0s autopkgtest [11:29:54]: starting date and time: 2025-11-04 11:29:54+0000 0s autopkgtest [11:29:54]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [11:29:54]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.oorw3kgh/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest --apt-upgrade python-gffutils --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pytest/8.4.2-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-ppc64el-8.secgroup --name adt-resolute-ppc64el-python-gffutils-20251104-112953-juju-7f2275-prod-proposed-migration-environment-15-0986f9cd-45dd-426d-aa74-24bac378d950 --image adt/ubuntu-resolute-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 9s Creating nova instance adt-resolute-ppc64el-python-gffutils-20251104-112953-juju-7f2275-prod-proposed-migration-environment-15-0986f9cd-45dd-426d-aa74-24bac378d950 from image adt/ubuntu-resolute-ppc64el-server-20251104.img (UUID 3b85278a-e278-4751-897d-5e4a1759ee05)... 252s autopkgtest [11:34:06]: testbed dpkg architecture: ppc64el 252s autopkgtest [11:34:06]: testbed apt version: 3.1.11 253s autopkgtest [11:34:07]: @@@@@@@@@@@@@@@@@@@@ test bed setup 253s autopkgtest [11:34:07]: testbed release detected to be: None 254s autopkgtest [11:34:08]: updating testbed package index (apt update) 254s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 254s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 254s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 254s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 254s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1009 kB] 255s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [23.7 kB] 255s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 255s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [79.5 kB] 255s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el Packages [114 kB] 255s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted ppc64el Packages [940 B] 255s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el Packages [602 kB] 255s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse ppc64el Packages [12.5 kB] 255s Fetched 1939 kB in 1s (1486 kB/s) 256s Reading package lists... 257s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 257s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 257s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 257s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 258s Reading package lists... 258s Reading package lists... 258s Building dependency tree... 258s Reading state information... 258s Calculating upgrade... 258s The following packages will be upgraded: 258s base-passwd liblz4-1 258s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 258s Need to get 147 kB of archives. 258s After this operation, 9216 B of additional disk space will be used. 258s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el base-passwd ppc64el 3.6.8 [56.6 kB] 258s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblz4-1 ppc64el 1.10.0-6 [90.5 kB] 259s dpkg-preconfigure: unable to re-open stdin: No such file or directory 259s Fetched 147 kB in 0s (305 kB/s) 259s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76579 files and directories currently installed.) 259s Preparing to unpack .../base-passwd_3.6.8_ppc64el.deb ... 259s Unpacking base-passwd (3.6.8) over (3.6.7) ... 259s Setting up base-passwd (3.6.8) ... 260s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76579 files and directories currently installed.) 260s Preparing to unpack .../liblz4-1_1.10.0-6_ppc64el.deb ... 260s Unpacking liblz4-1:ppc64el (1.10.0-6) over (1.10.0-4build1) ... 260s Setting up liblz4-1:ppc64el (1.10.0-6) ... 260s Processing triggers for man-db (2.13.1-1) ... 262s Processing triggers for libc-bin (2.42-0ubuntu3) ... 262s autopkgtest [11:34:16]: upgrading testbed (apt dist-upgrade and autopurge) 262s Reading package lists... 262s Building dependency tree... 262s Reading state information... 263s Calculating upgrade... 263s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 263s Reading package lists... 263s Building dependency tree... 263s Reading state information... 263s Solving dependencies... 263s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 266s autopkgtest [11:34:20]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:02:41 UTC 2025 266s autopkgtest [11:34:20]: @@@@@@@@@@@@@@@@@@@@ apt-source python-gffutils 268s Get:1 http://ftpmaster.internal/ubuntu resolute/universe python-gffutils 0.13-3 (dsc) [2331 B] 268s Get:2 http://ftpmaster.internal/ubuntu resolute/universe python-gffutils 0.13-3 (tar) [1560 kB] 268s Get:3 http://ftpmaster.internal/ubuntu resolute/universe python-gffutils 0.13-3 (diff) [5460 B] 268s gpgv: Signature made Sat Aug 23 17:09:16 2025 UTC 268s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 268s gpgv: issuer "tchet@debian.org" 268s gpgv: Can't check signature: No public key 268s dpkg-source: warning: cannot verify inline signature for ./python-gffutils_0.13-3.dsc: no acceptable signature found 269s autopkgtest [11:34:23]: testing package python-gffutils version 0.13-3 269s autopkgtest [11:34:23]: build not needed 270s autopkgtest [11:34:24]: test run-unit-test: preparing testbed 270s Reading package lists... 270s Building dependency tree... 270s Reading state information... 270s Solving dependencies... 270s The following NEW packages will be installed: 270s fontconfig-config fonts-urw-base35 libblas3 libcairo2 libdeflate0 270s libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3 270s libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 270s liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 270s libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 270s libxrender1 python3-argcomplete python3-argh python3-biopython python3-cairo 270s python3-charset-normalizer python3-freetype python3-gffutils 270s python3-iniconfig python3-numpy python3-numpy-dev python3-packaging 270s python3-pil python3-pluggy python3-pyfaidx python3-pytest python3-reportlab 270s python3-rlpycairo sgml-base w3c-sgml-lib x11-common xfonts-encodings 270s xfonts-utils xml-core 271s 0 upgraded, 52 newly installed, 0 to remove and 0 not upgraded. 271s Need to get 30.6 MB of archives. 271s After this operation, 107 MB of additional disk space will be used. 271s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy-dev ppc64el 1:2.2.4+ds-1ubuntu1 [153 kB] 271s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el libblas3 ppc64el 3.12.1-7 [291 kB] 271s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgfortran5 ppc64el 15.2.0-7ubuntu1 [620 kB] 271s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblapack3 ppc64el 3.12.1-7 [2960 kB] 272s Get:5 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy ppc64el 1:2.2.4+ds-1ubuntu1 [4887 kB] 272s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build1 [15.8 kB] 272s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el x11-common all 1:7.7+24ubuntu1 [22.4 kB] 272s Get:8 http://ftpmaster.internal/ubuntu resolute/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 272s Get:9 http://ftpmaster.internal/ubuntu resolute/main ppc64el xfonts-utils ppc64el 1:7.7+7 [114 kB] 272s Get:10 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB] 276s Get:11 http://ftpmaster.internal/ubuntu resolute/main ppc64el fontconfig-config ppc64el 2.15.0-2.3ubuntu1 [38.1 kB] 276s Get:12 http://ftpmaster.internal/ubuntu resolute/main ppc64el libfontconfig1 ppc64el 2.15.0-2.3ubuntu1 [188 kB] 276s Get:13 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpixman-1-0 ppc64el 0.46.4-1 [347 kB] 277s Get:14 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-render0 ppc64el 1.17.0-2build1 [17.2 kB] 277s Get:15 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-shm0 ppc64el 1.17.0-2build1 [6078 B] 277s Get:16 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxrender1 ppc64el 1:0.9.12-1 [23.0 kB] 277s Get:17 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcairo2 ppc64el 1.18.4-1build1 [759 kB] 277s Get:18 http://ftpmaster.internal/ubuntu resolute/main ppc64el libdeflate0 ppc64el 1.23-2 [63.3 kB] 277s Get:19 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgomp1 ppc64el 15.2.0-7ubuntu1 [169 kB] 277s Get:20 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 277s Get:21 http://ftpmaster.internal/ubuntu resolute/main ppc64el libharfbuzz0b ppc64el 12.1.0-1 [679 kB] 278s Get:22 http://ftpmaster.internal/ubuntu resolute/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 278s Get:23 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-4ubuntu2 [215 kB] 278s Get:24 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 278s Get:25 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblcms2-2 ppc64el 2.16-2 [243 kB] 278s Get:26 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu1 [298 kB] 278s Get:27 http://ftpmaster.internal/ubuntu resolute/main ppc64el libraqm0 ppc64el 0.10.3-1 [19.6 kB] 278s Get:28 http://ftpmaster.internal/ubuntu resolute/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1 [22.3 kB] 278s Get:29 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB] 278s Get:30 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebp7 ppc64el 1.5.0-0.1 [315 kB] 278s Get:31 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtiff6 ppc64el 4.7.0-3ubuntu3 [307 kB] 278s Get:32 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebpdemux2 ppc64el 1.5.0-0.1 [14.6 kB] 278s Get:33 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebpmux3 ppc64el 1.5.0-0.1 [31.1 kB] 278s Get:34 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-argcomplete all 3.6.2-1 [35.8 kB] 278s Get:35 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-charset-normalizer ppc64el 3.4.2-1 [132 kB] 278s Get:36 http://ftpmaster.internal/ubuntu resolute/main ppc64el libopenjp2-7 ppc64el 2.5.3-2.1 [251 kB] 279s Get:37 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-pil ppc64el 11.3.0-1ubuntu2 [654 kB] 279s Get:38 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-cairo ppc64el 1.27.0-2build1 [150 kB] 279s Get:39 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-freetype all 2.5.1-2 [92.2 kB] 279s Get:40 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-rlpycairo all 0.3.0-4 [9332 B] 279s Get:41 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-reportlab all 4.4.4-2 [1147 kB] 280s Get:42 http://ftpmaster.internal/ubuntu resolute/main ppc64el sgml-base all 1.31+nmu1 [11.0 kB] 280s Get:43 http://ftpmaster.internal/ubuntu resolute/main ppc64el xml-core all 0.19 [20.3 kB] 280s Get:44 http://ftpmaster.internal/ubuntu resolute/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB] 280s Get:45 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-biopython ppc64el 1.85+dfsg-4 [1764 kB] 281s Get:46 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-argh all 0.31.3-1 [27.0 kB] 281s Get:47 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-packaging all 25.0-1 [52.8 kB] 281s Get:48 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pyfaidx all 0.8.1.3-2 [29.7 kB] 281s Get:49 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-gffutils all 0.13-3 [1080 kB] 281s Get:50 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-iniconfig all 2.1.0-1 [6840 B] 281s Get:51 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pluggy all 1.6.0-1 [21.0 kB] 281s Get:52 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el python3-pytest all 8.4.2-1 [268 kB] 282s Fetched 30.6 MB in 11s (2796 kB/s) 282s Selecting previously unselected package python3-numpy-dev:ppc64el. 282s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76579 files and directories currently installed.) 282s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_ppc64el.deb ... 282s Unpacking python3-numpy-dev:ppc64el (1:2.2.4+ds-1ubuntu1) ... 282s Selecting previously unselected package libblas3:ppc64el. 282s Preparing to unpack .../01-libblas3_3.12.1-7_ppc64el.deb ... 282s Unpacking libblas3:ppc64el (3.12.1-7) ... 282s Selecting previously unselected package libgfortran5:ppc64el. 282s Preparing to unpack .../02-libgfortran5_15.2.0-7ubuntu1_ppc64el.deb ... 282s Unpacking libgfortran5:ppc64el (15.2.0-7ubuntu1) ... 282s Selecting previously unselected package liblapack3:ppc64el. 282s Preparing to unpack .../03-liblapack3_3.12.1-7_ppc64el.deb ... 282s Unpacking liblapack3:ppc64el (3.12.1-7) ... 282s Selecting previously unselected package python3-numpy. 282s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_ppc64el.deb ... 282s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 282s Selecting previously unselected package libfontenc1:ppc64el. 282s Preparing to unpack .../05-libfontenc1_1%3a1.1.8-1build1_ppc64el.deb ... 282s Unpacking libfontenc1:ppc64el (1:1.1.8-1build1) ... 282s Selecting previously unselected package x11-common. 282s Preparing to unpack .../06-x11-common_1%3a7.7+24ubuntu1_all.deb ... 282s Unpacking x11-common (1:7.7+24ubuntu1) ... 282s Selecting previously unselected package xfonts-encodings. 282s Preparing to unpack .../07-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 282s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 282s Selecting previously unselected package xfonts-utils. 282s Preparing to unpack .../08-xfonts-utils_1%3a7.7+7_ppc64el.deb ... 282s Unpacking xfonts-utils (1:7.7+7) ... 282s Selecting previously unselected package fonts-urw-base35. 282s Preparing to unpack .../09-fonts-urw-base35_20200910-8_all.deb ... 282s Unpacking fonts-urw-base35 (20200910-8) ... 282s Selecting previously unselected package fontconfig-config. 282s Preparing to unpack .../10-fontconfig-config_2.15.0-2.3ubuntu1_ppc64el.deb ... 282s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 283s Selecting previously unselected package libfontconfig1:ppc64el. 283s Preparing to unpack .../11-libfontconfig1_2.15.0-2.3ubuntu1_ppc64el.deb ... 283s Unpacking libfontconfig1:ppc64el (2.15.0-2.3ubuntu1) ... 283s Selecting previously unselected package libpixman-1-0:ppc64el. 283s Preparing to unpack .../12-libpixman-1-0_0.46.4-1_ppc64el.deb ... 283s Unpacking libpixman-1-0:ppc64el (0.46.4-1) ... 283s Selecting previously unselected package libxcb-render0:ppc64el. 283s Preparing to unpack .../13-libxcb-render0_1.17.0-2build1_ppc64el.deb ... 283s Unpacking libxcb-render0:ppc64el (1.17.0-2build1) ... 283s Selecting previously unselected package libxcb-shm0:ppc64el. 283s Preparing to unpack .../14-libxcb-shm0_1.17.0-2build1_ppc64el.deb ... 283s Unpacking libxcb-shm0:ppc64el (1.17.0-2build1) ... 283s Selecting previously unselected package libxrender1:ppc64el. 283s Preparing to unpack .../15-libxrender1_1%3a0.9.12-1_ppc64el.deb ... 283s Unpacking libxrender1:ppc64el (1:0.9.12-1) ... 283s Selecting previously unselected package libcairo2:ppc64el. 283s Preparing to unpack .../16-libcairo2_1.18.4-1build1_ppc64el.deb ... 283s Unpacking libcairo2:ppc64el (1.18.4-1build1) ... 283s Selecting previously unselected package libdeflate0:ppc64el. 283s Preparing to unpack .../17-libdeflate0_1.23-2_ppc64el.deb ... 283s Unpacking libdeflate0:ppc64el (1.23-2) ... 283s Selecting previously unselected package libgomp1:ppc64el. 283s Preparing to unpack .../18-libgomp1_15.2.0-7ubuntu1_ppc64el.deb ... 283s Unpacking libgomp1:ppc64el (15.2.0-7ubuntu1) ... 283s Selecting previously unselected package libgraphite2-3:ppc64el. 283s Preparing to unpack .../19-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 283s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 283s Selecting previously unselected package libharfbuzz0b:ppc64el. 283s Preparing to unpack .../20-libharfbuzz0b_12.1.0-1_ppc64el.deb ... 283s Unpacking libharfbuzz0b:ppc64el (12.1.0-1) ... 283s Selecting previously unselected package libimagequant0:ppc64el. 283s Preparing to unpack .../21-libimagequant0_2.18.0-1build1_ppc64el.deb ... 283s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 283s Selecting previously unselected package libjpeg-turbo8:ppc64el. 283s Preparing to unpack .../22-libjpeg-turbo8_2.1.5-4ubuntu2_ppc64el.deb ... 283s Unpacking libjpeg-turbo8:ppc64el (2.1.5-4ubuntu2) ... 283s Selecting previously unselected package libjpeg8:ppc64el. 283s Preparing to unpack .../23-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 283s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 283s Selecting previously unselected package liblcms2-2:ppc64el. 283s Preparing to unpack .../24-liblcms2-2_2.16-2_ppc64el.deb ... 283s Unpacking liblcms2-2:ppc64el (2.16-2) ... 283s Selecting previously unselected package liblerc4:ppc64el. 283s Preparing to unpack .../25-liblerc4_4.0.0+ds-5ubuntu1_ppc64el.deb ... 283s Unpacking liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 283s Selecting previously unselected package libraqm0:ppc64el. 283s Preparing to unpack .../26-libraqm0_0.10.3-1_ppc64el.deb ... 283s Unpacking libraqm0:ppc64el (0.10.3-1) ... 283s Selecting previously unselected package libsharpyuv0:ppc64el. 283s Preparing to unpack .../27-libsharpyuv0_1.5.0-0.1_ppc64el.deb ... 283s Unpacking libsharpyuv0:ppc64el (1.5.0-0.1) ... 283s Selecting previously unselected package libjbig0:ppc64el. 283s Preparing to unpack .../28-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ... 283s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ... 283s Selecting previously unselected package libwebp7:ppc64el. 283s Preparing to unpack .../29-libwebp7_1.5.0-0.1_ppc64el.deb ... 283s Unpacking libwebp7:ppc64el (1.5.0-0.1) ... 283s Selecting previously unselected package libtiff6:ppc64el. 283s Preparing to unpack .../30-libtiff6_4.7.0-3ubuntu3_ppc64el.deb ... 283s Unpacking libtiff6:ppc64el (4.7.0-3ubuntu3) ... 283s Selecting previously unselected package libwebpdemux2:ppc64el. 283s Preparing to unpack .../31-libwebpdemux2_1.5.0-0.1_ppc64el.deb ... 283s Unpacking libwebpdemux2:ppc64el (1.5.0-0.1) ... 283s Selecting previously unselected package libwebpmux3:ppc64el. 283s Preparing to unpack .../32-libwebpmux3_1.5.0-0.1_ppc64el.deb ... 283s Unpacking libwebpmux3:ppc64el (1.5.0-0.1) ... 283s Selecting previously unselected package python3-argcomplete. 283s Preparing to unpack .../33-python3-argcomplete_3.6.2-1_all.deb ... 283s Unpacking python3-argcomplete (3.6.2-1) ... 283s Selecting previously unselected package python3-charset-normalizer. 283s Preparing to unpack .../34-python3-charset-normalizer_3.4.2-1_ppc64el.deb ... 283s Unpacking python3-charset-normalizer (3.4.2-1) ... 283s Selecting previously unselected package libopenjp2-7:ppc64el. 283s Preparing to unpack .../35-libopenjp2-7_2.5.3-2.1_ppc64el.deb ... 283s Unpacking libopenjp2-7:ppc64el (2.5.3-2.1) ... 283s Selecting previously unselected package python3-pil:ppc64el. 283s Preparing to unpack .../36-python3-pil_11.3.0-1ubuntu2_ppc64el.deb ... 283s Unpacking python3-pil:ppc64el (11.3.0-1ubuntu2) ... 283s Selecting previously unselected package python3-cairo. 283s Preparing to unpack .../37-python3-cairo_1.27.0-2build1_ppc64el.deb ... 283s Unpacking python3-cairo (1.27.0-2build1) ... 283s Selecting previously unselected package python3-freetype. 283s Preparing to unpack .../38-python3-freetype_2.5.1-2_all.deb ... 283s Unpacking python3-freetype (2.5.1-2) ... 283s Selecting previously unselected package python3-rlpycairo. 283s Preparing to unpack .../39-python3-rlpycairo_0.3.0-4_all.deb ... 283s Unpacking python3-rlpycairo (0.3.0-4) ... 283s Selecting previously unselected package python3-reportlab. 283s Preparing to unpack .../40-python3-reportlab_4.4.4-2_all.deb ... 283s Unpacking python3-reportlab (4.4.4-2) ... 283s Selecting previously unselected package sgml-base. 283s Preparing to unpack .../41-sgml-base_1.31+nmu1_all.deb ... 283s Unpacking sgml-base (1.31+nmu1) ... 283s Selecting previously unselected package xml-core. 283s Preparing to unpack .../42-xml-core_0.19_all.deb ... 283s Unpacking xml-core (0.19) ... 283s Selecting previously unselected package w3c-sgml-lib. 283s Preparing to unpack .../43-w3c-sgml-lib_1.3-3_all.deb ... 283s Unpacking w3c-sgml-lib (1.3-3) ... 283s Selecting previously unselected package python3-biopython. 283s Preparing to unpack .../44-python3-biopython_1.85+dfsg-4_ppc64el.deb ... 283s Unpacking python3-biopython (1.85+dfsg-4) ... 283s Selecting previously unselected package python3-argh. 283s Preparing to unpack .../45-python3-argh_0.31.3-1_all.deb ... 283s Unpacking python3-argh (0.31.3-1) ... 283s Selecting previously unselected package python3-packaging. 283s Preparing to unpack .../46-python3-packaging_25.0-1_all.deb ... 283s Unpacking python3-packaging (25.0-1) ... 283s Selecting previously unselected package python3-pyfaidx. 283s Preparing to unpack .../47-python3-pyfaidx_0.8.1.3-2_all.deb ... 283s Unpacking python3-pyfaidx (0.8.1.3-2) ... 283s Selecting previously unselected package python3-gffutils. 283s Preparing to unpack .../48-python3-gffutils_0.13-3_all.deb ... 283s Unpacking python3-gffutils (0.13-3) ... 283s Selecting previously unselected package python3-iniconfig. 283s Preparing to unpack .../49-python3-iniconfig_2.1.0-1_all.deb ... 283s Unpacking python3-iniconfig (2.1.0-1) ... 283s Selecting previously unselected package python3-pluggy. 284s Preparing to unpack .../50-python3-pluggy_1.6.0-1_all.deb ... 284s Unpacking python3-pluggy (1.6.0-1) ... 284s Selecting previously unselected package python3-pytest. 284s Preparing to unpack .../51-python3-pytest_8.4.2-1_all.deb ... 284s Unpacking python3-pytest (8.4.2-1) ... 284s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 284s Setting up liblcms2-2:ppc64el (2.16-2) ... 284s Setting up python3-iniconfig (2.1.0-1) ... 284s Setting up libpixman-1-0:ppc64el (0.46.4-1) ... 284s Setting up python3-argh (0.31.3-1) ... 284s Setting up libsharpyuv0:ppc64el (1.5.0-0.1) ... 284s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 284s Setting up libxrender1:ppc64el (1:0.9.12-1) ... 284s Setting up libxcb-render0:ppc64el (1.17.0-2build1) ... 284s Setting up python3-charset-normalizer (3.4.2-1) ... 284s Setting up x11-common (1:7.7+24ubuntu1) ... 284s Setting up libdeflate0:ppc64el (1.23-2) ... 284s Setting up libxcb-shm0:ppc64el (1.17.0-2build1) ... 284s Setting up libgomp1:ppc64el (15.2.0-7ubuntu1) ... 284s Setting up python3-freetype (2.5.1-2) ... 284s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ... 284s Setting up libfontenc1:ppc64el (1:1.1.8-1build1) ... 284s Setting up libblas3:ppc64el (3.12.1-7) ... 284s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 284s Setting up python3-packaging (25.0-1) ... 285s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 285s Setting up libimagequant0:ppc64el (2.18.0-1build1) ... 285s Setting up python3-numpy-dev:ppc64el (1:2.2.4+ds-1ubuntu1) ... 285s Setting up libjpeg-turbo8:ppc64el (2.1.5-4ubuntu2) ... 285s Setting up libgfortran5:ppc64el (15.2.0-7ubuntu1) ... 285s Setting up python3-pluggy (1.6.0-1) ... 285s Setting up libwebp7:ppc64el (1.5.0-0.1) ... 285s Setting up libopenjp2-7:ppc64el (2.5.3-2.1) ... 285s Setting up libharfbuzz0b:ppc64el (12.1.0-1) ... 285s Setting up sgml-base (1.31+nmu1) ... 285s Setting up python3-argcomplete (3.6.2-1) ... 285s Setting up libwebpmux3:ppc64el (1.5.0-0.1) ... 285s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 285s Setting up python3-pyfaidx (0.8.1.3-2) ... 285s Setting up liblapack3:ppc64el (3.12.1-7) ... 285s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 285s Setting up python3-pytest (8.4.2-1) ... 285s Setting up libwebpdemux2:ppc64el (1.5.0-0.1) ... 285s Setting up xfonts-utils (1:7.7+7) ... 285s Setting up libraqm0:ppc64el (0.10.3-1) ... 285s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 287s Setting up libtiff6:ppc64el (4.7.0-3ubuntu3) ... 287s Setting up xml-core (0.19) ... 287s Setting up fonts-urw-base35 (20200910-8) ... 287s Setting up python3-pil:ppc64el (11.3.0-1ubuntu2) ... 288s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 288s Setting up libfontconfig1:ppc64el (2.15.0-2.3ubuntu1) ... 288s Setting up libcairo2:ppc64el (1.18.4-1build1) ... 288s Setting up python3-cairo (1.27.0-2build1) ... 288s Setting up python3-rlpycairo (0.3.0-4) ... 288s Setting up python3-reportlab (4.4.4-2) ... 289s Processing triggers for libc-bin (2.42-0ubuntu3) ... 289s Processing triggers for man-db (2.13.1-1) ... 290s Processing triggers for sgml-base (1.31+nmu1) ... 290s Setting up w3c-sgml-lib (1.3-3) ... 318s Setting up python3-biopython (1.85+dfsg-4) ... 319s Setting up python3-gffutils (0.13-3) ... 320s autopkgtest [11:35:14]: test run-unit-test: [----------------------- 320s + pkg=python-gffutils 320s + [ /tmp/autopkgtest.seos52/autopkgtest_tmp = ] 320s + cd /tmp/autopkgtest.seos52/autopkgtest_tmp 320s + export HOME=/tmp/autopkgtest.seos52/autopkgtest_tmp 320s + cp -r /usr/lib/python3/dist-packages/gffutils/test ./ 320s + pytest --doctest-modules -m not slow test 321s ============================= test session starts ============================== 321s platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 321s rootdir: /tmp/autopkgtest.seos52/autopkgtest_tmp 321s plugins: typeguard-4.4.2 321s collected 110 items 321s 321s test/feature_test.py ........... [ 10%] 321s test/helpers_test.py .. [ 11%] 321s test/parser_test.py .................. [ 28%] 323s test/test_1.py ......................s........... [ 59%] 323s test/test_biopython_integration.py . [ 60%] 323s test/test_cli.py . [ 60%] 323s test/test_issues.py ........................ [ 82%] 323s test/test_iterators.py .... [ 86%] 323s test/test_merge.py ......... [ 94%] 323s test/test_merge_all.py ...... [100%] 323s 323s =============================== warnings summary =============================== 323s test/performance_evaluation.py:190 323s /tmp/autopkgtest.seos52/autopkgtest_tmp/test/performance_evaluation.py:190: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 323s @pytest.mark.slow 323s 323s test/performance_evaluation.py:208 323s /tmp/autopkgtest.seos52/autopkgtest_tmp/test/performance_evaluation.py:208: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 323s @pytest.mark.slow 323s 323s test/parser_test.py::test_parser_from_string 323s /usr/lib/python3/dist-packages/_pytest/python.py:161: PytestReturnNotNoneWarning: Test functions should return None, but test/parser_test.py::test_parser_from_string returned . 323s Did you mean to use `assert` instead of `return`? 323s See https://docs.pytest.org/en/stable/how-to/assert.html#return-not-none for more information. 323s warnings.warn( 323s 323s test/parser_test.py::test_inconsistent_dialect 323s test/test_1.py::test_disable_infer 323s test/test_issues.py::test_pr_172 323s /usr/lib/python3/dist-packages/gffutils/create.py:770: UserWarning: It appears you have a gene feature in your GTF file. You may want to use the `disable_infer_genes=True` option to speed up database creation 323s warnings.warn( 323s 323s test/test_1.py::test_disable_infer 323s /usr/lib/python3/dist-packages/gffutils/create.py:763: UserWarning: It appears you have a transcript feature in your GTF file. You may want to use the `disable_infer_transcripts=True` option to speed up database creation 323s warnings.warn( 323s 323s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 323s ================== 109 passed, 1 skipped, 7 warnings in 2.44s ================== 324s autopkgtest [11:35:18]: test run-unit-test: -----------------------] 324s run-unit-test PASS 324s autopkgtest [11:35:18]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 324s autopkgtest [11:35:18]: @@@@@@@@@@@@@@@@@@@@ summary 324s run-unit-test PASS