2.17-1 [246 kB] 194s Get:45 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu2 [315 kB] 194s Get:46 http://ftpmaster.internal/ubuntu resolute/main ppc64el libraqm0 ppc64el 0.10.4-1 [19.7 kB] 194s Get:47 http://ftpmaster.internal/ubuntu resolute/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1build1 [24.7 kB] 194s Get:48 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu3 [37.1 kB] 194s Get:49 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebp7 ppc64el 1.5.0-0.1build1 [330 kB] 194s Get:50 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtiff6 ppc64el 4.7.0-3ubuntu3 [307 kB] 194s Get:51 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebpdemux2 ppc64el 1.5.0-0.1build1 [14.8 kB] 194s Get:52 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebpmux3 ppc64el 1.5.0-0.1build1 [31.3 kB] 194s Get:53 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-charset-normalizer ppc64el 3.4.4-2 [175 kB] 194s Get:54 http://ftpmaster.internal/ubuntu resolute/main ppc64el libopenjp2-7 ppc64el 2.5.4-1 [251 kB] 194s Get:55 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-pil ppc64el 12.0.0-1ubuntu1 [645 kB] 195s Get:56 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-cairo ppc64el 1.27.0-2build1 [150 kB] 195s Get:57 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-freetype all 2.5.1-2 [92.2 kB] 195s Get:58 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-rlpycairo all 0.3.0-4 [9332 B] 195s Get:59 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-reportlab all 4.4.9-1 [1149 kB] 197s Get:60 http://ftpmaster.internal/ubuntu resolute/universe ppc64el w3c-sgml-lib all 1.3-3build1 [278 kB] 197s Get:61 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-biopython ppc64el 1.86+dfsg-1 [1726 kB] 200s Get:62 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-configargparse all 1.7-2 [31.7 kB] 200s Get:63 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-connection-pool all 0.0.3-2build1 [5792 B] 200s Get:64 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-datrie ppc64el 0.8.3-2 [204 kB] 200s Get:65 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-decorator all 5.2.1-2 [28.1 kB] 200s Get:66 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-roman-numerals all 4.1.0-1 [8660 B] 200s Get:67 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-docutils all 0.22.4+dfsg-1 [439 kB] 200s Get:68 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-dpath all 2.2.0-2 [20.3 kB] 200s Get:69 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-fastjsonschema all 2.21.1-1 [20.4 kB] 200s Get:70 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-smmap all 6.0.0-1build1 [20.7 kB] 200s Get:71 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-gitdb all 4.0.12-1 [46.4 kB] 200s Get:72 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-git all 3.1.46-1 [149 kB] 200s Get:73 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-humanfriendly all 10.0-6build1 [70.9 kB] 200s Get:74 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-platformdirs all 4.5.1-1 [17.1 kB] 200s Get:75 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-traitlets all 5.14.3+really5.14.3-2 [71.7 kB] 200s Get:76 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-jupyter-core all 5.9.1-1 [28.9 kB] 200s Get:77 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-nbformat all 5.10.4-1 [39.2 kB] 200s Get:78 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pytz all 2025.2-5 [32.4 kB] 200s Get:79 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pandas-lib ppc64el 2.3.3+dfsg-3 [7213 kB] 210s Get:80 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pandas all 2.3.3+dfsg-3 [2948 kB] 216s Get:81 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-plac all 1.4.3-2 [63.2 kB] 216s Get:82 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-psutil ppc64el 7.1.0-1ubuntu1 [192 kB] 216s Get:83 http://ftpmaster.internal/ubuntu resolute/universe ppc64el coinor-cbc ppc64el 2.10.12+ds-1build1 [14.2 kB] 216s Get:84 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pulp all 2.7.0+dfsg-4 [71.4 kB] 216s Get:85 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-retry all 0.9.2-5 [6160 B] 216s Get:86 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-wrapt ppc64el 1.17.3-3 [42.0 kB] 216s Get:87 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-smart-open all 7.5.0-1 [56.9 kB] 216s Get:88 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-stopit all 1.1.2-4 [12.9 kB] 216s Get:89 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-tabulate all 0.9.0-1build1 [45.4 kB] 216s Get:90 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-throttler all 1.2.2-4ubuntu1 [7758 B] 216s Get:91 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-toposort all 1.10-2build1 [6454 B] 216s Get:92 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-yte all 1.5.4-1build1 [12.2 kB] 217s Get:93 http://ftpmaster.internal/ubuntu resolute/universe ppc64el snakemake all 7.32.4-8.1 [275 kB] 217s Fetched 58.4 MB in 1min 25s (683 kB/s) 217s Selecting previously unselected package python3-numpy-dev:ppc64el. 217s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 122006 files and directories currently installed.) 217s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.5+ds-3_ppc64el.deb ... 217s Unpacking python3-numpy-dev:ppc64el (1:2.3.5+ds-3) ... 217s Selecting previously unselected package libblas3:ppc64el. 217s Preparing to unpack .../01-libblas3_3.12.1-7ubuntu1_ppc64el.deb ... 217s Unpacking libblas3:ppc64el (3.12.1-7ubuntu1) ... 217s Selecting previously unselected package libgfortran5:ppc64el. 217s Preparing to unpack .../02-libgfortran5_15.2.0-12ubuntu1_ppc64el.deb ... 217s Unpacking libgfortran5:ppc64el (15.2.0-12ubuntu1) ... 217s Selecting previously unselected package liblapack3:ppc64el. 217s Preparing to unpack .../03-liblapack3_3.12.1-7ubuntu1_ppc64el.deb ... 217s Unpacking liblapack3:ppc64el (3.12.1-7ubuntu1) ... 217s Selecting previously unselected package python3-numpy. 217s Preparing to unpack .../04-python3-numpy_1%3a2.3.5+ds-3_ppc64el.deb ... 217s Unpacking python3-numpy (1:2.3.5+ds-3) ... 218s Selecting previously unselected package coinor-libcoinutils3v5:ppc64el. 218s Preparing to unpack .../05-coinor-libcoinutils3v5_2.11.12+ds-1_ppc64el.deb ... 218s Unpacking coinor-libcoinutils3v5:ppc64el (2.11.12+ds-1) ... 218s Selecting previously unselected package coinor-libosi1v5:ppc64el. 218s Preparing to unpack .../06-coinor-libosi1v5_0.108.11+ds-1_ppc64el.deb ... 218s Unpacking coinor-libosi1v5:ppc64el (0.108.11+ds-1) ... 218s Selecting previously unselected package coinor-libclp1:ppc64el. 218s Preparing to unpack .../07-coinor-libclp1_1.17.10+ds-1build1_ppc64el.deb ... 218s Unpacking coinor-libclp1:ppc64el (1.17.10+ds-1build1) ... 218s Selecting previously unselected package coinor-libcgl1:ppc64el. 218s Preparing to unpack .../08-coinor-libcgl1_0.60.9+ds-1build1_ppc64el.deb ... 218s Unpacking coinor-libcgl1:ppc64el (0.60.9+ds-1build1) ... 218s Selecting previously unselected package coinor-libcbc3.1:ppc64el. 218s Preparing to unpack .../09-coinor-libcbc3.1_2.10.12+ds-1build1_ppc64el.deb ... 218s Unpacking coinor-libcbc3.1:ppc64el (2.10.12+ds-1build1) ... 218s Selecting previously unselected package sgml-base. 218s Preparing to unpack .../10-sgml-base_1.31+nmu1build1_all.deb ... 218s Unpacking sgml-base (1.31+nmu1build1) ... 218s Selecting previously unselected package xml-core. 218s Preparing to unpack .../11-xml-core_0.19build1_all.deb ... 218s Unpacking xml-core (0.19build1) ... 218s Selecting previously unselected package docutils-common. 218s Preparing to unpack .../12-docutils-common_0.22.4+dfsg-1_all.deb ... 218s Unpacking docutils-common (0.22.4+dfsg-1) ... 218s Selecting previously unselected package dwgsim. 218s Preparing to unpack .../13-dwgsim_0.1.14-4build1_ppc64el.deb ... 218s Unpacking dwgsim (0.1.14-4build1) ... 218s Selecting previously unselected package fonts-dejavu-mono. 218s Preparing to unpack .../14-fonts-dejavu-mono_2.37-8build1_all.deb ... 218s Unpacking fonts-dejavu-mono (2.37-8build1) ... 218s Selecting previously unselected package fonts-dejavu-core. 218s Preparing to unpack .../15-fonts-dejavu-core_2.37-8build1_all.deb ... 218s Unpacking fonts-dejavu-core (2.37-8build1) ... 218s Selecting previously unselected package libfontenc1:ppc64el. 218s Preparing to unpack .../16-libfontenc1_1%3a1.1.8-1build2_ppc64el.deb ... 218s Unpacking libfontenc1:ppc64el (1:1.1.8-1build2) ... 218s Selecting previously unselected package x11-common. 218s Preparing to unpack .../17-x11-common_1%3a7.7+24ubuntu1_all.deb ... 218s Unpacking x11-common (1:7.7+24ubuntu1) ... 218s Selecting previously unselected package xfonts-encodings. 218s Preparing to unpack .../18-xfonts-encodings_1%3a1.0.5-0ubuntu3_all.deb ... 218s Unpacking xfonts-encodings (1:1.0.5-0ubuntu3) ... 218s Selecting previously unselected package xfonts-utils. 218s Preparing to unpack .../19-xfonts-utils_1%3a7.7+7build1_ppc64el.deb ... 218s Unpacking xfonts-utils (1:7.7+7build1) ... 218s Selecting previously unselected package fonts-urw-base35. 218s Preparing to unpack .../20-fonts-urw-base35_20200910-8build1_all.deb ... 218s Unpacking fonts-urw-base35 (20200910-8build1) ... 218s Selecting previously unselected package fontconfig-config. 218s Preparing to unpack .../21-fontconfig-config_2.17.1-3ubuntu1_ppc64el.deb ... 218s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 218s Selecting previously unselected package fonts-dejavu-extra. 218s Preparing to unpack .../22-fonts-dejavu-extra_2.37-8build1_all.deb ... 218s Unpacking fonts-dejavu-extra (2.37-8build1) ... 218s Selecting previously unselected package fonts-glyphicons-halflings. 218s Preparing to unpack .../23-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 218s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 218s Selecting previously unselected package liberror-perl. 218s Preparing to unpack .../24-liberror-perl_0.17030-1_all.deb ... 218s Unpacking liberror-perl (0.17030-1) ... 218s Selecting previously unselected package git-man. 218s Preparing to unpack .../25-git-man_1%3a2.51.0-1ubuntu1_all.deb ... 218s Unpacking git-man (1:2.51.0-1ubuntu1) ... 218s Selecting previously unselected package git. 218s Preparing to unpack .../26-git_1%3a2.51.0-1ubuntu1_ppc64el.deb ... 218s Unpacking git (1:2.51.0-1ubuntu1) ... 219s Selecting previously unselected package libfontconfig1:ppc64el. 219s Preparing to unpack .../27-libfontconfig1_2.17.1-3ubuntu1_ppc64el.deb ... 219s Unpacking libfontconfig1:ppc64el (2.17.1-3ubuntu1) ... 219s Selecting previously unselected package libpixman-1-0:ppc64el. 219s Preparing to unpack .../28-libpixman-1-0_0.46.4-1_ppc64el.deb ... 219s Unpacking libpixman-1-0:ppc64el (0.46.4-1) ... 219s Selecting previously unselected package libxcb-render0:ppc64el. 219s Preparing to unpack .../29-libxcb-render0_1.17.0-2ubuntu1_ppc64el.deb ... 219s Unpacking libxcb-render0:ppc64el (1.17.0-2ubuntu1) ... 219s Selecting previously unselected package libxcb-shm0:ppc64el. 219s Preparing to unpack .../30-libxcb-shm0_1.17.0-2ubuntu1_ppc64el.deb ... 219s Unpacking libxcb-shm0:ppc64el (1.17.0-2ubuntu1) ... 219s Selecting previously unselected package libxrender1:ppc64el. 219s Preparing to unpack .../31-libxrender1_1%3a0.9.12-1_ppc64el.deb ... 219s Unpacking libxrender1:ppc64el (1:0.9.12-1) ... 219s Selecting previously unselected package libcairo2:ppc64el. 219s Preparing to unpack .../32-libcairo2_1.18.4-3_ppc64el.deb ... 219s Unpacking libcairo2:ppc64el (1.18.4-3) ... 219s Selecting previously unselected package libdatrie1:ppc64el. 219s Preparing to unpack .../33-libdatrie1_0.2.14-1_ppc64el.deb ... 219s Unpacking libdatrie1:ppc64el (0.2.14-1) ... 219s Selecting previously unselected package libdeflate0:ppc64el. 219s Preparing to unpack .../34-libdeflate0_1.23-2build1_ppc64el.deb ... 219s Unpacking libdeflate0:ppc64el (1.23-2build1) ... 219s Selecting previously unselected package libgomp1:ppc64el. 219s Preparing to unpack .../35-libgomp1_15.2.0-12ubuntu1_ppc64el.deb ... 219s Unpacking libgomp1:ppc64el (15.2.0-12ubuntu1) ... 219s Selecting previously unselected package libgraphite2-3:ppc64el. 219s Preparing to unpack .../36-libgraphite2-3_1.3.14-11ubuntu1_ppc64el.deb ... 219s Unpacking libgraphite2-3:ppc64el (1.3.14-11ubuntu1) ... 219s Selecting previously unselected package libharfbuzz0b:ppc64el. 219s Preparing to unpack .../37-libharfbuzz0b_12.3.2-1_ppc64el.deb ... 219s Unpacking libharfbuzz0b:ppc64el (12.3.2-1) ... 219s Selecting previously unselected package libimagequant0:ppc64el. 219s Preparing to unpack .../38-libimagequant0_2.18.0-1build1_ppc64el.deb ... 219s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 219s Selecting previously unselected package libjpeg-turbo8:ppc64el. 219s Preparing to unpack .../39-libjpeg-turbo8_2.1.5-4ubuntu3_ppc64el.deb ... 219s Unpacking libjpeg-turbo8:ppc64el (2.1.5-4ubuntu3) ... 219s Selecting previously unselected package libjpeg8:ppc64el. 219s Preparing to unpack .../40-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 219s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 219s Selecting previously unselected package libjs-bootstrap. 219s Preparing to unpack .../41-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 219s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 219s Selecting previously unselected package libjs-jquery. 219s Preparing to unpack .../42-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 219s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 219s Selecting previously unselected package liblcms2-2:ppc64el. 219s Preparing to unpack .../43-liblcms2-2_2.17-1_ppc64el.deb ... 219s Unpacking liblcms2-2:ppc64el (2.17-1) ... 219s Selecting previously unselected package liblerc4:ppc64el. 219s Preparing to unpack .../44-liblerc4_4.0.0+ds-5ubuntu2_ppc64el.deb ... 219s Unpacking liblerc4:ppc64el (4.0.0+ds-5ubuntu2) ... 219s Selecting previously unselected package libraqm0:ppc64el. 219s Preparing to unpack .../45-libraqm0_0.10.4-1_ppc64el.deb ... 219s Unpacking libraqm0:ppc64el (0.10.4-1) ... 219s Selecting previously unselected package libsharpyuv0:ppc64el. 219s Preparing to unpack .../46-libsharpyuv0_1.5.0-0.1build1_ppc64el.deb ... 219s Unpacking libsharpyuv0:ppc64el (1.5.0-0.1build1) ... 219s Selecting previously unselected package libjbig0:ppc64el. 219s Preparing to unpack .../47-libjbig0_2.1-6.1ubuntu3_ppc64el.deb ... 219s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu3) ... 219s Selecting previously unselected package libwebp7:ppc64el. 219s Preparing to unpack .../48-libwebp7_1.5.0-0.1build1_ppc64el.deb ... 219s Unpacking libwebp7:ppc64el (1.5.0-0.1build1) ... 219s Selecting previously unselected package libtiff6:ppc64el. 219s Preparing to unpack .../49-libtiff6_4.7.0-3ubuntu3_ppc64el.deb ... 219s Unpacking libtiff6:ppc64el (4.7.0-3ubuntu3) ... 219s Selecting previously unselected package libwebpdemux2:ppc64el. 219s Preparing to unpack .../50-libwebpdemux2_1.5.0-0.1build1_ppc64el.deb ... 219s Unpacking libwebpdemux2:ppc64el (1.5.0-0.1build1) ... 219s Selecting previously unselected package libwebpmux3:ppc64el. 219s Preparing to unpack .../51-libwebpmux3_1.5.0-0.1build1_ppc64el.deb ... 219s Unpacking libwebpmux3:ppc64el (1.5.0-0.1build1) ... 219s Selecting previously unselected package python3-charset-normalizer. 219s Preparing to unpack .../52-python3-charset-normalizer_3.4.4-2_ppc64el.deb ... 219s Unpacking python3-charset-normalizer (3.4.4-2) ... 219s Selecting previously unselected package libopenjp2-7:ppc64el. 219s Preparing to unpack .../53-libopenjp2-7_2.5.4-1_ppc64el.deb ... 219s Unpacking libopenjp2-7:ppc64el (2.5.4-1) ... 219s Selecting previously unselected package python3-pil:ppc64el. 219s Preparing to unpack .../54-python3-pil_12.0.0-1ubuntu1_ppc64el.deb ... 219s Unpacking python3-pil:ppc64el (12.0.0-1ubuntu1) ... 219s Selecting previously unselected package python3-cairo. 219s Preparing to unpack .../55-python3-cairo_1.27.0-2build1_ppc64el.deb ... 219s Unpacking python3-cairo (1.27.0-2build1) ... 219s Selecting previously unselected package python3-freetype. 219s Preparing to unpack .../56-python3-freetype_2.5.1-2_all.deb ... 219s Unpacking python3-freetype (2.5.1-2) ... 219s Selecting previously unselected package python3-rlpycairo. 219s Preparing to unpack .../57-python3-rlpycairo_0.3.0-4_all.deb ... 219s Unpacking python3-rlpycairo (0.3.0-4) ... 219s Selecting previously unselected package python3-reportlab. 219s Preparing to unpack .../58-python3-reportlab_4.4.9-1_all.deb ... 219s Unpacking python3-reportlab (4.4.9-1) ... 219s Selecting previously unselected package w3c-sgml-lib. 219s Preparing to unpack .../59-w3c-sgml-lib_1.3-3build1_all.deb ... 219s Unpacking w3c-sgml-lib (1.3-3build1) ... 219s Selecting previously unselected package python3-biopython. 219s Preparing to unpack .../60-python3-biopython_1.86+dfsg-1_ppc64el.deb ... 219s Unpacking python3-biopython (1.86+dfsg-1) ... 219s Selecting previously unselected package python3-configargparse. 219s Preparing to unpack .../61-python3-configargparse_1.7-2_all.deb ... 219s Unpacking python3-configargparse (1.7-2) ... 219s Selecting previously unselected package python3-connection-pool. 219s Preparing to unpack .../62-python3-connection-pool_0.0.3-2build1_all.deb ... 219s Unpacking python3-connection-pool (0.0.3-2build1) ... 220s Selecting previously unselected package python3-datrie. 220s Preparing to unpack .../63-python3-datrie_0.8.3-2_ppc64el.deb ... 220s Unpacking python3-datrie (0.8.3-2) ... 220s Selecting previously unselected package python3-decorator. 220s Preparing to unpack .../64-python3-decorator_5.2.1-2_all.deb ... 220s Unpacking python3-decorator (5.2.1-2) ... 220s Selecting previously unselected package python3-roman-numerals. 220s Preparing to unpack .../65-python3-roman-numerals_4.1.0-1_all.deb ... 220s Unpacking python3-roman-numerals (4.1.0-1) ... 220s Selecting previously unselected package python3-docutils. 220s Preparing to unpack .../66-python3-docutils_0.22.4+dfsg-1_all.deb ... 220s Unpacking python3-docutils (0.22.4+dfsg-1) ... 220s Selecting previously unselected package python3-dpath. 220s Preparing to unpack .../67-python3-dpath_2.2.0-2_all.deb ... 220s Unpacking python3-dpath (2.2.0-2) ... 220s Selecting previously unselected package python3-fastjsonschema. 220s Preparing to unpack .../68-python3-fastjsonschema_2.21.1-1_all.deb ... 220s Unpacking python3-fastjsonschema (2.21.1-1) ... 220s Selecting previously unselected package python3-smmap. 220s Preparing to unpack .../69-python3-smmap_6.0.0-1build1_all.deb ... 220s Unpacking python3-smmap (6.0.0-1build1) ... 220s Selecting previously unselected package python3-gitdb. 220s Preparing to unpack .../70-python3-gitdb_4.0.12-1_all.deb ... 220s Unpacking python3-gitdb (4.0.12-1) ... 220s Selecting previously unselected package python3-git. 220s Preparing to unpack .../71-python3-git_3.1.46-1_all.deb ... 220s Unpacking python3-git (3.1.46-1) ... 220s Selecting previously unselected package python3-humanfriendly. 220s Preparing to unpack .../72-python3-humanfriendly_10.0-6build1_all.deb ... 220s Unpacking python3-humanfriendly (10.0-6build1) ... 220s Selecting previously unselected package python3-platformdirs. 220s Preparing to unpack .../73-python3-platformdirs_4.5.1-1_all.deb ... 220s Unpacking python3-platformdirs (4.5.1-1) ... 220s Selecting previously unselected package python3-traitlets. 220s Preparing to unpack .../74-python3-traitlets_5.14.3+really5.14.3-2_all.deb ... 220s Unpacking python3-traitlets (5.14.3+really5.14.3-2) ... 220s Selecting previously unselected package python3-jupyter-core. 220s Preparing to unpack .../75-python3-jupyter-core_5.9.1-1_all.deb ... 220s Unpacking python3-jupyter-core (5.9.1-1) ... 220s Selecting previously unselected package python3-nbformat. 220s Preparing to unpack .../76-python3-nbformat_5.10.4-1_all.deb ... 220s Unpacking python3-nbformat (5.10.4-1) ... 220s Selecting previously unselected package python3-pytz. 220s Preparing to unpack .../77-python3-pytz_2025.2-5_all.deb ... 220s Unpacking python3-pytz (2025.2-5) ... 220s Selecting previously unselected package python3-pandas-lib:ppc64el. 220s Preparing to unpack .../78-python3-pandas-lib_2.3.3+dfsg-3_ppc64el.deb ... 220s Unpacking python3-pandas-lib:ppc64el (2.3.3+dfsg-3) ... 220s Selecting previously unselected package python3-pandas. 220s Preparing to unpack .../79-python3-pandas_2.3.3+dfsg-3_all.deb ... 220s Unpacking python3-pandas (2.3.3+dfsg-3) ... 220s Selecting previously unselected package python3-plac. 220s Preparing to unpack .../80-python3-plac_1.4.3-2_all.deb ... 220s Unpacking python3-plac (1.4.3-2) ... 220s Selecting previously unselected package python3-psutil. 220s Preparing to unpack .../81-python3-psutil_7.1.0-1ubuntu1_ppc64el.deb ... 220s Unpacking python3-psutil (7.1.0-1ubuntu1) ... 220s Selecting previously unselected package coinor-cbc. 220s Preparing to unpack .../82-coinor-cbc_2.10.12+ds-1build1_ppc64el.deb ... 220s Unpacking coinor-cbc (2.10.12+ds-1build1) ... 220s Selecting previously unselected package python3-pulp. 220s Preparing to unpack .../83-python3-pulp_2.7.0+dfsg-4_all.deb ... 220s Unpacking python3-pulp (2.7.0+dfsg-4) ... 220s Selecting previously unselected package python3-retry. 220s Preparing to unpack .../84-python3-retry_0.9.2-5_all.deb ... 220s Unpacking python3-retry (0.9.2-5) ... 220s Selecting previously unselected package python3-wrapt. 220s Preparing to unpack .../85-python3-wrapt_1.17.3-3_ppc64el.deb ... 220s Unpacking python3-wrapt (1.17.3-3) ... 220s Selecting previously unselected package python3-smart-open. 220s Preparing to unpack .../86-python3-smart-open_7.5.0-1_all.deb ... 220s Unpacking python3-smart-open (7.5.0-1) ... 220s Selecting previously unselected package python3-stopit. 220s Preparing to unpack .../87-python3-stopit_1.1.2-4_all.deb ... 220s Unpacking python3-stopit (1.1.2-4) ... 220s Selecting previously unselected package python3-tabulate. 220s Preparing to unpack .../88-python3-tabulate_0.9.0-1build1_all.deb ... 220s Unpacking python3-tabulate (0.9.0-1build1) ... 220s Selecting previously unselected package python3-throttler. 220s Preparing to unpack .../89-python3-throttler_1.2.2-4ubuntu1_all.deb ... 220s Unpacking python3-throttler (1.2.2-4ubuntu1) ... 221s Selecting previously unselected package python3-toposort. 221s Preparing to unpack .../90-python3-toposort_1.10-2build1_all.deb ... 221s Unpacking python3-toposort (1.10-2build1) ... 221s Selecting previously unselected package python3-yte. 221s Preparing to unpack .../91-python3-yte_1.5.4-1build1_all.deb ... 221s Unpacking python3-yte (1.5.4-1build1) ... 221s Selecting previously unselected package snakemake. 221s Preparing to unpack .../92-snakemake_7.32.4-8.1_all.deb ... 221s Unpacking snakemake (7.32.4-8.1) ... 221s Setting up python3-toposort (1.10-2build1) ... 221s Setting up libgraphite2-3:ppc64el (1.3.14-11ubuntu1) ... 221s Setting up python3-configargparse (1.7-2) ... 221s Setting up liblcms2-2:ppc64el (2.17-1) ... 221s Setting up libpixman-1-0:ppc64el (0.46.4-1) ... 221s Setting up libsharpyuv0:ppc64el (1.5.0-0.1build1) ... 221s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu2) ... 221s Setting up libxrender1:ppc64el (1:0.9.12-1) ... 221s Setting up libdatrie1:ppc64el (0.2.14-1) ... 221s Setting up libxcb-render0:ppc64el (1.17.0-2ubuntu1) ... 221s Setting up python3-charset-normalizer (3.4.4-2) ... 221s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 221s Setting up x11-common (1:7.7+24ubuntu1) ... 221s Setting up libdeflate0:ppc64el (1.23-2build1) ... 221s Setting up python3-tabulate (0.9.0-1build1) ... 221s Setting up python3-pytz (2025.2-5) ... 221s Setting up libxcb-shm0:ppc64el (1.17.0-2ubuntu1) ... 221s Setting up libgomp1:ppc64el (15.2.0-12ubuntu1) ... 221s Setting up python3-freetype (2.5.1-2) ... 222s Setting up libjbig0:ppc64el (2.1-6.1ubuntu3) ... 222s Setting up python3-plac (1.4.3-2) ... 222s Setting up python3-platformdirs (4.5.1-1) ... 222s Setting up python3-psutil (7.1.0-1ubuntu1) ... 222s Setting up liberror-perl (0.17030-1) ... 222s Setting up python3-decorator (5.2.1-2) ... 222s Setting up libfontenc1:ppc64el (1:1.1.8-1build2) ... 222s Setting up libblas3:ppc64el (3.12.1-7ubuntu1) ... 222s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 222s Setting up python3-humanfriendly (10.0-6build1) ... 222s Setting up xfonts-encodings (1:1.0.5-0ubuntu3) ... 222s Setting up python3-dpath (2.2.0-2) ... 222s Setting up python3-connection-pool (0.0.3-2build1) ... 222s Setting up libimagequant0:ppc64el (2.18.0-1build1) ... 222s Setting up fonts-dejavu-mono (2.37-8build1) ... 222s Setting up python3-numpy-dev:ppc64el (1:2.3.5+ds-3) ... 222s Setting up python3-wrapt (1.17.3-3) ... 223s Setting up python3-throttler (1.2.2-4ubuntu1) ... 223s Setting up dwgsim (0.1.14-4build1) ... 223s Setting up fonts-dejavu-core (2.37-8build1) ... 223s Setting up python3-retry (0.9.2-5) ... 223s Setting up libjpeg-turbo8:ppc64el (2.1.5-4ubuntu3) ... 223s Setting up libgfortran5:ppc64el (15.2.0-12ubuntu1) ... 223s Setting up libwebp7:ppc64el (1.5.0-0.1build1) ... 223s Setting up python3-fastjsonschema (2.21.1-1) ... 223s Setting up fonts-dejavu-extra (2.37-8build1) ... 223s Setting up python3-stopit (1.1.2-4) ... 223s Setting up python3-traitlets (5.14.3+really5.14.3-2) ... 223s Setting up python3-roman-numerals (4.1.0-1) ... 223s Setting up libopenjp2-7:ppc64el (2.5.4-1) ... 223s Setting up git-man (1:2.51.0-1ubuntu1) ... 223s Setting up libharfbuzz0b:ppc64el (12.3.2-1) ... 223s Setting up sgml-base (1.31+nmu1build1) ... 223s Setting up python3-datrie (0.8.3-2) ... 223s Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 223s Setting up libwebpmux3:ppc64el (1.5.0-0.1build1) ... 223s Setting up python3-smmap (6.0.0-1build1) ... 223s Setting up python3-jupyter-core (5.9.1-1) ... 223s Setting up libjs-bootstrap (3.4.1+dfsg-6) ... 223s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 223s Setting up liblapack3:ppc64el (3.12.1-7ubuntu1) ... 223s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 223s Setting up python3-smart-open (7.5.0-1) ... 224s Setting up fontconfig-config (2.17.1-3ubuntu1) ... 224s Setting up libwebpdemux2:ppc64el (1.5.0-0.1build1) ... 224s Setting up python3-nbformat (5.10.4-1) ... 224s Setting up python3-gitdb (4.0.12-1) ... 224s Setting up xfonts-utils (1:7.7+7build1) ... 224s Setting up python3-yte (1.5.4-1build1) ... 224s Setting up coinor-libcoinutils3v5:ppc64el (2.11.12+ds-1) ... 224s Setting up libraqm0:ppc64el (0.10.4-1) ... 224s Setting up git (1:2.51.0-1ubuntu1) ... 224s Setting up python3-numpy (1:2.3.5+ds-3) ... 226s Setting up coinor-libosi1v5:ppc64el (0.108.11+ds-1) ... 226s Setting up libtiff6:ppc64el (4.7.0-3ubuntu3) ... 226s Setting up xml-core (0.19build1) ... 226s Setting up libfontconfig1:ppc64el (2.17.1-3ubuntu1) ... 226s Setting up python3-pandas-lib:ppc64el (2.3.3+dfsg-3) ... 226s Setting up fonts-urw-base35 (20200910-8build1) ... 226s Setting up libcairo2:ppc64el (1.18.4-3) ... 226s Setting up python3-pil:ppc64el (12.0.0-1ubuntu1) ... 227s Setting up python3-pandas (2.3.3+dfsg-3) ... 231s Setting up coinor-libclp1:ppc64el (1.17.10+ds-1build1) ... 231s Setting up python3-git (3.1.46-1) ... 231s Setting up coinor-libcgl1:ppc64el (0.60.9+ds-1build1) ... 231s Setting up python3-cairo (1.27.0-2build1) ... 231s Setting up python3-rlpycairo (0.3.0-4) ... 232s Setting up coinor-libcbc3.1:ppc64el (2.10.12+ds-1build1) ... 232s Setting up python3-reportlab (4.4.9-1) ... 232s Setting up coinor-cbc (2.10.12+ds-1build1) ... 232s Setting up python3-pulp (2.7.0+dfsg-4) ... 232s /usr/lib/python3/dist-packages/pulp/apis/xpress_api.py:325: SyntaxWarning: invalid escape sequence '\ ' 232s otherwise be interpreted by the Tcl shell: \ $ " [ 232s Processing triggers for libc-bin (2.42-2ubuntu4) ... 232s Processing triggers for man-db (2.13.1-1build1) ... 233s Processing triggers for sgml-base (1.31+nmu1build1) ... 233s Setting up w3c-sgml-lib (1.3-3build1) ... 262s Setting up docutils-common (0.22.4+dfsg-1) ... 262s Setting up python3-biopython (1.86+dfsg-1) ... 263s Processing triggers for sgml-base (1.31+nmu1build1) ... 263s Setting up python3-docutils (0.22.4+dfsg-1) ... 263s Setting up snakemake (7.32.4-8.1) ... 264s autopkgtest [22:59:23]: test run-unit-test: [----------------------- 264s Running simulators... 264s Prepended http:// to '' 264s http://: Invalid host name. 264s --2026-02-09 22:59:23-- https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/845/GCF_000005845.2_ASM584v2/GCF_000005845.2_ASM584v2_genomic.fna.gz 264s Resolving egress.ps7.internal (egress.ps7.internal)... 10.151.41.6, 10.151.41.7, 10.151.41.5 264s Connecting to egress.ps7.internal (egress.ps7.internal)|10.151.41.6|:3128... connected. 265s Proxy request sent, awaiting response... 200 OK 265s Length: 1379902 (1.3M) [application/x-gzip] 265s Saving to: ‘data/GCF_000005845.2_ASM584v2_genomic.fna.gz’ 265s 266s 0K .......... .......... .......... .......... .......... 3% 241K 5s 266s 50K .......... .......... .......... .......... .......... 7% 474K 4s 266s 100K .......... .......... .......... .......... .......... 11% 488K 3s 266s 150K .......... .......... .......... .......... .......... 14% 106M 2s 266s 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in 0.9s (1.41 MB/s) 266s [dwgsim_core] NC_000913.3 length: 4641652 266s [dwgsim_core] 1 sequences, total length: 4641652 266s [dwgsim_core] Currently on: 267s 0 [dwgsim_core] 0 [dwgsim_core] 1000 267s [dwgsim_core] Complete! 267s Cleanup simulated data... 268s Command 'QCumber encountered an error' returned non-zero exit status 1. 268s Running simulators... 268s Cleanup simulated data... 268s FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmpx10bj0ld/testData42dwgsim-e-coli4cd473993fb5297c262806b154139fd517216272/testData42dwgsim-e-coli4cd473993fb5297c262806b154139fd517216272_S1_L001_R2_001.fastq' 268s FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmpx10bj0ld/testData42dwgsim-e-colica1f17628ed45b58a10b74a9fe7d8023079a1856/testData42dwgsim-e-colica1f17628ed45b58a10b74a9fe7d8023079a1856_S1_L001_R2_001.fastq' 268s Command 'QCumber encountered an error' returned non-zero exit status 1. 268s Running simulators... 268s [dwgsim_core] NC_000913.3 length: 4641652 268s [dwgsim_core] 1 sequences, total length: 4641652 268s [dwgsim_core] Currently on: 289s 0 [dwgsim_core] 0 [dwgsim_core] 10000 [dwgsim_core] 20000 [dwgsim_core] 30000 [dwgsim_core] 40000 [dwgsim_core] 50000 [dwgsim_core] 60000 [dwgsim_core] 70000 [dwgsim_core] 80000 [dwgsim_core] 90000 [dwgsim_core] 100000 289s [dwgsim_core] Complete! 289s Cleanup simulated data... 290s UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte 290s Command 'QCumber encountered an error' returned non-zero exit status 1. 290s wget -Pdata https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/845/GCF_000005845.2_ASM584v2/GCF_000005845.2_ASM584v2_genomic.fna.gz 290s 290s Run Qcumber: testData42dwgsim-e-coli4cd473993fb5297c262806b154139fd517216272 290s ../QCumber-2 -i/tmp/tmpx10bj0ld/testData42dwgsim-e-coli4cd473993fb5297c262806b154139fd517216272 -t2 -K -otestData42dwgsim-e-coli4cd473993fb5297c262806b154139fd517216272 290s 290s Run Qcumber: testData42dwgsim-e-colica1f17628ed45b58a10b74a9fe7d8023079a1856 290s ../QCumber-2 -i/tmp/tmpx10bj0ld/testData42dwgsim-e-colica1f17628ed45b58a10b74a9fe7d8023079a1856 -t2 -K --trimBetter mapping -otestData42dwgsim-e-colica1f17628ed45b58a10b74a9fe7d8023079a1856 290s 290s Run Qcumber: testData42dwgsim-e-colidd57828f1167d5db3d40ca2590a921efd93d508c 290s ../QCumber-2 -i/tmp/tmpx10bj0ld/testData42dwgsim-e-colidd57828f1167d5db3d40ca2590a921efd93d508c -t4 -K -S -otestData42dwgsim-e-colidd57828f1167d5db3d40ca2590a921efd93d508c -rdata/GCF_000005845.2_ASM584v2_genomic.fna.gz 290s autopkgtest [22:59:49]: test run-unit-test: -----------------------] 290s autopkgtest [22:59:49]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 290s run-unit-test PASS 291s autopkgtest [22:59:50]: @@@@@@@@@@@@@@@@@@@@ summary 291s run-unit-test PASS