0s autopkgtest [22:52:45]: starting date and time: 2026-02-03 22:52:45+0000 0s autopkgtest [22:52:45]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [22:52:45]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.rb90ju4m/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:setuptools --apt-upgrade python-pyani --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=setuptools/78.1.1-0.1build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-ppc64el-15.secgroup --name adt-resolute-ppc64el-python-pyani-20260203-225245-juju-7f2275-prod-proposed-migration-environment-2-c0155370-edf7-43a0-8cb8-c9fe096bbb6a --image adt/ubuntu-resolute-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-ppc64el-python-pyani-20260203-225245-juju-7f2275-prod-proposed-migration-environment-2-c0155370-edf7-43a0-8cb8-c9fe096bbb6a from image adt/ubuntu-resolute-ppc64el-server-20260203.img (UUID 36e1410e-0a72-4cd6-affd-580c415d80cb)... 53s autopkgtest [22:53:38]: testbed dpkg architecture: ppc64el 53s autopkgtest [22:53:38]: testbed apt version: 3.1.14 54s autopkgtest [22:53:39]: @@@@@@@@@@@@@@@@@@@@ test bed setup 54s autopkgtest [22:53:39]: testbed release detected to be: None 54s autopkgtest [22:53:39]: updating testbed package index (apt update) 55s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 55s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 55s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 55s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 55s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [232 kB] 55s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1337 kB] 55s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 55s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [27.9 kB] 55s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el Packages [284 kB] 55s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el Packages [1152 kB] 55s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse ppc64el Packages [17.8 kB] 55s Fetched 3181 kB in 1s (4508 kB/s) 56s Reading package lists... 57s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 57s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 57s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 57s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 58s Reading package lists... 58s Reading package lists... 58s Building dependency tree... 58s Reading state information... 58s Calculating upgrade... 58s The following packages will be upgraded: 58s libzstd1 python3-pkg-resources python3-setuptools zstd 58s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 58s Need to get 2080 kB of archives. 58s After this operation, 0 B of additional disk space will be used. 58s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el libzstd1 ppc64el 1.5.7+dfsg-3 [430 kB] 58s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-pkg-resources all 78.1.1-0.1build1 [144 kB] 58s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-setuptools all 78.1.1-0.1build1 [661 kB] 58s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el zstd ppc64el 1.5.7+dfsg-3 [845 kB] 59s dpkg-preconfigure: unable to re-open stdin: No such file or directory 59s Fetched 2080 kB in 0s (19.3 MB/s) 59s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 59s Preparing to unpack .../libzstd1_1.5.7+dfsg-3_ppc64el.deb ... 59s Unpacking libzstd1:ppc64el (1.5.7+dfsg-3) over (1.5.7+dfsg-2) ... 59s Setting up libzstd1:ppc64el (1.5.7+dfsg-3) ... 59s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 59s Preparing to unpack .../python3-pkg-resources_78.1.1-0.1build1_all.deb ... 60s Unpacking python3-pkg-resources (78.1.1-0.1build1) over (78.1.1-0.1) ... 60s Preparing to unpack .../python3-setuptools_78.1.1-0.1build1_all.deb ... 60s Unpacking python3-setuptools (78.1.1-0.1build1) over (78.1.1-0.1) ... 60s Preparing to unpack .../zstd_1.5.7+dfsg-3_ppc64el.deb ... 60s Unpacking zstd (1.5.7+dfsg-3) over (1.5.7+dfsg-2) ... 61s Setting up python3-pkg-resources (78.1.1-0.1build1) ... 61s Setting up python3-setuptools (78.1.1-0.1build1) ... 62s Setting up zstd (1.5.7+dfsg-3) ... 62s Processing triggers for man-db (2.13.1-1) ... 63s Processing triggers for libc-bin (2.42-2ubuntu4) ... 64s autopkgtest [22:53:49]: upgrading testbed (apt dist-upgrade and autopurge) 64s Reading package lists... 64s Building dependency tree... 64s Reading state information... 64s Calculating upgrade... 64s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 64s Reading package lists... 65s Building dependency tree... 65s Reading state information... 65s Solving dependencies... 65s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 67s autopkgtest [22:53:52]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:45:54 UTC 2026 67s autopkgtest [22:53:52]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pyani 70s Get:1 http://ftpmaster.internal/ubuntu resolute/universe python-pyani 0.2.13-1 (dsc) [1798 B] 70s Get:2 http://ftpmaster.internal/ubuntu resolute/universe python-pyani 0.2.13-1 (tar) [49.0 MB] 70s Get:3 http://ftpmaster.internal/ubuntu resolute/universe python-pyani 0.2.13-1 (diff) [11.2 kB] 71s gpgv: Signature made Tue Mar 18 07:26:50 2025 UTC 71s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 71s gpgv: issuer "nilesh@debian.org" 71s gpgv: Can't check signature: No public key 71s dpkg-source: warning: cannot verify inline signature for ./python-pyani_0.2.13-1.dsc: no acceptable signature found 73s autopkgtest [22:53:58]: testing package python-pyani version 0.2.13-1 73s autopkgtest [22:53:58]: build not needed 82s autopkgtest [22:54:07]: test run-unit-test: preparing testbed 82s Reading package lists... 83s Building dependency tree... 83s Reading state information... 83s Solving dependencies... 83s The following NEW packages will be installed: 83s fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 83s fonts-lyx fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 83s libfontenc1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 83s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 83s liblerc4 libmbedcrypto16 libmbedtls21 libmbedx509-7 libopenjp2-7 83s libpixman-1-0 libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 83s libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 83s libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 83s libxss1 libzopfli1 mummer ncbi-blast+ ncbi-data python-matplotlib-data 83s python3-all python3-biopython python3-brotli python3-cairo 83s python3-charset-normalizer python3-contourpy python3-cycler 83s python3-decorator python3-fonttools python3-freetype python3-iniconfig 83s python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 83s python3-mpmath python3-numpy python3-numpy-dev python3-pandas 83s python3-pandas-lib python3-pil python3-pil.imagetk python3-pluggy 83s python3-pyani python3-pytest python3-pytz python3-reportlab 83s python3-rlpycairo python3-scipy python3-seaborn python3-sympy python3-tk 83s python3-ufolib2 python3-zopfli python3.13-tk python3.14 python3.14-minimal 83s python3.14-tk sgml-base unicode-data w3c-sgml-lib x11-common 83s xfonts-encodings xfonts-utils xml-core 83s 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. 83s Need to get 136 MB of archives. 83s After this operation, 637 MB of additional disk space will be used. 83s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy-dev ppc64el 1:2.3.5+ds-3 [153 kB] 83s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el libblas3 ppc64el 3.12.1-7ubuntu1 [291 kB] 83s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgfortran5 ppc64el 15.2.0-12ubuntu1 [620 kB] 83s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblapack3 ppc64el 3.12.1-7ubuntu1 [2960 kB] 83s Get:5 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy ppc64el 1:2.3.5+ds-3 [5722 kB] 84s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpython3.14-minimal ppc64el 3.14.2-1 [921 kB] 84s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.14-minimal ppc64el 3.14.2-1 [2712 kB] 84s Get:8 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-dejavu-mono all 2.37-8build1 [502 kB] 84s Get:9 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-dejavu-core all 2.37-8build1 [834 kB] 84s Get:10 http://ftpmaster.internal/ubuntu resolute/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build2 [16.1 kB] 84s Get:11 http://ftpmaster.internal/ubuntu resolute/main ppc64el x11-common all 1:7.7+24ubuntu1 [22.4 kB] 84s Get:12 http://ftpmaster.internal/ubuntu resolute/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu3 [576 kB] 84s Get:13 http://ftpmaster.internal/ubuntu resolute/main ppc64el xfonts-utils ppc64el 1:7.7+7build1 [115 kB] 84s Get:14 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-urw-base35 all 20200910-8build1 [10.9 MB] 84s Get:15 http://ftpmaster.internal/ubuntu resolute/main ppc64el fontconfig-config ppc64el 2.17.1-3ubuntu1 [38.5 kB] 84s Get:16 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-dejavu-extra all 2.37-8build1 [1944 kB] 84s Get:17 http://ftpmaster.internal/ubuntu resolute/universe ppc64el fonts-lyx all 2.5.0~RC2-3 [171 kB] 84s Get:18 http://ftpmaster.internal/ubuntu resolute/main ppc64el libfontconfig1 ppc64el 2.17.1-3ubuntu1 [193 kB] 84s Get:19 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpixman-1-0 ppc64el 0.46.4-1 [347 kB] 84s Get:20 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-render0 ppc64el 1.17.0-2ubuntu1 [17.4 kB] 84s Get:21 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-shm0 ppc64el 1.17.0-2ubuntu1 [6072 B] 84s Get:22 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxrender1 ppc64el 1:0.9.12-1 [23.0 kB] 84s Get:23 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcairo2 ppc64el 1.18.4-3 [759 kB] 84s Get:24 http://ftpmaster.internal/ubuntu resolute/main ppc64el libdeflate0 ppc64el 1.23-2 [63.3 kB] 84s Get:25 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgomp1 ppc64el 15.2.0-12ubuntu1 [169 kB] 84s Get:26 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgraphite2-3 ppc64el 1.3.14-11ubuntu1 [85.3 kB] 84s Get:27 http://ftpmaster.internal/ubuntu resolute/main ppc64el libharfbuzz0b ppc64el 12.3.2-1 [663 kB] 84s Get:28 http://ftpmaster.internal/ubuntu resolute/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 84s Get:29 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-4ubuntu2 [215 kB] 84s Get:30 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 84s Get:31 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblcms2-2 ppc64el 2.17-1 [246 kB] 84s Get:32 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu2 [315 kB] 84s Get:33 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libmbedcrypto16 ppc64el 3.6.5-0.1ubuntu2 [329 kB] 84s Get:34 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libmbedx509-7 ppc64el 3.6.5-0.1ubuntu2 [43.7 kB] 84s Get:35 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libmbedtls21 ppc64el 3.6.5-0.1ubuntu2 [144 kB] 84s Get:36 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpython3.14-stdlib ppc64el 3.14.2-1 [2444 kB] 84s Get:37 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libqhull-r8.0 ppc64el 2020.2-8 [227 kB] 84s Get:38 http://ftpmaster.internal/ubuntu resolute/main ppc64el libraqm0 ppc64el 0.10.3-1 [19.6 kB] 84s Get:39 http://ftpmaster.internal/ubuntu resolute/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1build1 [24.7 kB] 84s Get:40 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtcl8.6 ppc64el 8.6.17+dfsg-1build1 [1239 kB] 84s Get:41 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu3 [37.1 kB] 84s Get:42 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebp7 ppc64el 1.5.0-0.1build1 [330 kB] 84s Get:43 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtiff6 ppc64el 4.7.0-3ubuntu3 [307 kB] 84s Get:44 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxft2 ppc64el 2.3.6-1build2 [61.6 kB] 84s Get:45 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxss1 ppc64el 1:1.2.3-1build4 [7470 B] 84s Get:46 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtk8.6 ppc64el 8.6.17-1 [968 kB] 84s Get:47 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebpdemux2 ppc64el 1.5.0-0.1build1 [14.8 kB] 84s Get:48 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebpmux3 ppc64el 1.5.0-0.1build1 [31.3 kB] 84s Get:49 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxslt1.1 ppc64el 1.1.43-0.3 [190 kB] 84s Get:50 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libzopfli1 ppc64el 1.0.3-3build1 [166 kB] 84s Get:51 http://ftpmaster.internal/ubuntu resolute/universe ppc64el mummer ppc64el 3.23+dfsg-8build1 [719 kB] 84s Get:52 http://ftpmaster.internal/ubuntu resolute/universe ppc64el ncbi-data all 6.1.20170106+dfsg2-7 [3969 kB] 84s Get:53 http://ftpmaster.internal/ubuntu resolute/universe ppc64el ncbi-blast+ ppc64el 2.16.0+ds-7 [16.1 MB] 85s Get:54 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 85s Get:55 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.14 ppc64el 3.14.2-1 [816 kB] 85s Get:56 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-all ppc64el 3.13.9-3 [890 B] 85s Get:57 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-charset-normalizer ppc64el 3.4.4-2 [175 kB] 85s Get:58 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.13-tk ppc64el 3.13.11-1 [108 kB] 85s Get:59 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.14-tk ppc64el 3.14.2-1 [109 kB] 85s Get:60 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-tk ppc64el 3.13.9-3 [11.2 kB] 85s Get:61 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pil.imagetk ppc64el 12.0.0-1ubuntu1 [10.1 kB] 85s Get:62 http://ftpmaster.internal/ubuntu resolute/main ppc64el libopenjp2-7 ppc64el 2.5.4-1 [251 kB] 85s Get:63 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-pil ppc64el 12.0.0-1ubuntu1 [645 kB] 85s Get:64 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-cairo ppc64el 1.27.0-2build1 [150 kB] 85s Get:65 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-freetype all 2.5.1-2 [92.2 kB] 85s Get:66 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-rlpycairo all 0.3.0-4 [9332 B] 85s Get:67 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-reportlab all 4.4.9-1 [1149 kB] 85s Get:68 http://ftpmaster.internal/ubuntu resolute/main ppc64el sgml-base all 1.31+nmu1 [11.0 kB] 85s Get:69 http://ftpmaster.internal/ubuntu resolute/main ppc64el xml-core all 0.19build1 [20.3 kB] 85s Get:70 http://ftpmaster.internal/ubuntu resolute/universe ppc64el w3c-sgml-lib all 1.3-3build1 [278 kB] 85s Get:71 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-biopython ppc64el 1.86+dfsg-1 [1726 kB] 85s Get:72 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-brotli ppc64el 1.1.0-2build6 [430 kB] 85s Get:73 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-contourpy ppc64el 1.3.3-1 [274 kB] 85s Get:74 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-cycler all 0.12.1-2 [9850 B] 85s Get:75 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-decorator all 5.2.1-2 [28.1 kB] 85s Get:76 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-lxml ppc64el 6.0.2-1 [2452 kB] 85s Get:77 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-lz4 ppc64el 4.4.5+dfsg-1 [29.0 kB] 85s Get:78 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-scipy ppc64el 1.16.3-4 [20.7 MB] 85s Get:79 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-mpmath all 1.3.0-2 [423 kB] 85s Get:80 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-sympy all 1.14.0-2 [4306 kB] 85s Get:81 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-ufolib2 all 0.18.1+dfsg1-1 [33.7 kB] 85s Get:82 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-zopfli ppc64el 0.4.0-1 [11.3 kB] 86s Get:83 http://ftpmaster.internal/ubuntu resolute/universe ppc64el unicode-data all 16.0.0-1build1 [9543 kB] 86s Get:84 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-fonttools ppc64el 4.61.1-3 [1784 kB] 86s Get:85 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-iniconfig all 2.1.0-2 [6962 B] 86s Get:86 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-kiwisolver ppc64el 1.4.10~rc0-1 [72.4 kB] 86s Get:87 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-matplotlib ppc64el 3.10.7+dfsg1-1 [17.2 MB] 86s Get:88 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pytz all 2025.2-5 [32.4 kB] 86s Get:89 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pandas-lib ppc64el 2.3.3+dfsg-3 [7213 kB] 86s Get:90 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pandas all 2.3.3+dfsg-3 [2948 kB] 86s Get:91 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pluggy all 1.6.0-2 [21.1 kB] 86s Get:92 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-seaborn all 0.13.2-6 [225 kB] 86s Get:93 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pyani ppc64el 0.2.13-1 [46.7 kB] 86s Get:94 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pytest all 9.0.2-2 [277 kB] 87s Fetched 136 MB in 4s (35.9 MB/s) 87s Selecting previously unselected package python3-numpy-dev:ppc64el. 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 87s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.5+ds-3_ppc64el.deb ... 87s Unpacking python3-numpy-dev:ppc64el (1:2.3.5+ds-3) ... 87s Selecting previously unselected package libblas3:ppc64el. 87s Preparing to unpack .../01-libblas3_3.12.1-7ubuntu1_ppc64el.deb ... 87s Unpacking libblas3:ppc64el (3.12.1-7ubuntu1) ... 87s Selecting previously unselected package libgfortran5:ppc64el. 87s Preparing to 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previously unselected package libzopfli1. 89s Preparing to unpack .../49-libzopfli1_1.0.3-3build1_ppc64el.deb ... 89s Unpacking libzopfli1 (1.0.3-3build1) ... 89s Selecting previously unselected package mummer. 89s Preparing to unpack .../50-mummer_3.23+dfsg-8build1_ppc64el.deb ... 89s Unpacking mummer (3.23+dfsg-8build1) ... 89s Selecting previously unselected package ncbi-data. 89s Preparing to unpack .../51-ncbi-data_6.1.20170106+dfsg2-7_all.deb ... 89s Unpacking ncbi-data (6.1.20170106+dfsg2-7) ... 89s Selecting previously unselected package ncbi-blast+. 89s Preparing to unpack .../52-ncbi-blast+_2.16.0+ds-7_ppc64el.deb ... 89s Unpacking ncbi-blast+ (2.16.0+ds-7) ... 89s Selecting previously unselected package python-matplotlib-data. 89s Preparing to unpack .../53-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 89s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 90s Selecting previously unselected package python3.14. 90s Preparing to unpack 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unselected package python3-pil.imagetk:ppc64el. 90s Preparing to unpack .../60-python3-pil.imagetk_12.0.0-1ubuntu1_ppc64el.deb ... 90s Unpacking python3-pil.imagetk:ppc64el (12.0.0-1ubuntu1) ... 90s Selecting previously unselected package libopenjp2-7:ppc64el. 90s Preparing to unpack .../61-libopenjp2-7_2.5.4-1_ppc64el.deb ... 90s Unpacking libopenjp2-7:ppc64el (2.5.4-1) ... 90s Selecting previously unselected package python3-pil:ppc64el. 90s Preparing to unpack .../62-python3-pil_12.0.0-1ubuntu1_ppc64el.deb ... 90s Unpacking python3-pil:ppc64el (12.0.0-1ubuntu1) ... 90s Selecting previously unselected package python3-cairo. 90s Preparing to unpack .../63-python3-cairo_1.27.0-2build1_ppc64el.deb ... 90s Unpacking python3-cairo (1.27.0-2build1) ... 90s Selecting previously unselected package python3-freetype. 90s Preparing to unpack .../64-python3-freetype_2.5.1-2_all.deb ... 90s Unpacking python3-freetype (2.5.1-2) ... 90s Selecting previously unselected package python3-rlpycairo. 90s 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unpack .../93-python3-pytest_9.0.2-2_all.deb ... 93s Unpacking python3-pytest (9.0.2-2) ... 93s Setting up libgraphite2-3:ppc64el (1.3.14-11ubuntu1) ... 93s Setting up liblcms2-2:ppc64el (2.17-1) ... 93s Setting up python3-iniconfig (2.1.0-2) ... 93s Setting up ncbi-data (6.1.20170106+dfsg2-7) ... 93s Setting up libpixman-1-0:ppc64el (0.46.4-1) ... 93s Setting up libsharpyuv0:ppc64el (1.5.0-0.1build1) ... 93s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu2) ... 93s Setting up libxrender1:ppc64el (1:0.9.12-1) ... 93s Setting up python3-lz4 (4.4.5+dfsg-1) ... 94s Setting up libxcb-render0:ppc64el (1.17.0-2ubuntu1) ... 94s Setting up python3-charset-normalizer (3.4.4-2) ... 94s Setting up fonts-lyx (2.5.0~RC2-3) ... 94s Setting up libpython3.14-minimal:ppc64el (3.14.2-1) ... 94s Setting up x11-common (1:7.7+24ubuntu1) ... 94s Setting up libdeflate0:ppc64el (1.23-2) ... 94s Setting up libqhull-r8.0:ppc64el (2020.2-8) ... 94s Setting up python3-pytz (2025.2-5) ... 94s Setting up libxcb-shm0:ppc64el (1.17.0-2ubuntu1) ... 94s Setting up libgomp1:ppc64el (15.2.0-12ubuntu1) ... 94s Setting up python3-freetype (2.5.1-2) ... 95s Setting up libjbig0:ppc64el (2.1-6.1ubuntu3) ... 95s Setting up unicode-data (16.0.0-1build1) ... 95s Setting up python3-decorator (5.2.1-2) ... 95s Setting up libfontenc1:ppc64el (1:1.1.8-1build2) ... 95s Setting up libblas3:ppc64el (3.12.1-7ubuntu1) ... 95s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 95s Setting up libzopfli1 (1.0.3-3build1) ... 95s Setting up python3-brotli (1.1.0-2build6) ... 95s Setting up xfonts-encodings (1:1.0.5-0ubuntu3) ... 95s Setting up python3-cycler (0.12.1-2) ... 95s Setting up libimagequant0:ppc64el (2.18.0-1build1) ... 95s Setting up fonts-dejavu-mono (2.37-8build1) ... 95s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 95s Setting up python3-numpy-dev:ppc64el (1:2.3.5+ds-3) ... 95s Setting up libtcl8.6:ppc64el (8.6.17+dfsg-1build1) ... 95s Setting up fonts-dejavu-core (2.37-8build1) ... 95s Setting up libjpeg-turbo8:ppc64el (2.1.5-4ubuntu2) ... 95s Setting up libgfortran5:ppc64el (15.2.0-12ubuntu1) ... 95s Setting up python3-pluggy (1.6.0-2) ... 95s Setting up libwebp7:ppc64el (1.5.0-0.1build1) ... 95s Setting up fonts-dejavu-extra (2.37-8build1) ... 95s Setting up libxslt1.1:ppc64el (1.1.43-0.3) ... 95s Setting up mummer (3.23+dfsg-8build1) ... 95s Setting up libopenjp2-7:ppc64el (2.5.4-1) ... 95s Setting up libharfbuzz0b:ppc64el (12.3.2-1) ... 95s Setting up sgml-base (1.31+nmu1) ... 95s Setting up libxss1:ppc64el (1:1.2.3-1build4) ... 95s Setting up libmbedcrypto16:ppc64el (3.6.5-0.1ubuntu2) ... 95s Setting up python3-mpmath (1.3.0-2) ... 96s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 96s Setting up libwebpmux3:ppc64el (1.5.0-0.1build1) ... 96s Setting up python3.14-minimal (3.14.2-1) ... 97s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 97s Setting up python3-sympy (1.14.0-2) ... 110s /usr/lib/python3/dist-packages/sympy/testing/runtests.py:283: SyntaxWarning: 'return' in a 'finally' block 110s return p.returncode 110s Setting up liblapack3:ppc64el (3.12.1-7ubuntu1) ... 110s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 110s Setting up libpython3.14-stdlib:ppc64el (3.14.2-1) ... 110s Setting up fontconfig-config (2.17.1-3ubuntu1) ... 110s Setting up python3-pytest (9.0.2-2) ... 111s Setting up libwebpdemux2:ppc64el (1.5.0-0.1build1) ... 111s Setting up xfonts-utils (1:7.7+7build1) ... 111s Setting up python3-zopfli (0.4.0-1) ... 111s Setting up libmbedx509-7:ppc64el (3.6.5-0.1ubuntu2) ... 111s Setting up libraqm0:ppc64el (0.10.3-1) ... 111s Setting up python3-numpy (1:2.3.5+ds-3) ... 115s Setting up libmbedtls21:ppc64el (3.6.5-0.1ubuntu2) ... 115s Setting up python3-lxml:ppc64el (6.0.2-1) ... 115s Setting up libtiff6:ppc64el (4.7.0-3ubuntu3) ... 115s Setting up xml-core (0.19build1) ... 115s Setting up python3-contourpy (1.3.3-1) ... 116s Setting up libfontconfig1:ppc64el (2.17.1-3ubuntu1) ... 116s Setting up python3.14 (3.14.2-1) ... 117s Setting up libxft2:ppc64el (2.3.6-1build2) ... 117s Setting up python3-scipy (1.16.3-4) ... 124s Setting up libtk8.6:ppc64el (8.6.17-1) ... 124s Setting up python3-pandas-lib:ppc64el (2.3.3+dfsg-3) ... 124s Setting up python3-all (3.13.9-3) ... 124s Setting up fonts-urw-base35 (20200910-8build1) ... 125s Setting up libcairo2:ppc64el (1.18.4-3) ... 125s Setting up python3.13-tk (3.13.11-1) ... 125s Setting up ncbi-blast+ (2.16.0+ds-7) ... 125s Setting up python3-pil:ppc64el (12.0.0-1ubuntu1) ... 125s Setting up python3-pandas (2.3.3+dfsg-3) ... 135s Setting up python3.14-tk (3.14.2-1) ... 135s Setting up python3-cairo (1.27.0-2build1) ... 136s Setting up python3-tk (3.13.9-3) ... 136s Setting up python3-pil.imagetk:ppc64el (12.0.0-1ubuntu1) ... 136s Setting up python3-rlpycairo (0.3.0-4) ... 136s Setting up python3-reportlab (4.4.9-1) ... 137s Setting up python3-fonttools (4.61.1-3) ... 139s Setting up python3-ufolib2 (0.18.1+dfsg1-1) ... 139s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 143s Setting up python3-seaborn (0.13.2-6) ... 143s Processing triggers for systemd (259-1ubuntu3) ... 143s Processing triggers for man-db (2.13.1-1) ... 145s Processing triggers for libc-bin (2.42-2ubuntu4) ... 145s Processing triggers for sgml-base (1.31+nmu1) ... 145s Setting up w3c-sgml-lib (1.3-3build1) ... 176s Setting up python3-biopython (1.86+dfsg-1) ... 178s Setting up python3-pyani (0.2.13-1) ... 179s autopkgtest [22:55:44]: test run-unit-test: [----------------------- 179s Testing with python3.14 in /tmp/autopkgtest.kp6Vrq/build.Utd/src: 179s ============================= test session starts ============================== 179s platform linux -- Python 3.13.11, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3 179s cachedir: .pytest_cache 179s rootdir: /tmp/autopkgtest.kp6Vrq/build.Utd/src 179s plugins: typeguard-4.4.4 182s collecting ... collected 56 items 182s 182s tests/test_anib.py::TestBLASTCmdline::test_blastall_dbjobdict SKIPPED [ 1%] 182s tests/test_anib.py::TestBLASTCmdline::test_blastall_generation SKIPPED [ 3%] 182s tests/test_anib.py::TestBLASTCmdline::test_blastall_graph SKIPPED (l...) [ 5%] 182s tests/test_anib.py::TestBLASTCmdline::test_blastdb_commands PASSED [ 7%] 182s tests/test_anib.py::TestBLASTCmdline::test_blastn_commands PASSED [ 8%] 182s tests/test_anib.py::TestBLASTCmdline::test_blastn_dbjobdict PASSED [ 10%] 182s tests/test_anib.py::TestBLASTCmdline::test_blastn_generation PASSED [ 12%] 185s tests/test_anib.py::TestBLASTCmdline::test_blastn_graph PASSED [ 14%] 185s tests/test_anib.py::TestBLASTCmdline::test_formatdb_generation SKIPPED [ 16%] 185s tests/test_anib.py::TestBLASTCmdline::test_legacy_blastdb_commands SKIPPED [ 17%] 185s tests/test_anib.py::TestBLASTCmdline::test_legacy_blastn_commands SKIPPED [ 19%] 185s tests/test_anib.py::TestBLASTCmdline::test_makeblastdb_generation PASSED [ 21%] 188s tests/test_anib.py::TestFragments::test_fragment_files PASSED [ 23%] 189s tests/test_anib.py::TestParsing::test_blastdir_processing PASSED [ 25%] 189s tests/test_anib.py::TestParsing::test_legacy_blastdir_processing SKIPPED [ 26%] 189s tests/test_anib.py::TestParsing::test_parse_blasttab SKIPPED (legacy...) [ 28%] 189s tests/test_anim.py::TestNUCmerCmdline::test_maxmatch_cmd_generation PASSED [ 30%] 189s tests/test_anim.py::TestNUCmerCmdline::test_multi_cmd_generation PASSED [ 32%] 189s tests/test_anim.py::TestNUCmerCmdline::test_nucmer_job_generation PASSED [ 33%] 189s tests/test_anim.py::TestNUCmerCmdline::test_single_cmd_generation PASSED [ 35%] 189s tests/test_anim.py::TestDeltafileProcessing::test_deltafile_import PASSED [ 37%] 189s tests/test_anim.py::TestDeltafileProcessing::test_process_deltadir PASSED [ 39%] 210s tests/test_concordance.py::TestConcordance::test_anib_concordance PASSED [ 41%] 210s tests/test_concordance.py::TestConcordance::test_aniblastall_concordance SKIPPED [ 42%] 219s tests/test_concordance.py::TestConcordance::test_anim_concordance PASSED [ 44%] 235s tests/test_concordance.py::TestConcordance::test_tetra_concordance PASSED [ 46%] 235s tests/test_dependencies.py::test_import_biopython PASSED [ 48%] 235s tests/test_dependencies.py::test_import_matplotlib PASSED [ 50%] 235s tests/test_dependencies.py::test_import_numpy PASSED [ 51%] 235s tests/test_dependencies.py::test_import_pandas PASSED [ 53%] 235s tests/test_dependencies.py::test_import_scipy PASSED [ 55%] 235s tests/test_dependencies.py::test_run_blast PASSED [ 57%] 235s tests/test_dependencies.py::test_run_blastall SKIPPED (unconditional...) [ 58%] 235s tests/test_dependencies.py::test_run_nucmer PASSED [ 60%] 236s tests/test_graphics.py::test_png_mpl PASSED [ 62%] 236s tests/test_graphics.py::test_svg_mpl PASSED [ 64%] 236s tests/test_graphics.py::test_pdf_mpl PASSED [ 66%] 237s tests/test_graphics.py::test_png_seaborn PASSED [ 67%] 237s tests/test_graphics.py::test_svg_seaborn PASSED [ 69%] 237s tests/test_graphics.py::test_pdf_seaborn PASSED [ 71%] 237s tests/test_jobs.py::TestJob::test_add_dependency PASSED [ 73%] 237s tests/test_jobs.py::TestJob::test_create_job PASSED [ 75%] 237s tests/test_jobs.py::TestJob::test_create_job_with_command PASSED [ 76%] 237s tests/test_jobs.py::TestJob::test_remove_dependency PASSED [ 78%] 237s tests/test_jobs.py::TestJobGroup::test_1d_jobgroup PASSED [ 80%] 237s tests/test_jobs.py::TestJobGroup::test_2d_jobgroup PASSED [ 82%] 237s tests/test_jobs.py::TestJobGroup::test_add_dependency PASSED [ 83%] 237s tests/test_jobs.py::TestJobGroup::test_create_jobgroup PASSED [ 85%] 237s tests/test_jobs.py::TestJobGroup::test_remove_dependency PASSED [ 87%] 237s tests/test_multiprocessing.py::TestMultiprocessing::test_cmdsets PASSED [ 89%] 308s tests/test_multiprocessing.py::TestMultiprocessing::test_dependency_graph_run PASSED [ 91%] 308s tests/test_multiprocessing.py::TestMultiprocessing::test_multiprocessing_run PASSED [ 92%] 308s tests/test_parsing.py::test_anim_delta PASSED [ 94%] 325s tests/test_tetra.py::TestTETRA::test_correlations PASSED [ 96%] 325s tests/test_tetra.py::TestTETRA::test_tetraclean PASSED [ 98%] 333s tests/test_tetra.py::TestTETRA::test_zscore PASSED [100%] 333s 333s =============================== warnings summary =============================== 333s tests/test_anib.py::TestParsing::test_blastdir_processing 333s tests/test_concordance.py::TestConcordance::test_anib_concordance 333s /usr/lib/python3/dist-packages/pyani/anib.py:420: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 333s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 333s A typical example is when you are setting values in a column of a DataFrame, like: 333s 333s df["col"][row_indexer] = value 333s 333s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 333s 333s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 333s 333s results.alignment_lengths[org][org] = length 333s 333s tests/test_anim.py::TestDeltafileProcessing::test_process_deltadir 333s tests/test_concordance.py::TestConcordance::test_anim_concordance 333s /usr/lib/python3/dist-packages/pyani/anim.py:195: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 333s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 333s A typical example is when you are setting values in a column of a DataFrame, like: 333s 333s df["col"][row_indexer] = value 333s 333s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 333s 333s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 333s 333s results.alignment_lengths[org][org] = length 333s 333s tests/test_concordance.py::TestConcordance::test_anib_concordance 333s tests/test_concordance.py::TestConcordance::test_anim_concordance 333s tests/test_concordance.py::TestConcordance::test_tetra_concordance 333s /tmp/autopkgtest.kp6Vrq/build.Utd/src/tests/test_concordance.py:102: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 333s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 333s A typical example is when you are setting values in a column of a DataFrame, like: 333s 333s df["col"][row_indexer] = value 333s 333s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 333s 333s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 333s 333s data[columns[idx]][row] = 1.0 333s 333s tests/test_concordance.py::TestConcordance::test_anib_concordance 333s tests/test_concordance.py::TestConcordance::test_anib_concordance 333s tests/test_concordance.py::TestConcordance::test_anib_concordance 333s tests/test_concordance.py::TestConcordance::test_anim_concordance 333s tests/test_concordance.py::TestConcordance::test_anim_concordance 333s tests/test_concordance.py::TestConcordance::test_anim_concordance 333s tests/test_concordance.py::TestConcordance::test_tetra_concordance 333s tests/test_concordance.py::TestConcordance::test_tetra_concordance 333s tests/test_concordance.py::TestConcordance::test_tetra_concordance 333s /tmp/autopkgtest.kp6Vrq/build.Utd/src/tests/test_concordance.py:98: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 333s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 333s A typical example is when you are setting values in a column of a DataFrame, like: 333s 333s df["col"][row_indexer] = value 333s 333s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 333s 333s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 333s 333s data[columns[idx]][row] = float(val) 333s 333s tests/test_concordance.py::TestConcordance::test_anib_concordance 333s tests/test_concordance.py::TestConcordance::test_anib_concordance 333s tests/test_concordance.py::TestConcordance::test_anim_concordance 333s tests/test_concordance.py::TestConcordance::test_anim_concordance 333s tests/test_concordance.py::TestConcordance::test_tetra_concordance 333s tests/test_concordance.py::TestConcordance::test_tetra_concordance 333s /tmp/autopkgtest.kp6Vrq/build.Utd/src/tests/test_concordance.py:100: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 333s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 333s A typical example is when you are setting values in a column of a DataFrame, like: 333s 333s df["col"][row_indexer] = value 333s 333s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 333s 333s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 333s 333s data[columns[idx]][row] = 100.0 333s 333s tests/test_concordance.py::TestConcordance::test_anib_concordance 333s /tmp/autopkgtest.kp6Vrq/build.Utd/src/tests/test_concordance.py:194: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` 333s lo_target = self.target["ANIb"].mask(self.target["ANIb"] >= 90).fillna(0) 333s 333s tests/test_concordance.py::TestConcordance::test_anib_concordance 333s /tmp/autopkgtest.kp6Vrq/build.Utd/src/tests/test_concordance.py:195: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` 333s hi_target = self.target["ANIb"].mask(self.target["ANIb"] < 90).fillna(0) 333s 333s tests/test_concordance.py::TestConcordance::test_tetra_concordance 333s tests/test_tetra.py::TestTETRA::test_correlations 333s /usr/lib/python3/dist-packages/pyani/tetra.py:156: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 333s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 333s A typical example is when you are setting values in a column of a DataFrame, like: 333s 333s df["col"][row_indexer] = value 333s 333s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 333s 333s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 333s 333s correlations[org1][org2] = diffprods / math.sqrt(zdiffs2[0] * zdiffs2[1]) 333s 333s tests/test_concordance.py::TestConcordance::test_tetra_concordance 333s tests/test_tetra.py::TestTETRA::test_correlations 333s /usr/lib/python3/dist-packages/pyani/tetra.py:157: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 333s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 333s A typical example is when you are setting values in a column of a DataFrame, like: 333s 333s df["col"][row_indexer] = value 333s 333s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 333s 333s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 333s 333s correlations[org2][org1] = correlations[org1][org2] 333s 333s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 333s =========== 46 passed, 10 skipped, 28 warnings in 153.59s (0:02:33) ============ 333s Testing with python3.13 in /tmp/autopkgtest.kp6Vrq/build.Utd/src: 334s ============================= test session starts ============================== 334s platform linux -- Python 3.13.11, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3 334s cachedir: .pytest_cache 334s rootdir: /tmp/autopkgtest.kp6Vrq/build.Utd/src 334s plugins: typeguard-4.4.4 335s collecting ... collected 56 items 335s 335s tests/test_anib.py::TestBLASTCmdline::test_blastall_dbjobdict SKIPPED [ 1%] 335s tests/test_anib.py::TestBLASTCmdline::test_blastall_generation SKIPPED [ 3%] 335s tests/test_anib.py::TestBLASTCmdline::test_blastall_graph SKIPPED (l...) [ 5%] 335s tests/test_anib.py::TestBLASTCmdline::test_blastdb_commands PASSED [ 7%] 335s tests/test_anib.py::TestBLASTCmdline::test_blastn_commands PASSED [ 8%] 335s tests/test_anib.py::TestBLASTCmdline::test_blastn_dbjobdict PASSED [ 10%] 335s tests/test_anib.py::TestBLASTCmdline::test_blastn_generation PASSED [ 12%] 338s tests/test_anib.py::TestBLASTCmdline::test_blastn_graph PASSED [ 14%] 338s tests/test_anib.py::TestBLASTCmdline::test_formatdb_generation SKIPPED [ 16%] 338s tests/test_anib.py::TestBLASTCmdline::test_legacy_blastdb_commands SKIPPED [ 17%] 338s tests/test_anib.py::TestBLASTCmdline::test_legacy_blastn_commands SKIPPED [ 19%] 338s tests/test_anib.py::TestBLASTCmdline::test_makeblastdb_generation PASSED [ 21%] 341s tests/test_anib.py::TestFragments::test_fragment_files PASSED [ 23%] 342s tests/test_anib.py::TestParsing::test_blastdir_processing PASSED [ 25%] 342s tests/test_anib.py::TestParsing::test_legacy_blastdir_processing SKIPPED [ 26%] 342s tests/test_anib.py::TestParsing::test_parse_blasttab SKIPPED (legacy...) [ 28%] 342s tests/test_anim.py::TestNUCmerCmdline::test_maxmatch_cmd_generation PASSED [ 30%] 342s tests/test_anim.py::TestNUCmerCmdline::test_multi_cmd_generation PASSED [ 32%] 342s tests/test_anim.py::TestNUCmerCmdline::test_nucmer_job_generation PASSED [ 33%] 342s tests/test_anim.py::TestNUCmerCmdline::test_single_cmd_generation PASSED [ 35%] 342s tests/test_anim.py::TestDeltafileProcessing::test_deltafile_import PASSED [ 37%] 342s tests/test_anim.py::TestDeltafileProcessing::test_process_deltadir PASSED [ 39%] 363s tests/test_concordance.py::TestConcordance::test_anib_concordance PASSED [ 41%] 363s tests/test_concordance.py::TestConcordance::test_aniblastall_concordance SKIPPED [ 42%] 372s tests/test_concordance.py::TestConcordance::test_anim_concordance PASSED [ 44%] 389s tests/test_concordance.py::TestConcordance::test_tetra_concordance PASSED [ 46%] 389s tests/test_dependencies.py::test_import_biopython PASSED [ 48%] 389s tests/test_dependencies.py::test_import_matplotlib PASSED [ 50%] 389s tests/test_dependencies.py::test_import_numpy PASSED [ 51%] 389s tests/test_dependencies.py::test_import_pandas PASSED [ 53%] 389s tests/test_dependencies.py::test_import_scipy PASSED [ 55%] 389s tests/test_dependencies.py::test_run_blast PASSED [ 57%] 389s tests/test_dependencies.py::test_run_blastall SKIPPED (unconditional...) [ 58%] 389s tests/test_dependencies.py::test_run_nucmer PASSED [ 60%] 389s tests/test_graphics.py::test_png_mpl PASSED [ 62%] 389s tests/test_graphics.py::test_svg_mpl PASSED [ 64%] 390s tests/test_graphics.py::test_pdf_mpl PASSED [ 66%] 390s tests/test_graphics.py::test_png_seaborn PASSED [ 67%] 391s tests/test_graphics.py::test_svg_seaborn PASSED [ 69%] 391s tests/test_graphics.py::test_pdf_seaborn PASSED [ 71%] 391s tests/test_jobs.py::TestJob::test_add_dependency PASSED [ 73%] 391s tests/test_jobs.py::TestJob::test_create_job PASSED [ 75%] 391s tests/test_jobs.py::TestJob::test_create_job_with_command PASSED [ 76%] 391s tests/test_jobs.py::TestJob::test_remove_dependency PASSED [ 78%] 391s tests/test_jobs.py::TestJobGroup::test_1d_jobgroup PASSED [ 80%] 391s tests/test_jobs.py::TestJobGroup::test_2d_jobgroup PASSED [ 82%] 391s tests/test_jobs.py::TestJobGroup::test_add_dependency PASSED [ 83%] 391s tests/test_jobs.py::TestJobGroup::test_create_jobgroup PASSED [ 85%] 391s tests/test_jobs.py::TestJobGroup::test_remove_dependency PASSED [ 87%] 391s tests/test_multiprocessing.py::TestMultiprocessing::test_cmdsets PASSED [ 89%] 462s tests/test_multiprocessing.py::TestMultiprocessing::test_dependency_graph_run PASSED [ 91%] 462s tests/test_multiprocessing.py::TestMultiprocessing::test_multiprocessing_run PASSED [ 92%] 462s tests/test_parsing.py::test_anim_delta PASSED [ 94%] 479s tests/test_tetra.py::TestTETRA::test_correlations PASSED [ 96%] 479s tests/test_tetra.py::TestTETRA::test_tetraclean PASSED [ 98%] 487s tests/test_tetra.py::TestTETRA::test_zscore PASSED [100%] 487s 487s =============================== warnings summary =============================== 487s tests/test_anib.py::TestParsing::test_blastdir_processing 487s tests/test_concordance.py::TestConcordance::test_anib_concordance 487s /usr/lib/python3/dist-packages/pyani/anib.py:420: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 487s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 487s A typical example is when you are setting values in a column of a DataFrame, like: 487s 487s df["col"][row_indexer] = value 487s 487s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 487s 487s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 487s 487s results.alignment_lengths[org][org] = length 487s 487s tests/test_anim.py::TestDeltafileProcessing::test_process_deltadir 487s tests/test_concordance.py::TestConcordance::test_anim_concordance 487s /usr/lib/python3/dist-packages/pyani/anim.py:195: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 487s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 487s A typical example is when you are setting values in a column of a DataFrame, like: 487s 487s df["col"][row_indexer] = value 487s 487s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 487s 487s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 487s 487s results.alignment_lengths[org][org] = length 487s 487s tests/test_concordance.py::TestConcordance::test_anib_concordance 487s tests/test_concordance.py::TestConcordance::test_anim_concordance 487s tests/test_concordance.py::TestConcordance::test_tetra_concordance 487s /tmp/autopkgtest.kp6Vrq/build.Utd/src/tests/test_concordance.py:102: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 487s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 487s A typical example is when you are setting values in a column of a DataFrame, like: 487s 487s df["col"][row_indexer] = value 487s 487s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 487s 487s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 487s 487s data[columns[idx]][row] = 1.0 487s 487s tests/test_concordance.py::TestConcordance::test_anib_concordance 487s tests/test_concordance.py::TestConcordance::test_anib_concordance 487s tests/test_concordance.py::TestConcordance::test_anib_concordance 487s tests/test_concordance.py::TestConcordance::test_anim_concordance 487s tests/test_concordance.py::TestConcordance::test_anim_concordance 487s tests/test_concordance.py::TestConcordance::test_anim_concordance 487s tests/test_concordance.py::TestConcordance::test_tetra_concordance 487s tests/test_concordance.py::TestConcordance::test_tetra_concordance 487s tests/test_concordance.py::TestConcordance::test_tetra_concordance 487s /tmp/autopkgtest.kp6Vrq/build.Utd/src/tests/test_concordance.py:98: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 487s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 487s A typical example is when you are setting values in a column of a DataFrame, like: 487s 487s df["col"][row_indexer] = value 487s 487s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 487s 487s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 487s 487s data[columns[idx]][row] = float(val) 487s 487s tests/test_concordance.py::TestConcordance::test_anib_concordance 487s tests/test_concordance.py::TestConcordance::test_anib_concordance 487s tests/test_concordance.py::TestConcordance::test_anim_concordance 487s tests/test_concordance.py::TestConcordance::test_anim_concordance 487s tests/test_concordance.py::TestConcordance::test_tetra_concordance 487s tests/test_concordance.py::TestConcordance::test_tetra_concordance 487s /tmp/autopkgtest.kp6Vrq/build.Utd/src/tests/test_concordance.py:100: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 487s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 487s A typical example is when you are setting values in a column of a DataFrame, like: 487s 487s df["col"][row_indexer] = value 487s 487s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 487s 487s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 487s 487s data[columns[idx]][row] = 100.0 487s 487s tests/test_concordance.py::TestConcordance::test_anib_concordance 487s /tmp/autopkgtest.kp6Vrq/build.Utd/src/tests/test_concordance.py:194: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` 487s lo_target = self.target["ANIb"].mask(self.target["ANIb"] >= 90).fillna(0) 487s 487s tests/test_concordance.py::TestConcordance::test_anib_concordance 487s /tmp/autopkgtest.kp6Vrq/build.Utd/src/tests/test_concordance.py:195: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` 487s hi_target = self.target["ANIb"].mask(self.target["ANIb"] < 90).fillna(0) 487s 487s tests/test_concordance.py::TestConcordance::test_tetra_concordance 487s tests/test_tetra.py::TestTETRA::test_correlations 487s /usr/lib/python3/dist-packages/pyani/tetra.py:156: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 487s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 487s A typical example is when you are setting values in a column of a DataFrame, like: 487s 487s df["col"][row_indexer] = value 487s 487s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 487s 487s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 487s 487s correlations[org1][org2] = diffprods / math.sqrt(zdiffs2[0] * zdiffs2[1]) 487s 487s tests/test_concordance.py::TestConcordance::test_tetra_concordance 487s tests/test_tetra.py::TestTETRA::test_correlations 487s /usr/lib/python3/dist-packages/pyani/tetra.py:157: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 487s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 487s A typical example is when you are setting values in a column of a DataFrame, like: 487s 487s df["col"][row_indexer] = value 487s 487s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 487s 487s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 487s 487s correlations[org2][org1] = correlations[org1][org2] 487s 487s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 487s =========== 46 passed, 10 skipped, 28 warnings in 153.17s (0:02:33) ============ 488s autopkgtest [23:00:53]: test run-unit-test: -----------------------] 488s autopkgtest [23:00:53]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 488s run-unit-test PASS 489s autopkgtest [23:00:54]: test autodep8-python3: preparing testbed 508s Creating nova instance adt-resolute-ppc64el-python-pyani-20260203-225245-juju-7f2275-prod-proposed-migration-environment-2-c0155370-edf7-43a0-8cb8-c9fe096bbb6a from image adt/ubuntu-resolute-ppc64el-server-20260203.img (UUID 36e1410e-0a72-4cd6-affd-580c415d80cb)... 555s autopkgtest [23:02:00]: testbed dpkg architecture: ppc64el 556s autopkgtest [23:02:01]: testbed apt version: 3.1.14 556s autopkgtest [23:02:01]: @@@@@@@@@@@@@@@@@@@@ test bed setup 556s autopkgtest [23:02:01]: testbed release detected to be: resolute 557s autopkgtest [23:02:02]: updating testbed package index (apt update) 557s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 557s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 557s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 557s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 557s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 557s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [27.9 kB] 557s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [232 kB] 557s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1337 kB] 557s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el Packages [284 kB] 557s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el Packages [1152 kB] 557s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse ppc64el Packages [17.8 kB] 558s Fetched 3181 kB in 1s (4476 kB/s) 558s Reading package lists... 559s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 559s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 559s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 559s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 560s Reading package lists... 560s Reading package lists... 560s Building dependency tree... 560s Reading state information... 560s Calculating upgrade... 560s The following packages will be upgraded: 560s libzstd1 python3-pkg-resources python3-setuptools zstd 560s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 560s Need to get 2080 kB of archives. 560s After this operation, 0 B of additional disk space will be used. 560s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el libzstd1 ppc64el 1.5.7+dfsg-3 [430 kB] 560s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-pkg-resources all 78.1.1-0.1build1 [144 kB] 561s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-setuptools all 78.1.1-0.1build1 [661 kB] 561s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el zstd ppc64el 1.5.7+dfsg-3 [845 kB] 561s dpkg-preconfigure: unable to re-open stdin: No such file or directory 561s Fetched 2080 kB in 0s (8350 kB/s) 561s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 561s Preparing to unpack .../libzstd1_1.5.7+dfsg-3_ppc64el.deb ... 561s Unpacking libzstd1:ppc64el (1.5.7+dfsg-3) over (1.5.7+dfsg-2) ... 562s Setting up libzstd1:ppc64el (1.5.7+dfsg-3) ... 562s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 562s Preparing to unpack .../python3-pkg-resources_78.1.1-0.1build1_all.deb ... 562s Unpacking python3-pkg-resources (78.1.1-0.1build1) over (78.1.1-0.1) ... 562s Preparing to unpack .../python3-setuptools_78.1.1-0.1build1_all.deb ... 562s Unpacking python3-setuptools (78.1.1-0.1build1) over (78.1.1-0.1) ... 562s Preparing to unpack .../zstd_1.5.7+dfsg-3_ppc64el.deb ... 562s Unpacking zstd (1.5.7+dfsg-3) over (1.5.7+dfsg-2) ... 562s Setting up python3-pkg-resources (78.1.1-0.1build1) ... 563s Setting up python3-setuptools (78.1.1-0.1build1) ... 563s Setting up zstd (1.5.7+dfsg-3) ... 564s Processing triggers for man-db (2.13.1-1) ... 565s Processing triggers for libc-bin (2.42-2ubuntu4) ... 566s autopkgtest [23:02:11]: upgrading testbed (apt dist-upgrade and autopurge) 566s Reading package lists... 566s Building dependency tree... 566s Reading state information... 566s Calculating upgrade... 566s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 566s Reading package lists... 567s Building dependency tree... 567s Reading state information... 567s Solving dependencies... 567s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 569s Reading package lists... 570s Building dependency tree... 570s Reading state information... 570s Solving dependencies... 570s The following NEW packages will be installed: 570s fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 570s fonts-lyx fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 570s libfontenc1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 570s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 570s liblerc4 libmbedcrypto16 libmbedtls21 libmbedx509-7 libopenjp2-7 570s libpixman-1-0 libpython3.14-minimal libpython3.14-stdlib libqhull-r8.0 570s libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 570s libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 570s libxss1 libzopfli1 mummer ncbi-blast+ ncbi-data python-matplotlib-data 570s python3-all python3-biopython python3-brotli python3-cairo 570s python3-charset-normalizer python3-contourpy python3-cycler 570s python3-decorator python3-fonttools python3-freetype python3-kiwisolver 570s python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-numpy 570s python3-numpy-dev python3-pandas python3-pandas-lib python3-pil 570s python3-pil.imagetk python3-pyani python3-pytz python3-reportlab 570s python3-rlpycairo python3-scipy python3-seaborn python3-sympy python3-tk 570s python3-ufolib2 python3-zopfli python3.13-tk python3.14 python3.14-minimal 570s python3.14-tk sgml-base unicode-data w3c-sgml-lib x11-common 570s xfonts-encodings xfonts-utils xml-core 570s 0 upgraded, 91 newly installed, 0 to remove and 0 not upgraded. 570s Need to get 135 MB of archives. 570s After this operation, 635 MB of additional disk space will be used. 570s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy-dev ppc64el 1:2.3.5+ds-3 [153 kB] 570s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el libblas3 ppc64el 3.12.1-7ubuntu1 [291 kB] 570s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgfortran5 ppc64el 15.2.0-12ubuntu1 [620 kB] 570s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblapack3 ppc64el 3.12.1-7ubuntu1 [2960 kB] 570s Get:5 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy ppc64el 1:2.3.5+ds-3 [5722 kB] 570s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpython3.14-minimal ppc64el 3.14.2-1 [921 kB] 570s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.14-minimal ppc64el 3.14.2-1 [2712 kB] 570s Get:8 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-dejavu-mono all 2.37-8build1 [502 kB] 570s Get:9 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-dejavu-core all 2.37-8build1 [834 kB] 570s Get:10 http://ftpmaster.internal/ubuntu resolute/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build2 [16.1 kB] 570s Get:11 http://ftpmaster.internal/ubuntu resolute/main ppc64el x11-common all 1:7.7+24ubuntu1 [22.4 kB] 570s Get:12 http://ftpmaster.internal/ubuntu resolute/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu3 [576 kB] 570s Get:13 http://ftpmaster.internal/ubuntu resolute/main ppc64el xfonts-utils ppc64el 1:7.7+7build1 [115 kB] 570s Get:14 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-urw-base35 all 20200910-8build1 [10.9 MB] 571s Get:15 http://ftpmaster.internal/ubuntu resolute/main ppc64el fontconfig-config ppc64el 2.17.1-3ubuntu1 [38.5 kB] 571s Get:16 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-dejavu-extra all 2.37-8build1 [1944 kB] 571s Get:17 http://ftpmaster.internal/ubuntu resolute/universe ppc64el fonts-lyx all 2.5.0~RC2-3 [171 kB] 571s Get:18 http://ftpmaster.internal/ubuntu resolute/main ppc64el libfontconfig1 ppc64el 2.17.1-3ubuntu1 [193 kB] 571s Get:19 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpixman-1-0 ppc64el 0.46.4-1 [347 kB] 571s Get:20 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-render0 ppc64el 1.17.0-2ubuntu1 [17.4 kB] 571s Get:21 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-shm0 ppc64el 1.17.0-2ubuntu1 [6072 B] 571s Get:22 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxrender1 ppc64el 1:0.9.12-1 [23.0 kB] 571s Get:23 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcairo2 ppc64el 1.18.4-3 [759 kB] 571s Get:24 http://ftpmaster.internal/ubuntu resolute/main ppc64el libdeflate0 ppc64el 1.23-2 [63.3 kB] 571s Get:25 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgomp1 ppc64el 15.2.0-12ubuntu1 [169 kB] 571s Get:26 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgraphite2-3 ppc64el 1.3.14-11ubuntu1 [85.3 kB] 571s Get:27 http://ftpmaster.internal/ubuntu resolute/main ppc64el libharfbuzz0b ppc64el 12.3.2-1 [663 kB] 571s Get:28 http://ftpmaster.internal/ubuntu resolute/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 571s Get:29 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-4ubuntu2 [215 kB] 571s Get:30 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 571s Get:31 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblcms2-2 ppc64el 2.17-1 [246 kB] 571s Get:32 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu2 [315 kB] 571s Get:33 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libmbedcrypto16 ppc64el 3.6.5-0.1ubuntu2 [329 kB] 571s Get:34 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libmbedx509-7 ppc64el 3.6.5-0.1ubuntu2 [43.7 kB] 571s Get:35 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libmbedtls21 ppc64el 3.6.5-0.1ubuntu2 [144 kB] 571s Get:36 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpython3.14-stdlib ppc64el 3.14.2-1 [2444 kB] 571s Get:37 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libqhull-r8.0 ppc64el 2020.2-8 [227 kB] 571s Get:38 http://ftpmaster.internal/ubuntu resolute/main ppc64el libraqm0 ppc64el 0.10.3-1 [19.6 kB] 571s Get:39 http://ftpmaster.internal/ubuntu resolute/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1build1 [24.7 kB] 571s Get:40 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtcl8.6 ppc64el 8.6.17+dfsg-1build1 [1239 kB] 571s Get:41 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu3 [37.1 kB] 571s Get:42 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebp7 ppc64el 1.5.0-0.1build1 [330 kB] 571s Get:43 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtiff6 ppc64el 4.7.0-3ubuntu3 [307 kB] 571s Get:44 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxft2 ppc64el 2.3.6-1build2 [61.6 kB] 571s Get:45 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxss1 ppc64el 1:1.2.3-1build4 [7470 B] 571s Get:46 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtk8.6 ppc64el 8.6.17-1 [968 kB] 571s Get:47 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebpdemux2 ppc64el 1.5.0-0.1build1 [14.8 kB] 571s Get:48 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebpmux3 ppc64el 1.5.0-0.1build1 [31.3 kB] 571s Get:49 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxslt1.1 ppc64el 1.1.43-0.3 [190 kB] 571s Get:50 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libzopfli1 ppc64el 1.0.3-3build1 [166 kB] 571s Get:51 http://ftpmaster.internal/ubuntu resolute/universe ppc64el mummer ppc64el 3.23+dfsg-8build1 [719 kB] 571s Get:52 http://ftpmaster.internal/ubuntu resolute/universe ppc64el ncbi-data all 6.1.20170106+dfsg2-7 [3969 kB] 572s Get:53 http://ftpmaster.internal/ubuntu resolute/universe ppc64el ncbi-blast+ ppc64el 2.16.0+ds-7 [16.1 MB] 572s Get:54 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 572s Get:55 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.14 ppc64el 3.14.2-1 [816 kB] 572s Get:56 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-all ppc64el 3.13.9-3 [890 B] 572s Get:57 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-charset-normalizer ppc64el 3.4.4-2 [175 kB] 572s Get:58 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.13-tk ppc64el 3.13.11-1 [108 kB] 572s Get:59 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.14-tk ppc64el 3.14.2-1 [109 kB] 572s Get:60 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-tk ppc64el 3.13.9-3 [11.2 kB] 572s Get:61 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pil.imagetk ppc64el 12.0.0-1ubuntu1 [10.1 kB] 572s Get:62 http://ftpmaster.internal/ubuntu resolute/main ppc64el libopenjp2-7 ppc64el 2.5.4-1 [251 kB] 572s Get:63 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-pil ppc64el 12.0.0-1ubuntu1 [645 kB] 572s Get:64 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-cairo ppc64el 1.27.0-2build1 [150 kB] 572s Get:65 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-freetype all 2.5.1-2 [92.2 kB] 572s Get:66 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-rlpycairo all 0.3.0-4 [9332 B] 572s Get:67 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-reportlab all 4.4.9-1 [1149 kB] 572s Get:68 http://ftpmaster.internal/ubuntu resolute/main ppc64el sgml-base all 1.31+nmu1 [11.0 kB] 572s Get:69 http://ftpmaster.internal/ubuntu resolute/main ppc64el xml-core all 0.19build1 [20.3 kB] 572s Get:70 http://ftpmaster.internal/ubuntu resolute/universe ppc64el w3c-sgml-lib all 1.3-3build1 [278 kB] 572s Get:71 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-biopython ppc64el 1.86+dfsg-1 [1726 kB] 572s Get:72 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-brotli ppc64el 1.1.0-2build6 [430 kB] 572s Get:73 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-contourpy ppc64el 1.3.3-1 [274 kB] 572s Get:74 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-cycler all 0.12.1-2 [9850 B] 572s Get:75 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-decorator all 5.2.1-2 [28.1 kB] 572s Get:76 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-lxml ppc64el 6.0.2-1 [2452 kB] 572s Get:77 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-lz4 ppc64el 4.4.5+dfsg-1 [29.0 kB] 572s Get:78 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-scipy ppc64el 1.16.3-4 [20.7 MB] 573s Get:79 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-mpmath all 1.3.0-2 [423 kB] 573s Get:80 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-sympy all 1.14.0-2 [4306 kB] 573s Get:81 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-ufolib2 all 0.18.1+dfsg1-1 [33.7 kB] 573s Get:82 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-zopfli ppc64el 0.4.0-1 [11.3 kB] 573s Get:83 http://ftpmaster.internal/ubuntu resolute/universe ppc64el unicode-data all 16.0.0-1build1 [9543 kB] 573s Get:84 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-fonttools ppc64el 4.61.1-3 [1784 kB] 573s Get:85 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-kiwisolver ppc64el 1.4.10~rc0-1 [72.4 kB] 573s Get:86 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-matplotlib ppc64el 3.10.7+dfsg1-1 [17.2 MB] 573s Get:87 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pytz all 2025.2-5 [32.4 kB] 573s Get:88 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pandas-lib ppc64el 2.3.3+dfsg-3 [7213 kB] 574s Get:89 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pandas all 2.3.3+dfsg-3 [2948 kB] 574s Get:90 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-seaborn all 0.13.2-6 [225 kB] 574s Get:91 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pyani ppc64el 0.2.13-1 [46.7 kB] 574s Fetched 135 MB in 4s (36.0 MB/s) 574s Selecting previously unselected package python3-numpy-dev:ppc64el. 574s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 574s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.5+ds-3_ppc64el.deb ... 574s Unpacking python3-numpy-dev:ppc64el (1:2.3.5+ds-3) ... 574s Selecting previously unselected package libblas3:ppc64el. 574s Preparing to unpack .../01-libblas3_3.12.1-7ubuntu1_ppc64el.deb ... 574s Unpacking libblas3:ppc64el (3.12.1-7ubuntu1) ... 574s Selecting previously unselected package libgfortran5:ppc64el. 574s Preparing to unpack .../02-libgfortran5_15.2.0-12ubuntu1_ppc64el.deb ... 574s Unpacking libgfortran5:ppc64el (15.2.0-12ubuntu1) ... 574s Selecting previously unselected package liblapack3:ppc64el. 574s Preparing to unpack .../03-liblapack3_3.12.1-7ubuntu1_ppc64el.deb ... 574s Unpacking liblapack3:ppc64el (3.12.1-7ubuntu1) ... 574s Selecting previously unselected package python3-numpy. 574s Preparing to unpack .../04-python3-numpy_1%3a2.3.5+ds-3_ppc64el.deb ... 574s Unpacking python3-numpy (1:2.3.5+ds-3) ... 574s Selecting previously unselected package libpython3.14-minimal:ppc64el. 574s Preparing to unpack .../05-libpython3.14-minimal_3.14.2-1_ppc64el.deb ... 574s Unpacking libpython3.14-minimal:ppc64el (3.14.2-1) ... 574s Selecting previously unselected package python3.14-minimal. 574s Preparing to unpack .../06-python3.14-minimal_3.14.2-1_ppc64el.deb ... 574s Unpacking python3.14-minimal (3.14.2-1) ... 574s Selecting previously unselected package fonts-dejavu-mono. 574s Preparing to unpack .../07-fonts-dejavu-mono_2.37-8build1_all.deb ... 574s Unpacking fonts-dejavu-mono (2.37-8build1) ... 574s Selecting previously unselected package fonts-dejavu-core. 574s Preparing to unpack .../08-fonts-dejavu-core_2.37-8build1_all.deb ... 574s Unpacking fonts-dejavu-core (2.37-8build1) ... 575s Selecting previously unselected package libfontenc1:ppc64el. 575s Preparing to unpack .../09-libfontenc1_1%3a1.1.8-1build2_ppc64el.deb ... 575s Unpacking libfontenc1:ppc64el (1:1.1.8-1build2) ... 575s Selecting previously unselected package x11-common. 575s Preparing to unpack .../10-x11-common_1%3a7.7+24ubuntu1_all.deb ... 575s Unpacking x11-common (1:7.7+24ubuntu1) ... 575s Selecting previously unselected package xfonts-encodings. 575s Preparing to unpack .../11-xfonts-encodings_1%3a1.0.5-0ubuntu3_all.deb ... 575s Unpacking xfonts-encodings (1:1.0.5-0ubuntu3) ... 575s Selecting previously unselected package xfonts-utils. 575s Preparing to unpack .../12-xfonts-utils_1%3a7.7+7build1_ppc64el.deb ... 575s Unpacking xfonts-utils (1:7.7+7build1) ... 575s Selecting previously unselected package fonts-urw-base35. 575s Preparing to unpack .../13-fonts-urw-base35_20200910-8build1_all.deb ... 575s Unpacking fonts-urw-base35 (20200910-8build1) ... 575s Selecting previously unselected package fontconfig-config. 575s Preparing to unpack .../14-fontconfig-config_2.17.1-3ubuntu1_ppc64el.deb ... 575s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 575s Selecting previously unselected package fonts-dejavu-extra. 575s Preparing to unpack .../15-fonts-dejavu-extra_2.37-8build1_all.deb ... 575s Unpacking fonts-dejavu-extra (2.37-8build1) ... 575s Selecting previously unselected package fonts-lyx. 575s Preparing to unpack .../16-fonts-lyx_2.5.0~RC2-3_all.deb ... 575s Unpacking fonts-lyx (2.5.0~RC2-3) ... 575s Selecting previously unselected package libfontconfig1:ppc64el. 575s Preparing to unpack .../17-libfontconfig1_2.17.1-3ubuntu1_ppc64el.deb ... 575s Unpacking libfontconfig1:ppc64el (2.17.1-3ubuntu1) ... 575s Selecting previously unselected package libpixman-1-0:ppc64el. 575s Preparing to unpack .../18-libpixman-1-0_0.46.4-1_ppc64el.deb ... 575s Unpacking libpixman-1-0:ppc64el (0.46.4-1) ... 575s Selecting previously unselected package libxcb-render0:ppc64el. 575s Preparing to unpack .../19-libxcb-render0_1.17.0-2ubuntu1_ppc64el.deb ... 575s Unpacking libxcb-render0:ppc64el (1.17.0-2ubuntu1) ... 575s Selecting previously unselected package libxcb-shm0:ppc64el. 575s Preparing to unpack .../20-libxcb-shm0_1.17.0-2ubuntu1_ppc64el.deb ... 575s Unpacking libxcb-shm0:ppc64el (1.17.0-2ubuntu1) ... 575s Selecting previously unselected package libxrender1:ppc64el. 575s Preparing to unpack .../21-libxrender1_1%3a0.9.12-1_ppc64el.deb ... 575s Unpacking libxrender1:ppc64el (1:0.9.12-1) ... 575s Selecting previously unselected package libcairo2:ppc64el. 575s Preparing to unpack .../22-libcairo2_1.18.4-3_ppc64el.deb ... 575s Unpacking libcairo2:ppc64el (1.18.4-3) ... 575s Selecting previously unselected package libdeflate0:ppc64el. 575s Preparing to unpack .../23-libdeflate0_1.23-2_ppc64el.deb ... 575s Unpacking libdeflate0:ppc64el (1.23-2) ... 575s Selecting previously unselected package libgomp1:ppc64el. 575s Preparing to unpack .../24-libgomp1_15.2.0-12ubuntu1_ppc64el.deb ... 575s Unpacking libgomp1:ppc64el (15.2.0-12ubuntu1) ... 575s Selecting previously unselected package libgraphite2-3:ppc64el. 575s Preparing to unpack .../25-libgraphite2-3_1.3.14-11ubuntu1_ppc64el.deb ... 575s Unpacking libgraphite2-3:ppc64el (1.3.14-11ubuntu1) ... 575s Selecting previously unselected package libharfbuzz0b:ppc64el. 575s Preparing to unpack .../26-libharfbuzz0b_12.3.2-1_ppc64el.deb ... 575s Unpacking libharfbuzz0b:ppc64el (12.3.2-1) ... 575s Selecting previously unselected package libimagequant0:ppc64el. 575s Preparing to unpack .../27-libimagequant0_2.18.0-1build1_ppc64el.deb ... 575s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 575s Selecting previously unselected package libjpeg-turbo8:ppc64el. 575s Preparing to unpack .../28-libjpeg-turbo8_2.1.5-4ubuntu2_ppc64el.deb ... 575s Unpacking libjpeg-turbo8:ppc64el (2.1.5-4ubuntu2) ... 575s Selecting previously unselected package libjpeg8:ppc64el. 575s Preparing to unpack .../29-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 575s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 575s Selecting previously unselected package liblcms2-2:ppc64el. 575s Preparing to unpack .../30-liblcms2-2_2.17-1_ppc64el.deb ... 575s Unpacking liblcms2-2:ppc64el (2.17-1) ... 575s Selecting previously unselected package liblerc4:ppc64el. 575s Preparing to unpack .../31-liblerc4_4.0.0+ds-5ubuntu2_ppc64el.deb ... 575s Unpacking liblerc4:ppc64el (4.0.0+ds-5ubuntu2) ... 575s Selecting previously unselected package libmbedcrypto16:ppc64el. 575s Preparing to unpack .../32-libmbedcrypto16_3.6.5-0.1ubuntu2_ppc64el.deb ... 575s Unpacking libmbedcrypto16:ppc64el (3.6.5-0.1ubuntu2) ... 575s Selecting previously unselected package libmbedx509-7:ppc64el. 575s Preparing to unpack .../33-libmbedx509-7_3.6.5-0.1ubuntu2_ppc64el.deb ... 575s Unpacking libmbedx509-7:ppc64el (3.6.5-0.1ubuntu2) ... 575s Selecting previously unselected package libmbedtls21:ppc64el. 575s Preparing to unpack .../34-libmbedtls21_3.6.5-0.1ubuntu2_ppc64el.deb ... 575s Unpacking libmbedtls21:ppc64el (3.6.5-0.1ubuntu2) ... 576s Selecting previously unselected package libpython3.14-stdlib:ppc64el. 576s Preparing to unpack .../35-libpython3.14-stdlib_3.14.2-1_ppc64el.deb ... 576s Unpacking libpython3.14-stdlib:ppc64el (3.14.2-1) ... 576s Selecting previously unselected package libqhull-r8.0:ppc64el. 576s Preparing to unpack .../36-libqhull-r8.0_2020.2-8_ppc64el.deb ... 576s Unpacking libqhull-r8.0:ppc64el (2020.2-8) ... 576s Selecting previously unselected package libraqm0:ppc64el. 576s Preparing to unpack .../37-libraqm0_0.10.3-1_ppc64el.deb ... 576s Unpacking libraqm0:ppc64el (0.10.3-1) ... 576s Selecting previously unselected package libsharpyuv0:ppc64el. 576s Preparing to unpack .../38-libsharpyuv0_1.5.0-0.1build1_ppc64el.deb ... 576s Unpacking libsharpyuv0:ppc64el (1.5.0-0.1build1) ... 576s Selecting previously unselected package libtcl8.6:ppc64el. 576s Preparing to unpack .../39-libtcl8.6_8.6.17+dfsg-1build1_ppc64el.deb ... 576s Unpacking libtcl8.6:ppc64el (8.6.17+dfsg-1build1) ... 576s Selecting previously unselected package libjbig0:ppc64el. 576s Preparing to unpack .../40-libjbig0_2.1-6.1ubuntu3_ppc64el.deb ... 576s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu3) ... 576s Selecting previously unselected package libwebp7:ppc64el. 576s Preparing to unpack .../41-libwebp7_1.5.0-0.1build1_ppc64el.deb ... 576s Unpacking libwebp7:ppc64el (1.5.0-0.1build1) ... 576s Selecting previously unselected package libtiff6:ppc64el. 576s Preparing to unpack .../42-libtiff6_4.7.0-3ubuntu3_ppc64el.deb ... 576s Unpacking libtiff6:ppc64el (4.7.0-3ubuntu3) ... 576s Selecting previously unselected package libxft2:ppc64el. 576s Preparing to unpack .../43-libxft2_2.3.6-1build2_ppc64el.deb ... 576s Unpacking libxft2:ppc64el (2.3.6-1build2) ... 576s Selecting previously unselected package libxss1:ppc64el. 576s Preparing to unpack .../44-libxss1_1%3a1.2.3-1build4_ppc64el.deb ... 576s Unpacking libxss1:ppc64el (1:1.2.3-1build4) ... 576s Selecting previously unselected package libtk8.6:ppc64el. 576s Preparing to unpack .../45-libtk8.6_8.6.17-1_ppc64el.deb ... 576s Unpacking libtk8.6:ppc64el (8.6.17-1) ... 576s Selecting previously unselected package libwebpdemux2:ppc64el. 576s Preparing to unpack .../46-libwebpdemux2_1.5.0-0.1build1_ppc64el.deb ... 576s Unpacking libwebpdemux2:ppc64el (1.5.0-0.1build1) ... 576s Selecting previously unselected package libwebpmux3:ppc64el. 576s Preparing to unpack .../47-libwebpmux3_1.5.0-0.1build1_ppc64el.deb ... 576s Unpacking libwebpmux3:ppc64el (1.5.0-0.1build1) ... 576s Selecting previously unselected package libxslt1.1:ppc64el. 576s Preparing to unpack .../48-libxslt1.1_1.1.43-0.3_ppc64el.deb ... 576s Unpacking libxslt1.1:ppc64el (1.1.43-0.3) ... 576s Selecting previously unselected package libzopfli1. 576s Preparing to unpack .../49-libzopfli1_1.0.3-3build1_ppc64el.deb ... 576s Unpacking libzopfli1 (1.0.3-3build1) ... 576s Selecting previously unselected package mummer. 576s Preparing to unpack .../50-mummer_3.23+dfsg-8build1_ppc64el.deb ... 576s Unpacking mummer (3.23+dfsg-8build1) ... 576s Selecting previously unselected package ncbi-data. 576s Preparing to unpack .../51-ncbi-data_6.1.20170106+dfsg2-7_all.deb ... 576s Unpacking ncbi-data (6.1.20170106+dfsg2-7) ... 576s Selecting previously unselected package ncbi-blast+. 576s Preparing to unpack .../52-ncbi-blast+_2.16.0+ds-7_ppc64el.deb ... 576s Unpacking ncbi-blast+ (2.16.0+ds-7) ... 576s Selecting previously unselected package python-matplotlib-data. 576s Preparing to unpack .../53-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 576s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 576s Selecting previously unselected package python3.14. 576s Preparing to unpack .../54-python3.14_3.14.2-1_ppc64el.deb ... 576s Unpacking python3.14 (3.14.2-1) ... 577s Selecting previously unselected package python3-all. 577s Preparing to unpack .../55-python3-all_3.13.9-3_ppc64el.deb ... 577s Unpacking python3-all (3.13.9-3) ... 577s Selecting previously unselected package python3-charset-normalizer. 577s Preparing to unpack .../56-python3-charset-normalizer_3.4.4-2_ppc64el.deb ... 577s Unpacking python3-charset-normalizer (3.4.4-2) ... 577s Selecting previously unselected package python3.13-tk. 577s Preparing to unpack .../57-python3.13-tk_3.13.11-1_ppc64el.deb ... 577s Unpacking python3.13-tk (3.13.11-1) ... 577s Selecting previously unselected package python3.14-tk. 577s Preparing to unpack .../58-python3.14-tk_3.14.2-1_ppc64el.deb ... 577s Unpacking python3.14-tk (3.14.2-1) ... 577s Selecting previously unselected package python3-tk. 577s Preparing to unpack .../59-python3-tk_3.13.9-3_ppc64el.deb ... 577s Unpacking python3-tk (3.13.9-3) ... 577s Selecting previously unselected package python3-pil.imagetk:ppc64el. 577s Preparing to unpack .../60-python3-pil.imagetk_12.0.0-1ubuntu1_ppc64el.deb ... 577s Unpacking python3-pil.imagetk:ppc64el (12.0.0-1ubuntu1) ... 577s Selecting previously unselected package libopenjp2-7:ppc64el. 577s Preparing to unpack .../61-libopenjp2-7_2.5.4-1_ppc64el.deb ... 577s Unpacking libopenjp2-7:ppc64el (2.5.4-1) ... 577s Selecting previously unselected package python3-pil:ppc64el. 577s Preparing to unpack .../62-python3-pil_12.0.0-1ubuntu1_ppc64el.deb ... 577s Unpacking python3-pil:ppc64el (12.0.0-1ubuntu1) ... 577s Selecting previously unselected package python3-cairo. 577s Preparing to unpack .../63-python3-cairo_1.27.0-2build1_ppc64el.deb ... 577s Unpacking python3-cairo (1.27.0-2build1) ... 577s Selecting previously unselected package python3-freetype. 577s Preparing to unpack .../64-python3-freetype_2.5.1-2_all.deb ... 577s Unpacking python3-freetype (2.5.1-2) ... 577s Selecting previously unselected package python3-rlpycairo. 577s Preparing to unpack .../65-python3-rlpycairo_0.3.0-4_all.deb ... 577s Unpacking python3-rlpycairo (0.3.0-4) ... 577s Selecting previously unselected package python3-reportlab. 577s Preparing to unpack .../66-python3-reportlab_4.4.9-1_all.deb ... 577s Unpacking python3-reportlab (4.4.9-1) ... 577s Selecting previously unselected package sgml-base. 577s Preparing to unpack .../67-sgml-base_1.31+nmu1_all.deb ... 577s Unpacking sgml-base (1.31+nmu1) ... 577s Selecting previously unselected package xml-core. 577s Preparing to unpack .../68-xml-core_0.19build1_all.deb ... 577s Unpacking xml-core (0.19build1) ... 577s Selecting previously unselected package w3c-sgml-lib. 577s Preparing to unpack .../69-w3c-sgml-lib_1.3-3build1_all.deb ... 577s Unpacking w3c-sgml-lib (1.3-3build1) ... 577s Selecting previously unselected package python3-biopython. 577s Preparing to unpack .../70-python3-biopython_1.86+dfsg-1_ppc64el.deb ... 577s Unpacking python3-biopython (1.86+dfsg-1) ... 577s Selecting previously unselected package python3-brotli. 577s Preparing to unpack .../71-python3-brotli_1.1.0-2build6_ppc64el.deb ... 577s Unpacking python3-brotli (1.1.0-2build6) ... 577s Selecting previously unselected package python3-contourpy. 577s Preparing to unpack .../72-python3-contourpy_1.3.3-1_ppc64el.deb ... 577s Unpacking python3-contourpy (1.3.3-1) ... 577s Selecting previously unselected package python3-cycler. 577s Preparing to unpack .../73-python3-cycler_0.12.1-2_all.deb ... 577s Unpacking python3-cycler (0.12.1-2) ... 577s Selecting previously unselected package python3-decorator. 577s Preparing to unpack .../74-python3-decorator_5.2.1-2_all.deb ... 577s Unpacking python3-decorator (5.2.1-2) ... 577s Selecting previously unselected package python3-lxml:ppc64el. 577s Preparing to unpack .../75-python3-lxml_6.0.2-1_ppc64el.deb ... 577s Unpacking python3-lxml:ppc64el (6.0.2-1) ... 577s Selecting previously unselected package python3-lz4. 577s Preparing to unpack .../76-python3-lz4_4.4.5+dfsg-1_ppc64el.deb ... 577s Unpacking python3-lz4 (4.4.5+dfsg-1) ... 577s Selecting previously unselected package python3-scipy. 577s Preparing to unpack .../77-python3-scipy_1.16.3-4_ppc64el.deb ... 577s Unpacking python3-scipy (1.16.3-4) ... 578s Selecting previously unselected package python3-mpmath. 578s Preparing to unpack .../78-python3-mpmath_1.3.0-2_all.deb ... 578s Unpacking python3-mpmath (1.3.0-2) ... 578s Selecting previously unselected package python3-sympy. 578s Preparing to unpack .../79-python3-sympy_1.14.0-2_all.deb ... 578s Unpacking python3-sympy (1.14.0-2) ... 578s Selecting previously unselected package python3-ufolib2. 578s Preparing to unpack .../80-python3-ufolib2_0.18.1+dfsg1-1_all.deb ... 578s Unpacking python3-ufolib2 (0.18.1+dfsg1-1) ... 578s Selecting previously unselected package python3-zopfli. 578s Preparing to unpack .../81-python3-zopfli_0.4.0-1_ppc64el.deb ... 578s Unpacking python3-zopfli (0.4.0-1) ... 578s Selecting previously unselected package unicode-data. 578s Preparing to unpack .../82-unicode-data_16.0.0-1build1_all.deb ... 578s Unpacking unicode-data (16.0.0-1build1) ... 579s Selecting previously unselected package python3-fonttools. 579s Preparing to unpack .../83-python3-fonttools_4.61.1-3_ppc64el.deb ... 579s Unpacking python3-fonttools (4.61.1-3) ... 579s Selecting previously unselected package python3-kiwisolver. 579s Preparing to unpack .../84-python3-kiwisolver_1.4.10~rc0-1_ppc64el.deb ... 579s Unpacking python3-kiwisolver (1.4.10~rc0-1) ... 579s Selecting previously unselected package python3-matplotlib. 579s Preparing to unpack .../85-python3-matplotlib_3.10.7+dfsg1-1_ppc64el.deb ... 579s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 579s Selecting previously unselected package python3-pytz. 579s Preparing to unpack .../86-python3-pytz_2025.2-5_all.deb ... 579s Unpacking python3-pytz (2025.2-5) ... 579s Selecting previously unselected package python3-pandas-lib:ppc64el. 579s Preparing to unpack .../87-python3-pandas-lib_2.3.3+dfsg-3_ppc64el.deb ... 579s Unpacking python3-pandas-lib:ppc64el (2.3.3+dfsg-3) ... 580s Selecting previously unselected package python3-pandas. 580s Preparing to unpack .../88-python3-pandas_2.3.3+dfsg-3_all.deb ... 580s Unpacking python3-pandas (2.3.3+dfsg-3) ... 580s Selecting previously unselected package python3-seaborn. 580s Preparing to unpack .../89-python3-seaborn_0.13.2-6_all.deb ... 580s Unpacking python3-seaborn (0.13.2-6) ... 580s Selecting previously unselected package python3-pyani. 580s Preparing to unpack .../90-python3-pyani_0.2.13-1_ppc64el.deb ... 580s Unpacking python3-pyani (0.2.13-1) ... 580s Setting up libgraphite2-3:ppc64el (1.3.14-11ubuntu1) ... 580s Setting up liblcms2-2:ppc64el (2.17-1) ... 580s Setting up ncbi-data (6.1.20170106+dfsg2-7) ... 580s Setting up libpixman-1-0:ppc64el (0.46.4-1) ... 580s Setting up libsharpyuv0:ppc64el (1.5.0-0.1build1) ... 580s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu2) ... 580s Setting up libxrender1:ppc64el (1:0.9.12-1) ... 580s Setting up python3-lz4 (4.4.5+dfsg-1) ... 580s Setting up libxcb-render0:ppc64el (1.17.0-2ubuntu1) ... 580s Setting up python3-charset-normalizer (3.4.4-2) ... 580s Setting up fonts-lyx (2.5.0~RC2-3) ... 580s Setting up libpython3.14-minimal:ppc64el (3.14.2-1) ... 580s Setting up x11-common (1:7.7+24ubuntu1) ... 581s Setting up libdeflate0:ppc64el (1.23-2) ... 581s Setting up libqhull-r8.0:ppc64el (2020.2-8) ... 581s Setting up python3-pytz (2025.2-5) ... 581s Setting up libxcb-shm0:ppc64el (1.17.0-2ubuntu1) ... 581s Setting up libgomp1:ppc64el (15.2.0-12ubuntu1) ... 581s Setting up python3-freetype (2.5.1-2) ... 581s Setting up libjbig0:ppc64el (2.1-6.1ubuntu3) ... 581s Setting up unicode-data (16.0.0-1build1) ... 581s Setting up python3-decorator (5.2.1-2) ... 581s Setting up libfontenc1:ppc64el (1:1.1.8-1build2) ... 581s Setting up libblas3:ppc64el (3.12.1-7ubuntu1) ... 581s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 581s Setting up libzopfli1 (1.0.3-3build1) ... 581s Setting up python3-brotli (1.1.0-2build6) ... 581s Setting up xfonts-encodings (1:1.0.5-0ubuntu3) ... 581s Setting up python3-cycler (0.12.1-2) ... 582s Setting up libimagequant0:ppc64el (2.18.0-1build1) ... 582s Setting up fonts-dejavu-mono (2.37-8build1) ... 582s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 582s Setting up python3-numpy-dev:ppc64el (1:2.3.5+ds-3) ... 582s Setting up libtcl8.6:ppc64el (8.6.17+dfsg-1build1) ... 582s Setting up fonts-dejavu-core (2.37-8build1) ... 582s Setting up libjpeg-turbo8:ppc64el (2.1.5-4ubuntu2) ... 582s Setting up libgfortran5:ppc64el (15.2.0-12ubuntu1) ... 582s Setting up libwebp7:ppc64el (1.5.0-0.1build1) ... 582s Setting up fonts-dejavu-extra (2.37-8build1) ... 582s Setting up libxslt1.1:ppc64el (1.1.43-0.3) ... 582s Setting up mummer (3.23+dfsg-8build1) ... 582s Setting up libopenjp2-7:ppc64el (2.5.4-1) ... 582s Setting up libharfbuzz0b:ppc64el (12.3.2-1) ... 582s Setting up sgml-base (1.31+nmu1) ... 582s Setting up libxss1:ppc64el (1:1.2.3-1build4) ... 582s Setting up libmbedcrypto16:ppc64el (3.6.5-0.1ubuntu2) ... 582s Setting up python3-mpmath (1.3.0-2) ... 583s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 583s Setting up libwebpmux3:ppc64el (1.5.0-0.1build1) ... 583s Setting up python3.14-minimal (3.14.2-1) ... 584s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 584s Setting up python3-sympy (1.14.0-2) ... 595s /usr/lib/python3/dist-packages/sympy/testing/runtests.py:283: SyntaxWarning: 'return' in a 'finally' block 595s return p.returncode 596s Setting up liblapack3:ppc64el (3.12.1-7ubuntu1) ... 596s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 596s Setting up libpython3.14-stdlib:ppc64el (3.14.2-1) ... 596s Setting up fontconfig-config (2.17.1-3ubuntu1) ... 596s Setting up libwebpdemux2:ppc64el (1.5.0-0.1build1) ... 596s Setting up xfonts-utils (1:7.7+7build1) ... 596s Setting up python3-zopfli (0.4.0-1) ... 596s Setting up libmbedx509-7:ppc64el (3.6.5-0.1ubuntu2) ... 596s Setting up libraqm0:ppc64el (0.10.3-1) ... 596s Setting up python3-numpy (1:2.3.5+ds-3) ... 600s Setting up libmbedtls21:ppc64el (3.6.5-0.1ubuntu2) ... 600s Setting up python3-lxml:ppc64el (6.0.2-1) ... 600s Setting up libtiff6:ppc64el (4.7.0-3ubuntu3) ... 600s Setting up xml-core (0.19build1) ... 600s Setting up python3-contourpy (1.3.3-1) ... 600s Setting up libfontconfig1:ppc64el (2.17.1-3ubuntu1) ... 600s Setting up python3.14 (3.14.2-1) ... 601s Setting up libxft2:ppc64el (2.3.6-1build2) ... 601s Setting up python3-scipy (1.16.3-4) ... 609s Setting up libtk8.6:ppc64el (8.6.17-1) ... 609s Setting up python3-pandas-lib:ppc64el (2.3.3+dfsg-3) ... 609s Setting up python3-all (3.13.9-3) ... 609s Setting up fonts-urw-base35 (20200910-8build1) ... 609s Setting up libcairo2:ppc64el (1.18.4-3) ... 609s Setting up python3.13-tk (3.13.11-1) ... 609s Setting up ncbi-blast+ (2.16.0+ds-7) ... 609s Setting up python3-pil:ppc64el (12.0.0-1ubuntu1) ... 610s Setting up python3-pandas (2.3.3+dfsg-3) ... 619s Setting up python3.14-tk (3.14.2-1) ... 620s Setting up python3-cairo (1.27.0-2build1) ... 620s Setting up python3-tk (3.13.9-3) ... 620s Setting up python3-pil.imagetk:ppc64el (12.0.0-1ubuntu1) ... 620s Setting up python3-rlpycairo (0.3.0-4) ... 620s Setting up python3-reportlab (4.4.9-1) ... 621s Setting up python3-fonttools (4.61.1-3) ... 623s Setting up python3-ufolib2 (0.18.1+dfsg1-1) ... 623s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 626s Setting up python3-seaborn (0.13.2-6) ... 627s Processing triggers for systemd (259-1ubuntu3) ... 627s Processing triggers for man-db (2.13.1-1) ... 628s Processing triggers for libc-bin (2.42-2ubuntu4) ... 628s Processing triggers for sgml-base (1.31+nmu1) ... 628s Setting up w3c-sgml-lib (1.3-3build1) ... 657s Setting up python3-biopython (1.86+dfsg-1) ... 659s Setting up python3-pyani (0.2.13-1) ... 667s autopkgtest [23:03:52]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import pyani; print(pyani)" ; done 667s autopkgtest [23:03:52]: test autodep8-python3: [----------------------- 668s Testing with python3.14: 668s 668s Testing with python3.13: 668s 668s autopkgtest [23:03:53]: test autodep8-python3: -----------------------] 668s autodep8-python3 PASS (superficial) 668s autopkgtest [23:03:53]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 669s autopkgtest [23:03:54]: @@@@@@@@@@@@@@@@@@@@ summary 669s run-unit-test PASS 669s autodep8-python3 PASS (superficial)