0s autopkgtest [11:51:38]: starting date and time: 2025-11-17 11:51:38+0000 0s autopkgtest [11:51:38]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [11:51:38]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.r8e5ub72/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:requests,src:python3-defaults --apt-upgrade python-skbio --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=requests/2.32.5+dfsg-1ubuntu1 python3-defaults/3.13.7-2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-ppc64el-5.secgroup --name adt-resolute-ppc64el-python-skbio-20251117-115138-juju-7f2275-prod-proposed-migration-environment-20-7cfcabd4-dfd4-4a1a-98a6-8b28e1ca4a8b --image adt/ubuntu-resolute-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-ppc64el-python-skbio-20251117-115138-juju-7f2275-prod-proposed-migration-environment-20-7cfcabd4-dfd4-4a1a-98a6-8b28e1ca4a8b from image adt/ubuntu-resolute-ppc64el-server-20251117.img (UUID c6f5b741-c77a-45db-84cb-f00b40e77676)... 49s autopkgtest [11:52:27]: testbed dpkg architecture: ppc64el 49s autopkgtest [11:52:27]: testbed apt version: 3.1.11 49s autopkgtest [11:52:27]: @@@@@@@@@@@@@@@@@@@@ test bed setup 49s autopkgtest [11:52:27]: testbed release detected to be: None 50s autopkgtest [11:52:28]: updating testbed package index (apt update) 51s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 51s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 51s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 51s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 51s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.9 kB] 51s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 51s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [868 kB] 51s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [81.1 kB] 51s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el Packages [140 kB] 51s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted ppc64el Packages [940 B] 51s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el Packages [562 kB] 52s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse ppc64el Packages [11.0 kB] 52s Fetched 1784 kB in 1s (1355 kB/s) 52s Reading package lists... 53s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 53s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 53s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 53s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 54s Reading package lists... 54s Reading package lists... 55s Building dependency tree... 55s Reading state information... 55s Calculating upgrade... 55s The following packages will be upgraded: 55s libpython3-stdlib python3 python3-minimal python3-requests usbutils 55s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 55s Need to get 207 kB of archives. 55s After this operation, 1024 B of additional disk space will be used. 55s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-minimal ppc64el 3.13.7-2 [27.8 kB] 55s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3 ppc64el 3.13.7-2 [23.9 kB] 55s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libpython3-stdlib ppc64el 3.13.7-2 [10.6 kB] 55s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el usbutils ppc64el 1:019-1 [91.5 kB] 55s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-requests all 2.32.5+dfsg-1ubuntu1 [53.1 kB] 55s dpkg-preconfigure: unable to re-open stdin: No such file or directory 56s Fetched 207 kB in 1s (400 kB/s) 56s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81022 files and directories currently installed.) 56s Preparing to unpack .../python3-minimal_3.13.7-2_ppc64el.deb ... 56s Unpacking python3-minimal (3.13.7-2) over (3.13.7-1) ... 56s Setting up python3-minimal (3.13.7-2) ... 56s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81022 files and directories currently installed.) 56s Preparing to unpack .../python3_3.13.7-2_ppc64el.deb ... 56s running python pre-rtupdate hooks for python3.13... 56s Unpacking python3 (3.13.7-2) over (3.13.7-1) ... 56s Preparing to unpack .../libpython3-stdlib_3.13.7-2_ppc64el.deb ... 56s Unpacking libpython3-stdlib:ppc64el (3.13.7-2) over (3.13.7-1) ... 56s Preparing to unpack .../usbutils_1%3a019-1_ppc64el.deb ... 56s Unpacking usbutils (1:019-1) over (1:018-2) ... 56s Preparing to unpack .../python3-requests_2.32.5+dfsg-1ubuntu1_all.deb ... 56s Unpacking python3-requests (2.32.5+dfsg-1ubuntu1) over (2.32.3+dfsg-5ubuntu2) ... 56s Setting up usbutils (1:019-1) ... 56s Setting up libpython3-stdlib:ppc64el (3.13.7-2) ... 56s Setting up python3 (3.13.7-2) ... 56s running python rtupdate hooks for python3.13... 56s running python post-rtupdate hooks for python3.13... 56s Setting up python3-requests (2.32.5+dfsg-1ubuntu1) ... 56s Processing triggers for man-db (2.13.1-1) ... 58s autopkgtest [11:52:36]: upgrading testbed (apt dist-upgrade and autopurge) 58s Reading package lists... 58s Building dependency tree... 58s Reading state information... 58s Calculating upgrade... 58s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 58s Reading package lists... 59s Building dependency tree... 59s Reading state information... 59s Solving dependencies... 59s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 62s autopkgtest [11:52:40]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:02:41 UTC 2025 62s autopkgtest [11:52:40]: @@@@@@@@@@@@@@@@@@@@ apt-source python-skbio 64s Get:1 http://ftpmaster.internal/ubuntu resolute/universe python-skbio 0.6.2-4build2 (dsc) [2921 B] 64s Get:2 http://ftpmaster.internal/ubuntu resolute/universe python-skbio 0.6.2-4build2 (tar) [2204 kB] 64s Get:3 http://ftpmaster.internal/ubuntu resolute/universe python-skbio 0.6.2-4build2 (diff) [12.0 kB] 65s gpgv: Signature made Tue Mar 4 14:51:35 2025 UTC 65s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 65s gpgv: Can't check signature: No public key 65s dpkg-source: warning: cannot verify inline signature for ./python-skbio_0.6.2-4build2.dsc: no acceptable signature found 65s autopkgtest [11:52:43]: testing package python-skbio version 0.6.2-4build2 65s autopkgtest [11:52:43]: build not needed 75s autopkgtest [11:52:53]: test pybuild-autopkgtest: preparing testbed 75s Reading package lists... 76s Building dependency tree... 76s Reading state information... 76s Solving dependencies... 76s The following NEW packages will be installed: 76s architecture-properties autoconf automake autopoint autotools-dev blt 76s build-essential cpp cpp-15 cpp-15-powerpc64le-linux-gnu 76s cpp-powerpc64le-linux-gnu cython3 debhelper debugedit dh-autoreconf 76s dh-python dh-strip-nondeterminism docutils-common dwz fontconfig-config 76s fonts-dejavu-core fonts-dejavu-mono fonts-lyx fonts-mathjax fonts-open-sans 76s g++ g++-15 g++-15-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-15 76s gcc-15-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gettext 76s intltool-debian libaec0 libarchive-zip-perl libasan8 libblas3 libcc1-0 76s libdebhelper-perl libdeflate0 libexpat1-dev libfile-stripnondeterminism-perl 76s libfontconfig1 libgcc-15-dev libgfortran5 libgomp1 libgraphite2-3 76s libharfbuzz0b libhdf5-310 libhdf5-hl-310 libimagequant0 libisl23 libitm1 76s libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-mathjax libjs-sphinxdoc 76s libjs-underscore libjson-perl liblapack3 liblcms2-2 liblerc4 liblsan0 76s liblzf1 libmpc3 libopenjp2-7 libpython3-all-dev libpython3-dev 76s libpython3.13-dev libpython3.14 libpython3.14-dev libpython3.14-minimal 76s libpython3.14-stdlib libqhull-r8.0 libquadmath0 libraqm0 libsharpyuv0 76s libsimde-dev libssw-dev libssw0 libstdc++-15-dev libsz2 libtcl8.6 libtiff6 76s libtk8.6 libtool libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 76s libxft2 libxrender1 libxslt1.1 libxss1 libzopfli1 m4 76s node-fortawesome-fontawesome-free po-debconf pybuild-plugin-autopkgtest 76s python-biom-format-doc python-matplotlib-data python-numpy-doc 76s python-pandas-doc python-scipy-doc python-skbio-doc 76s python3-accessible-pygments python3-alabaster python3-all python3-all-dev 76s python3-asttokens python3-biom-format python3-brotli python3-bs4 76s python3-cachecontrol python3-click python3-contourpy python3-cycler 76s python3-decorator python3-defusedxml python3-dev python3-doc 76s python3-docutils python3-executing python3-fonttools python3-fs python3-h5py 76s python3-h5py-serial python3-hdmedians python3-imagesize python3-iniconfig 76s python3-ipython python3-jedi python3-joblib python3-kiwisolver python3-lxml 76s python3-lz4 python3-matplotlib python3-matplotlib-inline python3-mpmath 76s python3-msgpack python3-natsort python3-numpy python3-numpy-dev 76s python3-numpydoc python3-pandas python3-pandas-lib python3-parso 76s python3-patsy python3-pil python3-pil.imagetk python3-platformdirs 76s python3-pluggy python3-prompt-toolkit python3-pure-eval 76s python3-pydata-sphinx-theme python3-pytest python3-pytz python3-roman 76s python3-scipy python3-skbio python3-sklearn python3-sklearn-lib 76s python3-snowballstemmer python3-soupsieve python3-sphinx 76s python3-sphinx-copybutton python3-sphinx-design python3-stack-data 76s python3-statsmodels python3-statsmodels-lib python3-sympy 76s python3-threadpoolctl python3-tk python3-traitlets python3-typeshed 76s python3-ufolib2 python3-wcwidth python3-zopfli python3.13-dev python3.13-doc 76s python3.13-tk python3.14 python3.14-dev python3.14-minimal python3.14-tk 76s sgml-base sphinx-common tk8.6-blt2.5 unicode-data x11-common xml-core 76s zlib1g-dev 76s 0 upgraded, 197 newly installed, 0 to remove and 0 not upgraded. 76s Need to get 262 MB of archives. 76s After this operation, 1540 MB of additional disk space will be used. 76s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy-dev ppc64el 1:2.2.4+ds-1ubuntu1 [153 kB] 76s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el libblas3 ppc64el 3.12.1-7 [291 kB] 77s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgfortran5 ppc64el 15.2.0-7ubuntu1 [620 kB] 77s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblapack3 ppc64el 3.12.1-7 [2960 kB] 77s Get:5 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy ppc64el 1:2.2.4+ds-1ubuntu1 [4887 kB] 78s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpython3.14-minimal ppc64el 3.14.0-4 [908 kB] 78s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.14-minimal ppc64el 3.14.0-4 [2705 kB] 78s Get:8 http://ftpmaster.internal/ubuntu resolute/universe ppc64el architecture-properties ppc64el 0.2.6 [2208 B] 78s Get:9 http://ftpmaster.internal/ubuntu resolute/main ppc64el m4 ppc64el 1.4.20-2 [236 kB] 78s Get:10 http://ftpmaster.internal/ubuntu resolute/main ppc64el autoconf all 2.72-3.1ubuntu1 [384 kB] 78s Get:11 http://ftpmaster.internal/ubuntu resolute/main ppc64el autotools-dev all 20240727.1 [43.4 kB] 78s Get:12 http://ftpmaster.internal/ubuntu resolute/main ppc64el automake all 1:1.18.1-2 [581 kB] 79s Get:13 http://ftpmaster.internal/ubuntu resolute/main ppc64el autopoint all 0.23.2-1 [620 kB] 79s Get:14 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtcl8.6 ppc64el 8.6.17+dfsg-1 [1239 kB] 79s Get:15 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 79s Get:16 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 79s Get:17 http://ftpmaster.internal/ubuntu resolute/main ppc64el fontconfig-config ppc64el 2.15.0-2.3ubuntu1 [38.1 kB] 79s Get:18 http://ftpmaster.internal/ubuntu resolute/main ppc64el libfontconfig1 ppc64el 2.15.0-2.3ubuntu1 [188 kB] 79s Get:19 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxrender1 ppc64el 1:0.9.12-1 [23.0 kB] 79s Get:20 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB] 79s Get:21 http://ftpmaster.internal/ubuntu resolute/main ppc64el x11-common all 1:7.7+24ubuntu1 [22.4 kB] 79s Get:22 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B] 79s Get:23 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtk8.6 ppc64el 8.6.17-1 [968 kB] 79s Get:24 http://ftpmaster.internal/ubuntu resolute/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-8 [778 kB] 79s Get:25 http://ftpmaster.internal/ubuntu resolute/main ppc64el blt ppc64el 2.5.3+dfsg-8 [4830 B] 79s Get:26 http://ftpmaster.internal/ubuntu resolute/main ppc64el libisl23 ppc64el 0.27-1 [882 kB] 79s Get:27 http://ftpmaster.internal/ubuntu resolute/main ppc64el libmpc3 ppc64el 1.3.1-2 [62.5 kB] 79s Get:28 http://ftpmaster.internal/ubuntu resolute/main ppc64el cpp-15-powerpc64le-linux-gnu ppc64el 15.2.0-7ubuntu1 [11.4 MB] 79s Get:29 http://ftpmaster.internal/ubuntu resolute/main ppc64el cpp-15 ppc64el 15.2.0-7ubuntu1 [1032 B] 79s Get:30 http://ftpmaster.internal/ubuntu resolute/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:15.2.0-4ubuntu1 [5746 B] 79s Get:31 http://ftpmaster.internal/ubuntu resolute/main ppc64el cpp ppc64el 4:15.2.0-4ubuntu1 [22.4 kB] 79s Get:32 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcc1-0 ppc64el 15.2.0-7ubuntu1 [49.0 kB] 79s Get:33 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgomp1 ppc64el 15.2.0-7ubuntu1 [169 kB] 79s Get:34 http://ftpmaster.internal/ubuntu resolute/main ppc64el libitm1 ppc64el 15.2.0-7ubuntu1 [32.3 kB] 79s Get:35 http://ftpmaster.internal/ubuntu resolute/main ppc64el libasan8 ppc64el 15.2.0-7ubuntu1 [3006 kB] 80s Get:36 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblsan0 ppc64el 15.2.0-7ubuntu1 [1374 kB] 80s Get:37 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtsan2 ppc64el 15.2.0-7ubuntu1 [2728 kB] 80s Get:38 http://ftpmaster.internal/ubuntu resolute/main ppc64el libubsan1 ppc64el 15.2.0-7ubuntu1 [1231 kB] 80s Get:39 http://ftpmaster.internal/ubuntu resolute/main ppc64el libquadmath0 ppc64el 15.2.0-7ubuntu1 [160 kB] 80s Get:40 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgcc-15-dev ppc64el 15.2.0-7ubuntu1 [1670 kB] 80s Get:41 http://ftpmaster.internal/ubuntu resolute/main ppc64el gcc-15-powerpc64le-linux-gnu ppc64el 15.2.0-7ubuntu1 [22.4 MB] 80s Get:42 http://ftpmaster.internal/ubuntu resolute/main ppc64el gcc-15 ppc64el 15.2.0-7ubuntu1 [524 kB] 80s Get:43 http://ftpmaster.internal/ubuntu resolute/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:15.2.0-4ubuntu1 [1220 B] 80s Get:44 http://ftpmaster.internal/ubuntu resolute/main ppc64el gcc ppc64el 4:15.2.0-4ubuntu1 [5032 B] 80s Get:45 http://ftpmaster.internal/ubuntu resolute/main ppc64el libstdc++-15-dev ppc64el 15.2.0-7ubuntu1 [2744 kB] 81s Get:46 http://ftpmaster.internal/ubuntu resolute/main ppc64el g++-15-powerpc64le-linux-gnu ppc64el 15.2.0-7ubuntu1 [13.0 MB] 81s Get:47 http://ftpmaster.internal/ubuntu resolute/main ppc64el g++-15 ppc64el 15.2.0-7ubuntu1 [23.7 kB] 81s Get:48 http://ftpmaster.internal/ubuntu resolute/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:15.2.0-4ubuntu1 [970 B] 81s Get:49 http://ftpmaster.internal/ubuntu resolute/main ppc64el g++ ppc64el 4:15.2.0-4ubuntu1 [1092 B] 81s Get:50 http://ftpmaster.internal/ubuntu resolute/main ppc64el build-essential ppc64el 12.12ubuntu1 [5094 B] 81s Get:51 http://ftpmaster.internal/ubuntu resolute/universe ppc64el cython3 ppc64el 3.1.6+dfsg-1ubuntu1 [3539 kB] 81s Get:52 http://ftpmaster.internal/ubuntu resolute/main ppc64el libdebhelper-perl all 13.24.2ubuntu1 [95.7 kB] 81s Get:53 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtool all 2.5.4-7 [169 kB] 81s Get:54 http://ftpmaster.internal/ubuntu resolute/main ppc64el dh-autoreconf all 21 [12.5 kB] 81s Get:55 http://ftpmaster.internal/ubuntu resolute/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] 81s Get:56 http://ftpmaster.internal/ubuntu resolute/main ppc64el libfile-stripnondeterminism-perl all 1.15.0-1 [20.5 kB] 81s Get:57 http://ftpmaster.internal/ubuntu resolute/main ppc64el dh-strip-nondeterminism all 1.15.0-1 [5090 B] 81s Get:58 http://ftpmaster.internal/ubuntu resolute/main ppc64el debugedit ppc64el 1:5.2-3 [57.3 kB] 81s Get:59 http://ftpmaster.internal/ubuntu resolute/main ppc64el dwz ppc64el 0.16-2 [142 kB] 81s Get:60 http://ftpmaster.internal/ubuntu resolute/main ppc64el gettext ppc64el 0.23.2-1 [1177 kB] 81s Get:61 http://ftpmaster.internal/ubuntu resolute/main ppc64el intltool-debian all 0.35.0+20060710.6 [23.2 kB] 81s Get:62 http://ftpmaster.internal/ubuntu resolute/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB] 81s Get:63 http://ftpmaster.internal/ubuntu resolute/main ppc64el debhelper all 13.24.2ubuntu1 [896 kB] 81s Get:64 http://ftpmaster.internal/ubuntu resolute/universe ppc64el dh-python all 6.20250414 [119 kB] 81s Get:65 http://ftpmaster.internal/ubuntu resolute/main ppc64el sgml-base all 1.31+nmu1 [11.0 kB] 81s Get:66 http://ftpmaster.internal/ubuntu resolute/main ppc64el xml-core all 0.19 [20.3 kB] 81s Get:67 http://ftpmaster.internal/ubuntu resolute/main ppc64el docutils-common all 0.21.2+dfsg-2 [131 kB] 81s Get:68 http://ftpmaster.internal/ubuntu resolute/universe ppc64el fonts-lyx all 2.4.4-2 [171 kB] 81s Get:69 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 81s Get:70 http://ftpmaster.internal/ubuntu resolute/universe ppc64el fonts-open-sans all 1.11-2 [635 kB] 81s Get:71 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libaec0 ppc64el 1.1.4-2 [30.3 kB] 81s Get:72 http://ftpmaster.internal/ubuntu resolute/main ppc64el libdeflate0 ppc64el 1.23-2 [63.3 kB] 81s Get:73 http://ftpmaster.internal/ubuntu resolute/main ppc64el libexpat1-dev ppc64el 2.7.3-1 [155 kB] 81s Get:74 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 81s Get:75 http://ftpmaster.internal/ubuntu resolute/main ppc64el libharfbuzz0b ppc64el 12.1.0-1 [679 kB] 81s Get:76 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libsz2 ppc64el 1.1.4-2 [5646 B] 81s Get:77 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libhdf5-310 ppc64el 1.14.5+repack-4 [1543 kB] 81s Get:78 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libhdf5-hl-310 ppc64el 1.14.5+repack-4 [76.2 kB] 81s Get:79 http://ftpmaster.internal/ubuntu resolute/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 81s Get:80 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-4ubuntu2 [215 kB] 81s Get:81 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 81s Get:82 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 81s Get:83 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 81s Get:84 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjs-sphinxdoc all 8.2.3-1ubuntu2 [28.0 kB] 81s Get:85 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjson-perl all 4.10000-1 [81.9 kB] 81s Get:86 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblcms2-2 ppc64el 2.17-1 [246 kB] 81s Get:87 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu1 [298 kB] 81s Get:88 http://ftpmaster.internal/ubuntu resolute/universe ppc64el liblzf1 ppc64el 3.6-4 [7920 B] 81s Get:89 http://ftpmaster.internal/ubuntu resolute/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg+really1.3.1-1ubuntu2 [903 kB] 82s Get:90 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpython3.13-dev ppc64el 3.13.9-1 [6416 kB] 82s Get:91 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libpython3-dev ppc64el 3.13.7-2 [10.8 kB] 82s Get:92 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpython3.14-stdlib ppc64el 3.14.0-4 [2446 kB] 82s Get:93 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpython3.14 ppc64el 3.14.0-4 [2725 kB] 82s Get:94 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpython3.14-dev ppc64el 3.14.0-4 [6404 kB] 82s Get:95 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libpython3-all-dev ppc64el 3.13.7-2 [916 B] 82s Get:96 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libqhull-r8.0 ppc64el 2020.2-7 [227 kB] 82s Get:97 http://ftpmaster.internal/ubuntu resolute/main ppc64el libraqm0 ppc64el 0.10.3-1 [19.6 kB] 82s Get:98 http://ftpmaster.internal/ubuntu resolute/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1 [22.3 kB] 82s Get:99 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libsimde-dev all 0.8.2-3 [469 kB] 82s Get:100 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libssw0 ppc64el 1.1-15 [24.2 kB] 82s Get:101 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libssw-dev ppc64el 1.1-15 [26.2 kB] 82s Get:102 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB] 82s Get:103 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebp7 ppc64el 1.5.0-0.1 [315 kB] 83s Get:104 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtiff6 ppc64el 4.7.0-3ubuntu3 [307 kB] 83s Get:105 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebpdemux2 ppc64el 1.5.0-0.1 [14.6 kB] 83s Get:106 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebpmux3 ppc64el 1.5.0-0.1 [31.1 kB] 83s Get:107 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxslt1.1 ppc64el 1.1.43-0.3 [190 kB] 83s Get:108 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libzopfli1 ppc64el 1.0.3-3 [160 kB] 83s Get:109 http://ftpmaster.internal/ubuntu resolute/universe ppc64el node-fortawesome-fontawesome-free all 6.7.2+ds1-1 [1653 kB] 83s Get:110 http://ftpmaster.internal/ubuntu resolute/universe ppc64el pybuild-plugin-autopkgtest all 6.20250414 [1746 B] 83s Get:111 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python-biom-format-doc all 2.1.16-1build3 [57.5 kB] 83s Get:112 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 83s Get:113 http://ftpmaster.internal/ubuntu resolute/main ppc64el python-numpy-doc all 1:2.2.4+ds-1ubuntu1 [5769 kB] 83s Get:114 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 84s Get:115 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python-pandas-doc all 2.3.3+dfsg-1ubuntu1 [14.1 MB] 84s Get:116 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python-skbio-doc all 0.6.2-4build2 [2342 kB] 84s Get:117 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-accessible-pygments all 0.0.5-2 [790 kB] 84s Get:118 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.14 ppc64el 3.14.0-4 [805 kB] 84s Get:119 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-all ppc64el 3.13.7-2 [892 B] 84s Get:120 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.13-dev ppc64el 3.13.9-1 [508 kB] 84s Get:121 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-dev ppc64el 3.13.7-2 [26.6 kB] 84s Get:122 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.14-dev ppc64el 3.14.0-4 [509 kB] 84s Get:123 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-all-dev ppc64el 3.13.7-2 [914 B] 84s Get:124 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-asttokens all 3.0.0-2 [20.5 kB] 84s Get:125 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-h5py-serial ppc64el 3.13.0-1ubuntu1 [1187 kB] 84s Get:126 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-h5py all 3.13.0-1ubuntu1 [8230 B] 84s Get:127 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-click all 8.2.0+0.really.8.1.8-1 [80.0 kB] 84s Get:128 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-pytz all 2025.2-4 [32.3 kB] 84s Get:129 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pandas-lib ppc64el 2.3.3+dfsg-1ubuntu1 [7666 kB] 85s Get:130 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pandas all 2.3.3+dfsg-1ubuntu1 [2948 kB] 85s Get:131 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-decorator all 5.2.1-2 [28.1 kB] 85s Get:132 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-scipy ppc64el 1.15.3-1ubuntu1 [22.0 MB] 85s Get:133 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-biom-format ppc64el 2.1.16-1build3 [154 kB] 85s Get:134 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-brotli ppc64el 1.1.0-2build6 [430 kB] 85s Get:135 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-soupsieve all 2.7-2 [33.6 kB] 85s Get:136 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-bs4 all 4.13.4-3 [137 kB] 85s Get:137 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-msgpack ppc64el 1.0.3-3build5 [114 kB] 85s Get:138 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-cachecontrol all 0.14.3-1 [18.7 kB] 85s Get:139 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-contourpy ppc64el 1.3.1-2 [274 kB] 85s Get:140 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-cycler all 0.12.1-2 [9850 B] 85s Get:141 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-defusedxml all 0.7.1-3 [42.2 kB] 85s Get:142 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.13-doc all 3.13.9-1 [14.3 MB] 86s Get:143 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-doc all 3.13.7-2 [10.8 kB] 86s Get:144 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-roman all 5.1-1 [10.6 kB] 86s Get:145 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-docutils all 0.21.2+dfsg-2 [409 kB] 86s Get:146 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-executing all 2.2.0-0.2 [25.0 kB] 86s Get:147 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-platformdirs all 4.3.7-1 [16.9 kB] 86s Get:148 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-fs all 2.4.16-9ubuntu1 [91.5 kB] 86s Get:149 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-lxml ppc64el 6.0.2-1 [2452 kB] 86s Get:150 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-lz4 ppc64el 4.4.4+dfsg-3 [28.9 kB] 86s Get:151 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-mpmath all 1.3.0-2 [423 kB] 86s Get:152 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-sympy all 1.14.0-2 [4306 kB] 86s Get:153 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 86s Get:154 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-zopfli ppc64el 0.4.0-1 [11.3 kB] 86s Get:155 http://ftpmaster.internal/ubuntu resolute/universe ppc64el unicode-data all 16.0.0-1 [9513 kB] 86s Get:156 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-fonttools ppc64el 4.57.0-2build1 [1745 kB] 86s Get:157 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-hdmedians ppc64el 0.14.2-6build2 [209 kB] 86s Get:158 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-imagesize all 1.4.1-1 [6844 B] 86s Get:159 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-iniconfig all 2.1.0-1 [6840 B] 86s Get:160 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-parso all 0.8.5-1 [68.0 kB] 86s Get:161 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-typeshed all 0.0~git20241223.ea91db2-4 [1554 kB] 86s Get:162 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-jedi all 0.19.1+ds1-1 [693 kB] 86s Get:163 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 86s Get:164 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-matplotlib-inline all 0.1.7-1 [9186 B] 86s Get:165 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-wcwidth all 0.2.13+dfsg1-1 [26.3 kB] 86s Get:166 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-prompt-toolkit all 3.0.52-1 [258 kB] 86s Get:167 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pure-eval all 0.2.3-1 [11.4 kB] 86s Get:168 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-stack-data all 0.6.3-1 [22.0 kB] 86s Get:169 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-ipython all 8.35.0-2 [575 kB] 86s Get:170 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-joblib all 1.4.2-4 [205 kB] 86s Get:171 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-kiwisolver ppc64el 1.4.10~rc0-1 [72.4 kB] 86s Get:172 http://ftpmaster.internal/ubuntu resolute/main ppc64el libopenjp2-7 ppc64el 2.5.3-2.1 [251 kB] 86s Get:173 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-pil ppc64el 11.3.0-1ubuntu2 [654 kB] 86s Get:174 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.14-tk ppc64el 3.14.0-4 [109 kB] 86s Get:175 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.13-tk ppc64el 3.13.9-1 [108 kB] 86s Get:176 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-tk ppc64el 3.13.9-1 [8948 B] 86s Get:177 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pil.imagetk ppc64el 11.3.0-1ubuntu2 [10.3 kB] 86s Get:178 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-matplotlib ppc64el 3.10.7+dfsg1-1 [17.2 MB] 87s Get:179 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-natsort all 8.4.0-1 [34.1 kB] 87s Get:180 http://ftpmaster.internal/ubuntu resolute/main ppc64el sphinx-common all 8.2.3-1ubuntu2 [656 kB] 87s Get:181 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-alabaster all 0.7.16-0.1 [18.5 kB] 87s Get:182 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-snowballstemmer all 3.0.1-1 [65.9 kB] 87s Get:183 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-sphinx all 8.2.3-1ubuntu2 [482 kB] 87s Get:184 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-numpydoc all 1.9.0-1 [53.2 kB] 87s Get:185 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-patsy all 1.0.2-1 [179 kB] 87s Get:186 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pluggy all 1.6.0-1 [21.0 kB] 87s Get:187 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pydata-sphinx-theme all 0.16.1+dfsg-3 [959 kB] 87s Get:188 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pytest all 8.3.5-2 [252 kB] 87s Get:189 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-statsmodels-lib ppc64el 0.14.5+dfsg-1ubuntu1 [2746 kB] 87s Get:190 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-statsmodels all 0.14.5+dfsg-1ubuntu1 [4970 kB] 87s Get:191 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-skbio ppc64el 0.6.2-4build2 [1456 kB] 87s Get:192 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-sklearn-lib ppc64el 1.7.2+dfsg-3ubuntu1 [6203 kB] 87s Get:193 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-threadpoolctl all 3.1.0-1 [21.3 kB] 87s Get:194 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-sklearn all 1.7.2+dfsg-3ubuntu1 [2616 kB] 87s Get:195 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-sphinx-copybutton all 0.5.2-3 [16.7 kB] 87s Get:196 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-sphinx-design all 0.6.1-2 [894 kB] 87s Get:197 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python-scipy-doc all 1.15.3-1ubuntu1 [26.6 kB] 88s Fetched 262 MB in 11s (23.1 MB/s) 88s Selecting previously unselected package python3-numpy-dev:ppc64el. 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81022 files and directories currently installed.) 88s Preparing to unpack .../000-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_ppc64el.deb ... 88s Unpacking python3-numpy-dev:ppc64el (1:2.2.4+ds-1ubuntu1) ... 88s Selecting previously unselected package libblas3:ppc64el. 88s Preparing to unpack .../001-libblas3_3.12.1-7_ppc64el.deb ... 88s Unpacking libblas3:ppc64el (3.12.1-7) ... 88s Selecting previously unselected package libgfortran5:ppc64el. 88s Preparing to unpack .../002-libgfortran5_15.2.0-7ubuntu1_ppc64el.deb ... 88s Unpacking libgfortran5:ppc64el (15.2.0-7ubuntu1) ... 88s Selecting previously unselected package liblapack3:ppc64el. 88s Preparing to unpack .../003-liblapack3_3.12.1-7_ppc64el.deb ... 88s Unpacking liblapack3:ppc64el (3.12.1-7) ... 88s Selecting previously unselected package python3-numpy. 88s Preparing to unpack .../004-python3-numpy_1%3a2.2.4+ds-1ubuntu1_ppc64el.deb ... 88s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 88s Selecting previously unselected package libpython3.14-minimal:ppc64el. 88s Preparing to unpack .../005-libpython3.14-minimal_3.14.0-4_ppc64el.deb ... 88s Unpacking libpython3.14-minimal:ppc64el (3.14.0-4) ... 88s Selecting previously unselected package python3.14-minimal. 88s Preparing to unpack .../006-python3.14-minimal_3.14.0-4_ppc64el.deb ... 88s Unpacking python3.14-minimal (3.14.0-4) ... 88s Selecting previously unselected package architecture-properties:ppc64el. 88s Preparing to unpack .../007-architecture-properties_0.2.6_ppc64el.deb ... 88s Unpacking architecture-properties:ppc64el (0.2.6) ... 88s Selecting previously unselected package m4. 88s Preparing to unpack .../008-m4_1.4.20-2_ppc64el.deb ... 88s Unpacking m4 (1.4.20-2) ... 88s Selecting previously unselected package autoconf. 88s Preparing to unpack .../009-autoconf_2.72-3.1ubuntu1_all.deb ... 88s Unpacking autoconf (2.72-3.1ubuntu1) ... 88s Selecting previously unselected package autotools-dev. 88s Preparing to unpack .../010-autotools-dev_20240727.1_all.deb ... 88s Unpacking autotools-dev (20240727.1) ... 88s Selecting previously unselected package automake. 88s Preparing to unpack .../011-automake_1%3a1.18.1-2_all.deb ... 88s Unpacking automake (1:1.18.1-2) ... 88s Selecting previously unselected package autopoint. 88s Preparing to unpack .../012-autopoint_0.23.2-1_all.deb ... 88s Unpacking autopoint (0.23.2-1) ... 88s Selecting previously unselected package libtcl8.6:ppc64el. 88s Preparing to unpack .../013-libtcl8.6_8.6.17+dfsg-1_ppc64el.deb ... 88s Unpacking libtcl8.6:ppc64el (8.6.17+dfsg-1) ... 89s Selecting previously unselected package fonts-dejavu-mono. 89s Preparing to unpack .../014-fonts-dejavu-mono_2.37-8_all.deb ... 89s Unpacking fonts-dejavu-mono (2.37-8) ... 89s Selecting previously unselected package fonts-dejavu-core. 89s Preparing to unpack .../015-fonts-dejavu-core_2.37-8_all.deb ... 89s Unpacking fonts-dejavu-core (2.37-8) ... 89s Selecting previously unselected package fontconfig-config. 89s Preparing to unpack .../016-fontconfig-config_2.15.0-2.3ubuntu1_ppc64el.deb ... 89s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 89s Selecting previously unselected package libfontconfig1:ppc64el. 89s Preparing to unpack .../017-libfontconfig1_2.15.0-2.3ubuntu1_ppc64el.deb ... 89s Unpacking libfontconfig1:ppc64el (2.15.0-2.3ubuntu1) ... 89s Selecting previously unselected package libxrender1:ppc64el. 89s Preparing to unpack .../018-libxrender1_1%3a0.9.12-1_ppc64el.deb ... 89s Unpacking libxrender1:ppc64el (1:0.9.12-1) ... 89s Selecting previously unselected package libxft2:ppc64el. 89s Preparing to unpack .../019-libxft2_2.3.6-1build1_ppc64el.deb ... 89s Unpacking libxft2:ppc64el (2.3.6-1build1) ... 89s Selecting previously unselected package x11-common. 89s Preparing to unpack .../020-x11-common_1%3a7.7+24ubuntu1_all.deb ... 89s Unpacking x11-common (1:7.7+24ubuntu1) ... 89s Selecting previously unselected package libxss1:ppc64el. 89s Preparing to unpack .../021-libxss1_1%3a1.2.3-1build3_ppc64el.deb ... 89s Unpacking libxss1:ppc64el (1:1.2.3-1build3) ... 89s Selecting previously unselected package libtk8.6:ppc64el. 89s Preparing to unpack .../022-libtk8.6_8.6.17-1_ppc64el.deb ... 89s Unpacking libtk8.6:ppc64el (8.6.17-1) ... 89s Selecting previously unselected package tk8.6-blt2.5. 89s Preparing to unpack .../023-tk8.6-blt2.5_2.5.3+dfsg-8_ppc64el.deb ... 89s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 89s Selecting previously unselected package blt. 89s Preparing to unpack .../024-blt_2.5.3+dfsg-8_ppc64el.deb ... 89s Unpacking blt (2.5.3+dfsg-8) ... 89s Selecting previously unselected package libisl23:ppc64el. 89s Preparing to unpack .../025-libisl23_0.27-1_ppc64el.deb ... 89s Unpacking libisl23:ppc64el (0.27-1) ... 89s Selecting previously unselected package libmpc3:ppc64el. 89s Preparing to unpack .../026-libmpc3_1.3.1-2_ppc64el.deb ... 89s Unpacking libmpc3:ppc64el (1.3.1-2) ... 89s Selecting previously unselected package cpp-15-powerpc64le-linux-gnu. 89s Preparing to unpack .../027-cpp-15-powerpc64le-linux-gnu_15.2.0-7ubuntu1_ppc64el.deb ... 89s Unpacking cpp-15-powerpc64le-linux-gnu (15.2.0-7ubuntu1) ... 89s Selecting previously unselected package cpp-15. 89s Preparing to unpack .../028-cpp-15_15.2.0-7ubuntu1_ppc64el.deb ... 89s Unpacking cpp-15 (15.2.0-7ubuntu1) ... 89s Selecting previously unselected package cpp-powerpc64le-linux-gnu. 89s Preparing to unpack .../029-cpp-powerpc64le-linux-gnu_4%3a15.2.0-4ubuntu1_ppc64el.deb ... 89s Unpacking cpp-powerpc64le-linux-gnu (4:15.2.0-4ubuntu1) ... 89s Selecting previously unselected package cpp. 89s Preparing to unpack .../030-cpp_4%3a15.2.0-4ubuntu1_ppc64el.deb ... 89s Unpacking cpp (4:15.2.0-4ubuntu1) ... 89s Selecting previously unselected package libcc1-0:ppc64el. 89s Preparing to unpack .../031-libcc1-0_15.2.0-7ubuntu1_ppc64el.deb ... 89s Unpacking libcc1-0:ppc64el (15.2.0-7ubuntu1) ... 89s Selecting previously unselected package libgomp1:ppc64el. 89s Preparing to unpack .../032-libgomp1_15.2.0-7ubuntu1_ppc64el.deb ... 89s Unpacking libgomp1:ppc64el (15.2.0-7ubuntu1) ... 89s Selecting previously unselected package libitm1:ppc64el. 89s Preparing to unpack .../033-libitm1_15.2.0-7ubuntu1_ppc64el.deb ... 89s Unpacking libitm1:ppc64el (15.2.0-7ubuntu1) ... 89s Selecting previously unselected package libasan8:ppc64el. 89s Preparing to unpack .../034-libasan8_15.2.0-7ubuntu1_ppc64el.deb ... 89s Unpacking libasan8:ppc64el (15.2.0-7ubuntu1) ... 89s Selecting previously unselected package liblsan0:ppc64el. 89s Preparing to unpack .../035-liblsan0_15.2.0-7ubuntu1_ppc64el.deb ... 89s Unpacking liblsan0:ppc64el (15.2.0-7ubuntu1) ... 90s Selecting previously unselected package libtsan2:ppc64el. 90s Preparing to unpack .../036-libtsan2_15.2.0-7ubuntu1_ppc64el.deb ... 90s Unpacking libtsan2:ppc64el (15.2.0-7ubuntu1) ... 90s Selecting previously unselected package libubsan1:ppc64el. 90s Preparing to unpack .../037-libubsan1_15.2.0-7ubuntu1_ppc64el.deb ... 90s Unpacking libubsan1:ppc64el (15.2.0-7ubuntu1) ... 90s Selecting previously unselected package libquadmath0:ppc64el. 90s Preparing to unpack .../038-libquadmath0_15.2.0-7ubuntu1_ppc64el.deb ... 90s Unpacking libquadmath0:ppc64el (15.2.0-7ubuntu1) ... 90s Selecting previously unselected package libgcc-15-dev:ppc64el. 90s Preparing to unpack .../039-libgcc-15-dev_15.2.0-7ubuntu1_ppc64el.deb ... 90s Unpacking libgcc-15-dev:ppc64el (15.2.0-7ubuntu1) ... 90s Selecting previously unselected package gcc-15-powerpc64le-linux-gnu. 90s Preparing to unpack .../040-gcc-15-powerpc64le-linux-gnu_15.2.0-7ubuntu1_ppc64el.deb ... 90s Unpacking gcc-15-powerpc64le-linux-gnu (15.2.0-7ubuntu1) ... 90s Selecting previously unselected package gcc-15. 90s Preparing to unpack .../041-gcc-15_15.2.0-7ubuntu1_ppc64el.deb ... 90s Unpacking gcc-15 (15.2.0-7ubuntu1) ... 90s Selecting previously unselected package gcc-powerpc64le-linux-gnu. 90s Preparing to unpack .../042-gcc-powerpc64le-linux-gnu_4%3a15.2.0-4ubuntu1_ppc64el.deb ... 90s Unpacking gcc-powerpc64le-linux-gnu (4:15.2.0-4ubuntu1) ... 90s Selecting previously unselected package gcc. 90s Preparing to unpack .../043-gcc_4%3a15.2.0-4ubuntu1_ppc64el.deb ... 90s Unpacking gcc (4:15.2.0-4ubuntu1) ... 90s Selecting previously unselected package libstdc++-15-dev:ppc64el. 90s Preparing to unpack .../044-libstdc++-15-dev_15.2.0-7ubuntu1_ppc64el.deb ... 90s Unpacking libstdc++-15-dev:ppc64el (15.2.0-7ubuntu1) ... 90s Selecting previously unselected package g++-15-powerpc64le-linux-gnu. 90s Preparing to unpack .../045-g++-15-powerpc64le-linux-gnu_15.2.0-7ubuntu1_ppc64el.deb ... 90s Unpacking g++-15-powerpc64le-linux-gnu (15.2.0-7ubuntu1) ... 90s Selecting previously unselected package g++-15. 90s Preparing to unpack .../046-g++-15_15.2.0-7ubuntu1_ppc64el.deb ... 90s Unpacking g++-15 (15.2.0-7ubuntu1) ... 90s Selecting previously unselected package g++-powerpc64le-linux-gnu. 90s Preparing to unpack .../047-g++-powerpc64le-linux-gnu_4%3a15.2.0-4ubuntu1_ppc64el.deb ... 90s Unpacking g++-powerpc64le-linux-gnu (4:15.2.0-4ubuntu1) ... 91s Selecting previously unselected package g++. 91s Preparing to unpack .../048-g++_4%3a15.2.0-4ubuntu1_ppc64el.deb ... 91s Unpacking g++ (4:15.2.0-4ubuntu1) ... 91s Selecting previously unselected package build-essential. 91s Preparing to unpack .../049-build-essential_12.12ubuntu1_ppc64el.deb ... 91s Unpacking build-essential (12.12ubuntu1) ... 91s Selecting previously unselected package cython3. 91s Preparing to unpack .../050-cython3_3.1.6+dfsg-1ubuntu1_ppc64el.deb ... 91s Unpacking cython3 (3.1.6+dfsg-1ubuntu1) ... 91s Selecting previously unselected package libdebhelper-perl. 91s Preparing to unpack .../051-libdebhelper-perl_13.24.2ubuntu1_all.deb ... 91s Unpacking libdebhelper-perl (13.24.2ubuntu1) ... 91s Selecting previously unselected package libtool. 91s Preparing to unpack .../052-libtool_2.5.4-7_all.deb ... 91s Unpacking libtool (2.5.4-7) ... 91s Selecting previously unselected package dh-autoreconf. 91s Preparing to unpack .../053-dh-autoreconf_21_all.deb ... 91s Unpacking dh-autoreconf (21) ... 91s Selecting previously unselected package libarchive-zip-perl. 91s Preparing to unpack .../054-libarchive-zip-perl_1.68-1_all.deb ... 91s Unpacking libarchive-zip-perl (1.68-1) ... 91s Selecting previously unselected package libfile-stripnondeterminism-perl. 91s Preparing to unpack .../055-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... 91s Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... 91s Selecting previously unselected package dh-strip-nondeterminism. 91s Preparing to unpack .../056-dh-strip-nondeterminism_1.15.0-1_all.deb ... 91s Unpacking dh-strip-nondeterminism (1.15.0-1) ... 91s Selecting previously unselected package debugedit. 91s Preparing to unpack .../057-debugedit_1%3a5.2-3_ppc64el.deb ... 91s Unpacking debugedit (1:5.2-3) ... 91s Selecting previously unselected package dwz. 91s Preparing to unpack .../058-dwz_0.16-2_ppc64el.deb ... 91s Unpacking dwz (0.16-2) ... 91s Selecting previously unselected package gettext. 91s Preparing to unpack .../059-gettext_0.23.2-1_ppc64el.deb ... 91s Unpacking gettext (0.23.2-1) ... 91s Selecting previously unselected package intltool-debian. 91s Preparing to unpack .../060-intltool-debian_0.35.0+20060710.6_all.deb ... 91s Unpacking intltool-debian (0.35.0+20060710.6) ... 91s Selecting previously unselected package po-debconf. 91s Preparing to unpack .../061-po-debconf_1.0.21+nmu1_all.deb ... 91s Unpacking po-debconf (1.0.21+nmu1) ... 91s Selecting previously unselected package debhelper. 91s Preparing to unpack .../062-debhelper_13.24.2ubuntu1_all.deb ... 91s Unpacking debhelper (13.24.2ubuntu1) ... 91s Selecting previously unselected package dh-python. 91s Preparing to unpack .../063-dh-python_6.20250414_all.deb ... 91s Unpacking dh-python (6.20250414) ... 91s Selecting previously unselected package sgml-base. 91s Preparing to unpack .../064-sgml-base_1.31+nmu1_all.deb ... 91s Unpacking sgml-base (1.31+nmu1) ... 91s Selecting previously unselected package xml-core. 91s Preparing to unpack .../065-xml-core_0.19_all.deb ... 91s Unpacking xml-core (0.19) ... 91s Selecting previously unselected package docutils-common. 91s Preparing to unpack .../066-docutils-common_0.21.2+dfsg-2_all.deb ... 91s Unpacking docutils-common (0.21.2+dfsg-2) ... 91s Selecting previously unselected package fonts-lyx. 91s Preparing to unpack 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package libgraphite2-3:ppc64el. 91s Preparing to unpack .../073-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 91s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 91s Selecting previously unselected package libharfbuzz0b:ppc64el. 91s Preparing to unpack .../074-libharfbuzz0b_12.1.0-1_ppc64el.deb ... 91s Unpacking libharfbuzz0b:ppc64el (12.1.0-1) ... 91s Selecting previously unselected package libsz2:ppc64el. 91s Preparing to unpack .../075-libsz2_1.1.4-2_ppc64el.deb ... 91s Unpacking libsz2:ppc64el (1.1.4-2) ... 91s Selecting previously unselected package libhdf5-310:ppc64el. 91s Preparing to unpack .../076-libhdf5-310_1.14.5+repack-4_ppc64el.deb ... 91s Unpacking libhdf5-310:ppc64el (1.14.5+repack-4) ... 92s Selecting previously unselected package libhdf5-hl-310:ppc64el. 92s Preparing to unpack .../077-libhdf5-hl-310_1.14.5+repack-4_ppc64el.deb ... 92s Unpacking libhdf5-hl-310:ppc64el (1.14.5+repack-4) ... 92s Selecting previously unselected package libimagequant0:ppc64el. 92s Preparing to unpack .../078-libimagequant0_2.18.0-1build1_ppc64el.deb ... 92s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 92s Selecting previously unselected package libjpeg-turbo8:ppc64el. 92s Preparing to unpack .../079-libjpeg-turbo8_2.1.5-4ubuntu2_ppc64el.deb ... 92s Unpacking libjpeg-turbo8:ppc64el (2.1.5-4ubuntu2) ... 92s Selecting previously unselected package libjpeg8:ppc64el. 92s Preparing to unpack .../080-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 92s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 92s Selecting previously unselected package libjs-jquery. 92s Preparing to unpack .../081-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 92s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 92s Selecting previously unselected package libjs-underscore. 92s Preparing to unpack .../082-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 92s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 92s Selecting previously unselected package libjs-sphinxdoc. 92s Preparing to unpack .../083-libjs-sphinxdoc_8.2.3-1ubuntu2_all.deb ... 92s Unpacking libjs-sphinxdoc (8.2.3-1ubuntu2) ... 92s Selecting previously unselected package libjson-perl. 92s Preparing to unpack .../084-libjson-perl_4.10000-1_all.deb ... 92s Unpacking libjson-perl (4.10000-1) ... 92s Selecting previously unselected package liblcms2-2:ppc64el. 92s Preparing to unpack .../085-liblcms2-2_2.17-1_ppc64el.deb ... 92s Unpacking liblcms2-2:ppc64el (2.17-1) ... 92s Selecting previously unselected package liblerc4:ppc64el. 92s Preparing to unpack .../086-liblerc4_4.0.0+ds-5ubuntu1_ppc64el.deb ... 92s Unpacking liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 92s Selecting previously unselected package liblzf1:ppc64el. 92s Preparing to unpack .../087-liblzf1_3.6-4_ppc64el.deb ... 92s Unpacking liblzf1:ppc64el (3.6-4) ... 92s Selecting previously unselected package zlib1g-dev:ppc64el. 92s Preparing to unpack .../088-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_ppc64el.deb ... 92s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 92s Selecting previously unselected package libpython3.13-dev:ppc64el. 92s Preparing to unpack .../089-libpython3.13-dev_3.13.9-1_ppc64el.deb ... 92s Unpacking libpython3.13-dev:ppc64el (3.13.9-1) ... 92s Selecting previously unselected package libpython3-dev:ppc64el. 92s Preparing to unpack .../090-libpython3-dev_3.13.7-2_ppc64el.deb ... 92s Unpacking libpython3-dev:ppc64el (3.13.7-2) ... 92s Selecting previously unselected package libpython3.14-stdlib:ppc64el. 92s Preparing to unpack .../091-libpython3.14-stdlib_3.14.0-4_ppc64el.deb ... 92s Unpacking libpython3.14-stdlib:ppc64el (3.14.0-4) ... 92s Selecting previously unselected package libpython3.14:ppc64el. 92s Preparing to unpack .../092-libpython3.14_3.14.0-4_ppc64el.deb ... 92s Unpacking libpython3.14:ppc64el (3.14.0-4) ... 92s Selecting previously unselected package libpython3.14-dev:ppc64el. 92s Preparing to unpack .../093-libpython3.14-dev_3.14.0-4_ppc64el.deb ... 92s Unpacking libpython3.14-dev:ppc64el (3.14.0-4) ... 92s Selecting previously unselected package libpython3-all-dev:ppc64el. 92s Preparing to unpack .../094-libpython3-all-dev_3.13.7-2_ppc64el.deb ... 92s Unpacking libpython3-all-dev:ppc64el (3.13.7-2) ... 92s Selecting previously unselected package libqhull-r8.0:ppc64el. 92s Preparing to unpack .../095-libqhull-r8.0_2020.2-7_ppc64el.deb ... 92s Unpacking libqhull-r8.0:ppc64el (2020.2-7) ... 92s Selecting previously unselected package libraqm0:ppc64el. 92s Preparing to unpack .../096-libraqm0_0.10.3-1_ppc64el.deb ... 92s Unpacking libraqm0:ppc64el (0.10.3-1) ... 92s Selecting previously unselected package libsharpyuv0:ppc64el. 92s Preparing to unpack .../097-libsharpyuv0_1.5.0-0.1_ppc64el.deb ... 92s Unpacking libsharpyuv0:ppc64el (1.5.0-0.1) ... 92s Selecting previously unselected package libsimde-dev. 92s Preparing to unpack .../098-libsimde-dev_0.8.2-3_all.deb ... 92s Unpacking libsimde-dev (0.8.2-3) ... 93s Selecting previously unselected package libssw0:ppc64el. 93s Preparing to unpack .../099-libssw0_1.1-15_ppc64el.deb ... 93s Unpacking libssw0:ppc64el (1.1-15) ... 93s Selecting previously unselected package libssw-dev:ppc64el. 93s Preparing to unpack .../100-libssw-dev_1.1-15_ppc64el.deb ... 93s Unpacking libssw-dev:ppc64el (1.1-15) ... 93s Selecting previously unselected package libjbig0:ppc64el. 93s Preparing to unpack .../101-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ... 93s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ... 93s Selecting previously unselected package libwebp7:ppc64el. 93s Preparing to unpack .../102-libwebp7_1.5.0-0.1_ppc64el.deb ... 93s Unpacking libwebp7:ppc64el (1.5.0-0.1) ... 93s Selecting previously unselected package libtiff6:ppc64el. 93s Preparing to unpack .../103-libtiff6_4.7.0-3ubuntu3_ppc64el.deb ... 93s Unpacking libtiff6:ppc64el (4.7.0-3ubuntu3) ... 93s Selecting previously unselected package libwebpdemux2:ppc64el. 93s Preparing to unpack .../104-libwebpdemux2_1.5.0-0.1_ppc64el.deb ... 93s Unpacking libwebpdemux2:ppc64el (1.5.0-0.1) ... 93s Selecting previously unselected package libwebpmux3:ppc64el. 93s Preparing to unpack .../105-libwebpmux3_1.5.0-0.1_ppc64el.deb ... 93s Unpacking libwebpmux3:ppc64el (1.5.0-0.1) ... 93s Selecting previously unselected package libxslt1.1:ppc64el. 93s Preparing to unpack .../106-libxslt1.1_1.1.43-0.3_ppc64el.deb ... 93s Unpacking libxslt1.1:ppc64el (1.1.43-0.3) ... 93s Selecting previously unselected package libzopfli1. 93s Preparing to unpack .../107-libzopfli1_1.0.3-3_ppc64el.deb ... 93s Unpacking libzopfli1 (1.0.3-3) ... 93s Selecting previously unselected package node-fortawesome-fontawesome-free. 93s Preparing to unpack .../108-node-fortawesome-fontawesome-free_6.7.2+ds1-1_all.deb ... 93s Unpacking node-fortawesome-fontawesome-free (6.7.2+ds1-1) ... 93s Selecting previously unselected package pybuild-plugin-autopkgtest. 93s Preparing to unpack .../109-pybuild-plugin-autopkgtest_6.20250414_all.deb ... 93s Unpacking pybuild-plugin-autopkgtest (6.20250414) ... 93s Selecting previously unselected package python-biom-format-doc. 93s Preparing to unpack .../110-python-biom-format-doc_2.1.16-1build3_all.deb ... 93s Unpacking python-biom-format-doc (2.1.16-1build3) ... 93s Selecting previously unselected package python-matplotlib-data. 93s Preparing to unpack .../111-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 93s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 93s Selecting previously unselected package python-numpy-doc. 93s Preparing to unpack .../112-python-numpy-doc_1%3a2.2.4+ds-1ubuntu1_all.deb ... 93s Unpacking python-numpy-doc (1:2.2.4+ds-1ubuntu1) ... 94s Selecting previously unselected package libjs-mathjax. 94s Preparing to unpack .../113-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 94s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 94s Selecting previously unselected package python-pandas-doc. 94s Preparing to unpack .../114-python-pandas-doc_2.3.3+dfsg-1ubuntu1_all.deb ... 94s Unpacking python-pandas-doc (2.3.3+dfsg-1ubuntu1) ... 96s Selecting previously unselected package python-skbio-doc. 96s Preparing to unpack .../115-python-skbio-doc_0.6.2-4build2_all.deb ... 96s Unpacking python-skbio-doc (0.6.2-4build2) ... 96s Selecting previously unselected package python3-accessible-pygments. 96s Preparing to unpack .../116-python3-accessible-pygments_0.0.5-2_all.deb ... 96s Unpacking python3-accessible-pygments (0.0.5-2) ... 96s Selecting previously unselected package python3.14. 96s Preparing to unpack .../117-python3.14_3.14.0-4_ppc64el.deb ... 96s Unpacking python3.14 (3.14.0-4) ... 96s Selecting previously unselected package python3-all. 96s Preparing to unpack .../118-python3-all_3.13.7-2_ppc64el.deb ... 96s Unpacking python3-all (3.13.7-2) ... 96s Selecting previously unselected package python3.13-dev. 96s Preparing to unpack .../119-python3.13-dev_3.13.9-1_ppc64el.deb ... 96s Unpacking python3.13-dev (3.13.9-1) ... 96s Selecting previously unselected package python3-dev. 96s Preparing to unpack .../120-python3-dev_3.13.7-2_ppc64el.deb ... 96s Unpacking python3-dev (3.13.7-2) ... 96s Selecting previously unselected package python3.14-dev. 96s Preparing to unpack .../121-python3.14-dev_3.14.0-4_ppc64el.deb ... 96s Unpacking python3.14-dev (3.14.0-4) ... 96s Selecting previously unselected package python3-all-dev. 96s Preparing to unpack .../122-python3-all-dev_3.13.7-2_ppc64el.deb ... 96s Unpacking python3-all-dev (3.13.7-2) ... 96s Selecting previously unselected package python3-asttokens. 96s Preparing to unpack .../123-python3-asttokens_3.0.0-2_all.deb ... 96s Unpacking python3-asttokens (3.0.0-2) ... 96s Selecting previously unselected package python3-h5py-serial. 96s Preparing to unpack .../124-python3-h5py-serial_3.13.0-1ubuntu1_ppc64el.deb ... 96s Unpacking python3-h5py-serial (3.13.0-1ubuntu1) ... 96s Selecting previously unselected package python3-h5py. 96s Preparing to unpack .../125-python3-h5py_3.13.0-1ubuntu1_all.deb ... 96s Unpacking python3-h5py (3.13.0-1ubuntu1) ... 96s Selecting previously unselected package python3-click. 96s Preparing to unpack .../126-python3-click_8.2.0+0.really.8.1.8-1_all.deb ... 96s Unpacking python3-click (8.2.0+0.really.8.1.8-1) ... 96s Selecting previously unselected package python3-pytz. 96s Preparing to unpack .../127-python3-pytz_2025.2-4_all.deb ... 96s Unpacking python3-pytz (2025.2-4) ... 96s Selecting previously unselected package python3-pandas-lib:ppc64el. 96s Preparing to unpack .../128-python3-pandas-lib_2.3.3+dfsg-1ubuntu1_ppc64el.deb ... 96s Unpacking python3-pandas-lib:ppc64el (2.3.3+dfsg-1ubuntu1) ... 97s Selecting previously unselected package python3-pandas. 97s Preparing to unpack .../129-python3-pandas_2.3.3+dfsg-1ubuntu1_all.deb ... 97s Unpacking python3-pandas (2.3.3+dfsg-1ubuntu1) ... 97s Selecting previously unselected package python3-decorator. 97s Preparing to unpack .../130-python3-decorator_5.2.1-2_all.deb ... 97s Unpacking python3-decorator (5.2.1-2) ... 97s Selecting previously unselected package python3-scipy. 97s Preparing to unpack .../131-python3-scipy_1.15.3-1ubuntu1_ppc64el.deb ... 97s Unpacking python3-scipy (1.15.3-1ubuntu1) ... 98s Selecting previously unselected package python3-biom-format. 98s Preparing to unpack .../132-python3-biom-format_2.1.16-1build3_ppc64el.deb ... 98s Unpacking python3-biom-format (2.1.16-1build3) ... 98s Selecting previously unselected package python3-brotli. 98s Preparing to unpack .../133-python3-brotli_1.1.0-2build6_ppc64el.deb ... 98s Unpacking python3-brotli (1.1.0-2build6) ... 98s Selecting previously unselected package python3-soupsieve. 98s Preparing to unpack .../134-python3-soupsieve_2.7-2_all.deb ... 98s Unpacking python3-soupsieve (2.7-2) ... 98s Selecting previously unselected package python3-bs4. 98s Preparing to unpack .../135-python3-bs4_4.13.4-3_all.deb ... 98s Unpacking python3-bs4 (4.13.4-3) ... 98s Selecting previously unselected package python3-msgpack. 98s 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python3.13-doc (3.13.9-1) ... 98s Selecting previously unselected package python3-doc. 98s Preparing to unpack .../142-python3-doc_3.13.7-2_all.deb ... 98s Unpacking python3-doc (3.13.7-2) ... 98s Selecting previously unselected package python3-roman. 98s Preparing to unpack .../143-python3-roman_5.1-1_all.deb ... 98s Unpacking python3-roman (5.1-1) ... 98s Selecting previously unselected package python3-docutils. 98s Preparing to unpack .../144-python3-docutils_0.21.2+dfsg-2_all.deb ... 98s Unpacking python3-docutils (0.21.2+dfsg-2) ... 98s Selecting previously unselected package python3-executing. 98s Preparing to unpack .../145-python3-executing_2.2.0-0.2_all.deb ... 98s Unpacking python3-executing (2.2.0-0.2) ... 98s Selecting previously unselected package python3-platformdirs. 98s Preparing to unpack .../146-python3-platformdirs_4.3.7-1_all.deb ... 98s Unpacking python3-platformdirs (4.3.7-1) ... 98s Selecting previously unselected package python3-fs. 98s Preparing to unpack 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previously unselected package python3-zopfli. 99s Preparing to unpack .../153-python3-zopfli_0.4.0-1_ppc64el.deb ... 99s Unpacking python3-zopfli (0.4.0-1) ... 99s Selecting previously unselected package unicode-data. 99s Preparing to unpack .../154-unicode-data_16.0.0-1_all.deb ... 99s Unpacking unicode-data (16.0.0-1) ... 99s Selecting previously unselected package python3-fonttools. 99s Preparing to unpack .../155-python3-fonttools_4.57.0-2build1_ppc64el.deb ... 99s Unpacking python3-fonttools (4.57.0-2build1) ... 99s Selecting previously unselected package python3-hdmedians. 99s Preparing to unpack .../156-python3-hdmedians_0.14.2-6build2_ppc64el.deb ... 99s Unpacking python3-hdmedians (0.14.2-6build2) ... 99s Selecting previously unselected package python3-imagesize. 99s Preparing to unpack .../157-python3-imagesize_1.4.1-1_all.deb ... 99s Unpacking python3-imagesize (1.4.1-1) ... 99s Selecting previously unselected package python3-iniconfig. 99s Preparing to unpack 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100s Unpacking python3-ipython (8.35.0-2) ... 100s Selecting previously unselected package python3-joblib. 100s Preparing to unpack .../169-python3-joblib_1.4.2-4_all.deb ... 100s Unpacking python3-joblib (1.4.2-4) ... 100s Selecting previously unselected package python3-kiwisolver. 100s Preparing to unpack .../170-python3-kiwisolver_1.4.10~rc0-1_ppc64el.deb ... 100s Unpacking python3-kiwisolver (1.4.10~rc0-1) ... 100s Selecting previously unselected package libopenjp2-7:ppc64el. 100s Preparing to unpack .../171-libopenjp2-7_2.5.3-2.1_ppc64el.deb ... 100s Unpacking libopenjp2-7:ppc64el (2.5.3-2.1) ... 100s Selecting previously unselected package python3-pil:ppc64el. 100s Preparing to unpack .../172-python3-pil_11.3.0-1ubuntu2_ppc64el.deb ... 100s Unpacking python3-pil:ppc64el (11.3.0-1ubuntu2) ... 100s Selecting previously unselected package python3.14-tk. 100s Preparing to unpack .../173-python3.14-tk_3.14.0-4_ppc64el.deb ... 100s Unpacking python3.14-tk (3.14.0-4) ... 101s Selecting previously unselected package python3.13-tk. 101s Preparing to unpack .../174-python3.13-tk_3.13.9-1_ppc64el.deb ... 101s Unpacking python3.13-tk (3.13.9-1) ... 101s Selecting previously unselected package python3-tk:ppc64el. 101s Preparing to unpack .../175-python3-tk_3.13.9-1_ppc64el.deb ... 101s Unpacking python3-tk:ppc64el (3.13.9-1) ... 101s Selecting previously unselected package python3-pil.imagetk:ppc64el. 101s Preparing to unpack .../176-python3-pil.imagetk_11.3.0-1ubuntu2_ppc64el.deb ... 101s Unpacking python3-pil.imagetk:ppc64el (11.3.0-1ubuntu2) ... 101s Selecting previously unselected package python3-matplotlib. 101s Preparing to unpack .../177-python3-matplotlib_3.10.7+dfsg1-1_ppc64el.deb ... 101s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 101s Selecting previously unselected package python3-natsort. 101s Preparing to unpack .../178-python3-natsort_8.4.0-1_all.deb ... 101s Unpacking python3-natsort (8.4.0-1) ... 101s Selecting previously unselected package sphinx-common. 101s Preparing to unpack .../179-sphinx-common_8.2.3-1ubuntu2_all.deb ... 101s Unpacking sphinx-common (8.2.3-1ubuntu2) ... 101s Selecting previously unselected package python3-alabaster. 101s Preparing to unpack .../180-python3-alabaster_0.7.16-0.1_all.deb ... 101s Unpacking python3-alabaster (0.7.16-0.1) ... 101s Selecting previously unselected package python3-snowballstemmer. 101s Preparing to unpack .../181-python3-snowballstemmer_3.0.1-1_all.deb ... 101s Unpacking python3-snowballstemmer (3.0.1-1) ... 101s Selecting previously unselected package python3-sphinx. 101s Preparing to unpack .../182-python3-sphinx_8.2.3-1ubuntu2_all.deb ... 101s Unpacking python3-sphinx (8.2.3-1ubuntu2) ... 101s Selecting previously unselected package python3-numpydoc. 101s Preparing to unpack .../183-python3-numpydoc_1.9.0-1_all.deb ... 101s Unpacking python3-numpydoc (1.9.0-1) ... 101s Selecting previously unselected package python3-patsy. 101s Preparing to unpack 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python3-sphinx-copybutton. 102s Preparing to unpack .../194-python3-sphinx-copybutton_0.5.2-3_all.deb ... 102s Unpacking python3-sphinx-copybutton (0.5.2-3) ... 102s Selecting previously unselected package python3-sphinx-design. 102s Preparing to unpack .../195-python3-sphinx-design_0.6.1-2_all.deb ... 102s Unpacking python3-sphinx-design (0.6.1-2) ... 103s Selecting previously unselected package python-scipy-doc. 103s Preparing to unpack .../196-python-scipy-doc_1.15.3-1ubuntu1_all.deb ... 103s Unpacking python-scipy-doc (1.15.3-1ubuntu1) ... 103s Setting up dh-python (6.20250414) ... 103s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 103s Setting up libsimde-dev (0.8.2-3) ... 103s Setting up liblcms2-2:ppc64el (2.17-1) ... 103s Setting up python3-iniconfig (2.1.0-1) ... 103s Setting up libsharpyuv0:ppc64el (1.5.0-0.1) ... 103s Setting up python3-pure-eval (0.2.3-1) ... 103s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 103s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 103s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 103s Setting up libxrender1:ppc64el (1:0.9.12-1) ... 103s Setting up python3-joblib (1.4.2-4) ... 104s Setting up python3-parso (0.8.5-1) ... 104s Setting up python3-lz4 (4.4.4+dfsg-3) ... 104s Setting up python3-defusedxml (0.7.1-3) ... 104s Setting up libarchive-zip-perl (1.68-1) ... 104s Setting up python3-asttokens (3.0.0-2) ... 105s Setting up architecture-properties:ppc64el (0.2.6) ... 105s Setting up python3-alabaster (0.7.16-0.1) ... 105s Setting up fonts-lyx (2.4.4-2) ... 105s Setting up libdebhelper-perl (13.24.2ubuntu1) ... 105s Setting up libpython3.14-minimal:ppc64el (3.14.0-4) ... 105s Setting up python3-threadpoolctl (3.1.0-1) ... 105s Setting up x11-common (1:7.7+24ubuntu1) ... 106s Setting up libdeflate0:ppc64el (1.23-2) ... 106s Setting up m4 (1.4.20-2) ... 106s Setting up libqhull-r8.0:ppc64el (2020.2-7) ... 106s Setting up python3-pytz (2025.2-4) ... 106s Setting up node-fortawesome-fontawesome-free (6.7.2+ds1-1) ... 106s Setting up libgomp1:ppc64el (15.2.0-7ubuntu1) ... 106s Setting up python3-click (8.2.0+0.really.8.1.8-1) ... 106s Setting up fonts-open-sans (1.11-2) ... 106s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ... 106s Setting up libaec0:ppc64el (1.1.4-2) ... 106s Setting up python3-platformdirs (4.3.7-1) ... 106s Setting up python3-natsort (8.4.0-1) ... 106s Setting up python3-fs (2.4.16-9ubuntu1) ... 107s Setting up unicode-data (16.0.0-1) ... 107s Setting up python3-roman (5.1-1) ... 107s Setting up python3-decorator (5.2.1-2) ... 107s Setting up autotools-dev (20240727.1) ... 107s Setting up libblas3:ppc64el (3.12.1-7) ... 107s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 107s Setting up libexpat1-dev:ppc64el (2.7.3-1) ... 107s Setting up python3-wcwidth (0.2.13+dfsg1-1) ... 107s Setting up libzopfli1 (1.0.3-3) ... 107s Setting up python3-accessible-pygments (0.0.5-2) ... 108s Setting up python3-typeshed (0.0~git20241223.ea91db2-4) ... 108s Setting up python3-executing (2.2.0-0.2) ... 108s Setting up python3-snowballstemmer (3.0.1-1) ... 108s Setting up python3-brotli (1.1.0-2build6) ... 108s Setting up liblzf1:ppc64el (3.6-4) ... 108s Setting up libquadmath0:ppc64el (15.2.0-7ubuntu1) ... 108s Setting up python3-cycler (0.12.1-2) ... 109s Setting up libimagequant0:ppc64el (2.18.0-1build1) ... 109s Setting up fonts-dejavu-mono (2.37-8) ... 109s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 109s Setting up libmpc3:ppc64el (1.3.1-2) ... 109s Setting up python3-numpy-dev:ppc64el (1:2.2.4+ds-1ubuntu1) ... 109s Setting up cython3 (3.1.6+dfsg-1ubuntu1) ... 111s Setting up libtcl8.6:ppc64el (8.6.17+dfsg-1) ... 111s Setting up autopoint (0.23.2-1) ... 111s Setting up fonts-dejavu-core (2.37-8) ... 111s Setting up libjpeg-turbo8:ppc64el (2.1.5-4ubuntu2) ... 111s Setting up libgfortran5:ppc64el (15.2.0-7ubuntu1) ... 111s Setting up autoconf (2.72-3.1ubuntu1) ... 111s Setting up python3-pluggy (1.6.0-1) ... 111s Setting up libwebp7:ppc64el (1.5.0-0.1) ... 111s Setting up libubsan1:ppc64el (15.2.0-7ubuntu1) ... 111s Setting up zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 111s Setting up dwz (0.16-2) ... 111s Setting up python3-traitlets (5.14.3+really5.14.3-1) ... 111s Setting up libasan8:ppc64el (15.2.0-7ubuntu1) ... 111s Setting up libjson-perl (4.10000-1) ... 111s Setting up libxslt1.1:ppc64el (1.1.43-0.3) ... 111s Setting up debugedit (1:5.2-3) ... 111s Setting up libopenjp2-7:ppc64el (2.5.3-2.1) ... 111s Setting up libharfbuzz0b:ppc64el (12.1.0-1) ... 111s Setting up sgml-base (1.31+nmu1) ... 111s Setting up python3-msgpack (1.0.3-3build5) ... 111s Setting up libxss1:ppc64el (1:1.2.3-1build3) ... 111s Setting up python3-cachecontrol (0.14.3-1) ... 111s Setting up libtsan2:ppc64el (15.2.0-7ubuntu1) ... 111s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 111s Setting up python3-mpmath (1.3.0-2) ... 112s Setting up libisl23:ppc64el (0.27-1) ... 112s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 112s Setting up libwebpmux3:ppc64el (1.5.0-0.1) ... 112s Setting up python3-stack-data (0.6.3-1) ... 113s Setting up libssw0:ppc64el (1.1-15) ... 113s Setting up python3-soupsieve (2.7-2) ... 113s Setting up python3.14-minimal (3.14.0-4) ... 114s Setting up libcc1-0:ppc64el (15.2.0-7ubuntu1) ... 114s Setting up liblsan0:ppc64el (15.2.0-7ubuntu1) ... 114s Setting up libsz2:ppc64el (1.1.4-2) ... 114s Setting up libitm1:ppc64el (15.2.0-7ubuntu1) ... 114s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 114s Setting up python3-imagesize (1.4.1-1) ... 114s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 114s Setting up automake (1:1.18.1-2) ... 114s update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode 114s Setting up python3-prompt-toolkit (3.0.52-1) ... 115s Setting up libfile-stripnondeterminism-perl 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python3-dev (3.13.7-2) ... 155s Setting up python3-h5py (3.13.0-1ubuntu1) ... 155s Setting up python3-sklearn (1.7.2+dfsg-3ubuntu1) ... 159s Setting up python3-statsmodels (0.14.5+dfsg-1ubuntu1) ... 165s Setting up cpp (4:15.2.0-4ubuntu1) ... 165s Setting up python3-all-dev (3.13.7-2) ... 165s Setting up g++-15-powerpc64le-linux-gnu (15.2.0-7ubuntu1) ... 165s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 165s Setting up python3.14-tk (3.14.0-4) ... 165s Setting up libtool (2.5.4-7) ... 165s Setting up blt (2.5.3+dfsg-8) ... 165s Setting up python3-tk:ppc64el (3.13.9-1) ... 165s Setting up gcc (4:15.2.0-4ubuntu1) ... 165s Setting up dh-autoreconf (21) ... 165s Setting up python3-biom-format (2.1.16-1build3) ... 165s Setting up python3-pil.imagetk:ppc64el (11.3.0-1ubuntu2) ... 165s Setting up python3-skbio (0.6.2-4build2) ... 166s Setting up g++-15 (15.2.0-7ubuntu1) ... 166s Setting up g++-powerpc64le-linux-gnu (4:15.2.0-4ubuntu1) ... 166s Setting up debhelper (13.24.2ubuntu1) ... 166s Setting up g++ (4:15.2.0-4ubuntu1) ... 166s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 166s Setting up build-essential (12.12ubuntu1) ... 166s Setting up pybuild-plugin-autopkgtest (6.20250414) ... 166s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... 167s Setting up python3-fonttools (4.57.0-2build1) ... 168s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 172s Processing triggers for libc-bin (2.42-2ubuntu2) ... 172s Processing triggers for systemd (257.9-0ubuntu2) ... 172s Processing triggers for man-db (2.13.1-1) ... 173s Processing triggers for install-info (7.2-5) ... 174s Processing triggers for sgml-base (1.31+nmu1) ... 174s Setting up docutils-common (0.21.2+dfsg-2) ... 174s Processing triggers for sgml-base (1.31+nmu1) ... 174s Setting up python3-docutils (0.21.2+dfsg-2) ... 175s Setting up python3-sphinx (8.2.3-1ubuntu2) ... 176s Setting up python3-sphinx-copybutton (0.5.2-3) ... 176s Setting up python3-sphinx-design (0.6.1-2) ... 176s Setting up python3-numpydoc (1.9.0-1) ... 177s Setting up python3-pydata-sphinx-theme (0.16.1+dfsg-3) ... 178s autopkgtest [11:54:36]: test pybuild-autopkgtest: pybuild-autopkgtest 178s autopkgtest [11:54:36]: test pybuild-autopkgtest: [----------------------- 178s pybuild-autopkgtest 179s I: pybuild base:311: cd /tmp/autopkgtest.DDUTuS/autopkgtest_tmp/build; python3.14 -m pytest --pyargs skbio 179s ERROR: while parsing the following warning configuration: 179s 179s ignore::skbio.util.SkbioWarning 179s 179s This error occurred: 179s 179s Traceback (most recent call last): 179s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 179s from . import _debian_h5py_serial as _h5py 179s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 179s from . import _errors 179s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 179s 179s During handling of the above exception, another exception occurred: 179s 179s Traceback (most recent call last): 179s File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 1918, in parse_warning_filter 179s category: type[Warning] = _resolve_warning_category(category_) 179s ~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ 179s File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 1956, in _resolve_warning_category 179s m = __import__(module, None, None, [klass]) 179s File "/usr/lib/python3/dist-packages/skbio/__init__.py", line 12, in 179s import skbio.io # noqa 179s ^^^^^^^^^^^^^^^ 179s File "/usr/lib/python3/dist-packages/skbio/io/__init__.py", line 251, in 179s from .registry import write, read, sniff, create_format, io_registry 179s File "/usr/lib/python3/dist-packages/skbio/io/registry.py", line 181, in 179s from .util import _resolve_file, open_file, open_files, _d as _open_kwargs 179s File "/usr/lib/python3/dist-packages/skbio/io/util.py", line 32, in 179s from skbio.io._iosources import get_io_sources, get_compression_handler 179s File "/usr/lib/python3/dist-packages/skbio/io/_iosources.py", line 18, in 179s from ._fileobject import ( 179s ...<3 lines>... 179s ) 179s File "/usr/lib/python3/dist-packages/skbio/io/_fileobject.py", line 10, in 179s import h5py 179s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 179s from . import _debian_h5py_mpi as _h5py 179s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 179s 179s 179s E: pybuild pybuild:389: test: plugin distutils failed with: exit code=4: cd /tmp/autopkgtest.DDUTuS/autopkgtest_tmp/build; python3.14 -m pytest --pyargs skbio 179s I: pybuild base:311: cd /tmp/autopkgtest.DDUTuS/autopkgtest_tmp/build; python3.13 -m pytest --pyargs skbio 183s ============================= test session starts ============================== 183s platform linux -- Python 3.13.9, pytest-8.3.5, pluggy-1.6.0 183s rootdir: /tmp/autopkgtest.DDUTuS/autopkgtest_tmp/build 183s configfile: pyproject.toml 183s plugins: typeguard-4.4.2 183s collected 2793 items 183s 183s alignment/tests/test_pairwise.py ......................... [ 0%] 183s alignment/tests/test_path.py ................. [ 1%] 183s alignment/tests/test_ssw.py ........................... [ 2%] 183s alignment/tests/test_tabular_msa.py .................................... [ 3%] 184s ........................................................................ [ 6%] 185s ........................................................................ [ 8%] 186s ........................................................................ [ 11%] 186s ........................................................................ [ 14%] 186s ........................................................................ [ 16%] 186s ..... [ 16%] 186s diversity/alpha/tests/test_ace.py .. [ 16%] 189s diversity/alpha/tests/test_base.py ............................... [ 18%] 189s diversity/alpha/tests/test_chao1.py ... [ 18%] 189s diversity/alpha/tests/test_gini.py .... [ 18%] 195s diversity/alpha/tests/test_lladser.py ............ [ 18%] 195s diversity/alpha/tests/test_pd.py ................ [ 19%] 195s diversity/beta/tests/test_unifrac.py ............................ [ 20%] 195s diversity/tests/test_block.py ........... [ 20%] 195s diversity/tests/test_driver.py ..................................... [ 21%] 195s diversity/tests/test_util.py ................ [ 22%] 195s embedding/tests/test_embedding.py ................... [ 23%] 195s embedding/tests/test_protein.py .............. [ 23%] 195s io/format/tests/test_base.py ................................ [ 24%] 195s io/format/tests/test_binary_dm.py ......... [ 25%] 195s io/format/tests/test_biom.py ... [ 25%] 195s io/format/tests/test_blast6.py ........... [ 25%] 196s io/format/tests/test_blast7.py .............. [ 26%] 196s io/format/tests/test_clustal.py ............. [ 26%] 196s io/format/tests/test_embed.py ........ [ 26%] 198s io/format/tests/test_embl.py ............................... [ 28%] 198s io/format/tests/test_emptyfile.py .. [ 28%] 203s io/format/tests/test_fasta.py ................ [ 28%] 206s io/format/tests/test_fastq.py ............... [ 29%] 207s io/format/tests/test_genbank.py ..................... [ 30%] 207s io/format/tests/test_gff3.py ........................ [ 30%] 207s io/format/tests/test_lsmat.py ....... [ 31%] 207s io/format/tests/test_newick.py ....... [ 31%] 208s io/format/tests/test_ordination.py ..... [ 31%] 209s io/format/tests/test_phylip.py ....... [ 31%] 209s io/format/tests/test_qseq.py ...... [ 32%] 209s io/format/tests/test_sample_metadata.py .... [ 32%] 209s io/format/tests/test_sequence_feature_vocabulary.py .... [ 32%] 210s io/format/tests/test_stockholm.py ...................................... [ 33%] 210s ..................................... [ 34%] 210s io/format/tests/test_taxdump.py ...... [ 35%] 210s io/tests/test_iosources.py .......... [ 35%] 210s io/tests/test_registry.py .............................................. [ 37%] 211s ................................................ [ 38%] 213s io/tests/test_util.py .........................................sssssssss [ 40%] 215s sssssssssssssssssssss................................................... [ 43%] 220s ........................................................................ [ 45%] 221s .......................... [ 46%] 222s metadata/tests/test_enan.py ... [ 46%] 223s metadata/tests/test_intersection.py ............... [ 47%] 223s metadata/tests/test_interval.py ........................................ [ 48%] 223s ............................... [ 49%] 223s metadata/tests/test_io.py .............................................. [ 51%] 224s ............................................................ [ 53%] 224s metadata/tests/test_metadata.py ........................................ [ 55%] 224s .................... [ 55%] 224s metadata/tests/test_metadata_column.py ................................. [ 57%] 224s ........................................ [ 58%] 224s metadata/tests/test_missing.py ................ [ 59%] 224s metadata/tests/test_mixin.py ........................................... [ 60%] 224s ....................................................... [ 62%] 224s sequence/tests/test_alphabet.py ..... [ 62%] 224s sequence/tests/test_distance.py .......................... [ 63%] 224s sequence/tests/test_dna.py ... [ 63%] 224s sequence/tests/test_genetic_code.py .......................... [ 64%] 224s sequence/tests/test_grammared_sequence.py .............................. [ 65%] 224s ................... [ 66%] 224s sequence/tests/test_nucleotide_sequences.py ............................ [ 67%] 224s . [ 67%] 224s sequence/tests/test_protein.py ........... [ 67%] 224s sequence/tests/test_rna.py ... [ 68%] 224s sequence/tests/test_sequence.py ........................................ [ 69%] 225s ........................................................................ [ 72%] 225s ........................................................................ [ 74%] 225s ........................................................................ [ 77%] 225s ....... [ 77%] 225s sequence/tests/test_substitution.py ........ [ 77%] 225s stats/distance/tests/test_anosim.py .... [ 77%] 225s stats/distance/tests/test_base.py ...................................... [ 79%] 225s .......................................................... [ 81%] 232s stats/distance/tests/test_bioenv.py ................. [ 81%] 236s stats/distance/tests/test_mantel.py .................................... [ 83%] 236s ........ [ 83%] 236s stats/distance/tests/test_permanova.py ..... [ 83%] 249s stats/distance/tests/test_permdisp.py .............. [ 84%] 249s stats/evolve/tests/test_hommola.py ............ [ 84%] 250s stats/ordination/tests/test_canonical_correspondence_analysis.py ...... [ 84%] 250s stats/ordination/tests/test_correspondence_analysis.py ........ [ 85%] 250s stats/ordination/tests/test_ordination_results.py ............. [ 85%] 250s stats/ordination/tests/test_principal_coordinate_analysis.py ........... [ 86%] 250s . [ 86%] 250s stats/ordination/tests/test_redundancy_analysis.py .... [ 86%] 250s stats/ordination/tests/test_util.py .......... [ 86%] 251s stats/tests/test_composition.py ........................................ [ 87%] 267s .......................................... [ 89%] 267s stats/tests/test_gradient.py .......................... [ 90%] 267s stats/tests/test_misc.py ... [ 90%] 270s stats/tests/test_power.py ........................................... [ 92%] 271s stats/tests/test_subsample.py ............ [ 92%] 271s table/tests/test_base.py . [ 92%] 271s tests/test_base.py ..... [ 92%] 271s tests/test_workflow.py ................. [ 93%] 271s tree/tests/test_majority_rule.py ...... [ 93%] 272s tree/tests/test_nj.py ............................ [ 94%] 272s tree/tests/test_tree.py ................................................ [ 96%] 273s ........................................................ [ 98%] 273s util/tests/test_decorator.py ........ [ 98%] 273s util/tests/test_misc.py .................... [ 99%] 273s util/tests/test_plotting.py ...... [ 99%] 273s util/tests/test_testing.py ............... [100%] 273s 273s =============================== warnings summary =============================== 273s alignment/tests/test_pairwise.py::PairwiseAlignmentTests::test_compute_score_and_traceback_matrices 273s /usr/lib/python3/dist-packages/skbio/util/_warning.py:56: DeprecationWarning: make_identity_substitution_matrix is deprecated as of 0.4.0. It has been replaced by the SubstitutionMatrix class. Additional details at https://github.com/scikit-bio/scikit-bio/pull/1913. 273s warn( 273s 273s alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_invalid_type 273s /usr/lib/python3/dist-packages/skbio/util/_warning.py:56: DeprecationWarning: local_pairwise_align_ssw is deprecated as of 0.5.8. It will be removed in favor of more general purpose and performant aligners. Additional details at https://github.com/scikit-bio/scikit-bio/issues/1814. 273s warn( 273s 273s alignment/tests/test_tabular_msa.py::TestGapFrequencies::test_no_positions_relative 273s /usr/lib/python3/dist-packages/skbio/alignment/_tabular_msa.py:1648: RuntimeWarning: invalid value encountered in divide 273s gap_freqs /= length 273s 273s diversity/tests/test_block.py::ParallelBetaDiversity::test_block_beta_diversity 273s /usr/lib/python3/dist-packages/skbio/util/_warning.py:56: DeprecationWarning: partial_beta_diversity is deprecated as of 0.5.0. The return type is unstable. Developer caution is advised. The resulting DistanceMatrix object will include zeros when distance has not been calculated, and therefore can be misleading. 273s warn( 273s 273s diversity/tests/test_driver.py::BetaDiversityTests::test_available_metrics 273s diversity/tests/test_driver.py::BetaDiversityTests::test_qualitative_bug_issue_1549 273s diversity/tests/test_driver.py::BetaDiversityTests::test_qualitative_bug_issue_1549 273s /usr/lib/python3/dist-packages/scipy/spatial/distance.py:2322: DeprecationWarning: The sokalmichener metric is deprecated since SciPy 1.15.0 and will be removed in SciPy 1.17.0. Replace usage of 'sokalmichener(u, v)' with 'rogerstanimoto(u, v)'. 273s return pdist_fn(X, out=out, **kwargs) 273s 273s embedding/tests/test_protein.py: 3 warnings 273s sequence/tests/test_protein.py: 18 warnings 273s /usr/lib/python3/dist-packages/skbio/sequence/_protein.py:257: DeprecationWarning: `in1d` is deprecated. Use `np.isin` instead. 273s return np.in1d(self._bytes, self._stop_codes) 273s 273s metadata/tests/test_io.py: 10 warnings 273s /usr/lib/python3/dist-packages/skbio/metadata/io.py:411: FutureWarning: Downcasting behavior in `replace` is deprecated and will be removed in a future version. To retain the old behavior, explicitly call `result.infer_objects(copy=False)`. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` 273s series = series.replace("", np.nan) 273s 273s metadata/tests/test_io.py::TestSave::test_numeric_metadata_column_insdc_missing 273s metadata/tests/test_metadata_column.py::TestToSeries::test_encode_missing_true 273s metadata/tests/test_metadata_column.py::TestToDataframe::test_encode_missing_true 273s /usr/lib/python3/dist-packages/skbio/metadata/_metadata.py:1102: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise an error in a future version of pandas. Value '['missing']' has dtype incompatible with float64, please explicitly cast to a compatible dtype first. 273s series[missing.index] = missing 273s 273s metadata/tests/test_missing.py::TestISNDC::test_roundtrip_all_missing_object 273s metadata/tests/test_missing.py::TestOmitted::test_roundtrip_all_missing_object 273s /usr/lib/python3/dist-packages/skbio/metadata/tests/test_missing.py:53: FutureWarning: Mismatched null-like values nan and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. 273s pdt.assert_series_equal(missing, series.astype(object)) 273s 273s metadata/tests/test_missing.py::TestOmitted::test_roundtrip_bool 273s metadata/tests/test_missing.py::TestOmitted::test_roundtrip_string 273s /usr/lib/python3/dist-packages/skbio/metadata/tests/test_missing.py:31: FutureWarning: Mismatched null-like values nan and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise. 273s pdt.assert_series_equal(missing, series[1:].astype(object)) 273s 273s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 273s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 273s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 273s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 273s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 273s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 273s /usr/lib/python3/dist-packages/skbio/sequence/_grammared_sequence.py:639: DeprecationWarning: has_nondegenerates is deprecated as of 0.5.0 273s warn("has_nondegenerates is deprecated as of 0.5.0", DeprecationWarning) 273s 273s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 273s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 273s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 273s sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 273s sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 273s sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 273s sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 273s sequence/tests/test_protein.py::TestProtein::test_nondegenerate_chars 273s sequence/tests/test_protein.py::TestProtein::test_nondegenerate_chars 273s /usr/lib/python3/dist-packages/skbio/sequence/_grammared_sequence.py:313: DeprecationWarning: nondegenerate_chars is deprecated as of 0.5.0 273s warn("nondegenerate_chars is deprecated as of 0.5.0", DeprecationWarning) 273s 273s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 273s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 273s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 273s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 273s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 273s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 273s sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 273s /usr/lib/python3/dist-packages/skbio/sequence/_grammared_sequence.py:572: DeprecationWarning: nondenengerates is deprecated as of 0.5.0. 273s warn("nondenengerates is deprecated as of 0.5.0.", DeprecationWarning) 273s 273s sequence/tests/test_sequence.py::TestSequence::test_frequencies_empty_sequence 273s /usr/lib/python3/dist-packages/skbio/sequence/_sequence.py:1824: RuntimeWarning: invalid value encountered in divide 273s obs_counts = obs_counts / len(self) 273s 273s sequence/tests/test_sequence.py: 12 warnings 273s /usr/lib/python3/dist-packages/skbio/sequence/_sequence.py:2209: DeprecationWarning: `in1d` is deprecated. Use `np.isin` instead. 273s gaps = np.in1d(seq, gap_chars) 273s 273s stats/distance/tests/test_mantel.py::MantelTests::test_no_variation_pearson 273s /usr/lib/python3/dist-packages/skbio/stats/distance/_mantel.py:364: ConstantInputWarning: All values in data are exactly equal; results may not be reliable. 273s warnings.warn(ConstantInputWarning()) 273s 273s stats/distance/tests/test_mantel.py::MantelTests::test_no_variation_spearman 273s /usr/lib/python3/dist-packages/skbio/stats/distance/_mantel.py:483: ConstantInputWarning: All values in data are exactly equal; results may not be reliable. 273s warnings.warn(ConstantInputWarning()) 273s 273s stats/distance/tests/test_permdisp.py::testPERMDISP::test_call_via_series 273s stats/distance/tests/test_permdisp.py::testPERMDISP::test_call_via_series 273s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:146: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.006573677549550494 and the largest is 0.17668321589384073. 273s warn( 273s 273s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_eq_groups 273s stats/distance/tests/test_permdisp.py::testPERMDISP::test_no_permuations 273s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:146: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -13.541846544269621 and the largest is 16.587201374785895. 273s warn( 273s 273s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_mixedgroups 273s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_uneq_groups 273s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:146: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -15.629533932395201 and the largest is 20.903154277938906. 273s warn( 273s 273s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_null 273s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:190: RuntimeWarning: invalid value encountered in divide 273s proportion_explained = eigvals / sum_eigenvalues 273s 273s stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_null 273s /usr/lib/python3/dist-packages/scipy/stats/_axis_nan_policy.py:618: ConstantInputWarning: Each of the input arrays is constant; the F statistic is not defined or infinite 273s res = hypotest_fun_out(*samples, axis=axis, **kwds) 273s 273s stats/distance/tests/test_permdisp.py::testPERMDISP::test_confirm_betadispr_results 273s stats/distance/tests/test_permdisp.py::testPERMDISP::test_confirm_betadispr_results 273s /usr/lib/python3/dist-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:146: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.007758325147780638 and the largest is 2.7077929489469232. 273s warn( 273s 273s stats/ordination/tests/test_redundancy_analysis.py::TestRDAErrors::test_shape 273s /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) 273s return self.run(*args, **kwds) 273s 273s stats/tests/test_composition.py::CompositionTests::test_multiplicative_replacement 273s /usr/lib/python3/dist-packages/skbio/util/_warning.py:60: UserWarning: multiplicative_replacement is deprecated as of 0.6.0. 273s warn(f"{func.__name__} is deprecated as of {ver}.") 273s 273s stats/tests/test_composition.py::AncomTests::test_ancom_alternative_test 273s /usr/lib/python3/dist-packages/scipy/stats/_axis_nan_policy.py:586: RuntimeWarning: Precision loss occurred in moment calculation due to catastrophic cancellation. This occurs when the data are nearly identical. Results may be unreliable. 273s res = hypotest_fun_out(*samples, **kwds) 273s 273s stats/tests/test_composition.py::AncomTests::test_ancom_fail_multiple_groups 273s /usr/lib/python3/dist-packages/skbio/stats/composition.py:1628: DeprecationWarning: You are passing as positional arguments: axis. Please change your invocation to use keyword arguments. From SciPy 1.17.0, passing these as positional arguments will result in an error. 273s return test(*[x[cats == k] for k in cs]) 273s 273s stats/tests/test_composition.py::AncomTests::test_ancom_multiple_comparisons_deprecated 273s /usr/lib/python3/dist-packages/skbio/util/_warning.py:60: UserWarning: ancom is deprecated as of 0.6.0. 273s warn(f"{func.__name__} is deprecated as of {ver}.") 273s 273s stats/tests/test_composition.py::AncomTests::test_ancom_no_signal 273s /usr/lib/python3/dist-packages/scipy/stats/_axis_nan_policy.py:586: ConstantInputWarning: Each of the input arrays is constant; the F statistic is not defined or infinite 273s res = hypotest_fun_out(*samples, **kwds) 273s 273s stats/tests/test_composition.py::VLRTests::test_pairwise_vlr 273s /usr/lib/python3/dist-packages/skbio/stats/composition.py:947: RuntimeWarning: divide by zero encountered in log 273s X_log = np.log(mat) 273s 273s stats/tests/test_composition.py::VLRTests::test_pairwise_vlr 273s /usr/lib/python3/dist-packages/numpy/lib/_function_base_impl.py:2888: RuntimeWarning: invalid value encountered in subtract 273s X -= avg[:, None] 273s 273s stats/tests/test_composition.py::VLRTests::test_vlr 273s /usr/lib/python3/dist-packages/skbio/stats/composition.py:831: RuntimeWarning: divide by zero encountered in log 273s x = np.log(x) 273s 273s stats/tests/test_composition.py::VLRTests::test_vlr 273s /usr/lib/python3/dist-packages/numpy/_core/_methods.py:191: RuntimeWarning: invalid value encountered in subtract 273s x = asanyarray(arr - arrmean) 273s 273s stats/tests/test_gradient.py::GradientTests::test_weight_by_vector 273s /usr/lib/python3/dist-packages/skbio/stats/gradient.py:167: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise an error in a future version of pandas. Value '6.357142857142857' has dtype incompatible with int64, please explicitly cast to a compatible dtype first. 273s trajectories.loc[idx] = ( 273s 273s tree/tests/test_tree.py::TreeTests::test_root_at 273s /usr/lib/python3/dist-packages/skbio/tree/_tree.py:1327: FutureWarning: The default behavior of `root_at` is subject to change in 0.7.0. The new default behavior can be achieved by specifying `reset=True, branch_attrs=[], root_name=None`. 273s warn( 273s 273s tree/tests/test_tree.py::TreeTests::test_root_at 273s /usr/lib/python3/dist-packages/skbio/tree/_tree.py:776: FutureWarning: The default behavior of `unrooted_copy` is subject to change in 0.7.0. The new default behavior can be achieved by specifying `branch_attrs={"length", "support"}, root_name=None`. 273s warn( 273s 273s tree/tests/test_tree.py::TreeTests::test_root_at_midpoint 273s /usr/lib/python3/dist-packages/skbio/tree/_tree.py:1472: FutureWarning: The default behavior of `root_at_midpoint` is subject to change in 0.7.0. The new default behavior can be achieved by specifying `reset=True, branch_attrs=[], root_name=None`. 273s warn( 273s 273s tree/tests/test_tree.py::TreeTests::test_unrooted_deepcopy 273s /usr/lib/python3/dist-packages/skbio/util/_warning.py:56: DeprecationWarning: unrooted_deepcopy is deprecated as of 0.6.2. Use unrooted_copy instead. 273s warn( 273s 273s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 273s ========== 2763 passed, 30 skipped, 107 warnings in 92.34s (0:01:32) =========== 273s pybuild-autopkgtest: error: pybuild --autopkgtest --test-pytest -i python{version} -p "3.14 3.13" returned exit code 13 273s make: *** [/tmp/WkMGplt4a3/run:4: pybuild-autopkgtest] Error 25 273s pybuild-autopkgtest: error: /tmp/WkMGplt4a3/run pybuild-autopkgtest returned exit code 2 274s autopkgtest [11:56:12]: test pybuild-autopkgtest: -----------------------] 274s pybuild-autopkgtest FAIL non-zero exit status 25 274s autopkgtest [11:56:12]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 275s autopkgtest [11:56:13]: @@@@@@@@@@@@@@@@@@@@ summary 275s pybuild-autopkgtest FAIL non-zero exit status 25