0s autopkgtest [20:24:46]: starting date and time: 2026-01-22 20:24:46+0000 0s autopkgtest [20:24:46]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [20:24:46]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.7uk91qfv/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade python-biopython --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.14.2-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-ppc64el-20.secgroup --name adt-resolute-ppc64el-python-biopython-20260122-201340-juju-7f2275-prod-proposed-migration-environment-20-4b21fe92-9a96-4318-a3a3-2ba59e27364f --image adt/ubuntu-resolute-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 5s Creating nova instance adt-resolute-ppc64el-python-biopython-20260122-201340-juju-7f2275-prod-proposed-migration-environment-20-4b21fe92-9a96-4318-a3a3-2ba59e27364f from image adt/ubuntu-resolute-ppc64el-server-20260122.img (UUID 987e5803-394f-43eb-a969-151b6b75a57a)... 53s autopkgtest [20:25:39]: testbed dpkg architecture: ppc64el 53s autopkgtest [20:25:39]: testbed apt version: 3.1.12 54s autopkgtest [20:25:40]: @@@@@@@@@@@@@@@@@@@@ test bed setup 54s autopkgtest [20:25:40]: testbed release detected to be: None 55s autopkgtest [20:25:41]: updating testbed package index (apt update) 55s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 55s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 55s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 55s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 55s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 55s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1011 kB] 55s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [81.6 kB] 55s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.2 kB] 55s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el Packages [100 kB] 55s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el Packages [703 kB] 56s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse ppc64el Packages [5552 B] 56s Fetched 2050 kB in 1s (2089 kB/s) 56s Reading package lists... 57s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 57s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 57s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 57s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 58s Reading package lists... 58s Reading package lists... 58s Building dependency tree... 58s Reading state information... 58s Calculating upgrade... 58s The following packages were automatically installed and are no longer required: 58s python3.13 python3.13-minimal 58s Use 'sudo apt autoremove' to remove them. 58s The following NEW packages will be installed: 58s libpython3.14-minimal libpython3.14-stdlib python3.14 python3.14-minimal 58s The following packages will be upgraded: 58s libplymouth5 libpython3-stdlib plymouth plymouth-theme-ubuntu-text python3 58s python3-gdbm python3-minimal 58s 7 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 58s Need to get 7312 kB of archives. 58s After this operation, 27.7 MB of additional disk space will be used. 58s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpython3.14-minimal ppc64el 3.14.2-1 [921 kB] 59s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.14-minimal ppc64el 3.14.2-1 [2712 kB] 59s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-gdbm ppc64el 3.14.2-1 [11.1 kB] 59s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-minimal ppc64el 3.14.2-1 [28.2 kB] 59s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3 ppc64el 3.14.2-1 [22.9 kB] 59s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpython3.14-stdlib ppc64el 3.14.2-1 [2444 kB] 59s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.14 ppc64el 3.14.2-1 [816 kB] 59s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libpython3-stdlib ppc64el 3.14.2-1 [10.9 kB] 59s Get:9 http://ftpmaster.internal/ubuntu resolute/main ppc64el libplymouth5 ppc64el 24.004.60+git20250831.4a3c171d-0ubuntu4 [174 kB] 59s Get:10 http://ftpmaster.internal/ubuntu resolute/main ppc64el plymouth-theme-ubuntu-text ppc64el 24.004.60+git20250831.4a3c171d-0ubuntu4 [11.2 kB] 59s Get:11 http://ftpmaster.internal/ubuntu resolute/main ppc64el plymouth ppc64el 24.004.60+git20250831.4a3c171d-0ubuntu4 [160 kB] 59s dpkg-preconfigure: unable to re-open stdin: No such file or directory 59s Fetched 7312 kB in 1s (13.1 MB/s) 59s Selecting previously unselected package libpython3.14-minimal:ppc64el. 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 120824 files and directories currently installed.) 60s Preparing to unpack .../libpython3.14-minimal_3.14.2-1_ppc64el.deb ... 60s Unpacking libpython3.14-minimal:ppc64el (3.14.2-1) ... 60s Selecting previously unselected package python3.14-minimal. 60s Preparing to unpack .../python3.14-minimal_3.14.2-1_ppc64el.deb ... 60s Unpacking python3.14-minimal (3.14.2-1) ... 60s Preparing to unpack .../python3-gdbm_3.14.2-1_ppc64el.deb ... 60s Unpacking python3-gdbm (3.14.2-1) over (3.13.9-1) ... 60s Setting up libpython3.14-minimal:ppc64el (3.14.2-1) ... 60s Setting up python3.14-minimal (3.14.2-1) ... 61s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121166 files and directories currently installed.) 61s Preparing to unpack .../python3-minimal_3.14.2-1_ppc64el.deb ... 61s Unpacking python3-minimal (3.14.2-1) over (3.13.7-1) ... 62s Setting up python3-minimal (3.14.2-1) ... 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121166 files and directories currently installed.) 62s Preparing to unpack .../0-python3_3.14.2-1_ppc64el.deb ... 62s running python pre-rtupdate hooks for python3.14... 62s Unpacking python3 (3.14.2-1) over (3.13.7-1) ... 62s Selecting previously unselected package libpython3.14-stdlib:ppc64el. 62s Preparing to unpack .../1-libpython3.14-stdlib_3.14.2-1_ppc64el.deb ... 62s Unpacking libpython3.14-stdlib:ppc64el (3.14.2-1) ... 62s Selecting previously unselected package python3.14. 62s Preparing to unpack .../2-python3.14_3.14.2-1_ppc64el.deb ... 62s Unpacking python3.14 (3.14.2-1) ... 62s Preparing to unpack .../3-libpython3-stdlib_3.14.2-1_ppc64el.deb ... 62s Unpacking libpython3-stdlib:ppc64el (3.14.2-1) over (3.13.7-1) ... 62s Preparing to unpack .../4-libplymouth5_24.004.60+git20250831.4a3c171d-0ubuntu4_ppc64el.deb ... 62s Unpacking libplymouth5:ppc64el (24.004.60+git20250831.4a3c171d-0ubuntu4) over (24.004.60+git20250831.4a3c171d-0ubuntu3) ... 63s Preparing to unpack .../5-plymouth-theme-ubuntu-text_24.004.60+git20250831.4a3c171d-0ubuntu4_ppc64el.deb ... 63s Unpacking plymouth-theme-ubuntu-text (24.004.60+git20250831.4a3c171d-0ubuntu4) over (24.004.60+git20250831.4a3c171d-0ubuntu3) ... 63s Preparing to unpack .../6-plymouth_24.004.60+git20250831.4a3c171d-0ubuntu4_ppc64el.deb ... 63s Unpacking plymouth (24.004.60+git20250831.4a3c171d-0ubuntu4) over (24.004.60+git20250831.4a3c171d-0ubuntu3) ... 63s Setting up libpython3.14-stdlib:ppc64el (3.14.2-1) ... 63s Setting up libplymouth5:ppc64el (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 64s Setting up python3.14 (3.14.2-1) ... 65s Setting up libpython3-stdlib:ppc64el (3.14.2-1) ... 65s Setting up python3-gdbm (3.14.2-1) ... 65s Setting up plymouth (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 65s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 65s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 66s Setting up python3 (3.14.2-1) ... 66s running python rtupdate hooks for python3.14... 66s running python post-rtupdate hooks for python3.14... 66s Processing triggers for libc-bin (2.42-2ubuntu4) ... 66s Processing triggers for systemd (259-1ubuntu2) ... 66s Processing triggers for man-db (2.13.1-1) ... 68s Processing triggers for initramfs-tools (0.150ubuntu7) ... 68s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 75s Setting up plymouth-theme-ubuntu-text (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 75s Processing triggers for initramfs-tools (0.150ubuntu7) ... 75s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 81s autopkgtest [20:26:07]: upgrading testbed (apt dist-upgrade and autopurge) 81s Reading package lists... 81s Building dependency tree... 81s Reading state information... 81s Calculating upgrade... 81s The following packages were automatically installed and are no longer required: 81s python3.13 python3.13-minimal 81s Use 'sudo apt autoremove' to remove them. 81s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 81s Reading package lists... 81s Building dependency tree... 81s Reading state information... 81s Solving dependencies... 81s The following packages will be REMOVED: 81s python3.13* python3.13-minimal* 82s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 82s After this operation, 9077 kB disk space will be freed. 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121596 files and directories currently installed.) 82s Removing python3.13 (3.13.11-1) ... 82s Removing python3.13-minimal (3.13.11-1) ... 83s Processing triggers for man-db (2.13.1-1) ... 83s Processing triggers for systemd (259-1ubuntu2) ... 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121569 files and directories currently installed.) 83s Purging configuration files for python3.13-minimal (3.13.11-1) ... 84s autopkgtest [20:26:10]: rebooting testbed after setup commands that affected boot 122s autopkgtest [20:26:48]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:45:54 UTC 2026 124s autopkgtest [20:26:50]: @@@@@@@@@@@@@@@@@@@@ apt-source python-biopython 129s Get:1 http://ftpmaster.internal/ubuntu resolute/universe python-biopython 1.86+dfsg-1 (dsc) [3562 B] 129s Get:2 http://ftpmaster.internal/ubuntu resolute/universe python-biopython 1.86+dfsg-1 (tar) [14.5 MB] 129s Get:3 http://ftpmaster.internal/ubuntu resolute/universe python-biopython 1.86+dfsg-1 (diff) [41.4 kB] 129s gpgv: Signature made Wed Oct 29 22:41:45 2025 UTC 129s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 129s gpgv: issuer "emollier@debian.org" 129s gpgv: Can't check signature: No public key 129s dpkg-source: warning: cannot verify inline signature for ./python-biopython_1.86+dfsg-1.dsc: no acceptable signature found 130s autopkgtest [20:26:56]: testing package python-biopython version 1.86+dfsg-1 131s autopkgtest [20:26:57]: build not needed 136s autopkgtest [20:27:02]: test dependencies: preparing testbed 136s Reading package lists... 136s Building dependency tree... 136s Reading state information... 136s Solving dependencies... 136s The following NEW packages will be installed: 136s fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 136s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 136s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 136s libjpeg-turbo8 libjpeg8 libjs-jquery liblapack3 liblcms2-2 liblerc4 136s libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7 136s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 136s python-biopython-doc python3-all python3-biopython python3-biopython-sql 136s python3-cairo python3-charset-normalizer python3-freetype python3-numpy 136s python3-numpy-dev python3-pil python3-reportlab python3-rlpycairo python3.13 136s python3.13-minimal sgml-base w3c-sgml-lib x11-common xfonts-encodings 136s xfonts-utils xml-core 137s 0 upgraded, 53 newly installed, 0 to remove and 0 not upgraded. 137s Need to get 54.9 MB of archives. 137s After this operation, 166 MB of additional disk space will be used. 137s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.13-minimal ppc64el 3.13.11-1 [2571 kB] 137s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy-dev ppc64el 1:2.3.5+ds-3 [153 kB] 137s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el libblas3 ppc64el 3.12.1-7ubuntu1 [291 kB] 137s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgfortran5 ppc64el 15.2.0-11ubuntu1 [620 kB] 137s Get:5 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblapack3 ppc64el 3.12.1-7ubuntu1 [2960 kB] 138s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy ppc64el 1:2.3.5+ds-3 [5722 kB] 138s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.13 ppc64el 3.13.11-1 [758 kB] 138s Get:8 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-dejavu-mono all 2.37-8build1 [502 kB] 138s Get:9 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-dejavu-core all 2.37-8build1 [834 kB] 138s Get:10 http://ftpmaster.internal/ubuntu resolute/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build2 [16.1 kB] 138s Get:11 http://ftpmaster.internal/ubuntu resolute/main ppc64el x11-common all 1:7.7+24ubuntu1 [22.4 kB] 139s Get:12 http://ftpmaster.internal/ubuntu resolute/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu3 [576 kB] 139s Get:13 http://ftpmaster.internal/ubuntu resolute/main ppc64el xfonts-utils ppc64el 1:7.7+7build1 [115 kB] 139s Get:14 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-urw-base35 all 20200910-8build1 [10.9 MB] 139s Get:15 http://ftpmaster.internal/ubuntu resolute/main ppc64el fontconfig-config ppc64el 2.15.0-2.4ubuntu1 [38.2 kB] 139s Get:16 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-dejavu-extra all 2.37-8build1 [1944 kB] 139s Get:17 http://ftpmaster.internal/ubuntu resolute/main ppc64el libfontconfig1 ppc64el 2.15.0-2.4ubuntu1 [190 kB] 139s Get:18 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpixman-1-0 ppc64el 0.46.4-1 [347 kB] 139s Get:19 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-render0 ppc64el 1.17.0-2build1 [17.2 kB] 139s Get:20 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-shm0 ppc64el 1.17.0-2build1 [6078 B] 139s Get:21 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxrender1 ppc64el 1:0.9.12-1 [23.0 kB] 139s Get:22 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcairo2 ppc64el 1.18.4-3 [759 kB] 139s Get:23 http://ftpmaster.internal/ubuntu resolute/main ppc64el libdeflate0 ppc64el 1.23-2 [63.3 kB] 139s Get:24 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgomp1 ppc64el 15.2.0-11ubuntu1 [169 kB] 139s Get:25 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgraphite2-3 ppc64el 1.3.14-11ubuntu1 [85.3 kB] 140s Get:26 http://ftpmaster.internal/ubuntu resolute/main ppc64el libharfbuzz0b ppc64el 12.3.0-4 [674 kB] 140s Get:27 http://ftpmaster.internal/ubuntu resolute/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 140s Get:28 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-4ubuntu2 [215 kB] 140s Get:29 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 140s Get:30 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 140s Get:31 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblcms2-2 ppc64el 2.17-1 [246 kB] 140s Get:32 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu2 [315 kB] 140s Get:33 http://ftpmaster.internal/ubuntu resolute/main ppc64el libraqm0 ppc64el 0.10.3-1 [19.6 kB] 140s Get:34 http://ftpmaster.internal/ubuntu resolute/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1build1 [24.7 kB] 140s Get:35 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu3 [37.1 kB] 140s Get:36 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebp7 ppc64el 1.5.0-0.1build1 [330 kB] 140s Get:37 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtiff6 ppc64el 4.7.0-3ubuntu3 [307 kB] 140s Get:38 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebpdemux2 ppc64el 1.5.0-0.1build1 [14.8 kB] 140s Get:39 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebpmux3 ppc64el 1.5.0-0.1build1 [31.3 kB] 140s Get:40 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python-biopython-doc all 1.86+dfsg-1 [18.1 MB] 141s Get:41 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-all ppc64el 3.14.2-1 [890 B] 141s Get:42 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-charset-normalizer ppc64el 3.4.4-2 [175 kB] 141s Get:43 http://ftpmaster.internal/ubuntu resolute/main ppc64el libopenjp2-7 ppc64el 2.5.4-1 [251 kB] 141s Get:44 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-pil ppc64el 12.0.0-1ubuntu1 [645 kB] 141s Get:45 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-cairo ppc64el 1.27.0-2build1 [150 kB] 141s Get:46 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-freetype all 2.5.1-2 [92.2 kB] 141s Get:47 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-rlpycairo all 0.3.0-4 [9332 B] 141s Get:48 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-reportlab all 4.4.9-1 [1149 kB] 141s Get:49 http://ftpmaster.internal/ubuntu resolute/main ppc64el sgml-base all 1.31+nmu1 [11.0 kB] 141s Get:50 http://ftpmaster.internal/ubuntu resolute/main ppc64el xml-core all 0.19build1 [20.3 kB] 141s Get:51 http://ftpmaster.internal/ubuntu resolute/universe ppc64el w3c-sgml-lib all 1.3-3build1 [278 kB] 141s Get:52 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-biopython ppc64el 1.86+dfsg-1 [1726 kB] 142s Get:53 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-biopython-sql all 1.86+dfsg-1 [26.4 kB] 142s Fetched 54.9 MB in 5s (10.4 MB/s) 142s Selecting previously unselected package python3.13-minimal. 142s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121571 files and directories currently installed.) 142s Preparing to unpack .../00-python3.13-minimal_3.13.11-1_ppc64el.deb ... 142s Unpacking python3.13-minimal (3.13.11-1) ... 142s Selecting previously unselected package python3-numpy-dev:ppc64el. 142s Preparing to unpack .../01-python3-numpy-dev_1%3a2.3.5+ds-3_ppc64el.deb ... 142s Unpacking python3-numpy-dev:ppc64el (1:2.3.5+ds-3) ... 142s Selecting previously unselected package libblas3:ppc64el. 142s Preparing to unpack .../02-libblas3_3.12.1-7ubuntu1_ppc64el.deb ... 142s Unpacking libblas3:ppc64el (3.12.1-7ubuntu1) ... 142s Selecting previously unselected package libgfortran5:ppc64el. 142s Preparing to unpack .../03-libgfortran5_15.2.0-11ubuntu1_ppc64el.deb ... 142s Unpacking libgfortran5:ppc64el (15.2.0-11ubuntu1) ... 142s Selecting previously unselected package liblapack3:ppc64el. 142s Preparing to unpack .../04-liblapack3_3.12.1-7ubuntu1_ppc64el.deb ... 142s Unpacking liblapack3:ppc64el (3.12.1-7ubuntu1) ... 143s Selecting previously unselected package python3-numpy. 143s Preparing to unpack .../05-python3-numpy_1%3a2.3.5+ds-3_ppc64el.deb ... 143s Unpacking python3-numpy (1:2.3.5+ds-3) ... 143s Selecting previously unselected package python3.13. 143s Preparing to unpack .../06-python3.13_3.13.11-1_ppc64el.deb ... 143s Unpacking python3.13 (3.13.11-1) ... 143s Selecting previously unselected package fonts-dejavu-mono. 143s Preparing to unpack .../07-fonts-dejavu-mono_2.37-8build1_all.deb ... 143s Unpacking fonts-dejavu-mono (2.37-8build1) ... 143s Selecting previously unselected package fonts-dejavu-core. 143s Preparing to unpack .../08-fonts-dejavu-core_2.37-8build1_all.deb ... 143s Unpacking fonts-dejavu-core (2.37-8build1) ... 143s Selecting previously unselected package libfontenc1:ppc64el. 143s Preparing to unpack .../09-libfontenc1_1%3a1.1.8-1build2_ppc64el.deb ... 143s Unpacking libfontenc1:ppc64el (1:1.1.8-1build2) ... 143s Selecting previously unselected package x11-common. 143s Preparing to unpack .../10-x11-common_1%3a7.7+24ubuntu1_all.deb ... 143s Unpacking x11-common (1:7.7+24ubuntu1) ... 143s Selecting previously unselected package xfonts-encodings. 143s Preparing to unpack .../11-xfonts-encodings_1%3a1.0.5-0ubuntu3_all.deb ... 143s Unpacking xfonts-encodings (1:1.0.5-0ubuntu3) ... 143s Selecting previously unselected package xfonts-utils. 143s Preparing to unpack .../12-xfonts-utils_1%3a7.7+7build1_ppc64el.deb ... 143s Unpacking xfonts-utils (1:7.7+7build1) ... 143s Selecting previously unselected package fonts-urw-base35. 143s Preparing to unpack .../13-fonts-urw-base35_20200910-8build1_all.deb ... 143s Unpacking fonts-urw-base35 (20200910-8build1) ... 143s Selecting previously unselected package fontconfig-config. 143s Preparing to unpack .../14-fontconfig-config_2.15.0-2.4ubuntu1_ppc64el.deb ... 143s Unpacking fontconfig-config (2.15.0-2.4ubuntu1) ... 143s Selecting previously unselected package fonts-dejavu-extra. 143s Preparing to unpack .../15-fonts-dejavu-extra_2.37-8build1_all.deb ... 143s Unpacking fonts-dejavu-extra (2.37-8build1) ... 143s Selecting previously unselected package libfontconfig1:ppc64el. 143s Preparing to unpack .../16-libfontconfig1_2.15.0-2.4ubuntu1_ppc64el.deb ... 143s Unpacking libfontconfig1:ppc64el (2.15.0-2.4ubuntu1) ... 143s Selecting previously unselected package libpixman-1-0:ppc64el. 143s Preparing to unpack .../17-libpixman-1-0_0.46.4-1_ppc64el.deb ... 143s Unpacking libpixman-1-0:ppc64el (0.46.4-1) ... 143s Selecting previously unselected package libxcb-render0:ppc64el. 143s Preparing to unpack .../18-libxcb-render0_1.17.0-2build1_ppc64el.deb ... 143s Unpacking libxcb-render0:ppc64el (1.17.0-2build1) ... 143s Selecting previously unselected package libxcb-shm0:ppc64el. 143s Preparing to unpack .../19-libxcb-shm0_1.17.0-2build1_ppc64el.deb ... 143s Unpacking libxcb-shm0:ppc64el (1.17.0-2build1) ... 143s Selecting previously unselected package libxrender1:ppc64el. 143s Preparing to unpack .../20-libxrender1_1%3a0.9.12-1_ppc64el.deb ... 143s Unpacking libxrender1:ppc64el (1:0.9.12-1) ... 143s Selecting previously unselected package libcairo2:ppc64el. 143s Preparing to unpack .../21-libcairo2_1.18.4-3_ppc64el.deb ... 143s Unpacking libcairo2:ppc64el (1.18.4-3) ... 144s Selecting previously unselected package libdeflate0:ppc64el. 144s Preparing to unpack .../22-libdeflate0_1.23-2_ppc64el.deb ... 144s Unpacking libdeflate0:ppc64el (1.23-2) ... 144s Selecting previously unselected package libgomp1:ppc64el. 144s Preparing to unpack .../23-libgomp1_15.2.0-11ubuntu1_ppc64el.deb ... 144s Unpacking libgomp1:ppc64el (15.2.0-11ubuntu1) ... 144s Selecting previously unselected package libgraphite2-3:ppc64el. 144s Preparing to unpack .../24-libgraphite2-3_1.3.14-11ubuntu1_ppc64el.deb ... 144s Unpacking libgraphite2-3:ppc64el (1.3.14-11ubuntu1) ... 144s Selecting previously unselected package libharfbuzz0b:ppc64el. 144s Preparing to unpack .../25-libharfbuzz0b_12.3.0-4_ppc64el.deb ... 144s Unpacking libharfbuzz0b:ppc64el (12.3.0-4) ... 144s Selecting previously unselected package libimagequant0:ppc64el. 144s Preparing to unpack .../26-libimagequant0_2.18.0-1build1_ppc64el.deb ... 144s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 144s Selecting previously unselected package libjpeg-turbo8:ppc64el. 144s Preparing to unpack .../27-libjpeg-turbo8_2.1.5-4ubuntu2_ppc64el.deb ... 144s Unpacking libjpeg-turbo8:ppc64el (2.1.5-4ubuntu2) ... 144s Selecting previously unselected package libjpeg8:ppc64el. 144s Preparing to unpack .../28-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 144s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 144s Selecting previously unselected package libjs-jquery. 144s Preparing to unpack .../29-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 144s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 144s Selecting previously unselected package liblcms2-2:ppc64el. 144s Preparing to unpack .../30-liblcms2-2_2.17-1_ppc64el.deb ... 144s Unpacking liblcms2-2:ppc64el (2.17-1) ... 144s Selecting previously unselected package liblerc4:ppc64el. 144s Preparing to unpack .../31-liblerc4_4.0.0+ds-5ubuntu2_ppc64el.deb ... 144s Unpacking liblerc4:ppc64el (4.0.0+ds-5ubuntu2) ... 144s Selecting previously unselected package libraqm0:ppc64el. 144s Preparing to unpack .../32-libraqm0_0.10.3-1_ppc64el.deb ... 144s Unpacking libraqm0:ppc64el (0.10.3-1) ... 144s Selecting previously unselected package libsharpyuv0:ppc64el. 144s Preparing to unpack .../33-libsharpyuv0_1.5.0-0.1build1_ppc64el.deb ... 144s Unpacking libsharpyuv0:ppc64el (1.5.0-0.1build1) ... 144s Selecting previously unselected package libjbig0:ppc64el. 144s Preparing to unpack .../34-libjbig0_2.1-6.1ubuntu3_ppc64el.deb ... 144s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu3) ... 144s Selecting previously unselected package libwebp7:ppc64el. 144s Preparing to unpack .../35-libwebp7_1.5.0-0.1build1_ppc64el.deb ... 144s Unpacking libwebp7:ppc64el (1.5.0-0.1build1) ... 144s Selecting previously unselected package libtiff6:ppc64el. 144s Preparing to unpack .../36-libtiff6_4.7.0-3ubuntu3_ppc64el.deb ... 144s Unpacking libtiff6:ppc64el (4.7.0-3ubuntu3) ... 144s Selecting previously unselected package libwebpdemux2:ppc64el. 144s Preparing to unpack .../37-libwebpdemux2_1.5.0-0.1build1_ppc64el.deb ... 144s Unpacking libwebpdemux2:ppc64el (1.5.0-0.1build1) ... 144s Selecting previously unselected package libwebpmux3:ppc64el. 144s Preparing to unpack .../38-libwebpmux3_1.5.0-0.1build1_ppc64el.deb ... 144s Unpacking libwebpmux3:ppc64el (1.5.0-0.1build1) ... 144s Selecting previously unselected package python-biopython-doc. 144s Preparing to unpack .../39-python-biopython-doc_1.86+dfsg-1_all.deb ... 144s Unpacking python-biopython-doc (1.86+dfsg-1) ... 144s Selecting previously unselected package python3-all. 144s Preparing to unpack .../40-python3-all_3.14.2-1_ppc64el.deb ... 144s Unpacking python3-all (3.14.2-1) ... 144s Selecting previously unselected package python3-charset-normalizer. 144s Preparing to unpack .../41-python3-charset-normalizer_3.4.4-2_ppc64el.deb ... 144s Unpacking python3-charset-normalizer (3.4.4-2) ... 144s Selecting previously unselected package libopenjp2-7:ppc64el. 144s Preparing to unpack .../42-libopenjp2-7_2.5.4-1_ppc64el.deb ... 144s Unpacking libopenjp2-7:ppc64el (2.5.4-1) ... 144s Selecting previously unselected package python3-pil:ppc64el. 144s Preparing to unpack .../43-python3-pil_12.0.0-1ubuntu1_ppc64el.deb ... 144s Unpacking python3-pil:ppc64el (12.0.0-1ubuntu1) ... 144s Selecting previously unselected package python3-cairo. 144s Preparing to unpack .../44-python3-cairo_1.27.0-2build1_ppc64el.deb ... 144s Unpacking python3-cairo (1.27.0-2build1) ... 144s Selecting previously unselected package python3-freetype. 144s Preparing to unpack .../45-python3-freetype_2.5.1-2_all.deb ... 144s Unpacking python3-freetype (2.5.1-2) ... 144s Selecting previously unselected package python3-rlpycairo. 144s Preparing to unpack .../46-python3-rlpycairo_0.3.0-4_all.deb ... 144s Unpacking python3-rlpycairo (0.3.0-4) ... 144s Selecting previously unselected package python3-reportlab. 144s Preparing to unpack .../47-python3-reportlab_4.4.9-1_all.deb ... 144s Unpacking python3-reportlab (4.4.9-1) ... 144s Selecting previously unselected package sgml-base. 144s Preparing to unpack .../48-sgml-base_1.31+nmu1_all.deb ... 144s Unpacking sgml-base (1.31+nmu1) ... 144s Selecting previously unselected package xml-core. 144s Preparing to unpack .../49-xml-core_0.19build1_all.deb ... 144s Unpacking xml-core (0.19build1) ... 145s Selecting previously unselected package w3c-sgml-lib. 145s Preparing to unpack .../50-w3c-sgml-lib_1.3-3build1_all.deb ... 145s Unpacking w3c-sgml-lib (1.3-3build1) ... 145s Selecting previously unselected package python3-biopython. 145s Preparing to unpack .../51-python3-biopython_1.86+dfsg-1_ppc64el.deb ... 145s Unpacking python3-biopython (1.86+dfsg-1) ... 145s Selecting previously unselected package python3-biopython-sql. 145s Preparing to unpack .../52-python3-biopython-sql_1.86+dfsg-1_all.deb ... 145s Unpacking python3-biopython-sql (1.86+dfsg-1) ... 145s Setting up libgraphite2-3:ppc64el (1.3.14-11ubuntu1) ... 145s Setting up liblcms2-2:ppc64el (2.17-1) ... 145s Setting up libpixman-1-0:ppc64el (0.46.4-1) ... 145s Setting up libsharpyuv0:ppc64el (1.5.0-0.1build1) ... 145s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu2) ... 145s Setting up libxrender1:ppc64el (1:0.9.12-1) ... 145s Setting up libxcb-render0:ppc64el (1.17.0-2build1) ... 145s Setting up python3-charset-normalizer (3.4.4-2) ... 145s Setting up x11-common (1:7.7+24ubuntu1) ... 146s Setting up libdeflate0:ppc64el (1.23-2) ... 146s Setting up libxcb-shm0:ppc64el (1.17.0-2build1) ... 146s Setting up libgomp1:ppc64el (15.2.0-11ubuntu1) ... 146s Setting up python3-freetype (2.5.1-2) ... 146s Setting up libjbig0:ppc64el (2.1-6.1ubuntu3) ... 146s Setting up libfontenc1:ppc64el (1:1.1.8-1build2) ... 146s Setting up libblas3:ppc64el (3.12.1-7ubuntu1) ... 146s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 146s Setting up xfonts-encodings (1:1.0.5-0ubuntu3) ... 146s Setting up libimagequant0:ppc64el (2.18.0-1build1) ... 146s Setting up fonts-dejavu-mono (2.37-8build1) ... 146s Setting up python3-numpy-dev:ppc64el (1:2.3.5+ds-3) ... 146s Setting up fonts-dejavu-core (2.37-8build1) ... 146s Setting up libjpeg-turbo8:ppc64el (2.1.5-4ubuntu2) ... 146s Setting up libgfortran5:ppc64el (15.2.0-11ubuntu1) ... 146s Setting up libwebp7:ppc64el (1.5.0-0.1build1) ... 146s Setting up fonts-dejavu-extra (2.37-8build1) ... 146s Setting up libopenjp2-7:ppc64el (2.5.4-1) ... 146s Setting up python3.13-minimal (3.13.11-1) ... 147s Setting up libharfbuzz0b:ppc64el (12.3.0-4) ... 147s Setting up sgml-base (1.31+nmu1) ... 147s Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 147s Setting up libwebpmux3:ppc64el (1.5.0-0.1build1) ... 147s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 147s Setting up liblapack3:ppc64el (3.12.1-7ubuntu1) ... 147s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 147s Setting up python3.13 (3.13.11-1) ... 148s Setting up fontconfig-config (2.15.0-2.4ubuntu1) ... 148s Setting up libwebpdemux2:ppc64el (1.5.0-0.1build1) ... 148s Setting up python3-all (3.14.2-1) ... 148s Setting up xfonts-utils (1:7.7+7build1) ... 148s Setting up libraqm0:ppc64el (0.10.3-1) ... 148s Setting up python3-numpy (1:2.3.5+ds-3) ... 152s Setting up python-biopython-doc (1.86+dfsg-1) ... 152s Setting up libtiff6:ppc64el (4.7.0-3ubuntu3) ... 152s Setting up xml-core (0.19build1) ... 152s Setting up libfontconfig1:ppc64el (2.15.0-2.4ubuntu1) ... 152s Setting up fonts-urw-base35 (20200910-8build1) ... 152s Setting up libcairo2:ppc64el (1.18.4-3) ... 152s Setting up python3-pil:ppc64el (12.0.0-1ubuntu1) ... 153s Setting up python3-cairo (1.27.0-2build1) ... 153s Setting up python3-rlpycairo (0.3.0-4) ... 153s Setting up python3-reportlab (4.4.9-1) ... 155s Processing triggers for libc-bin (2.42-2ubuntu4) ... 155s Processing triggers for systemd (259-1ubuntu2) ... 155s Processing triggers for man-db (2.13.1-1) ... 157s Processing triggers for sgml-base (1.31+nmu1) ... 157s Setting up w3c-sgml-lib (1.3-3build1) ... 186s Setting up python3-biopython (1.86+dfsg-1) ... 188s Setting up python3-biopython-sql (1.86+dfsg-1) ... 189s autopkgtest [20:27:55]: test dependencies: sh debian/tests/run-unit-test 189s autopkgtest [20:27:55]: test dependencies: [----------------------- 189s cp: cannot stat '/usr/share/libcifpp/mmcif_pdbx.dic': No such file or directory 189s cp: cannot stat '/usr/share/libcifpp/mmcif_ma.dic': No such file or directory 192s mkdir: created directory 'Bio' 192s mkdir: created directory 'Bio/Align' 192s mkdir: created directory 'Bio/Align/substitution_matrices' 192s mkdir: created directory 'Bio/Align/substitution_matrices/data/' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER22' -> 'Bio/Align/substitution_matrices/data/BENNER22' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER6' -> 'Bio/Align/substitution_matrices/data/BENNER6' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER74' -> 'Bio/Align/substitution_matrices/data/BENNER74' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLASTN' -> 'Bio/Align/substitution_matrices/data/BLASTN' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLASTP' -> 'Bio/Align/substitution_matrices/data/BLASTP' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM45' -> 'Bio/Align/substitution_matrices/data/BLOSUM45' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM50' -> 'Bio/Align/substitution_matrices/data/BLOSUM50' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM62' -> 'Bio/Align/substitution_matrices/data/BLOSUM62' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM80' -> 'Bio/Align/substitution_matrices/data/BLOSUM80' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM90' -> 'Bio/Align/substitution_matrices/data/BLOSUM90' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/DAYHOFF' -> 'Bio/Align/substitution_matrices/data/DAYHOFF' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/FENG' -> 'Bio/Align/substitution_matrices/data/FENG' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/GENETIC' -> 'Bio/Align/substitution_matrices/data/GENETIC' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/GONNET1992' -> 'Bio/Align/substitution_matrices/data/GONNET1992' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/HOXD70' -> 'Bio/Align/substitution_matrices/data/HOXD70' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/JOHNSON' -> 'Bio/Align/substitution_matrices/data/JOHNSON' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/JONES' -> 'Bio/Align/substitution_matrices/data/JONES' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/LEVIN' -> 'Bio/Align/substitution_matrices/data/LEVIN' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MCLACHLAN' -> 'Bio/Align/substitution_matrices/data/MCLACHLAN' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MDM78' -> 'Bio/Align/substitution_matrices/data/MDM78' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MEGABLAST' -> 'Bio/Align/substitution_matrices/data/MEGABLAST' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/NUC.4.4' -> 'Bio/Align/substitution_matrices/data/NUC.4.4' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM250' -> 'Bio/Align/substitution_matrices/data/PAM250' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM30' -> 'Bio/Align/substitution_matrices/data/PAM30' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM70' -> 'Bio/Align/substitution_matrices/data/PAM70' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/RAO' -> 'Bio/Align/substitution_matrices/data/RAO' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/RISLER' -> 'Bio/Align/substitution_matrices/data/RISLER' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/SCHNEIDER' -> 'Bio/Align/substitution_matrices/data/SCHNEIDER' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/STR' -> 'Bio/Align/substitution_matrices/data/STR' 192s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/TRANS' -> 'Bio/Align/substitution_matrices/data/TRANS' 192s test_Ace ... ok 192s test_Affy ... ok 193s test_AlignIO ... ok 193s test_AlignIO_ClustalIO ... ok 193s test_AlignIO_EmbossIO ... ok 193s test_AlignIO_FastaIO ... ok 193s test_AlignIO_MauveIO ... ok 193s test_AlignIO_PhylipIO ... ok 193s test_AlignIO_convert ... ok 193s test_Align_Alignment ... ok 193s test_Align_a2m ... ok 193s test_Align_bed ... ok 194s test_Align_bigbed ... ok 194s test_Align_bigmaf ... ok 195s test_Align_bigpsl ... ok 195s test_Align_chain ... ok 195s test_Align_clustal ... ok 199s test_Align_codonalign ... ok 199s test_Align_emboss ... ok 199s test_Align_exonerate ... ok 199s test_Align_fasta ... ok 199s test_Align_format_matrix ... ok 200s test_Align_hhr ... ok 201s test_Align_maf ... ok 201s test_Align_mauve ... ok 201s test_Align_msf ... ok 201s test_Align_nexus ... ok 201s test_Align_phylip ... ok 202s test_Align_psl ... ok 202s test_Align_sam ... ok 204s test_Align_stockholm ... ok 205s test_Align_tabular ... ok 205s test_BioSQL_MySQLdb_online ... skipping. internet not available 205s test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample) 205s test_BioSQL_mysql_connector_online ... skipping. internet not available 205s test_BioSQL_psycopg2_online ... skipping. internet not available 210s test_BioSQL_sqlite3 ... ok 210s test_BioSQL_sqlite3_online ... skipping. internet not available 210s test_Blast_Record ... ok 211s test_Blast_parser ... ok 211s test_CAPS ... ok 211s test_Chi2 ... ok 211s test_Cluster ... ok 211s test_CodonTable ... ok 211s test_ColorSpiral ... ok 211s test_Compass ... ok 213s test_Consensus ... ok 213s test_EMBL_unittest ... ok 213s test_EmbossPrimer ... ok 217s test_Entrez ... ok 217s test_Entrez_online ... skipping. internet not available 218s test_Entrez_parser ... ok 218s test_Enzyme ... ok 218s test_ExPASy ... skipping. internet not available 218s test_File ... ok 218s test_GenBank ... ok 220s test_GenomeDiagram ... Warn: Can't find .pfb for face 'Helvetica' 223s ok 223s test_GraphicsChromosome ... ok 223s test_GraphicsDistribution ... ok 224s test_GraphicsGeneral ... ok 224s test_KEGG ... ok 225s test_KEGG_online ... skipping. internet not available 230s test_KGML_graphics ... ok 230s test_KGML_graphics_online ... skipping. internet not available 231s test_KGML_nographics ... ok 231s test_KeyWList ... ok 232s test_MafIO_index ... ok 232s test_Medline ... ok 233s test_NCBIXML ... Exception ignored in: 233s Traceback (most recent call last): 233s File "/usr/lib/python3/dist-packages/Bio/Blast/NCBIXML.py", line 1319, in parse 233s expat_parser.Parse(NULL, True) 233s xml.parsers.expat.ExpatError: unclosed token: line 320, column 0 233s ok 233s test_NCBI_qblast ... ok 233s test_NMR ... ok 233s test_Nexus ... ok 233s test_PAML_baseml ... ok 234s test_PAML_codeml ... ok 234s test_PAML_yn00 ... ok 239s test_PDB_CEAligner ... ok 239s test_PDB_DSSP ... ok 239s test_PDB_Dice ... ok 239s test_PDB_Disordered ... ok 239s test_PDB_Exposure ... ok 239s test_PDB_FragmentMapper ... ok 242s test_PDB_KDTree ... ok 242s test_PDB_MMCIF2Dict ... ok 242s test_PDB_MMCIFIO ... ok 243s test_PDB_MMCIFParser ... ok 243s test_PDB_NACCESS ... ok 244s test_PDB_PDBIO ... ok 244s test_PDB_PDBList ... skipping. internet not available 251s test_PDB_PDBMLParser ... ok 251s test_PDB_PDBParser ... ok 251s test_PDB_PSEA ... skipping. Download and install psea from ftp://ftp.lmcp.jussieu.fr/pub/sincris/software/protein/p-sea/. Make sure that psea is on path 251s test_PDB_Polypeptide ... ok 251s test_PDB_QCPSuperimposer ... ok 254s test_PDB_SASA ... ok 255s test_PDB_SMCRA ... ok 255s test_PDB_Selection ... ok 256s test_PDB_StructureAlignment ... ok 256s test_PDB_Superimposer ... ok 256s test_PDB_alphafold_db ... skipping. internet not available 256s test_PDB_binary_cif ... skipping. Error: Install msgpack to use Bio.PDB.binaryCIF (e.g. pip install msgpack) 256s 256s test_PDB_internal_coords ... skipping. Error: Install mmtf to use Bio.PDB.mmtf (e.g. pip install mmtf-python) 256s 257s test_PDB_parse_pdb_header ... ok 257s test_PDB_vectors ... ok 257s test_PQR ... ok 257s test_Pathway ... ok 257s test_Phd ... ok 257s test_Phylo ... ok 257s test_PhyloXML ... ok 257s test_Phylo_CDAO ... skipping. Install RDFlib if you want to use the CDAO tree format. 258s test_Phylo_NeXML ... ok 258s test_Phylo_igraph ... skipping. Install igraph if you wish to use it with Bio.Phylo 258s test_Phylo_matplotlib ... skipping. Install matplotlib if you want to use Bio.Phylo._utils. 258s test_Phylo_networkx ... skipping. Install networkx if you wish to use it with Bio.Phylo 258s test_PopGen_GenePop_nodepend ... ok 258s test_ProtParam ... ok 258s test_RCSBFormats ... ok 258s test_Restriction ... ok 258s test_SCOP_Astral ... ok 258s test_SCOP_Cla ... ok 258s test_SCOP_Des ... ok 258s test_SCOP_Dom ... ok 258s test_SCOP_Hie ... ok 258s test_SCOP_Raf ... ok 258s test_SCOP_Residues ... ok 258s test_SCOP_Scop ... ok 258s test_SVDSuperimposer ... ok 259s test_SearchIO_blast_tab ... ok 259s test_SearchIO_blast_tab_index ... ok 259s test_SearchIO_blast_xml ... ok 260s test_SearchIO_blast_xml_index ... ok 260s test_SearchIO_blat_psl ... ok 260s test_SearchIO_blat_psl_index ... ok 260s test_SearchIO_exonerate ... ok 260s test_SearchIO_exonerate_text_index ... ok 260s test_SearchIO_exonerate_vulgar_index ... ok 260s test_SearchIO_fasta_m10 ... ok 261s test_SearchIO_fasta_m10_index ... ok 261s test_SearchIO_hhsuite2_text ... ok 261s test_SearchIO_hmmer2_text ... ok 261s test_SearchIO_hmmer2_text_index ... ok 261s test_SearchIO_hmmer3_domtab ... ok 261s test_SearchIO_hmmer3_domtab_index ... ok 261s test_SearchIO_hmmer3_tab ... ok 261s test_SearchIO_hmmer3_tab_index ... ok 261s test_SearchIO_hmmer3_text ... ok 261s test_SearchIO_hmmer3_text_index ... ok 261s test_SearchIO_infernal_tab ... ok 261s test_SearchIO_infernal_tab_index ... ok 261s test_SearchIO_infernal_text ... ok 261s test_SearchIO_infernal_text_index ... ok 262s test_SearchIO_interproscan_xml ... ok 262s test_SearchIO_model ... ok 262s test_SearchIO_write ... ok 262s test_SeqFeature ... ok 283s test_SeqIO ... ok 283s test_SeqIO_AbiIO ... ok 283s test_SeqIO_FastaIO ... ok 283s test_SeqIO_Gck ... ok 283s test_SeqIO_Gfa ... ok 283s test_SeqIO_Insdc ... ok 283s test_SeqIO_NibIO ... ok 285s test_SeqIO_PdbIO ... ok 286s test_SeqIO_QualityIO ... ok 286s test_SeqIO_SeqXML ... ok 286s test_SeqIO_SffIO ... ok 286s test_SeqIO_SnapGene ... ok 287s test_SeqIO_TwoBitIO ... ok 287s test_SeqIO_UniprotIO ... ok 287s test_SeqIO_Xdna ... ok 288s test_SeqIO_features ... ok 306s test_SeqIO_index ... ok 306s test_SeqIO_online ... skipping. internet not available 306s test_SeqIO_write ... ok 306s test_SeqRecord ... ok 306s test_SeqUtils ... ok 308s test_Seq_objs ... ok 308s test_SwissProt ... ok 308s test_TogoWS ... skipping. internet not available 308s test_TreeConstruction ... ok 308s test_Tutorial ... skipping. Could not find ../Doc/Tutorial/index.rst file 308s test_UniGene ... ok 308s test_UniProt ... skipping. internet not available 308s test_UniProt_GOA ... ok 309s test_align ... ok 309s test_align_substitution_matrices ... ok 311s test_bgzf ... ok 312s test_cellosaurus ... ok 317s test_codonalign ... ok 317s test_geo ... ok 318s test_motifs ... ok 318s test_motifs_online ... skipping. internet not available 318s test_pairwise2 ... /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. 318s warnings.warn( 318s ok 318s test_pairwise2_no_C ... ok 318s test_pairwise_aligner ... ok 318s test_pairwise_alignment_map ... ok 326s test_phenotype ... ok 326s test_phenotype_fit ... skipping. Install SciPy if you want to use Bio.phenotype fit functionality. 326s test_prodoc ... ok 326s test_prosite ... ok 326s test_seq ... ok 326s test_translate ... ok 326s ---------------------------------------------------------------------- 326s Ran 201 tests in 134.075 seconds 326s 326s Skipping any tests requiring internet access 326s Python version: 3.13.11 (main, Dec 6 2025, 13:15:20) [GCC 15.2.0] 326s Operating system: posix linux 327s :0: ResourceWarning: unclosed file <_io.TextIOWrapper name='Fasta/protein_lib.fa' mode='rt' encoding='UTF-8'> 327s :0: ResourceWarning: unclosed file <_io.TextIOWrapper name='Fasta/nucleotide_lib.fa' mode='rt' encoding='UTF-8'> 327s test_Ace ... ok 327s test_Affy ... ok 327s test_AlignIO ... ok 327s test_AlignIO_ClustalIO ... ok 327s test_AlignIO_EmbossIO ... ok 327s test_AlignIO_FastaIO ... ok 327s test_AlignIO_MauveIO ... ok 327s test_AlignIO_PhylipIO ... ok 328s test_AlignIO_convert ... ok 328s test_Align_Alignment ... ok 328s test_Align_a2m ... ok 328s test_Align_bed ... ok 328s test_Align_bigbed ... ok 329s test_Align_bigmaf ... ok 330s test_Align_bigpsl ... ok 330s test_Align_chain ... ok 330s test_Align_clustal ... ok 334s test_Align_codonalign ... ok 334s test_Align_emboss ... ok 334s test_Align_exonerate ... ok 334s test_Align_fasta ... ok 334s test_Align_format_matrix ... ok 335s test_Align_hhr ... ok 337s test_Align_maf ... ok 337s test_Align_mauve ... ok 337s test_Align_msf ... ok 337s test_Align_nexus ... ok 337s test_Align_phylip ... ok 337s test_Align_psl ... ok 338s test_Align_sam ... ok 340s test_Align_stockholm ... ok 341s test_Align_tabular ... ok 341s test_BioSQL_MySQLdb_online ... skipping. internet not available 341s test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample) 341s test_BioSQL_mysql_connector_online ... skipping. internet not available 341s test_BioSQL_psycopg2_online ... skipping. internet not available 346s test_BioSQL_sqlite3 ... ok 346s test_BioSQL_sqlite3_online ... skipping. internet not available 346s test_Blast_Record ... ok 347s test_Blast_parser ... ok 347s test_CAPS ... ok 347s test_Chi2 ... ok 347s test_Cluster ... ok 347s test_CodonTable ... ok 347s test_ColorSpiral ... ok 348s test_Compass ... ok 349s test_Consensus ... ok 349s test_EMBL_unittest ... ok 349s test_EmbossPrimer ... ok 353s test_Entrez ... ok 353s test_Entrez_online ... skipping. internet not available 354s test_Entrez_parser ... ok 354s test_Enzyme ... ok 354s test_ExPASy ... skipping. internet not available 354s test_File ... ok 354s test_GenBank ... ok 357s test_GenomeDiagram ... Warn: Can't find .pfb for face 'Helvetica' 359s ok 360s test_GraphicsChromosome ... ok 360s test_GraphicsDistribution ... ok 361s test_GraphicsGeneral ... ok 361s test_KEGG ... ok 361s test_KEGG_online ... skipping. internet not available 367s test_KGML_graphics ... ok 367s test_KGML_graphics_online ... skipping. internet not available 367s test_KGML_nographics ... ok 368s test_KeyWList ... ok 369s test_MafIO_index ... ok 369s test_Medline ... ok 370s test_NCBIXML ... Exception ignored while closing generator : 370s Traceback (most recent call last): 370s File "/usr/lib/python3/dist-packages/Bio/Blast/NCBIXML.py", line 1319, in parse 370s expat_parser.Parse(NULL, True) 370s xml.parsers.expat.ExpatError: unclosed token: line 320, column 0 370s ok 370s test_NCBI_qblast ... ok 370s test_NMR ... ok 370s test_Nexus ... ok 370s test_PAML_baseml ... ok 371s test_PAML_codeml ... ok 371s test_PAML_yn00 ... ok 375s test_PDB_CEAligner ... ok 376s test_PDB_DSSP ... ok 376s test_PDB_Dice ... ok 376s test_PDB_Disordered ... ok 376s test_PDB_Exposure ... ok 376s test_PDB_FragmentMapper ... ok 379s test_PDB_KDTree ... ok 379s test_PDB_MMCIF2Dict ... ok 379s test_PDB_MMCIFIO ... ok 380s test_PDB_MMCIFParser ... ok 380s test_PDB_NACCESS ... ok 381s test_PDB_PDBIO ... ok 381s test_PDB_PDBList ... skipping. internet not available 387s test_PDB_PDBMLParser ... ok 387s test_PDB_PDBParser ... ok 387s test_PDB_PSEA ... skipping. Download and install psea from ftp://ftp.lmcp.jussieu.fr/pub/sincris/software/protein/p-sea/. Make sure that psea is on path 387s test_PDB_Polypeptide ... ok 387s test_PDB_QCPSuperimposer ... ok 391s test_PDB_SASA ... ok 392s test_PDB_SMCRA ... ok 392s test_PDB_Selection ... ok 393s test_PDB_StructureAlignment ... ok 393s test_PDB_Superimposer ... ok 393s test_PDB_alphafold_db ... skipping. internet not available 393s test_PDB_binary_cif ... skipping. Error: Install msgpack to use Bio.PDB.binaryCIF (e.g. pip install msgpack) 393s 393s test_PDB_internal_coords ... skipping. Error: Install mmtf to use Bio.PDB.mmtf (e.g. pip install mmtf-python) 393s 393s test_PDB_parse_pdb_header ... ok 393s test_PDB_vectors ... ok 394s test_PQR ... ok 394s test_Pathway ... ok 394s test_Phd ... ok 394s test_Phylo ... ok 394s test_PhyloXML ... ok 394s test_Phylo_CDAO ... skipping. Install RDFlib if you want to use the CDAO tree format. 395s test_Phylo_NeXML ... ok 395s test_Phylo_igraph ... skipping. Install igraph if you wish to use it with Bio.Phylo 395s test_Phylo_matplotlib ... skipping. Install matplotlib if you want to use Bio.Phylo._utils. 395s test_Phylo_networkx ... skipping. Install networkx if you wish to use it with Bio.Phylo 395s test_PopGen_GenePop_nodepend ... ok 395s test_ProtParam ... ok 395s test_RCSBFormats ... ok 395s test_Restriction ... ok 395s test_SCOP_Astral ... ok 396s test_SCOP_Cla ... ok 396s test_SCOP_Des ... ok 396s test_SCOP_Dom ... ok 396s test_SCOP_Hie ... ok 396s test_SCOP_Raf ... ok 396s test_SCOP_Residues ... ok 396s test_SCOP_Scop ... ok 396s test_SVDSuperimposer ... ok 396s test_SearchIO_blast_tab ... ok 396s test_SearchIO_blast_tab_index ... ok 396s test_SearchIO_blast_xml ... ok 398s test_SearchIO_blast_xml_index ... ok 398s test_SearchIO_blat_psl ... ok 398s test_SearchIO_blat_psl_index ... ok 398s test_SearchIO_exonerate ... ok 398s test_SearchIO_exonerate_text_index ... ok 398s test_SearchIO_exonerate_vulgar_index ... ok 398s test_SearchIO_fasta_m10 ... ok 398s test_SearchIO_fasta_m10_index ... ok 398s test_SearchIO_hhsuite2_text ... ok 398s test_SearchIO_hmmer2_text ... ok 399s test_SearchIO_hmmer2_text_index ... ok 399s test_SearchIO_hmmer3_domtab ... ok 399s test_SearchIO_hmmer3_domtab_index ... ok 399s test_SearchIO_hmmer3_tab ... ok 399s test_SearchIO_hmmer3_tab_index ... ok 399s test_SearchIO_hmmer3_text ... ok 399s test_SearchIO_hmmer3_text_index ... ok 399s test_SearchIO_infernal_tab ... ok 399s test_SearchIO_infernal_tab_index ... ok 399s test_SearchIO_infernal_text ... ok 399s test_SearchIO_infernal_text_index ... ok 399s test_SearchIO_interproscan_xml ... ok 399s test_SearchIO_model ... ok 400s test_SearchIO_write ... ok 400s test_SeqFeature ... ok 417s test_SeqIO ... ok 417s test_SeqIO_AbiIO ... ok 418s test_SeqIO_FastaIO ... ok 418s test_SeqIO_Gck ... ok 418s test_SeqIO_Gfa ... ok 418s test_SeqIO_Insdc ... ok 418s test_SeqIO_NibIO ... ok 420s test_SeqIO_PdbIO ... ok 420s test_SeqIO_QualityIO ... ok 420s test_SeqIO_SeqXML ... ok 420s test_SeqIO_SffIO ... ok 420s test_SeqIO_SnapGene ... ok 421s test_SeqIO_TwoBitIO ... ok 422s test_SeqIO_UniprotIO ... ok 422s test_SeqIO_Xdna ... ok 424s test_SeqIO_features ... ok 442s test_SeqIO_index ... ok 442s test_SeqIO_online ... skipping. internet not available 442s test_SeqIO_write ... ok 442s test_SeqRecord ... ok 442s test_SeqUtils ... ok 444s test_Seq_objs ... ok 444s test_SwissProt ... ok 444s test_TogoWS ... skipping. internet not available 445s test_TreeConstruction ... ok 445s test_Tutorial ... skipping. Could not find ../Doc/Tutorial/index.rst file 445s test_UniGene ... ok 445s test_UniProt ... skipping. internet not available 445s test_UniProt_GOA ... ok 445s test_align ... ok 445s test_align_substitution_matrices ... ok 448s test_bgzf ... ok 448s test_cellosaurus ... ok 454s test_codonalign ... ok 454s test_geo ... ok 454s test_motifs ... ok 454s test_motifs_online ... skipping. internet not available 454s test_pairwise2 ... /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. 454s warnings.warn( 454s ok 454s test_pairwise2_no_C ... ok 455s test_pairwise_aligner ... ok 455s test_pairwise_alignment_map ... ok 463s test_phenotype ... ok 463s test_phenotype_fit ... skipping. Install SciPy if you want to use Bio.phenotype fit functionality. 463s test_prodoc ... ok 463s test_prosite ... ok 463s test_seq ... ok 463s test_translate ... ok 463s ---------------------------------------------------------------------- 463s Ran 201 tests in 136.141 seconds 463s 463s Skipping any tests requiring internet access 463s Python version: 3.14.2 (main, Dec 6 2025, 13:20:08) [GCC 15.2.0] 463s Operating system: posix linux 463s :0: ResourceWarning: unclosed file <_io.TextIOWrapper name='Fasta/protein_lib.fa' mode='rt' encoding='UTF-8'> 463s :0: ResourceWarning: unclosed file <_io.TextIOWrapper name='Fasta/nucleotide_lib.fa' mode='rt' encoding='UTF-8'> 464s autopkgtest [20:32:30]: test dependencies: -----------------------] 464s autopkgtest [20:32:30]: test dependencies: - - - - - - - - - - results - - - - - - - - - - 464s dependencies PASS 465s autopkgtest [20:32:31]: test full_suite: preparing testbed 484s Creating nova instance adt-resolute-ppc64el-python-biopython-20260122-201340-juju-7f2275-prod-proposed-migration-environment-20-4b21fe92-9a96-4318-a3a3-2ba59e27364f from image adt/ubuntu-resolute-ppc64el-server-20260122.img (UUID 987e5803-394f-43eb-a969-151b6b75a57a)... 536s autopkgtest [20:33:42]: testbed dpkg architecture: ppc64el 536s autopkgtest [20:33:42]: testbed apt version: 3.1.12 537s autopkgtest [20:33:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup 537s autopkgtest [20:33:43]: testbed release detected to be: resolute 538s autopkgtest [20:33:44]: updating testbed package index (apt update) 538s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 538s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 538s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 538s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 538s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1011 kB] 538s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 538s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [81.6 kB] 539s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.2 kB] 539s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el Packages [100 kB] 539s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el Packages [703 kB] 539s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse ppc64el Packages [5552 B] 539s Fetched 2050 kB in 1s (2056 kB/s) 540s Reading package lists... 540s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 540s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 540s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 540s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 541s Reading package lists... 541s Reading package lists... 541s Building dependency tree... 541s Reading state information... 541s Calculating upgrade... 541s The following packages were automatically installed and are no longer required: 541s python3.13 python3.13-minimal 541s Use 'sudo apt autoremove' to remove them. 542s The following NEW packages will be installed: 542s libpython3.14-minimal libpython3.14-stdlib python3.14 python3.14-minimal 542s The following packages will be upgraded: 542s libplymouth5 libpython3-stdlib plymouth plymouth-theme-ubuntu-text python3 542s python3-gdbm python3-minimal 542s 7 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 542s Need to get 7312 kB of archives. 542s After this operation, 27.7 MB of additional disk space will be used. 542s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpython3.14-minimal ppc64el 3.14.2-1 [921 kB] 543s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.14-minimal ppc64el 3.14.2-1 [2712 kB] 546s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-gdbm ppc64el 3.14.2-1 [11.1 kB] 546s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-minimal ppc64el 3.14.2-1 [28.2 kB] 546s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3 ppc64el 3.14.2-1 [22.9 kB] 546s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpython3.14-stdlib ppc64el 3.14.2-1 [2444 kB] 549s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.14 ppc64el 3.14.2-1 [816 kB] 550s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libpython3-stdlib ppc64el 3.14.2-1 [10.9 kB] 550s Get:9 http://ftpmaster.internal/ubuntu resolute/main ppc64el libplymouth5 ppc64el 24.004.60+git20250831.4a3c171d-0ubuntu4 [174 kB] 550s Get:10 http://ftpmaster.internal/ubuntu resolute/main ppc64el plymouth-theme-ubuntu-text ppc64el 24.004.60+git20250831.4a3c171d-0ubuntu4 [11.2 kB] 550s Get:11 http://ftpmaster.internal/ubuntu resolute/main ppc64el plymouth ppc64el 24.004.60+git20250831.4a3c171d-0ubuntu4 [160 kB] 550s dpkg-preconfigure: unable to re-open stdin: No such file or directory 550s Fetched 7312 kB in 8s (875 kB/s) 550s Selecting previously unselected package libpython3.14-minimal:ppc64el. 550s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 120824 files and directories currently installed.) 550s Preparing to unpack .../libpython3.14-minimal_3.14.2-1_ppc64el.deb ... 550s Unpacking libpython3.14-minimal:ppc64el (3.14.2-1) ... 551s Selecting previously unselected package python3.14-minimal. 551s Preparing to unpack .../python3.14-minimal_3.14.2-1_ppc64el.deb ... 551s Unpacking python3.14-minimal (3.14.2-1) ... 551s Preparing to unpack .../python3-gdbm_3.14.2-1_ppc64el.deb ... 551s Unpacking python3-gdbm (3.14.2-1) over (3.13.9-1) ... 551s Setting up libpython3.14-minimal:ppc64el (3.14.2-1) ... 551s Setting up python3.14-minimal (3.14.2-1) ... 553s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121166 files and directories currently installed.) 553s Preparing to unpack .../python3-minimal_3.14.2-1_ppc64el.deb ... 553s Unpacking python3-minimal (3.14.2-1) over (3.13.7-1) ... 553s Setting up python3-minimal (3.14.2-1) ... 553s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121166 files and directories currently installed.) 553s Preparing to unpack .../0-python3_3.14.2-1_ppc64el.deb ... 553s running python pre-rtupdate hooks for python3.14... 553s Unpacking python3 (3.14.2-1) over (3.13.7-1) ... 553s Selecting previously unselected package libpython3.14-stdlib:ppc64el. 553s Preparing to unpack .../1-libpython3.14-stdlib_3.14.2-1_ppc64el.deb ... 553s Unpacking libpython3.14-stdlib:ppc64el (3.14.2-1) ... 553s Selecting previously unselected package python3.14. 553s Preparing to unpack .../2-python3.14_3.14.2-1_ppc64el.deb ... 553s Unpacking python3.14 (3.14.2-1) ... 553s Preparing to unpack .../3-libpython3-stdlib_3.14.2-1_ppc64el.deb ... 553s Unpacking libpython3-stdlib:ppc64el (3.14.2-1) over (3.13.7-1) ... 553s Preparing to unpack .../4-libplymouth5_24.004.60+git20250831.4a3c171d-0ubuntu4_ppc64el.deb ... 553s Unpacking libplymouth5:ppc64el (24.004.60+git20250831.4a3c171d-0ubuntu4) over (24.004.60+git20250831.4a3c171d-0ubuntu3) ... 553s Preparing to unpack .../5-plymouth-theme-ubuntu-text_24.004.60+git20250831.4a3c171d-0ubuntu4_ppc64el.deb ... 553s Unpacking plymouth-theme-ubuntu-text (24.004.60+git20250831.4a3c171d-0ubuntu4) over (24.004.60+git20250831.4a3c171d-0ubuntu3) ... 553s Preparing to unpack .../6-plymouth_24.004.60+git20250831.4a3c171d-0ubuntu4_ppc64el.deb ... 553s Unpacking plymouth (24.004.60+git20250831.4a3c171d-0ubuntu4) over (24.004.60+git20250831.4a3c171d-0ubuntu3) ... 553s Setting up libpython3.14-stdlib:ppc64el (3.14.2-1) ... 553s Setting up libplymouth5:ppc64el (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 553s Setting up python3.14 (3.14.2-1) ... 554s Setting up libpython3-stdlib:ppc64el (3.14.2-1) ... 554s Setting up python3-gdbm (3.14.2-1) ... 554s Setting up plymouth (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 554s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 555s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 555s Setting up python3 (3.14.2-1) ... 555s running python rtupdate hooks for python3.14... 555s running python post-rtupdate hooks for python3.14... 555s Processing triggers for libc-bin (2.42-2ubuntu4) ... 555s Processing triggers for systemd (259-1ubuntu2) ... 555s Processing triggers for man-db (2.13.1-1) ... 556s Processing triggers for initramfs-tools (0.150ubuntu7) ... 556s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 563s Setting up plymouth-theme-ubuntu-text (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 563s Processing triggers for initramfs-tools (0.150ubuntu7) ... 563s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 569s autopkgtest [20:34:14]: upgrading testbed (apt dist-upgrade and autopurge) 569s Reading package lists... 569s Building dependency tree... 569s Reading state information... 569s Calculating upgrade... 569s The following packages were automatically installed and are no longer required: 569s python3.13 python3.13-minimal 569s Use 'sudo apt autoremove' to remove them. 569s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 569s Reading package lists... 569s Building dependency tree... 569s Reading state information... 569s Solving dependencies... 569s The following packages will be REMOVED: 569s python3.13* python3.13-minimal* 570s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 570s After this operation, 9077 kB disk space will be freed. 570s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121596 files and directories currently installed.) 570s Removing python3.13 (3.13.11-1) ... 570s Removing python3.13-minimal (3.13.11-1) ... 571s Processing triggers for man-db (2.13.1-1) ... 571s Processing triggers for systemd (259-1ubuntu2) ... 571s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121569 files and directories currently installed.) 571s Purging configuration files for python3.13-minimal (3.13.11-1) ... 572s autopkgtest [20:34:18]: rebooting testbed after setup commands that affected boot 616s Reading package lists... 616s Building dependency tree... 616s Reading state information... 616s Solving dependencies... 616s The following NEW packages will be installed: 616s autoconf automake autopoint autotools-dev build-essential bwa clustalo cpp 616s cpp-15 cpp-15-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu debhelper 616s debugedit dh-autoreconf dh-python dh-strip-nondeterminism dialign 616s docutils-common dssp dwz emboss emboss-data emboss-lib fasttree flex 616s fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 616s fonts-font-awesome fonts-lato fonts-lmodern fonts-lyx fonts-urw-base35 g++ 616s g++-15 g++-15-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-15 616s gcc-15-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gettext ghostscript 616s hevea hicolor-icon-theme imagemagick imagemagick-7-common imagemagick-7.q16 616s intltool-debian libamd3 libaom3 libapache-pom-java libarchive-zip-perl 616s libargtable2-0 libarpack2t64 libasan8 libavahi-client3 libavahi-common-data 616s libavahi-common3 libblas3 libcairo2 libcc1-0 libcifpp-data libcifpp9 616s libcolamd3 libcommons-logging-java libcommons-parent-java libcups2t64 616s libde265-0 libdebhelper-perl libdeflate0 libexpat1-dev libfftw3-double3 616s libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfontenc1 616s libgcc-15-dev libgd3 libgfortran5 libglpk40 libgomp1 libgraphite2-3 616s libgs-common libgs10 libgs10-common libharfbuzz0b libheif-plugin-aomdec 616s libheif-plugin-libde265 libheif1 libhpdf-2.3.0 libice6 libidn12 libigraph4 616s libijs-0.35 libimagequant0 libisl23 libitm1 libjbig0 libjbig2dec0 616s libjpeg-turbo8 libjpeg8 libjs-jquery libjson-perl libkpathsea6 liblapack3 616s liblcms2-2 liblerc4 liblqr-1-0 liblsan0 libltdl7 libmagickcore-7.q16-10 616s libmagickwand-7.q16-10 libmbedcrypto16 libmbedtls21 libmbedx509-7 libmpc3 616s libmpfi0 libmysqlclient24 libnetpbm11t64 libopenjp2-7 libpaper-utils 616s libpaper2 libpdfbox-java libpixman-1-0 libplfit0 libpotrace0 libpq5 616s libptexenc1 libpython3-all-dev libpython3-dev libpython3.13-dev 616s libpython3.14 libpython3.14-dev libqhull-r8.0 libquadmath0 libraqm0 616s libraw23t64 libsharpyuv0 libsm6 libstdc++-15-dev libsuitesparseconfig7 616s libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libtiff6 libtk8.6 libtool 616s libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libxaw7 libxcb-render0 616s libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxslt1.1 libxss1 616s libxt6t64 libzopfli1 libzzip-0-13t64 lmodern m4 mafft mysql-common 616s ncbi-blast+ ncbi-data netpbm phylip po-debconf poppler-data prank 616s preview-latex-style probcons python-biopython-doc python-matplotlib-data 616s python3-alabaster python3-all python3-all-dev python3-biopython 616s python3-biopython-sql python3-brotli python3-cairo 616s python3-charset-normalizer python3-contourpy python3-cycler 616s python3-decorator python3-defusedxml python3-dev python3-docutils 616s python3-fonttools python3-freetype python3-igraph python3-imagesize 616s python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib python3-mmtf 616s python3-mpmath python3-msgpack python3-mysqldb python3-networkx 616s python3-numpy python3-numpy-dev python3-numpydoc python3-pil 616s python3-pil.imagetk python3-rdflib python3-reportlab python3-rlpycairo 616s python3-roman-numerals python3-scipy python3-snowballstemmer python3-sphinx 616s python3-sphinx-rtd-theme python3-sphinxcontrib.jquery python3-sympy 616s python3-texttable python3-tk python3-ufolib2 python3-zopfli python3.13 616s python3.13-dev python3.13-minimal python3.13-tk python3.14-dev python3.14-tk 616s sgml-base sphinx-common sphinx-rtd-theme-common t-coffee t1utils tex-common 616s texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base 616s texlive-latex-extra texlive-latex-recommended texlive-luatex 616s texlive-pictures unicode-data w3c-sgml-lib wise wise-data x11-common 616s xdg-utils xfonts-encodings xfonts-utils xml-core zlib1g-dev 616s 0 upgraded, 259 newly installed, 0 to remove and 0 not upgraded. 616s Need to get 507 MB of archives. 616s After this operation, 2197 MB of additional disk space will be used. 616s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.13-minimal ppc64el 3.13.11-1 [2571 kB] 622s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el m4 ppc64el 1.4.20-2 [236 kB] 622s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el flex ppc64el 2.6.4-8.2build2 [301 kB] 622s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-lato all 2.015-1build1 [2779 kB] 626s Get:5 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgomp1 ppc64el 15.2.0-11ubuntu1 [169 kB] 626s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el libfftw3-double3 ppc64el 3.3.10-2fakesync1build2 [445 kB] 626s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-dejavu-mono all 2.37-8build1 [502 kB] 626s Get:8 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-dejavu-core all 2.37-8build1 [834 kB] 627s Get:9 http://ftpmaster.internal/ubuntu resolute/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build2 [16.1 kB] 627s Get:10 http://ftpmaster.internal/ubuntu resolute/main ppc64el x11-common all 1:7.7+24ubuntu1 [22.4 kB] 627s Get:11 http://ftpmaster.internal/ubuntu resolute/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu3 [576 kB] 628s Get:12 http://ftpmaster.internal/ubuntu resolute/main ppc64el xfonts-utils ppc64el 1:7.7+7build1 [115 kB] 628s Get:13 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-urw-base35 all 20200910-8build1 [10.9 MB] 642s Get:14 http://ftpmaster.internal/ubuntu resolute/main ppc64el fontconfig-config ppc64el 2.15.0-2.4ubuntu1 [38.2 kB] 642s Get:15 http://ftpmaster.internal/ubuntu resolute/main ppc64el libfontconfig1 ppc64el 2.15.0-2.4ubuntu1 [190 kB] 642s Get:16 http://ftpmaster.internal/ubuntu resolute/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1build1 [24.7 kB] 642s Get:17 http://ftpmaster.internal/ubuntu resolute/main ppc64el libaom3 ppc64el 3.13.1-2 [2908 kB] 646s Get:18 http://ftpmaster.internal/ubuntu resolute/main ppc64el libheif-plugin-aomdec ppc64el 1.21.2-1 [14.4 kB] 646s Get:19 http://ftpmaster.internal/ubuntu resolute/main ppc64el libde265-0 ppc64el 1.0.16-1build1 [300 kB] 646s Get:20 http://ftpmaster.internal/ubuntu resolute/main ppc64el libheif-plugin-libde265 ppc64el 1.21.2-1 [10.2 kB] 646s Get:21 http://ftpmaster.internal/ubuntu resolute/main ppc64el libheif1 ppc64el 1.21.2-1 [657 kB] 647s Get:22 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu3 [37.1 kB] 647s Get:23 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-4ubuntu2 [215 kB] 647s Get:24 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 647s Get:25 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblcms2-2 ppc64el 2.17-1 [246 kB] 647s Get:26 http://ftpmaster.internal/ubuntu resolute/universe ppc64el liblqr-1-0 ppc64el 0.4.2-2.2 [45.1 kB] 647s Get:27 http://ftpmaster.internal/ubuntu resolute/main ppc64el libltdl7 ppc64el 2.5.4-9 [51.5 kB] 647s Get:28 http://ftpmaster.internal/ubuntu resolute/main ppc64el libopenjp2-7 ppc64el 2.5.4-1 [251 kB] 647s Get:29 http://ftpmaster.internal/ubuntu resolute/main ppc64el libraw23t64 ppc64el 0.21.4-2 [510 kB] 647s Get:30 http://ftpmaster.internal/ubuntu resolute/main ppc64el libdeflate0 ppc64el 1.23-2 [63.3 kB] 647s Get:31 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu2 [315 kB] 647s Get:32 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebp7 ppc64el 1.5.0-0.1build1 [330 kB] 647s Get:33 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtiff6 ppc64el 4.7.0-3ubuntu3 [307 kB] 647s Get:34 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebpdemux2 ppc64el 1.5.0-0.1build1 [14.8 kB] 647s Get:35 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebpmux3 ppc64el 1.5.0-0.1build1 [31.3 kB] 647s Get:36 http://ftpmaster.internal/ubuntu resolute/universe ppc64el imagemagick-7-common all 8:7.1.2.12+dfsg1-1 [71.8 kB] 647s Get:37 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libmagickcore-7.q16-10 ppc64el 8:7.1.2.12+dfsg1-1 [2532 kB] 650s Get:38 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libmagickwand-7.q16-10 ppc64el 8:7.1.2.12+dfsg1-1 [315 kB] 650s Get:39 http://ftpmaster.internal/ubuntu resolute/main ppc64el poppler-data all 0.4.12-1build1 [2000 kB] 653s Get:40 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy-dev ppc64el 1:2.3.5+ds-3 [153 kB] 653s Get:41 http://ftpmaster.internal/ubuntu resolute/main ppc64el libblas3 ppc64el 3.12.1-7ubuntu1 [291 kB] 653s Get:42 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgfortran5 ppc64el 15.2.0-11ubuntu1 [620 kB] 654s Get:43 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblapack3 ppc64el 3.12.1-7ubuntu1 [2960 kB] 658s Get:44 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy ppc64el 1:2.3.5+ds-3 [5722 kB] 667s Get:45 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.13 ppc64el 3.13.11-1 [758 kB] 671s Get:46 http://ftpmaster.internal/ubuntu resolute/main ppc64el autoconf all 2.72-3.1ubuntu1 [384 kB] 671s Get:47 http://ftpmaster.internal/ubuntu resolute/main ppc64el autotools-dev all 20240727.1 [43.4 kB] 671s Get:48 http://ftpmaster.internal/ubuntu resolute/main ppc64el automake all 1:1.18.1-3build1 [582 kB] 671s Get:49 http://ftpmaster.internal/ubuntu resolute/main ppc64el autopoint all 0.23.2-1 [620 kB] 671s Get:50 http://ftpmaster.internal/ubuntu resolute/main ppc64el libisl23 ppc64el 0.27-1build1 [893 kB] 672s Get:51 http://ftpmaster.internal/ubuntu resolute/main ppc64el libmpc3 ppc64el 1.3.1-2 [62.5 kB] 672s Get:52 http://ftpmaster.internal/ubuntu resolute/main ppc64el cpp-15-powerpc64le-linux-gnu ppc64el 15.2.0-11ubuntu1 [11.4 MB] 687s Get:53 http://ftpmaster.internal/ubuntu resolute/main ppc64el cpp-15 ppc64el 15.2.0-11ubuntu1 [1038 B] 687s Get:54 http://ftpmaster.internal/ubuntu resolute/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:15.2.0-4ubuntu1 [5746 B] 687s Get:55 http://ftpmaster.internal/ubuntu resolute/main ppc64el cpp ppc64el 4:15.2.0-4ubuntu1 [22.4 kB] 687s Get:56 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcc1-0 ppc64el 15.2.0-11ubuntu1 [49.0 kB] 687s Get:57 http://ftpmaster.internal/ubuntu resolute/main ppc64el libitm1 ppc64el 15.2.0-11ubuntu1 [32.2 kB] 687s Get:58 http://ftpmaster.internal/ubuntu resolute/main ppc64el libasan8 ppc64el 15.2.0-11ubuntu1 [3006 kB] 689s Get:59 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblsan0 ppc64el 15.2.0-11ubuntu1 [1374 kB] 690s Get:60 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtsan2 ppc64el 15.2.0-11ubuntu1 [2728 kB] 692s Get:61 http://ftpmaster.internal/ubuntu resolute/main ppc64el libubsan1 ppc64el 15.2.0-11ubuntu1 [1231 kB] 692s Get:62 http://ftpmaster.internal/ubuntu resolute/main ppc64el libquadmath0 ppc64el 15.2.0-11ubuntu1 [160 kB] 692s Get:63 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgcc-15-dev ppc64el 15.2.0-11ubuntu1 [1670 kB] 693s Get:64 http://ftpmaster.internal/ubuntu resolute/main ppc64el gcc-15-powerpc64le-linux-gnu ppc64el 15.2.0-11ubuntu1 [22.4 MB] 709s Get:65 http://ftpmaster.internal/ubuntu resolute/main ppc64el gcc-15 ppc64el 15.2.0-11ubuntu1 [528 kB] 710s Get:66 http://ftpmaster.internal/ubuntu resolute/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:15.2.0-4ubuntu1 [1220 B] 710s Get:67 http://ftpmaster.internal/ubuntu resolute/main ppc64el gcc ppc64el 4:15.2.0-4ubuntu1 [5032 B] 710s Get:68 http://ftpmaster.internal/ubuntu resolute/main ppc64el libstdc++-15-dev ppc64el 15.2.0-11ubuntu1 [2745 kB] 711s Get:69 http://ftpmaster.internal/ubuntu resolute/main ppc64el g++-15-powerpc64le-linux-gnu ppc64el 15.2.0-11ubuntu1 [13.0 MB] 717s Get:70 http://ftpmaster.internal/ubuntu resolute/main ppc64el g++-15 ppc64el 15.2.0-11ubuntu1 [24.6 kB] 717s Get:71 http://ftpmaster.internal/ubuntu resolute/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:15.2.0-4ubuntu1 [970 B] 717s Get:72 http://ftpmaster.internal/ubuntu resolute/main ppc64el g++ ppc64el 4:15.2.0-4ubuntu1 [1092 B] 717s Get:73 http://ftpmaster.internal/ubuntu resolute/main ppc64el build-essential ppc64el 12.12ubuntu2 [5256 B] 717s Get:74 http://ftpmaster.internal/ubuntu resolute/universe ppc64el bwa ppc64el 0.7.19-1 [230 kB] 718s Get:75 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libargtable2-0 ppc64el 13-4 [18.5 kB] 718s Get:76 http://ftpmaster.internal/ubuntu resolute/universe ppc64el clustalo ppc64el 1.2.4-8build2 [255 kB] 718s Get:77 http://ftpmaster.internal/ubuntu resolute/main ppc64el libdebhelper-perl all 13.28ubuntu1 [97.4 kB] 718s Get:78 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtool all 2.5.4-9 [169 kB] 718s Get:79 http://ftpmaster.internal/ubuntu resolute/main ppc64el dh-autoreconf all 21 [12.5 kB] 718s Get:80 http://ftpmaster.internal/ubuntu resolute/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] 718s Get:81 http://ftpmaster.internal/ubuntu resolute/main ppc64el libfile-stripnondeterminism-perl all 1.15.0-1build1 [20.6 kB] 718s Get:82 http://ftpmaster.internal/ubuntu resolute/main ppc64el dh-strip-nondeterminism all 1.15.0-1build1 [5110 B] 718s Get:83 http://ftpmaster.internal/ubuntu resolute/main ppc64el debugedit ppc64el 1:5.2-3 [57.3 kB] 718s Get:84 http://ftpmaster.internal/ubuntu resolute/main ppc64el dwz ppc64el 0.16-2 [142 kB] 718s Get:85 http://ftpmaster.internal/ubuntu resolute/main ppc64el gettext ppc64el 0.23.2-1 [1177 kB] 719s Get:86 http://ftpmaster.internal/ubuntu resolute/main ppc64el intltool-debian all 0.35.0+20060710.6build1 [24.1 kB] 719s Get:87 http://ftpmaster.internal/ubuntu resolute/main ppc64el po-debconf all 1.0.22 [215 kB] 719s Get:88 http://ftpmaster.internal/ubuntu resolute/main ppc64el debhelper all 13.28ubuntu1 [916 kB] 719s Get:89 http://ftpmaster.internal/ubuntu resolute/universe ppc64el dh-python all 7.20251231 [122 kB] 719s Get:90 http://ftpmaster.internal/ubuntu resolute/universe ppc64el dialign ppc64el 2.2.1-13build1 [157 kB] 719s Get:91 http://ftpmaster.internal/ubuntu resolute/main ppc64el sgml-base all 1.31+nmu1 [11.0 kB] 719s Get:92 http://ftpmaster.internal/ubuntu resolute/main ppc64el xml-core all 0.19build1 [20.3 kB] 719s Get:93 http://ftpmaster.internal/ubuntu resolute/main ppc64el docutils-common all 0.22.4+dfsg-1 [130 kB] 719s Get:94 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libcifpp-data all 9.0.5-2 [483 kB] 719s Get:95 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libcifpp9 ppc64el 9.0.5-2 [1203 kB] 720s Get:96 http://ftpmaster.internal/ubuntu resolute/universe ppc64el dssp ppc64el 4.5.7-1 [679 kB] 720s Get:97 http://ftpmaster.internal/ubuntu resolute/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 720s Get:98 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxpm4 ppc64el 1:3.5.17-1build3 [50.5 kB] 720s Get:99 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgd3 ppc64el 2.3.3-13ubuntu1 [165 kB] 720s Get:100 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libhpdf-2.3.0 ppc64el 2.3.0+dfsg-1build4 [462 kB] 720s Get:101 http://ftpmaster.internal/ubuntu resolute/main ppc64el mysql-common all 5.8+1.1.1ubuntu2 [7002 B] 720s Get:102 http://ftpmaster.internal/ubuntu resolute/main ppc64el libmysqlclient24 ppc64el 8.4.7-0ubuntu3 [1304 kB] 721s Get:103 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpq5 ppc64el 18.1-2 [198 kB] 721s Get:104 http://ftpmaster.internal/ubuntu resolute/universe ppc64el emboss-lib ppc64el 6.6.0+dfsg-15ubuntu3 [3514 kB] 722s Get:105 http://ftpmaster.internal/ubuntu resolute/universe ppc64el emboss-data all 6.6.0+dfsg-15ubuntu3 [61.0 MB] 733s Get:106 http://ftpmaster.internal/ubuntu resolute/universe ppc64el emboss ppc64el 6.6.0+dfsg-15ubuntu3 [1052 kB] 734s Get:107 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-dejavu-extra all 2.37-8build1 [1944 kB] 734s Get:108 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 734s Get:109 http://ftpmaster.internal/ubuntu resolute/universe ppc64el fonts-lmodern all 2.005-1build1 [4788 kB] 734s Get:110 http://ftpmaster.internal/ubuntu resolute/universe ppc64el fonts-lyx all 2.5.0~RC2-3 [171 kB] 734s Get:111 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgs-common all 10.05.0dfsg1-0ubuntu4 [176 kB] 734s Get:112 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgs10-common all 10.05.0dfsg1-0ubuntu4 [490 kB] 734s Get:113 http://ftpmaster.internal/ubuntu resolute/main ppc64el libavahi-common-data ppc64el 0.8-17ubuntu1 [31.3 kB] 734s Get:114 http://ftpmaster.internal/ubuntu resolute/main ppc64el libavahi-common3 ppc64el 0.8-17ubuntu1 [26.3 kB] 734s Get:115 http://ftpmaster.internal/ubuntu resolute/main ppc64el libavahi-client3 ppc64el 0.8-17ubuntu1 [31.1 kB] 734s Get:116 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcups2t64 ppc64el 2.4.16-1ubuntu1 [353 kB] 734s Get:117 http://ftpmaster.internal/ubuntu resolute/main ppc64el libidn12 ppc64el 1.43-2 [64.6 kB] 734s Get:118 http://ftpmaster.internal/ubuntu resolute/main ppc64el libijs-0.35 ppc64el 0.35-16 [17.6 kB] 734s Get:119 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjbig2dec0 ppc64el 0.20-1build4 [78.2 kB] 734s Get:120 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpaper2 ppc64el 2.2.5-0.3build1 [18.1 kB] 734s Get:121 http://ftpmaster.internal/ubuntu resolute/main ppc64el libice6 ppc64el 2:1.1.1-1build1 [51.9 kB] 734s Get:122 http://ftpmaster.internal/ubuntu resolute/main ppc64el libsm6 ppc64el 2:1.2.6-1 [18.6 kB] 734s Get:123 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxt6t64 ppc64el 1:1.2.1-1.3 [203 kB] 734s Get:124 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgs10 ppc64el 10.05.0dfsg1-0ubuntu4 [5213 kB] 734s Get:125 http://ftpmaster.internal/ubuntu resolute/main ppc64el ghostscript ppc64el 10.05.0dfsg1-0ubuntu4 [43.0 kB] 734s Get:126 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libnetpbm11t64 ppc64el 2:11.10.02-1build1 [141 kB] 735s Get:127 http://ftpmaster.internal/ubuntu resolute/universe ppc64el netpbm ppc64el 2:11.10.02-1build1 [2594 kB] 735s Get:128 http://ftpmaster.internal/ubuntu resolute/universe ppc64el tex-common all 6.20 [30.0 kB] 735s Get:129 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpaper-utils ppc64el 2.2.5-0.3build1 [15.7 kB] 735s Get:130 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libkpathsea6 ppc64el 2025.20250727.75242+ds-5build1 [74.7 kB] 735s Get:131 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libptexenc1 ppc64el 2025.20250727.75242+ds-5build1 [49.5 kB] 735s Get:132 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libsynctex2 ppc64el 2025.20250727.75242+ds-5build1 [70.5 kB] 735s Get:133 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libtexlua53-5 ppc64el 2025.20250727.75242+ds-5build1 [166 kB] 735s Get:134 http://ftpmaster.internal/ubuntu resolute/main ppc64el t1utils ppc64el 1.41-4build4 [76.9 kB] 735s Get:135 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpixman-1-0 ppc64el 0.46.4-1 [347 kB] 735s Get:136 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-render0 ppc64el 1.17.0-2build1 [17.2 kB] 735s Get:137 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-shm0 ppc64el 1.17.0-2build1 [6078 B] 735s Get:138 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxrender1 ppc64el 1:0.9.12-1 [23.0 kB] 735s Get:139 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcairo2 ppc64el 1.18.4-3 [759 kB] 735s Get:140 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgraphite2-3 ppc64el 1.3.14-11ubuntu1 [85.3 kB] 735s Get:141 http://ftpmaster.internal/ubuntu resolute/main ppc64el libharfbuzz0b ppc64el 12.3.0-4 [674 kB] 735s Get:142 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libmpfi0 ppc64el 1.5.4+ds-4 [38.6 kB] 735s Get:143 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libpotrace0 ppc64el 1.16-2build2 [23.8 kB] 735s Get:144 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libteckit0 ppc64el 2.5.13+ds-1 [407 kB] 735s Get:145 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxmu6 ppc64el 2:1.1.3-4 [56.9 kB] 735s Get:146 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxaw7 ppc64el 2:1.0.16-1build1 [234 kB] 735s Get:147 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxi6 ppc64el 2:1.8.2-2 [37.0 kB] 735s Get:148 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libzzip-0-13t64 ppc64el 0.13.78+dfsg.1-0.2 [33.7 kB] 735s Get:149 http://ftpmaster.internal/ubuntu resolute/universe ppc64el texlive-binaries ppc64el 2025.20250727.75242+ds-5build1 [12.6 MB] 738s Get:150 http://ftpmaster.internal/ubuntu resolute/main ppc64el xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 738s Get:151 http://ftpmaster.internal/ubuntu resolute/universe ppc64el texlive-base all 2025.20251127-1 [22.8 MB] 741s Get:152 http://ftpmaster.internal/ubuntu resolute/main ppc64el hicolor-icon-theme all 0.18-2build1 [13.2 kB] 741s Get:153 http://ftpmaster.internal/ubuntu resolute/universe ppc64el imagemagick-7.q16 ppc64el 8:7.1.2.12+dfsg1-1 [704 kB] 741s Get:154 http://ftpmaster.internal/ubuntu resolute/universe ppc64el imagemagick ppc64el 8:7.1.2.12+dfsg1-1 [14.1 kB] 741s Get:155 http://ftpmaster.internal/ubuntu resolute/universe ppc64el hevea ppc64el 2.36-2build3 [2421 kB] 741s Get:156 http://ftpmaster.internal/ubuntu resolute/main ppc64el libsuitesparseconfig7 ppc64el 1:7.12.1+dfsg-1 [22.1 kB] 741s Get:157 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libamd3 ppc64el 1:7.12.1+dfsg-1 [44.6 kB] 741s Get:158 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libapache-pom-java all 33-2build1 [5976 B] 741s Get:159 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libarpack2t64 ppc64el 3.9.1-6 [107 kB] 741s Get:160 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcolamd3 ppc64el 1:7.12.1+dfsg-1 [31.0 kB] 741s Get:161 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libcommons-parent-java all 56-1build1 [11.1 kB] 741s Get:162 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB] 741s Get:163 http://ftpmaster.internal/ubuntu resolute/main ppc64el libexpat1-dev ppc64el 2.7.3-1 [155 kB] 741s Get:164 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libglpk40 ppc64el 5.0-2 [488 kB] 741s Get:165 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libplfit0 ppc64el 0.9.6+ds-2ubuntu1 [36.4 kB] 741s Get:166 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libigraph4 ppc64el 1.0.1+ds-3 [1683 kB] 742s Get:167 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 742s Get:168 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjson-perl all 4.10000-1 [81.9 kB] 742s Get:169 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libmbedcrypto16 ppc64el 3.6.5-0.1ubuntu2 [329 kB] 742s Get:170 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libmbedx509-7 ppc64el 3.6.5-0.1ubuntu2 [43.7 kB] 742s Get:171 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libmbedtls21 ppc64el 3.6.5-0.1ubuntu2 [144 kB] 742s Get:172 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpython3.14 ppc64el 3.14.2-1 [2731 kB] 742s Get:173 http://ftpmaster.internal/ubuntu resolute/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg+really1.3.1-1ubuntu2 [903 kB] 742s Get:174 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpython3.14-dev ppc64el 3.14.2-1 [6406 kB] 743s Get:175 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libpython3-dev ppc64el 3.14.2-1 [11.2 kB] 743s Get:176 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpython3.13-dev ppc64el 3.13.11-1 [6398 kB] 744s Get:177 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libpython3-all-dev ppc64el 3.14.2-1 [914 B] 744s Get:178 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libqhull-r8.0 ppc64el 2020.2-8 [227 kB] 744s Get:179 http://ftpmaster.internal/ubuntu resolute/main ppc64el libraqm0 ppc64el 0.10.3-1 [19.6 kB] 744s Get:180 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtcl8.6 ppc64el 8.6.17+dfsg-1 [1239 kB] 744s Get:181 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxft2 ppc64el 2.3.6-1build2 [61.6 kB] 744s Get:182 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxss1 ppc64el 1:1.2.3-1build4 [7470 B] 744s Get:183 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtk8.6 ppc64el 8.6.17-1 [968 kB] 745s Get:184 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxslt1.1 ppc64el 1.1.43-0.3 [190 kB] 745s Get:185 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libzopfli1 ppc64el 1.0.3-3 [160 kB] 745s Get:186 http://ftpmaster.internal/ubuntu resolute/universe ppc64el lmodern all 2.005-1build1 [9538 kB] 747s Get:187 http://ftpmaster.internal/ubuntu resolute/universe ppc64el mafft ppc64el 7.525-1 [1081 kB] 747s Get:188 http://ftpmaster.internal/ubuntu resolute/universe ppc64el ncbi-data all 6.1.20170106+dfsg2-7 [3969 kB] 747s Get:189 http://ftpmaster.internal/ubuntu resolute/universe ppc64el ncbi-blast+ ppc64el 2.16.0+ds-7 [16.1 MB] 750s Get:190 http://ftpmaster.internal/ubuntu resolute/universe ppc64el phylip ppc64el 1:3.697+dfsg-4build2 [977 kB] 750s Get:191 http://ftpmaster.internal/ubuntu resolute/universe ppc64el prank ppc64el 250331-1 [399 kB] 750s Get:192 http://ftpmaster.internal/ubuntu resolute/universe ppc64el preview-latex-style all 13.2-1.1 [347 kB] 750s Get:193 http://ftpmaster.internal/ubuntu resolute/universe ppc64el probcons ppc64el 1.12-15 [182 kB] 750s Get:194 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python-biopython-doc all 1.86+dfsg-1 [18.1 MB] 752s Get:195 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 753s Get:196 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-all ppc64el 3.14.2-1 [890 B] 753s Get:197 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.14-dev ppc64el 3.14.2-1 [510 kB] 753s Get:198 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-dev ppc64el 3.14.2-1 [26.6 kB] 753s Get:199 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.13-dev ppc64el 3.13.11-1 [508 kB] 753s Get:200 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-all-dev ppc64el 3.14.2-1 [914 B] 753s Get:201 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-charset-normalizer ppc64el 3.4.4-2 [175 kB] 753s Get:202 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.13-tk ppc64el 3.13.11-1 [108 kB] 753s Get:203 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.14-tk ppc64el 3.14.2-1 [109 kB] 753s Get:204 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-tk ppc64el 3.14.2-1 [11.2 kB] 753s Get:205 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pil.imagetk ppc64el 12.0.0-1ubuntu1 [10.1 kB] 753s Get:206 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-pil ppc64el 12.0.0-1ubuntu1 [645 kB] 754s Get:207 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-cairo ppc64el 1.27.0-2build1 [150 kB] 754s Get:208 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-freetype all 2.5.1-2 [92.2 kB] 754s Get:209 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-rlpycairo all 0.3.0-4 [9332 B] 754s Get:210 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-reportlab all 4.4.9-1 [1149 kB] 754s Get:211 http://ftpmaster.internal/ubuntu resolute/universe ppc64el w3c-sgml-lib all 1.3-3build1 [278 kB] 754s Get:212 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-biopython ppc64el 1.86+dfsg-1 [1726 kB] 754s Get:213 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-biopython-sql all 1.86+dfsg-1 [26.4 kB] 754s Get:214 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-brotli ppc64el 1.1.0-2build6 [430 kB] 754s Get:215 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-contourpy ppc64el 1.3.3-1 [274 kB] 754s Get:216 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-cycler all 0.12.1-2 [9850 B] 754s Get:217 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-decorator all 5.2.1-2 [28.1 kB] 754s Get:218 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-defusedxml all 0.7.1-3build1 [42.4 kB] 754s Get:219 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-roman-numerals all 4.1.0-1 [8660 B] 754s Get:220 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-docutils all 0.22.4+dfsg-1 [439 kB] 754s Get:221 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-lxml ppc64el 6.0.2-1 [2452 kB] 754s Get:222 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-lz4 ppc64el 4.4.5+dfsg-1 [29.0 kB] 754s Get:223 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-scipy ppc64el 1.16.3-3 [20.6 MB] 757s Get:224 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-mpmath all 1.3.0-2 [423 kB] 757s Get:225 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-sympy all 1.14.0-2 [4306 kB] 757s Get:226 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-ufolib2 all 0.18.1+dfsg1-1 [33.7 kB] 757s Get:227 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-zopfli ppc64el 0.4.0-1 [11.3 kB] 757s Get:228 http://ftpmaster.internal/ubuntu resolute/universe ppc64el unicode-data all 16.0.0-1build1 [9543 kB] 759s Get:229 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-fonttools ppc64el 4.61.1-3 [1784 kB] 760s Get:230 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-imagesize all 1.4.1-1build1 [6900 B] 760s Get:231 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-kiwisolver ppc64el 1.4.10~rc0-1 [72.4 kB] 760s Get:232 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-matplotlib ppc64el 3.10.7+dfsg1-1 [17.2 MB] 764s Get:233 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-msgpack ppc64el 1.1.2-1 [116 kB] 764s Get:234 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-mmtf all 1.1.3-1build1 [16.4 kB] 764s Get:235 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-mysqldb ppc64el 1.4.6-2build7 [54.5 kB] 764s Get:236 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-networkx all 3.2.1-4ubuntu2 [11.8 MB] 768s Get:237 http://ftpmaster.internal/ubuntu resolute/main ppc64el sphinx-common all 8.2.3-12 [657 kB] 768s Get:238 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-alabaster all 0.7.16-0.1build1 [18.6 kB] 768s Get:239 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-snowballstemmer all 3.0.1-1 [65.9 kB] 768s Get:240 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-sphinx all 8.2.3-12 [483 kB] 768s Get:241 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-numpydoc all 1.9.0-1 [53.2 kB] 768s Get:242 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-rdflib all 7.1.1-3 [427 kB] 768s Get:243 http://ftpmaster.internal/ubuntu resolute/main ppc64el sphinx-rtd-theme-common all 3.0.2+dfsg-3 [1013 kB] 768s Get:244 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-sphinxcontrib.jquery all 4.1-6 [6856 B] 768s Get:245 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-sphinx-rtd-theme all 3.0.2+dfsg-3 [23.5 kB] 768s Get:246 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-texttable all 1.7.0-1 [11.2 kB] 769s Get:247 http://ftpmaster.internal/ubuntu resolute/universe ppc64el t-coffee ppc64el 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1build1 [1057 kB] 769s Get:248 http://ftpmaster.internal/ubuntu resolute/universe ppc64el texlive-fonts-recommended all 2025.20251127-1 [4972 kB] 770s Get:249 http://ftpmaster.internal/ubuntu resolute/universe ppc64el texlive-luatex all 2025.20251127-1 [36.0 MB] 779s Get:250 http://ftpmaster.internal/ubuntu resolute/universe ppc64el texlive-latex-base all 2025.20251127-1 [1309 kB] 779s Get:251 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libfontbox-java all 1:1.8.16-5 [208 kB] 780s Get:252 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libpdfbox-java all 1:1.8.16-5 [5521 kB] 781s Get:253 http://ftpmaster.internal/ubuntu resolute/universe ppc64el texlive-latex-recommended all 2025.20251127-1 [8494 kB] 782s Get:254 http://ftpmaster.internal/ubuntu resolute/universe ppc64el texlive-pictures all 2025.20251127-1 [23.5 MB] 800s Get:255 http://ftpmaster.internal/ubuntu resolute/universe ppc64el texlive-latex-extra all 2025.20251127-2 [32.5 MB] 830s Get:256 http://ftpmaster.internal/ubuntu resolute/universe ppc64el wise-data all 2.4.1-27 [83.2 kB] 830s Get:257 http://ftpmaster.internal/ubuntu resolute/universe ppc64el wise ppc64el 2.4.1-27 [1066 kB] 831s Get:258 http://ftpmaster.internal/ubuntu resolute/universe ppc64el fasttree ppc64el 2.1.11-2build1 [246 kB] 831s Get:259 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-igraph ppc64el 1.0.0+ds-1 [366 kB] 832s Preconfiguring packages ... 833s Fetched 507 MB in 3min 35s (2354 kB/s) 833s Selecting previously unselected package python3.13-minimal. 833s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121571 files and directories currently installed.) 833s Preparing to unpack .../000-python3.13-minimal_3.13.11-1_ppc64el.deb ... 833s Unpacking python3.13-minimal (3.13.11-1) ... 833s Selecting previously unselected package m4. 833s Preparing to unpack .../001-m4_1.4.20-2_ppc64el.deb ... 833s Unpacking m4 (1.4.20-2) ... 833s Selecting previously unselected package flex. 833s Preparing to unpack .../002-flex_2.6.4-8.2build2_ppc64el.deb ... 833s Unpacking flex (2.6.4-8.2build2) ... 833s Selecting previously unselected package fonts-lato. 833s Preparing to unpack .../003-fonts-lato_2.015-1build1_all.deb ... 833s Unpacking fonts-lato (2.015-1build1) ... 833s Selecting previously unselected package libgomp1:ppc64el. 833s Preparing to unpack .../004-libgomp1_15.2.0-11ubuntu1_ppc64el.deb ... 833s Unpacking libgomp1:ppc64el (15.2.0-11ubuntu1) ... 833s Selecting previously unselected package libfftw3-double3:ppc64el. 833s Preparing to unpack .../005-libfftw3-double3_3.3.10-2fakesync1build2_ppc64el.deb ... 833s Unpacking libfftw3-double3:ppc64el (3.3.10-2fakesync1build2) ... 833s Selecting previously unselected package fonts-dejavu-mono. 833s Preparing to unpack .../006-fonts-dejavu-mono_2.37-8build1_all.deb ... 833s Unpacking fonts-dejavu-mono (2.37-8build1) ... 833s Selecting previously unselected package fonts-dejavu-core. 833s Preparing to unpack .../007-fonts-dejavu-core_2.37-8build1_all.deb ... 833s Unpacking fonts-dejavu-core (2.37-8build1) ... 833s Selecting previously unselected package libfontenc1:ppc64el. 833s Preparing to unpack .../008-libfontenc1_1%3a1.1.8-1build2_ppc64el.deb ... 833s Unpacking libfontenc1:ppc64el (1:1.1.8-1build2) ... 833s Selecting previously unselected package x11-common. 833s Preparing to unpack .../009-x11-common_1%3a7.7+24ubuntu1_all.deb ... 833s Unpacking x11-common (1:7.7+24ubuntu1) ... 833s Selecting previously unselected package xfonts-encodings. 833s Preparing to unpack .../010-xfonts-encodings_1%3a1.0.5-0ubuntu3_all.deb ... 833s Unpacking xfonts-encodings (1:1.0.5-0ubuntu3) ... 833s Selecting previously unselected package xfonts-utils. 833s Preparing to unpack .../011-xfonts-utils_1%3a7.7+7build1_ppc64el.deb ... 833s Unpacking xfonts-utils (1:7.7+7build1) ... 833s Selecting previously unselected package fonts-urw-base35. 833s Preparing to unpack .../012-fonts-urw-base35_20200910-8build1_all.deb ... 833s Unpacking fonts-urw-base35 (20200910-8build1) ... 833s Selecting previously unselected package fontconfig-config. 833s Preparing to unpack .../013-fontconfig-config_2.15.0-2.4ubuntu1_ppc64el.deb ... 834s Unpacking fontconfig-config (2.15.0-2.4ubuntu1) ... 834s Selecting previously unselected package libfontconfig1:ppc64el. 834s Preparing to unpack .../014-libfontconfig1_2.15.0-2.4ubuntu1_ppc64el.deb ... 834s Unpacking libfontconfig1:ppc64el (2.15.0-2.4ubuntu1) ... 834s Selecting previously unselected package libsharpyuv0:ppc64el. 834s Preparing to unpack .../015-libsharpyuv0_1.5.0-0.1build1_ppc64el.deb ... 834s Unpacking libsharpyuv0:ppc64el (1.5.0-0.1build1) ... 834s Selecting previously unselected package libaom3:ppc64el. 834s Preparing to unpack .../016-libaom3_3.13.1-2_ppc64el.deb ... 834s Unpacking libaom3:ppc64el (3.13.1-2) ... 834s Selecting previously unselected package libheif-plugin-aomdec:ppc64el. 834s Preparing to unpack .../017-libheif-plugin-aomdec_1.21.2-1_ppc64el.deb ... 834s Unpacking libheif-plugin-aomdec:ppc64el (1.21.2-1) ... 834s Selecting previously unselected package libde265-0:ppc64el. 834s Preparing to unpack .../018-libde265-0_1.0.16-1build1_ppc64el.deb ... 834s Unpacking libde265-0:ppc64el (1.0.16-1build1) ... 834s Selecting previously unselected package libheif-plugin-libde265:ppc64el. 834s Preparing to unpack .../019-libheif-plugin-libde265_1.21.2-1_ppc64el.deb ... 834s Unpacking libheif-plugin-libde265:ppc64el (1.21.2-1) ... 834s Selecting previously unselected package libheif1:ppc64el. 834s Preparing to unpack .../020-libheif1_1.21.2-1_ppc64el.deb ... 834s Unpacking libheif1:ppc64el (1.21.2-1) ... 834s Selecting previously unselected package libjbig0:ppc64el. 834s Preparing to unpack .../021-libjbig0_2.1-6.1ubuntu3_ppc64el.deb ... 834s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu3) ... 834s Selecting previously unselected package libjpeg-turbo8:ppc64el. 834s Preparing to unpack .../022-libjpeg-turbo8_2.1.5-4ubuntu2_ppc64el.deb ... 834s Unpacking libjpeg-turbo8:ppc64el (2.1.5-4ubuntu2) ... 834s Selecting previously unselected package libjpeg8:ppc64el. 834s Preparing to unpack .../023-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 834s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 834s Selecting previously unselected package liblcms2-2:ppc64el. 834s Preparing to unpack .../024-liblcms2-2_2.17-1_ppc64el.deb ... 834s Unpacking liblcms2-2:ppc64el (2.17-1) ... 834s Selecting previously unselected package liblqr-1-0:ppc64el. 834s Preparing to unpack .../025-liblqr-1-0_0.4.2-2.2_ppc64el.deb ... 834s Unpacking liblqr-1-0:ppc64el (0.4.2-2.2) ... 834s Selecting previously unselected package libltdl7:ppc64el. 834s Preparing to unpack .../026-libltdl7_2.5.4-9_ppc64el.deb ... 834s Unpacking libltdl7:ppc64el (2.5.4-9) ... 834s Selecting previously unselected package libopenjp2-7:ppc64el. 834s Preparing to unpack .../027-libopenjp2-7_2.5.4-1_ppc64el.deb ... 834s Unpacking libopenjp2-7:ppc64el (2.5.4-1) ... 834s Selecting previously unselected package libraw23t64:ppc64el. 834s Preparing to unpack .../028-libraw23t64_0.21.4-2_ppc64el.deb ... 834s Unpacking libraw23t64:ppc64el (0.21.4-2) ... 834s Selecting previously unselected package libdeflate0:ppc64el. 834s Preparing to unpack .../029-libdeflate0_1.23-2_ppc64el.deb ... 834s Unpacking libdeflate0:ppc64el (1.23-2) ... 834s Selecting previously unselected package liblerc4:ppc64el. 834s Preparing to unpack .../030-liblerc4_4.0.0+ds-5ubuntu2_ppc64el.deb ... 834s Unpacking liblerc4:ppc64el (4.0.0+ds-5ubuntu2) ... 834s Selecting previously unselected package libwebp7:ppc64el. 834s Preparing to unpack .../031-libwebp7_1.5.0-0.1build1_ppc64el.deb ... 834s Unpacking libwebp7:ppc64el (1.5.0-0.1build1) ... 834s Selecting previously unselected package libtiff6:ppc64el. 834s Preparing to unpack .../032-libtiff6_4.7.0-3ubuntu3_ppc64el.deb ... 834s Unpacking libtiff6:ppc64el (4.7.0-3ubuntu3) ... 834s Selecting previously unselected package libwebpdemux2:ppc64el. 834s Preparing to unpack .../033-libwebpdemux2_1.5.0-0.1build1_ppc64el.deb ... 834s Unpacking libwebpdemux2:ppc64el (1.5.0-0.1build1) ... 834s Selecting previously unselected package libwebpmux3:ppc64el. 834s Preparing to unpack .../034-libwebpmux3_1.5.0-0.1build1_ppc64el.deb ... 834s Unpacking libwebpmux3:ppc64el (1.5.0-0.1build1) ... 834s Selecting previously unselected package imagemagick-7-common. 834s Preparing to unpack .../035-imagemagick-7-common_8%3a7.1.2.12+dfsg1-1_all.deb ... 834s Unpacking imagemagick-7-common (8:7.1.2.12+dfsg1-1) ... 834s Selecting previously unselected package libmagickcore-7.q16-10:ppc64el. 834s Preparing to unpack .../036-libmagickcore-7.q16-10_8%3a7.1.2.12+dfsg1-1_ppc64el.deb ... 834s Unpacking libmagickcore-7.q16-10:ppc64el (8:7.1.2.12+dfsg1-1) ... 834s Selecting previously unselected package libmagickwand-7.q16-10:ppc64el. 834s Preparing to unpack .../037-libmagickwand-7.q16-10_8%3a7.1.2.12+dfsg1-1_ppc64el.deb ... 834s Unpacking libmagickwand-7.q16-10:ppc64el (8:7.1.2.12+dfsg1-1) ... 834s Selecting previously unselected package poppler-data. 834s Preparing to unpack .../038-poppler-data_0.4.12-1build1_all.deb ... 834s Unpacking poppler-data (0.4.12-1build1) ... 834s Selecting previously unselected package python3-numpy-dev:ppc64el. 834s Preparing to unpack .../039-python3-numpy-dev_1%3a2.3.5+ds-3_ppc64el.deb ... 834s Unpacking python3-numpy-dev:ppc64el (1:2.3.5+ds-3) ... 834s Selecting previously unselected package libblas3:ppc64el. 834s Preparing to unpack .../040-libblas3_3.12.1-7ubuntu1_ppc64el.deb ... 834s Unpacking libblas3:ppc64el (3.12.1-7ubuntu1) ... 834s Selecting previously unselected package libgfortran5:ppc64el. 834s Preparing to unpack .../041-libgfortran5_15.2.0-11ubuntu1_ppc64el.deb ... 834s Unpacking libgfortran5:ppc64el (15.2.0-11ubuntu1) ... 834s Selecting previously unselected package liblapack3:ppc64el. 834s Preparing to unpack .../042-liblapack3_3.12.1-7ubuntu1_ppc64el.deb ... 834s Unpacking liblapack3:ppc64el (3.12.1-7ubuntu1) ... 834s Selecting previously unselected package python3-numpy. 834s Preparing to unpack .../043-python3-numpy_1%3a2.3.5+ds-3_ppc64el.deb ... 834s Unpacking python3-numpy (1:2.3.5+ds-3) ... 835s Selecting previously unselected package python3.13. 835s Preparing to unpack .../044-python3.13_3.13.11-1_ppc64el.deb ... 835s Unpacking python3.13 (3.13.11-1) ... 835s Selecting previously unselected package autoconf. 835s Preparing to unpack .../045-autoconf_2.72-3.1ubuntu1_all.deb ... 835s Unpacking autoconf (2.72-3.1ubuntu1) ... 835s Selecting previously unselected package autotools-dev. 835s Preparing to unpack .../046-autotools-dev_20240727.1_all.deb ... 835s Unpacking autotools-dev (20240727.1) ... 835s Selecting previously unselected package automake. 835s Preparing to unpack .../047-automake_1%3a1.18.1-3build1_all.deb ... 835s Unpacking automake (1:1.18.1-3build1) ... 835s Selecting previously unselected package autopoint. 835s Preparing to unpack .../048-autopoint_0.23.2-1_all.deb ... 835s Unpacking autopoint (0.23.2-1) ... 835s Selecting previously unselected package libisl23:ppc64el. 835s Preparing to unpack .../049-libisl23_0.27-1build1_ppc64el.deb ... 835s Unpacking libisl23:ppc64el (0.27-1build1) ... 835s Selecting previously unselected package libmpc3:ppc64el. 835s Preparing to unpack .../050-libmpc3_1.3.1-2_ppc64el.deb ... 835s Unpacking libmpc3:ppc64el (1.3.1-2) ... 835s Selecting previously unselected package cpp-15-powerpc64le-linux-gnu. 835s Preparing to unpack .../051-cpp-15-powerpc64le-linux-gnu_15.2.0-11ubuntu1_ppc64el.deb ... 835s Unpacking cpp-15-powerpc64le-linux-gnu (15.2.0-11ubuntu1) ... 835s Selecting previously unselected package cpp-15. 835s Preparing to unpack .../052-cpp-15_15.2.0-11ubuntu1_ppc64el.deb ... 835s Unpacking cpp-15 (15.2.0-11ubuntu1) ... 835s Selecting previously unselected package cpp-powerpc64le-linux-gnu. 835s Preparing to unpack .../053-cpp-powerpc64le-linux-gnu_4%3a15.2.0-4ubuntu1_ppc64el.deb ... 835s Unpacking cpp-powerpc64le-linux-gnu (4:15.2.0-4ubuntu1) ... 835s Selecting previously unselected package cpp. 835s Preparing to unpack .../054-cpp_4%3a15.2.0-4ubuntu1_ppc64el.deb ... 835s Unpacking cpp (4:15.2.0-4ubuntu1) ... 835s Selecting previously unselected package libcc1-0:ppc64el. 835s Preparing to unpack .../055-libcc1-0_15.2.0-11ubuntu1_ppc64el.deb ... 835s Unpacking libcc1-0:ppc64el (15.2.0-11ubuntu1) ... 835s Selecting previously unselected package libitm1:ppc64el. 835s Preparing to unpack .../056-libitm1_15.2.0-11ubuntu1_ppc64el.deb ... 835s Unpacking libitm1:ppc64el (15.2.0-11ubuntu1) ... 835s Selecting previously unselected package libasan8:ppc64el. 835s Preparing to unpack .../057-libasan8_15.2.0-11ubuntu1_ppc64el.deb ... 835s Unpacking libasan8:ppc64el (15.2.0-11ubuntu1) ... 835s Selecting previously unselected package liblsan0:ppc64el. 835s Preparing to unpack .../058-liblsan0_15.2.0-11ubuntu1_ppc64el.deb ... 835s Unpacking liblsan0:ppc64el (15.2.0-11ubuntu1) ... 835s Selecting previously unselected package libtsan2:ppc64el. 835s Preparing to unpack .../059-libtsan2_15.2.0-11ubuntu1_ppc64el.deb ... 835s Unpacking libtsan2:ppc64el (15.2.0-11ubuntu1) ... 835s Selecting previously unselected package libubsan1:ppc64el. 835s Preparing to unpack .../060-libubsan1_15.2.0-11ubuntu1_ppc64el.deb ... 835s Unpacking libubsan1:ppc64el (15.2.0-11ubuntu1) ... 835s Selecting previously unselected package libquadmath0:ppc64el. 835s Preparing to unpack .../061-libquadmath0_15.2.0-11ubuntu1_ppc64el.deb ... 835s Unpacking libquadmath0:ppc64el (15.2.0-11ubuntu1) ... 835s Selecting previously unselected package libgcc-15-dev:ppc64el. 835s Preparing to unpack .../062-libgcc-15-dev_15.2.0-11ubuntu1_ppc64el.deb ... 835s Unpacking libgcc-15-dev:ppc64el (15.2.0-11ubuntu1) ... 835s Selecting previously unselected package gcc-15-powerpc64le-linux-gnu. 835s Preparing to unpack .../063-gcc-15-powerpc64le-linux-gnu_15.2.0-11ubuntu1_ppc64el.deb ... 835s Unpacking gcc-15-powerpc64le-linux-gnu (15.2.0-11ubuntu1) ... 836s Selecting previously unselected package gcc-15. 836s Preparing to unpack .../064-gcc-15_15.2.0-11ubuntu1_ppc64el.deb ... 836s Unpacking gcc-15 (15.2.0-11ubuntu1) ... 836s Selecting previously unselected package gcc-powerpc64le-linux-gnu. 836s Preparing to unpack .../065-gcc-powerpc64le-linux-gnu_4%3a15.2.0-4ubuntu1_ppc64el.deb ... 836s Unpacking gcc-powerpc64le-linux-gnu (4:15.2.0-4ubuntu1) ... 836s Selecting previously unselected package gcc. 836s Preparing to unpack .../066-gcc_4%3a15.2.0-4ubuntu1_ppc64el.deb ... 836s Unpacking gcc (4:15.2.0-4ubuntu1) ... 836s Selecting previously unselected package libstdc++-15-dev:ppc64el. 836s Preparing to unpack .../067-libstdc++-15-dev_15.2.0-11ubuntu1_ppc64el.deb ... 836s Unpacking libstdc++-15-dev:ppc64el (15.2.0-11ubuntu1) ... 836s Selecting previously unselected package g++-15-powerpc64le-linux-gnu. 836s Preparing to unpack .../068-g++-15-powerpc64le-linux-gnu_15.2.0-11ubuntu1_ppc64el.deb ... 836s Unpacking g++-15-powerpc64le-linux-gnu (15.2.0-11ubuntu1) ... 836s Selecting previously unselected package g++-15. 836s Preparing to unpack .../069-g++-15_15.2.0-11ubuntu1_ppc64el.deb ... 836s Unpacking g++-15 (15.2.0-11ubuntu1) ... 836s Selecting previously unselected package g++-powerpc64le-linux-gnu. 836s Preparing to unpack .../070-g++-powerpc64le-linux-gnu_4%3a15.2.0-4ubuntu1_ppc64el.deb ... 836s Unpacking g++-powerpc64le-linux-gnu (4:15.2.0-4ubuntu1) ... 836s Selecting previously unselected package g++. 836s Preparing to unpack .../071-g++_4%3a15.2.0-4ubuntu1_ppc64el.deb ... 836s Unpacking g++ (4:15.2.0-4ubuntu1) ... 836s Selecting previously unselected package build-essential. 836s Preparing to unpack .../072-build-essential_12.12ubuntu2_ppc64el.deb ... 836s Unpacking build-essential (12.12ubuntu2) ... 836s Selecting previously unselected package bwa. 836s Preparing to unpack .../073-bwa_0.7.19-1_ppc64el.deb ... 836s Unpacking bwa (0.7.19-1) ... 836s Selecting previously unselected package libargtable2-0:ppc64el. 836s Preparing to unpack .../074-libargtable2-0_13-4_ppc64el.deb ... 836s Unpacking libargtable2-0:ppc64el (13-4) ... 836s Selecting previously unselected package clustalo. 836s Preparing to unpack .../075-clustalo_1.2.4-8build2_ppc64el.deb ... 836s Unpacking clustalo (1.2.4-8build2) ... 836s Selecting previously unselected package libdebhelper-perl. 836s Preparing to unpack .../076-libdebhelper-perl_13.28ubuntu1_all.deb ... 836s Unpacking libdebhelper-perl (13.28ubuntu1) ... 836s Selecting previously unselected package libtool. 836s Preparing to unpack .../077-libtool_2.5.4-9_all.deb ... 836s Unpacking libtool (2.5.4-9) ... 836s Selecting previously unselected package dh-autoreconf. 836s Preparing to unpack .../078-dh-autoreconf_21_all.deb ... 836s Unpacking dh-autoreconf (21) ... 836s Selecting previously unselected package libarchive-zip-perl. 836s Preparing to unpack .../079-libarchive-zip-perl_1.68-1_all.deb ... 836s Unpacking libarchive-zip-perl (1.68-1) ... 836s Selecting previously unselected package libfile-stripnondeterminism-perl. 836s Preparing to unpack .../080-libfile-stripnondeterminism-perl_1.15.0-1build1_all.deb ... 836s Unpacking libfile-stripnondeterminism-perl (1.15.0-1build1) ... 836s Selecting previously unselected package dh-strip-nondeterminism. 836s Preparing to unpack .../081-dh-strip-nondeterminism_1.15.0-1build1_all.deb ... 836s Unpacking dh-strip-nondeterminism (1.15.0-1build1) ... 836s Selecting previously unselected package debugedit. 836s Preparing to unpack .../082-debugedit_1%3a5.2-3_ppc64el.deb ... 836s Unpacking debugedit (1:5.2-3) ... 836s Selecting previously unselected package dwz. 836s Preparing to unpack .../083-dwz_0.16-2_ppc64el.deb ... 836s Unpacking dwz (0.16-2) ... 837s Selecting previously unselected package gettext. 837s Preparing to unpack .../084-gettext_0.23.2-1_ppc64el.deb ... 837s Unpacking gettext (0.23.2-1) ... 837s Selecting previously unselected package intltool-debian. 837s Preparing to unpack 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837s Preparing to unpack .../091-xml-core_0.19build1_all.deb ... 837s Unpacking xml-core (0.19build1) ... 837s Selecting previously unselected package docutils-common. 837s Preparing to unpack .../092-docutils-common_0.22.4+dfsg-1_all.deb ... 837s Unpacking docutils-common (0.22.4+dfsg-1) ... 837s Selecting previously unselected package libcifpp-data. 837s Preparing to unpack .../093-libcifpp-data_9.0.5-2_all.deb ... 837s Unpacking libcifpp-data (9.0.5-2) ... 837s Selecting previously unselected package libcifpp9:ppc64el. 837s Preparing to unpack .../094-libcifpp9_9.0.5-2_ppc64el.deb ... 837s Unpacking libcifpp9:ppc64el (9.0.5-2) ... 837s Selecting previously unselected package dssp. 837s Preparing to unpack .../095-dssp_4.5.7-1_ppc64el.deb ... 837s Unpacking dssp (4.5.7-1) ... 837s Selecting previously unselected package libimagequant0:ppc64el. 837s Preparing to unpack .../096-libimagequant0_2.18.0-1build1_ppc64el.deb ... 837s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 837s Selecting previously unselected package libxpm4:ppc64el. 837s Preparing to unpack .../097-libxpm4_1%3a3.5.17-1build3_ppc64el.deb ... 837s Unpacking libxpm4:ppc64el (1:3.5.17-1build3) ... 837s Selecting previously unselected package libgd3:ppc64el. 837s Preparing to unpack .../098-libgd3_2.3.3-13ubuntu1_ppc64el.deb ... 837s Unpacking libgd3:ppc64el (2.3.3-13ubuntu1) ... 837s Selecting previously unselected package libhpdf-2.3.0:ppc64el. 837s Preparing to unpack .../099-libhpdf-2.3.0_2.3.0+dfsg-1build4_ppc64el.deb ... 837s Unpacking libhpdf-2.3.0:ppc64el (2.3.0+dfsg-1build4) ... 837s Selecting previously unselected package mysql-common. 837s Preparing to unpack .../100-mysql-common_5.8+1.1.1ubuntu2_all.deb ... 837s Unpacking mysql-common (5.8+1.1.1ubuntu2) ... 837s Selecting previously unselected package libmysqlclient24:ppc64el. 837s Preparing to unpack .../101-libmysqlclient24_8.4.7-0ubuntu3_ppc64el.deb ... 837s Unpacking libmysqlclient24:ppc64el (8.4.7-0ubuntu3) ... 837s Selecting previously unselected package libpq5:ppc64el. 837s Preparing to unpack .../102-libpq5_18.1-2_ppc64el.deb ... 837s Unpacking libpq5:ppc64el (18.1-2) ... 837s Selecting previously unselected package emboss-lib. 837s Preparing to unpack .../103-emboss-lib_6.6.0+dfsg-15ubuntu3_ppc64el.deb ... 837s Unpacking emboss-lib (6.6.0+dfsg-15ubuntu3) ... 838s Selecting previously unselected package emboss-data. 838s Preparing to unpack .../104-emboss-data_6.6.0+dfsg-15ubuntu3_all.deb ... 838s Unpacking emboss-data (6.6.0+dfsg-15ubuntu3) ... 841s Selecting previously unselected package emboss. 841s Preparing to unpack .../105-emboss_6.6.0+dfsg-15ubuntu3_ppc64el.deb ... 841s Unpacking emboss (6.6.0+dfsg-15ubuntu3) ... 842s Selecting previously unselected package fonts-dejavu-extra. 842s Preparing to unpack .../106-fonts-dejavu-extra_2.37-8build1_all.deb ... 842s Unpacking fonts-dejavu-extra (2.37-8build1) ... 842s Selecting previously unselected package fonts-font-awesome. 842s Preparing to unpack .../107-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ... 842s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 842s Selecting previously unselected package fonts-lmodern. 842s Preparing to unpack .../108-fonts-lmodern_2.005-1build1_all.deb ... 842s Unpacking fonts-lmodern (2.005-1build1) ... 842s Selecting previously unselected package fonts-lyx. 842s Preparing to unpack .../109-fonts-lyx_2.5.0~RC2-3_all.deb ... 842s Unpacking fonts-lyx (2.5.0~RC2-3) ... 842s Selecting previously unselected package libgs-common. 842s Preparing to unpack .../110-libgs-common_10.05.0dfsg1-0ubuntu4_all.deb ... 842s Unpacking libgs-common (10.05.0dfsg1-0ubuntu4) ... 842s Selecting previously unselected package libgs10-common. 842s Preparing to unpack .../111-libgs10-common_10.05.0dfsg1-0ubuntu4_all.deb ... 842s Unpacking libgs10-common (10.05.0dfsg1-0ubuntu4) ... 842s Selecting previously unselected package libavahi-common-data:ppc64el. 842s Preparing to unpack .../112-libavahi-common-data_0.8-17ubuntu1_ppc64el.deb ... 842s Unpacking libavahi-common-data:ppc64el (0.8-17ubuntu1) ... 842s Selecting previously unselected package libavahi-common3:ppc64el. 842s Preparing to unpack .../113-libavahi-common3_0.8-17ubuntu1_ppc64el.deb ... 842s Unpacking libavahi-common3:ppc64el (0.8-17ubuntu1) ... 842s Selecting previously unselected package libavahi-client3:ppc64el. 842s Preparing to unpack .../114-libavahi-client3_0.8-17ubuntu1_ppc64el.deb ... 842s Unpacking libavahi-client3:ppc64el (0.8-17ubuntu1) ... 842s Selecting previously unselected package libcups2t64:ppc64el. 842s Preparing to unpack .../115-libcups2t64_2.4.16-1ubuntu1_ppc64el.deb ... 842s Unpacking libcups2t64:ppc64el (2.4.16-1ubuntu1) ... 842s Selecting previously unselected package libidn12:ppc64el. 842s Preparing to unpack .../116-libidn12_1.43-2_ppc64el.deb ... 842s Unpacking libidn12:ppc64el (1.43-2) ... 842s Selecting previously unselected package libijs-0.35:ppc64el. 842s Preparing to unpack .../117-libijs-0.35_0.35-16_ppc64el.deb ... 842s Unpacking libijs-0.35:ppc64el (0.35-16) ... 842s Selecting previously unselected package libjbig2dec0:ppc64el. 842s Preparing to unpack .../118-libjbig2dec0_0.20-1build4_ppc64el.deb ... 842s Unpacking libjbig2dec0:ppc64el (0.20-1build4) ... 842s Selecting previously unselected package libpaper2:ppc64el. 842s Preparing to unpack .../119-libpaper2_2.2.5-0.3build1_ppc64el.deb ... 842s Unpacking libpaper2:ppc64el (2.2.5-0.3build1) ... 842s Selecting previously unselected package libice6:ppc64el. 842s Preparing to unpack .../120-libice6_2%3a1.1.1-1build1_ppc64el.deb ... 842s Unpacking libice6:ppc64el (2:1.1.1-1build1) ... 842s Selecting previously unselected package libsm6:ppc64el. 842s Preparing to unpack .../121-libsm6_2%3a1.2.6-1_ppc64el.deb ... 842s Unpacking libsm6:ppc64el (2:1.2.6-1) ... 842s Selecting previously unselected package libxt6t64:ppc64el. 842s Preparing to unpack .../122-libxt6t64_1%3a1.2.1-1.3_ppc64el.deb ... 842s Unpacking libxt6t64:ppc64el (1:1.2.1-1.3) ... 842s Selecting previously unselected package libgs10:ppc64el. 842s Preparing to unpack .../123-libgs10_10.05.0dfsg1-0ubuntu4_ppc64el.deb ... 842s Unpacking libgs10:ppc64el (10.05.0dfsg1-0ubuntu4) ... 842s Selecting previously unselected package ghostscript. 842s Preparing to unpack .../124-ghostscript_10.05.0dfsg1-0ubuntu4_ppc64el.deb ... 842s Unpacking ghostscript (10.05.0dfsg1-0ubuntu4) ... 842s Selecting previously unselected package libnetpbm11t64:ppc64el. 842s Preparing to unpack .../125-libnetpbm11t64_2%3a11.10.02-1build1_ppc64el.deb ... 842s Unpacking libnetpbm11t64:ppc64el (2:11.10.02-1build1) ... 842s Selecting previously unselected package netpbm. 842s Preparing to unpack .../126-netpbm_2%3a11.10.02-1build1_ppc64el.deb ... 842s Unpacking netpbm (2:11.10.02-1build1) ... 843s Selecting previously unselected package tex-common. 843s Preparing to unpack .../127-tex-common_6.20_all.deb ... 843s Unpacking tex-common (6.20) ... 843s Selecting previously unselected package libpaper-utils. 843s Preparing to unpack .../128-libpaper-utils_2.2.5-0.3build1_ppc64el.deb ... 843s Unpacking libpaper-utils (2.2.5-0.3build1) ... 843s Selecting previously unselected package libkpathsea6:ppc64el. 843s Preparing to unpack .../129-libkpathsea6_2025.20250727.75242+ds-5build1_ppc64el.deb ... 843s Unpacking libkpathsea6:ppc64el (2025.20250727.75242+ds-5build1) ... 843s Selecting previously unselected package libptexenc1:ppc64el. 843s Preparing to unpack .../130-libptexenc1_2025.20250727.75242+ds-5build1_ppc64el.deb ... 843s Unpacking libptexenc1:ppc64el (2025.20250727.75242+ds-5build1) ... 843s Selecting previously unselected package libsynctex2:ppc64el. 843s Preparing to unpack .../131-libsynctex2_2025.20250727.75242+ds-5build1_ppc64el.deb ... 843s Unpacking libsynctex2:ppc64el (2025.20250727.75242+ds-5build1) ... 843s Selecting previously unselected package libtexlua53-5:ppc64el. 843s Preparing to unpack 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.../137-libxrender1_1%3a0.9.12-1_ppc64el.deb ... 843s Unpacking libxrender1:ppc64el (1:0.9.12-1) ... 843s Selecting previously unselected package libcairo2:ppc64el. 843s Preparing to unpack .../138-libcairo2_1.18.4-3_ppc64el.deb ... 843s Unpacking libcairo2:ppc64el (1.18.4-3) ... 843s Selecting previously unselected package libgraphite2-3:ppc64el. 843s Preparing to unpack .../139-libgraphite2-3_1.3.14-11ubuntu1_ppc64el.deb ... 843s Unpacking libgraphite2-3:ppc64el (1.3.14-11ubuntu1) ... 843s Selecting previously unselected package libharfbuzz0b:ppc64el. 843s Preparing to unpack .../140-libharfbuzz0b_12.3.0-4_ppc64el.deb ... 843s Unpacking libharfbuzz0b:ppc64el (12.3.0-4) ... 843s Selecting previously unselected package libmpfi0:ppc64el. 843s Preparing to unpack .../141-libmpfi0_1.5.4+ds-4_ppc64el.deb ... 843s Unpacking libmpfi0:ppc64el (1.5.4+ds-4) ... 843s Selecting previously unselected package libpotrace0:ppc64el. 843s Preparing to unpack .../142-libpotrace0_1.16-2build2_ppc64el.deb ... 843s Unpacking libpotrace0:ppc64el (1.16-2build2) ... 843s Selecting previously unselected package libteckit0:ppc64el. 843s Preparing to unpack .../143-libteckit0_2.5.13+ds-1_ppc64el.deb ... 843s Unpacking libteckit0:ppc64el (2.5.13+ds-1) ... 843s Selecting previously unselected package libxmu6:ppc64el. 843s Preparing to unpack .../144-libxmu6_2%3a1.1.3-4_ppc64el.deb ... 843s Unpacking libxmu6:ppc64el (2:1.1.3-4) ... 843s Selecting previously unselected package libxaw7:ppc64el. 843s Preparing to unpack .../145-libxaw7_2%3a1.0.16-1build1_ppc64el.deb ... 843s Unpacking libxaw7:ppc64el (2:1.0.16-1build1) ... 843s Selecting previously unselected package libxi6:ppc64el. 843s Preparing to unpack .../146-libxi6_2%3a1.8.2-2_ppc64el.deb ... 843s Unpacking libxi6:ppc64el (2:1.8.2-2) ... 843s Selecting previously unselected package libzzip-0-13t64:ppc64el. 843s Preparing to unpack .../147-libzzip-0-13t64_0.13.78+dfsg.1-0.2_ppc64el.deb ... 843s Unpacking libzzip-0-13t64:ppc64el (0.13.78+dfsg.1-0.2) ... 843s Selecting previously unselected package texlive-binaries. 843s Preparing to unpack .../148-texlive-binaries_2025.20250727.75242+ds-5build1_ppc64el.deb ... 843s Unpacking texlive-binaries (2025.20250727.75242+ds-5build1) ... 844s Selecting previously unselected package xdg-utils. 844s Preparing to unpack .../149-xdg-utils_1.2.1-2ubuntu2_all.deb ... 844s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 844s Selecting previously unselected package texlive-base. 844s Preparing to unpack .../150-texlive-base_2025.20251127-1_all.deb ... 844s Unpacking texlive-base (2025.20251127-1) ... 845s Selecting previously unselected package hicolor-icon-theme. 845s Preparing to unpack .../151-hicolor-icon-theme_0.18-2build1_all.deb ... 845s Unpacking hicolor-icon-theme (0.18-2build1) ... 845s Selecting previously unselected package imagemagick-7.q16. 845s Preparing to unpack .../152-imagemagick-7.q16_8%3a7.1.2.12+dfsg1-1_ppc64el.deb ... 845s Unpacking imagemagick-7.q16 (8:7.1.2.12+dfsg1-1) ... 845s Selecting previously unselected package imagemagick. 845s Preparing to unpack .../153-imagemagick_8%3a7.1.2.12+dfsg1-1_ppc64el.deb ... 845s Unpacking imagemagick (8:7.1.2.12+dfsg1-1) ... 846s Selecting previously unselected package hevea. 846s Preparing to unpack .../154-hevea_2.36-2build3_ppc64el.deb ... 846s Unpacking hevea (2.36-2build3) ... 846s Selecting previously unselected package libsuitesparseconfig7:ppc64el. 846s Preparing to unpack .../155-libsuitesparseconfig7_1%3a7.12.1+dfsg-1_ppc64el.deb ... 846s Unpacking libsuitesparseconfig7:ppc64el (1:7.12.1+dfsg-1) ... 846s Selecting previously unselected package libamd3:ppc64el. 846s Preparing to unpack .../156-libamd3_1%3a7.12.1+dfsg-1_ppc64el.deb ... 846s Unpacking libamd3:ppc64el (1:7.12.1+dfsg-1) ... 846s Selecting previously unselected package libapache-pom-java. 846s Preparing to unpack .../157-libapache-pom-java_33-2build1_all.deb ... 846s Unpacking libapache-pom-java (33-2build1) ... 846s Selecting previously unselected package libarpack2t64:ppc64el. 846s Preparing to unpack .../158-libarpack2t64_3.9.1-6_ppc64el.deb ... 846s Unpacking libarpack2t64:ppc64el (3.9.1-6) ... 846s Selecting previously unselected package libcolamd3:ppc64el. 846s Preparing to unpack .../159-libcolamd3_1%3a7.12.1+dfsg-1_ppc64el.deb ... 846s Unpacking libcolamd3:ppc64el (1:7.12.1+dfsg-1) ... 846s Selecting previously unselected package libcommons-parent-java. 846s Preparing to unpack .../160-libcommons-parent-java_56-1build1_all.deb ... 846s Unpacking libcommons-parent-java (56-1build1) ... 846s Selecting previously unselected package libcommons-logging-java. 846s Preparing to unpack .../161-libcommons-logging-java_1.3.0-1ubuntu1_all.deb ... 846s Unpacking libcommons-logging-java (1.3.0-1ubuntu1) ... 846s Selecting previously unselected package libexpat1-dev:ppc64el. 846s Preparing to unpack .../162-libexpat1-dev_2.7.3-1_ppc64el.deb ... 846s Unpacking libexpat1-dev:ppc64el (2.7.3-1) ... 846s Selecting previously unselected package libglpk40:ppc64el. 846s Preparing to unpack .../163-libglpk40_5.0-2_ppc64el.deb ... 846s Unpacking libglpk40:ppc64el (5.0-2) ... 846s Selecting previously unselected package libplfit0:ppc64el. 846s Preparing to unpack .../164-libplfit0_0.9.6+ds-2ubuntu1_ppc64el.deb ... 846s Unpacking libplfit0:ppc64el (0.9.6+ds-2ubuntu1) ... 846s Selecting previously unselected package libigraph4:ppc64el. 846s Preparing to unpack .../165-libigraph4_1.0.1+ds-3_ppc64el.deb ... 846s Unpacking libigraph4:ppc64el (1.0.1+ds-3) ... 846s Selecting previously unselected package libjs-jquery. 846s Preparing to unpack .../166-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 846s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 846s Selecting previously unselected package libjson-perl. 846s Preparing to unpack .../167-libjson-perl_4.10000-1_all.deb ... 846s Unpacking libjson-perl (4.10000-1) ... 846s Selecting previously unselected package libmbedcrypto16:ppc64el. 846s Preparing to unpack .../168-libmbedcrypto16_3.6.5-0.1ubuntu2_ppc64el.deb ... 846s Unpacking libmbedcrypto16:ppc64el (3.6.5-0.1ubuntu2) ... 846s Selecting previously unselected package libmbedx509-7:ppc64el. 846s Preparing to unpack .../169-libmbedx509-7_3.6.5-0.1ubuntu2_ppc64el.deb ... 846s Unpacking libmbedx509-7:ppc64el (3.6.5-0.1ubuntu2) ... 846s Selecting previously unselected package libmbedtls21:ppc64el. 846s Preparing to unpack .../170-libmbedtls21_3.6.5-0.1ubuntu2_ppc64el.deb ... 846s Unpacking libmbedtls21:ppc64el (3.6.5-0.1ubuntu2) ... 846s Selecting previously unselected package libpython3.14:ppc64el. 846s Preparing to unpack .../171-libpython3.14_3.14.2-1_ppc64el.deb ... 846s Unpacking libpython3.14:ppc64el (3.14.2-1) ... 846s Selecting previously unselected package zlib1g-dev:ppc64el. 846s Preparing to unpack .../172-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_ppc64el.deb ... 846s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 846s Selecting previously unselected package libpython3.14-dev:ppc64el. 846s Preparing to unpack .../173-libpython3.14-dev_3.14.2-1_ppc64el.deb ... 846s Unpacking libpython3.14-dev:ppc64el (3.14.2-1) ... 846s Selecting previously unselected package libpython3-dev:ppc64el. 846s Preparing to unpack .../174-libpython3-dev_3.14.2-1_ppc64el.deb ... 846s Unpacking libpython3-dev:ppc64el (3.14.2-1) ... 846s Selecting previously unselected package libpython3.13-dev:ppc64el. 846s Preparing to unpack .../175-libpython3.13-dev_3.13.11-1_ppc64el.deb ... 846s Unpacking libpython3.13-dev:ppc64el (3.13.11-1) ... 847s Selecting previously unselected package libpython3-all-dev:ppc64el. 847s Preparing to unpack .../176-libpython3-all-dev_3.14.2-1_ppc64el.deb ... 847s Unpacking libpython3-all-dev:ppc64el (3.14.2-1) ... 847s Selecting previously unselected package libqhull-r8.0:ppc64el. 847s Preparing to unpack .../177-libqhull-r8.0_2020.2-8_ppc64el.deb ... 847s Unpacking libqhull-r8.0:ppc64el (2020.2-8) ... 847s Selecting previously unselected package libraqm0:ppc64el. 847s Preparing to unpack .../178-libraqm0_0.10.3-1_ppc64el.deb ... 847s Unpacking libraqm0:ppc64el (0.10.3-1) ... 847s Selecting previously unselected package libtcl8.6:ppc64el. 847s Preparing to unpack .../179-libtcl8.6_8.6.17+dfsg-1_ppc64el.deb ... 847s Unpacking libtcl8.6:ppc64el (8.6.17+dfsg-1) ... 847s Selecting previously unselected package libxft2:ppc64el. 847s Preparing to unpack .../180-libxft2_2.3.6-1build2_ppc64el.deb ... 847s Unpacking libxft2:ppc64el (2.3.6-1build2) ... 847s Selecting previously unselected package libxss1:ppc64el. 847s Preparing to unpack .../181-libxss1_1%3a1.2.3-1build4_ppc64el.deb ... 847s Unpacking libxss1:ppc64el (1:1.2.3-1build4) ... 847s Selecting previously unselected package libtk8.6:ppc64el. 847s Preparing to unpack .../182-libtk8.6_8.6.17-1_ppc64el.deb ... 847s Unpacking libtk8.6:ppc64el (8.6.17-1) ... 847s Selecting previously unselected package libxslt1.1:ppc64el. 847s Preparing to unpack .../183-libxslt1.1_1.1.43-0.3_ppc64el.deb ... 847s Unpacking libxslt1.1:ppc64el (1.1.43-0.3) ... 847s Selecting previously unselected package libzopfli1. 847s Preparing to unpack .../184-libzopfli1_1.0.3-3_ppc64el.deb ... 847s Unpacking libzopfli1 (1.0.3-3) ... 847s Selecting previously unselected package lmodern. 847s Preparing to unpack .../185-lmodern_2.005-1build1_all.deb ... 847s Unpacking lmodern (2.005-1build1) ... 847s Selecting previously unselected package mafft. 847s Preparing to unpack .../186-mafft_7.525-1_ppc64el.deb ... 847s Unpacking mafft (7.525-1) ... 847s Selecting previously unselected package ncbi-data. 847s Preparing to unpack .../187-ncbi-data_6.1.20170106+dfsg2-7_all.deb ... 847s Unpacking ncbi-data (6.1.20170106+dfsg2-7) ... 847s Selecting previously unselected package ncbi-blast+. 847s Preparing to unpack .../188-ncbi-blast+_2.16.0+ds-7_ppc64el.deb ... 847s Unpacking ncbi-blast+ (2.16.0+ds-7) ... 847s Selecting previously unselected package phylip. 847s Preparing to unpack .../189-phylip_1%3a3.697+dfsg-4build2_ppc64el.deb ... 847s Unpacking phylip (1:3.697+dfsg-4build2) ... 848s Selecting previously unselected package prank. 848s Preparing to unpack .../190-prank_250331-1_ppc64el.deb ... 848s Unpacking prank (250331-1) ... 848s Selecting previously unselected package preview-latex-style. 848s Preparing to unpack .../191-preview-latex-style_13.2-1.1_all.deb ... 848s Unpacking preview-latex-style (13.2-1.1) ... 848s Selecting previously unselected package probcons. 848s Preparing to unpack .../192-probcons_1.12-15_ppc64el.deb ... 848s Unpacking probcons (1.12-15) ... 848s Selecting previously unselected package python-biopython-doc. 848s Preparing to unpack .../193-python-biopython-doc_1.86+dfsg-1_all.deb ... 848s Unpacking python-biopython-doc (1.86+dfsg-1) ... 848s Selecting previously unselected package python-matplotlib-data. 848s Preparing to unpack .../194-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 848s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 848s Selecting previously unselected package python3-all. 848s Preparing to unpack .../195-python3-all_3.14.2-1_ppc64el.deb ... 848s Unpacking python3-all (3.14.2-1) ... 848s Selecting previously unselected package python3.14-dev. 848s Preparing to unpack .../196-python3.14-dev_3.14.2-1_ppc64el.deb ... 848s Unpacking python3.14-dev (3.14.2-1) ... 848s Selecting previously unselected package python3-dev. 848s Preparing to unpack .../197-python3-dev_3.14.2-1_ppc64el.deb ... 848s Unpacking python3-dev (3.14.2-1) ... 848s Selecting previously unselected package python3.13-dev. 848s Preparing to unpack .../198-python3.13-dev_3.13.11-1_ppc64el.deb ... 848s Unpacking python3.13-dev (3.13.11-1) ... 848s Selecting previously unselected package python3-all-dev. 848s Preparing to unpack .../199-python3-all-dev_3.14.2-1_ppc64el.deb ... 848s Unpacking python3-all-dev (3.14.2-1) ... 848s Selecting previously unselected package python3-charset-normalizer. 848s Preparing to unpack .../200-python3-charset-normalizer_3.4.4-2_ppc64el.deb ... 848s Unpacking python3-charset-normalizer (3.4.4-2) ... 848s Selecting previously unselected package python3.13-tk. 848s Preparing to unpack .../201-python3.13-tk_3.13.11-1_ppc64el.deb ... 848s Unpacking python3.13-tk (3.13.11-1) ... 848s Selecting previously unselected package python3.14-tk. 848s Preparing to unpack .../202-python3.14-tk_3.14.2-1_ppc64el.deb ... 848s Unpacking python3.14-tk (3.14.2-1) ... 848s Selecting previously unselected package python3-tk. 848s Preparing to unpack .../203-python3-tk_3.14.2-1_ppc64el.deb ... 848s Unpacking python3-tk (3.14.2-1) ... 848s Selecting previously unselected package python3-pil.imagetk:ppc64el. 848s Preparing to unpack .../204-python3-pil.imagetk_12.0.0-1ubuntu1_ppc64el.deb ... 848s Unpacking python3-pil.imagetk:ppc64el (12.0.0-1ubuntu1) ... 848s Selecting previously unselected package python3-pil:ppc64el. 848s Preparing to unpack .../205-python3-pil_12.0.0-1ubuntu1_ppc64el.deb ... 848s Unpacking python3-pil:ppc64el (12.0.0-1ubuntu1) ... 848s Selecting previously unselected package python3-cairo. 848s Preparing to unpack .../206-python3-cairo_1.27.0-2build1_ppc64el.deb ... 848s Unpacking python3-cairo (1.27.0-2build1) ... 848s Selecting previously unselected package python3-freetype. 848s Preparing to unpack .../207-python3-freetype_2.5.1-2_all.deb ... 848s Unpacking python3-freetype (2.5.1-2) ... 848s Selecting previously unselected package python3-rlpycairo. 848s Preparing to unpack .../208-python3-rlpycairo_0.3.0-4_all.deb ... 848s Unpacking python3-rlpycairo (0.3.0-4) ... 848s Selecting previously unselected package python3-reportlab. 848s Preparing to unpack .../209-python3-reportlab_4.4.9-1_all.deb ... 848s Unpacking python3-reportlab (4.4.9-1) ... 848s Selecting previously unselected package w3c-sgml-lib. 848s Preparing to unpack .../210-w3c-sgml-lib_1.3-3build1_all.deb ... 848s Unpacking w3c-sgml-lib 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package python3-decorator. 849s Preparing to unpack .../216-python3-decorator_5.2.1-2_all.deb ... 849s Unpacking python3-decorator (5.2.1-2) ... 849s Selecting previously unselected package python3-defusedxml. 849s Preparing to unpack .../217-python3-defusedxml_0.7.1-3build1_all.deb ... 849s Unpacking python3-defusedxml (0.7.1-3build1) ... 849s Selecting previously unselected package python3-roman-numerals. 849s Preparing to unpack .../218-python3-roman-numerals_4.1.0-1_all.deb ... 849s Unpacking python3-roman-numerals (4.1.0-1) ... 849s Selecting previously unselected package python3-docutils. 849s Preparing to unpack .../219-python3-docutils_0.22.4+dfsg-1_all.deb ... 849s Unpacking python3-docutils (0.22.4+dfsg-1) ... 849s Selecting previously unselected package python3-lxml:ppc64el. 849s Preparing to unpack .../220-python3-lxml_6.0.2-1_ppc64el.deb ... 849s Unpacking python3-lxml:ppc64el (6.0.2-1) ... 849s Selecting previously unselected package python3-lz4. 849s Preparing to unpack .../221-python3-lz4_4.4.5+dfsg-1_ppc64el.deb ... 849s Unpacking python3-lz4 (4.4.5+dfsg-1) ... 849s Selecting previously unselected package python3-scipy. 849s Preparing to unpack .../222-python3-scipy_1.16.3-3_ppc64el.deb ... 849s Unpacking python3-scipy (1.16.3-3) ... 850s Selecting previously unselected package python3-mpmath. 850s Preparing to unpack .../223-python3-mpmath_1.3.0-2_all.deb ... 850s Unpacking python3-mpmath (1.3.0-2) ... 850s Selecting previously unselected package python3-sympy. 850s Preparing to unpack .../224-python3-sympy_1.14.0-2_all.deb ... 850s Unpacking python3-sympy (1.14.0-2) ... 850s Selecting previously unselected package python3-ufolib2. 850s Preparing to unpack .../225-python3-ufolib2_0.18.1+dfsg1-1_all.deb ... 850s Unpacking python3-ufolib2 (0.18.1+dfsg1-1) ... 850s Selecting previously unselected package python3-zopfli. 850s Preparing to unpack .../226-python3-zopfli_0.4.0-1_ppc64el.deb ... 850s Unpacking python3-zopfli (0.4.0-1) ... 850s Selecting previously unselected package unicode-data. 850s Preparing to unpack .../227-unicode-data_16.0.0-1build1_all.deb ... 850s Unpacking unicode-data (16.0.0-1build1) ... 851s Selecting previously unselected package python3-fonttools. 851s Preparing to unpack .../228-python3-fonttools_4.61.1-3_ppc64el.deb ... 851s Unpacking python3-fonttools (4.61.1-3) ... 851s Selecting previously unselected package python3-imagesize. 851s Preparing to unpack .../229-python3-imagesize_1.4.1-1build1_all.deb ... 851s Unpacking python3-imagesize (1.4.1-1build1) ... 851s Selecting previously unselected package python3-kiwisolver. 851s Preparing to unpack .../230-python3-kiwisolver_1.4.10~rc0-1_ppc64el.deb ... 851s Unpacking python3-kiwisolver (1.4.10~rc0-1) ... 851s Selecting previously unselected package python3-matplotlib. 851s Preparing to unpack .../231-python3-matplotlib_3.10.7+dfsg1-1_ppc64el.deb ... 851s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 851s Selecting previously unselected package python3-msgpack. 851s Preparing to unpack .../232-python3-msgpack_1.1.2-1_ppc64el.deb ... 851s Unpacking python3-msgpack (1.1.2-1) ... 851s Selecting previously unselected package python3-mmtf. 851s Preparing to unpack .../233-python3-mmtf_1.1.3-1build1_all.deb ... 851s Unpacking python3-mmtf (1.1.3-1build1) ... 851s Selecting previously unselected package python3-mysqldb. 851s Preparing to unpack .../234-python3-mysqldb_1.4.6-2build7_ppc64el.deb ... 851s Unpacking python3-mysqldb (1.4.6-2build7) ... 851s Selecting previously unselected package python3-networkx. 851s Preparing to unpack .../235-python3-networkx_3.2.1-4ubuntu2_all.deb ... 851s Unpacking python3-networkx (3.2.1-4ubuntu2) ... 852s Selecting previously unselected package sphinx-common. 852s Preparing to unpack .../236-sphinx-common_8.2.3-12_all.deb ... 852s Unpacking sphinx-common (8.2.3-12) ... 852s Selecting previously unselected package python3-alabaster. 852s Preparing to unpack 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Unpacking sphinx-rtd-theme-common (3.0.2+dfsg-3) ... 852s Selecting previously unselected package python3-sphinxcontrib.jquery. 852s Preparing to unpack .../243-python3-sphinxcontrib.jquery_4.1-6_all.deb ... 852s Unpacking python3-sphinxcontrib.jquery (4.1-6) ... 852s Selecting previously unselected package python3-sphinx-rtd-theme. 852s Preparing to unpack .../244-python3-sphinx-rtd-theme_3.0.2+dfsg-3_all.deb ... 852s Unpacking python3-sphinx-rtd-theme (3.0.2+dfsg-3) ... 852s Selecting previously unselected package python3-texttable. 852s Preparing to unpack .../245-python3-texttable_1.7.0-1_all.deb ... 852s Unpacking python3-texttable (1.7.0-1) ... 852s Selecting previously unselected package t-coffee. 852s Preparing to unpack .../246-t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1build1_ppc64el.deb ... 852s Unpacking t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1build1) ... 852s Selecting previously unselected package texlive-fonts-recommended. 852s Preparing to unpack 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(2.1.11-2build1) ... 859s Selecting previously unselected package python3-igraph. 859s Preparing to unpack .../258-python3-igraph_1.0.0+ds-1_ppc64el.deb ... 859s Unpacking python3-igraph (1.0.0+ds-1) ... 859s Setting up dh-python (7.20251231) ... 859s Setting up libgraphite2-3:ppc64el (1.3.14-11ubuntu1) ... 859s Setting up liblcms2-2:ppc64el (2.17-1) ... 859s Setting up ncbi-data (6.1.20170106+dfsg2-7) ... 859s Setting up libpixman-1-0:ppc64el (0.46.4-1) ... 859s Setting up libsharpyuv0:ppc64el (1.5.0-0.1build1) ... 859s Setting up python3-texttable (1.7.0-1) ... 859s Setting up libaom3:ppc64el (3.13.1-2) ... 859s Setting up mysql-common (5.8+1.1.1ubuntu2) ... 859s update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode 859s Setting up libhpdf-2.3.0:ppc64el (2.3.0+dfsg-1build4) ... 859s Setting up fonts-lato (2.015-1build1) ... 859s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu2) ... 859s Setting up libxpm4:ppc64el (1:3.5.17-1build3) ... 859s Setting up hicolor-icon-theme (0.18-2build1) ... 859s Setting up libxi6:ppc64el (2:1.8.2-2) ... 859s Setting up probcons (1.12-15) ... 859s Setting up libxrender1:ppc64el (1:0.9.12-1) ... 859s Setting up python3-lz4 (4.4.5+dfsg-1) ... 860s Setting up libxcb-render0:ppc64el (1.17.0-2build1) ... 860s Setting up python3-defusedxml (0.7.1-3build1) ... 860s Setting up mafft (7.525-1) ... 860s Setting up libarchive-zip-perl (1.68-1) ... 860s Setting up imagemagick-7-common (8:7.1.2.12+dfsg1-1) ... 860s Setting up python3-charset-normalizer (3.4.4-2) ... 860s Setting up bwa (0.7.19-1) ... 860s Setting up python3-alabaster (0.7.16-0.1build1) ... 860s Setting up fonts-lyx (2.5.0~RC2-3) ... 860s Setting up libijs-0.35:ppc64el (0.35-16) ... 860s Setting up libdebhelper-perl (13.28ubuntu1) ... 860s Setting up libgs-common (10.05.0dfsg1-0ubuntu4) ... 860s Setting up libfontbox-java (1:1.8.16-5) ... 860s Setting up phylip (1:3.697+dfsg-4build2) ... 860s Setting up x11-common (1:7.7+24ubuntu1) ... 861s Setting up libpq5:ppc64el (18.1-2) ... 861s Setting up libdeflate0:ppc64el (1.23-2) ... 861s Setting up m4 (1.4.20-2) ... 861s Setting up libqhull-r8.0:ppc64el (2020.2-8) ... 861s Setting up libxcb-shm0:ppc64el (1.17.0-2build1) ... 861s Setting up libgomp1:ppc64el (15.2.0-11ubuntu1) ... 861s Setting up python3-freetype (2.5.1-2) ... 861s Setting up emboss-data (6.6.0+dfsg-15ubuntu3) ... 861s Setting up python3-networkx (3.2.1-4ubuntu2) ... 864s Setting up libmysqlclient24:ppc64el (8.4.7-0ubuntu3) ... 864s Setting up libjbig0:ppc64el (2.1-6.1ubuntu3) ... 864s Setting up libnetpbm11t64:ppc64el (2:11.10.02-1build1) ... 864s Setting up t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1build1) ... 864s Setting up poppler-data (0.4.12-1build1) ... 864s Setting up unicode-data (16.0.0-1build1) ... 864s Setting up python3-mysqldb (1.4.6-2build7) ... 864s Setting up tex-common (6.20) ... 864s update-language: texlive-base not installed and configured, doing nothing! 864s Setting up 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libquadmath0:ppc64el (15.2.0-11ubuntu1) ... 865s Setting up python3-cycler (0.12.1-2) ... 865s Setting up libtexlua53-5:ppc64el (2025.20250727.75242+ds-5build1) ... 865s Setting up libimagequant0:ppc64el (2.18.0-1build1) ... 865s Setting up fonts-dejavu-mono (2.37-8build1) ... 865s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 865s Setting up libmpc3:ppc64el (1.3.1-2) ... 865s Setting up python3-numpy-dev:ppc64el (1:2.3.5+ds-3) ... 865s Setting up libidn12:ppc64el (1.43-2) ... 865s Setting up libtcl8.6:ppc64el (8.6.17+dfsg-1) ... 865s Setting up autopoint (0.23.2-1) ... 865s Setting up libmpfi0:ppc64el (1.5.4+ds-4) ... 865s Setting up fonts-dejavu-core (2.37-8build1) ... 865s Setting up wise-data (2.4.1-27) ... 865s Setting up libjpeg-turbo8:ppc64el (2.1.5-4ubuntu2) ... 865s Setting up libltdl7:ppc64el (2.5.4-9) ... 865s Setting up libfftw3-double3:ppc64el (3.3.10-2fakesync1build2) ... 865s Setting up libcifpp-data (9.0.5-2) ... 866s Setting up libkpathsea6:ppc64el (2025.20250727.75242+ds-5build1) ... 866s Setting up libgfortran5:ppc64el (15.2.0-11ubuntu1) ... 866s Setting up autoconf (2.72-3.1ubuntu1) ... 866s Setting up libwebp7:ppc64el (1.5.0-0.1build1) ... 866s Setting up libubsan1:ppc64el (15.2.0-11ubuntu1) ... 866s Setting up zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 866s Setting up fonts-dejavu-extra (2.37-8build1) ... 866s Setting up dwz (0.16-2) ... 866s Setting up liblqr-1-0:ppc64el (0.4.2-2.2) ... 866s Setting up python3-rdflib (7.1.1-3) ... 866s Setting up libasan8:ppc64el (15.2.0-11ubuntu1) ... 866s Setting up libjson-perl (4.10000-1) ... 866s Setting up libxslt1.1:ppc64el (1.1.43-0.3) ... 866s Setting up libpython3.14:ppc64el (3.14.2-1) ... 866s Setting up debugedit (1:5.2-3) ... 866s Setting up fonts-lmodern (2.005-1build1) ... 866s Setting up libsuitesparseconfig7:ppc64el (1:7.12.1+dfsg-1) ... 866s Setting up python3-roman-numerals (4.1.0-1) ... 867s Setting up libopenjp2-7:ppc64el (2.5.4-1) ... 867s Setting up python3.13-minimal (3.13.11-1) ... 868s Setting up libharfbuzz0b:ppc64el (12.3.0-4) ... 868s Setting up fasttree (2.1.11-2build1) ... 868s Setting up libpython3.14-dev:ppc64el (3.14.2-1) ... 868s Setting up sgml-base (1.31+nmu1) ... 868s Setting up python3-msgpack (1.1.2-1) ... 868s Setting up libplfit0:ppc64el (0.9.6+ds-2ubuntu1) ... 868s Setting up libxss1:ppc64el (1:1.2.3-1build4) ... 868s Setting up libmbedcrypto16:ppc64el (3.6.5-0.1ubuntu2) ... 868s Setting up libpaper2:ppc64el (2.2.5-0.3build1) ... 868s Setting up libtsan2:ppc64el (15.2.0-11ubuntu1) ... 868s Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 868s Setting up python3-mpmath (1.3.0-2) ... 869s Setting up libisl23:ppc64el (0.27-1build1) ... 869s Setting up libde265-0:ppc64el (1.0.16-1build1) ... 869s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 869s Setting up libwebpmux3:ppc64el (1.5.0-0.1build1) ... 869s Setting up dialign (2.2.1-13build1) ... 869s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 869s Setting up sphinx-rtd-theme-common (3.0.2+dfsg-3) ... 869s Setting up xdg-utils (1.2.1-2ubuntu2) ... 869s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 869s Setting up libcc1-0:ppc64el (15.2.0-11ubuntu1) ... 869s Setting up liblsan0:ppc64el (15.2.0-11ubuntu1) ... 869s Setting up libitm1:ppc64el (15.2.0-11ubuntu1) ... 869s Setting up libsynctex2:ppc64el (2025.20250727.75242+ds-5build1) ... 869s Setting up prank (250331-1) ... 869s Setting up libargtable2-0:ppc64el (13-4) ... 869s Setting up python3-imagesize (1.4.1-1build1) ... 869s Setting up libpotrace0:ppc64el (1.16-2build2) ... 869s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 869s Setting up automake (1:1.18.1-3build1) ... 869s update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode 869s Setting up libfile-stripnondeterminism-perl (1.15.0-1build1) ... 869s Setting up python3-sympy (1.14.0-2) ... 881s /usr/lib/python3/dist-packages/sympy/testing/runtests.py:283: SyntaxWarning: 'return' in a 'finally' block 881s return p.returncode 882s Setting up libice6:ppc64el (2:1.1.1-1build1) ... 882s Setting up flex (2.6.4-8.2build2) ... 882s Setting up liblapack3:ppc64el (3.12.1-7ubuntu1) ... 882s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 882s Setting up gettext (0.23.2-1) ... 882s Setting up libarpack2t64:ppc64el (3.9.1-6) ... 882s Setting up libgcc-15-dev:ppc64el (15.2.0-11ubuntu1) ... 882s Setting up libpython3-dev:ppc64el (3.14.2-1) ... 882s Setting up libamd3:ppc64el (1:7.12.1+dfsg-1) ... 882s Setting up libpdfbox-java (1:1.8.16-5) ... 882s Setting up python3.14-dev (3.14.2-1) ... 882s Setting up libcolamd3:ppc64el (1:7.12.1+dfsg-1) ... 882s Setting up python3.13 (3.13.11-1) ... 883s Setting up libcifpp9:ppc64el (9.0.5-2) ... 883s Setting up fontconfig-config (2.15.0-2.4ubuntu1) ... 883s Setting up wise (2.4.1-27) ... 883s Setting up preview-latex-style (13.2-1.1) ... 883s Setting up libwebpdemux2:ppc64el (1.5.0-0.1build1) ... 883s Setting up libcommons-parent-java (56-1build1) ... 883s Setting up libavahi-common3:ppc64el (0.8-17ubuntu1) ... 883s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ... 883s Setting up python3-all (3.14.2-1) ... 883s Setting up libpaper-utils (2.2.5-0.3build1) ... 883s Setting up clustalo (1.2.4-8build2) ... 883s Setting up dssp (4.5.7-1) ... 883s Setting up xfonts-utils (1:7.7+7build1) ... 883s Setting up python3-zopfli (0.4.0-1) ... 883s Setting up intltool-debian (0.35.0+20060710.6build1) ... 883s Setting up cpp-15-powerpc64le-linux-gnu (15.2.0-11ubuntu1) ... 883s Setting up libmbedx509-7:ppc64el (3.6.5-0.1ubuntu2) ... 883s Setting up libstdc++-15-dev:ppc64el (15.2.0-11ubuntu1) ... 883s Setting up libptexenc1:ppc64el (2025.20250727.75242+ds-5build1) ... 883s Setting up libglpk40:ppc64el (5.0-2) ... 883s Setting up libraqm0:ppc64el (0.10.3-1) ... 883s Setting up libpython3.13-dev:ppc64el (3.13.11-1) ... 883s Setting up sphinx-common (8.2.3-12) ... 883s Setting up python3-dev (3.14.2-1) ... 883s Setting up python3-numpy (1:2.3.5+ds-3) ... 888s Setting up libraw23t64:ppc64el (0.21.4-2) ... 888s Setting up libmbedtls21:ppc64el (3.6.5-0.1ubuntu2) ... 888s Setting up dh-strip-nondeterminism (1.15.0-1build1) ... 888s Setting up cpp-15 (15.2.0-11ubuntu1) ... 888s Setting up python3-lxml:ppc64el (6.0.2-1) ... 888s Setting up python-biopython-doc (1.86+dfsg-1) ... 888s Setting up libtiff6:ppc64el (4.7.0-3ubuntu3) ... 888s Setting up lmodern (2.005-1build1) ... 888s Setting up xml-core (0.19build1) ... 889s Setting up python3-contourpy (1.3.3-1) ... 889s Setting up libfontconfig1:ppc64el (2.15.0-2.4ubuntu1) ... 889s Setting up libsm6:ppc64el (2:1.2.6-1) ... 889s Setting up libavahi-client3:ppc64el (0.8-17ubuntu1) ... 889s Setting up cpp-powerpc64le-linux-gnu (4:15.2.0-4ubuntu1) ... 889s Setting up libxft2:ppc64el (2.3.6-1build2) ... 889s Setting up python3-scipy (1.16.3-3) ... 897s Setting up gcc-15-powerpc64le-linux-gnu (15.2.0-11ubuntu1) ... 897s Setting up python3.13-dev (3.13.11-1) ... 897s Setting up libigraph4:ppc64el (1.0.1+ds-3) ... 897s Setting up po-debconf (1.0.22) ... 897s Setting up libtk8.6:ppc64el (8.6.17-1) ... 897s Setting up python3-mmtf (1.1.3-1build1) ... 897s Setting up fonts-urw-base35 (20200910-8build1) ... 897s Setting up libcairo2:ppc64el (1.18.4-3) ... 897s Setting up python3.13-tk (3.13.11-1) ... 897s Setting up ncbi-blast+ (2.16.0+ds-7) ... 897s Setting up python3-pil:ppc64el (12.0.0-1ubuntu1) ... 898s Setting up gcc-15 (15.2.0-11ubuntu1) ... 899s Setting up gcc-powerpc64le-linux-gnu (4:15.2.0-4ubuntu1) ... 899s Setting up libpython3-all-dev:ppc64el (3.14.2-1) ... 899s Setting up libxt6t64:ppc64el (1:1.2.1-1.3) ... 899s Setting up netpbm (2:11.10.02-1build1) ... 899s Setting up python3-igraph (1.0.0+ds-1) ... 899s Setting up cpp (4:15.2.0-4ubuntu1) ... 899s Setting up libcups2t64:ppc64el (2.4.16-1ubuntu1) ... 899s Setting up python3-all-dev (3.14.2-1) ... 899s Setting up libgs10-common (10.05.0dfsg1-0ubuntu4) ... 899s Setting up g++-15-powerpc64le-linux-gnu (15.2.0-11ubuntu1) ... 899s Setting up libxmu6:ppc64el (2:1.1.3-4) ... 899s Setting up python3.14-tk (3.14.2-1) ... 899s Setting up python3-cairo (1.27.0-2build1) ... 899s Setting up libtool (2.5.4-9) ... 899s Setting up python3-tk (3.14.2-1) ... 899s Setting up libxaw7:ppc64el (2:1.0.16-1build1) ... 899s Setting up gcc (4:15.2.0-4ubuntu1) ... 899s Setting up dh-autoreconf (21) ... 899s Setting up python3-pil.imagetk:ppc64el (12.0.0-1ubuntu1) ... 899s Setting up python3-rlpycairo (0.3.0-4) ... 899s Setting up python3-reportlab (4.4.9-1) ... 901s Setting up texlive-binaries (2025.20250727.75242+ds-5build1) ... 901s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 901s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 901s Setting up texlive-base (2025.20251127-1) ... 902s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 902s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 902s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 902s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 906s Setting up g++-15 (15.2.0-11ubuntu1) ... 906s Setting up g++-powerpc64le-linux-gnu (4:15.2.0-4ubuntu1) ... 906s Setting up libgs10:ppc64el (10.05.0dfsg1-0ubuntu4) ... 906s Setting up texlive-luatex (2025.20251127-1) ... 906s Setting up debhelper (13.28ubuntu1) ... 906s Setting up ghostscript (10.05.0dfsg1-0ubuntu4) ... 906s Setting up texlive-latex-base (2025.20251127-1) ... 906s Setting up texlive-latex-recommended (2025.20251127-1) ... 906s Setting up texlive-pictures (2025.20251127-1) ... 906s Setting up g++ (4:15.2.0-4ubuntu1) ... 906s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 906s Setting up texlive-fonts-recommended (2025.20251127-1) ... 906s Setting up build-essential (12.12ubuntu2) ... 906s Setting up texlive-latex-extra (2025.20251127-2) ... 906s Setting up python3-ufolib2 (0.18.1+dfsg1-1) ... 906s Setting up libheif-plugin-aomdec:ppc64el (1.21.2-1) ... 906s Setting up libheif-plugin-libde265:ppc64el (1.21.2-1) ... 906s Setting up libheif1:ppc64el (1.21.2-1) ... 906s Setting up python3-fonttools (4.61.1-3) ... 906s Setting up libgd3:ppc64el (2.3.3-13ubuntu1) ... 906s Setting up libmagickcore-7.q16-10:ppc64el (8:7.1.2.12+dfsg1-1) ... 906s Setting up emboss-lib (6.6.0+dfsg-15ubuntu3) ... 906s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 908s Setting up libmagickwand-7.q16-10:ppc64el (8:7.1.2.12+dfsg1-1) ... 908s Setting up emboss (6.6.0+dfsg-15ubuntu3) ... 908s Setting up imagemagick-7.q16 (8:7.1.2.12+dfsg1-1) ... 908s update-alternatives: using /usr/bin/compare-im7.q16 to provide /usr/bin/compare (compare) in auto mode 908s update-alternatives: using /usr/bin/compare-im7.q16 to provide /usr/bin/compare-im7 (compare-im7) in auto mode 908s update-alternatives: using /usr/bin/animate-im7.q16 to provide /usr/bin/animate (animate) in auto mode 908s update-alternatives: using /usr/bin/animate-im7.q16 to provide /usr/bin/animate-im7 (animate-im7) in auto mode 908s update-alternatives: using /usr/bin/convert-im7.q16 to provide /usr/bin/convert (convert) in auto mode 908s update-alternatives: using /usr/bin/convert-im7.q16 to provide /usr/bin/convert-im7 (convert-im7) in auto mode 908s update-alternatives: using /usr/bin/composite-im7.q16 to provide /usr/bin/composite (composite) in auto mode 908s update-alternatives: using /usr/bin/composite-im7.q16 to provide /usr/bin/composite-im7 (composite-im7) in auto mode 908s update-alternatives: using /usr/bin/conjure-im7.q16 to provide /usr/bin/conjure (conjure) in auto mode 908s update-alternatives: using /usr/bin/conjure-im7.q16 to provide /usr/bin/conjure-im7 (conjure-im7) in auto mode 908s update-alternatives: using /usr/bin/import-im7.q16 to provide /usr/bin/import (import) in auto mode 908s update-alternatives: using /usr/bin/import-im7.q16 to provide /usr/bin/import-im7 (import-im7) in auto mode 908s update-alternatives: using /usr/bin/identify-im7.q16 to provide /usr/bin/identify (identify) in auto mode 908s update-alternatives: using /usr/bin/identify-im7.q16 to provide /usr/bin/identify-im7 (identify-im7) in auto mode 908s update-alternatives: using /usr/bin/stream-im7.q16 to provide /usr/bin/stream (stream) in auto mode 908s update-alternatives: using /usr/bin/stream-im7.q16 to provide /usr/bin/stream-im7 (stream-im7) in auto mode 908s update-alternatives: using /usr/bin/display-im7.q16 to provide /usr/bin/display (display) in auto mode 908s update-alternatives: using /usr/bin/display-im7.q16 to provide /usr/bin/display-im7 (display-im7) in auto mode 908s update-alternatives: using /usr/bin/montage-im7.q16 to provide /usr/bin/montage (montage) in auto mode 908s update-alternatives: using /usr/bin/montage-im7.q16 to provide /usr/bin/montage-im7 (montage-im7) in auto mode 908s update-alternatives: using /usr/bin/mogrify-im7.q16 to provide /usr/bin/mogrify (mogrify) in auto mode 908s update-alternatives: using /usr/bin/mogrify-im7.q16 to provide /usr/bin/mogrify-im7 (mogrify-im7) in auto mode 908s update-alternatives: using /usr/bin/magick-im7.q16 to provide /usr/bin/magick (magick) in auto mode 908s update-alternatives: warning: skip creation of /usr/share/man/man1/magick.1.gz because associated file /usr/share/man/man1/magick-im7.q16.1.gz (of link group magick) doesn't exist 908s update-alternatives: using /usr/bin/magick-im7.q16 to provide /usr/bin/magick-im7 (magick-im7) in auto mode 908s update-alternatives: warning: skip creation of /usr/share/man/man1/magick-im7.1.gz because associated file /usr/share/man/man1/magick-im7.q16.1.gz (of link group magick-im7) doesn't exist 908s update-alternatives: using /usr/bin/magick-script-im7.q16 to provide /usr/bin/magick-script (magick-script) in auto mode 908s update-alternatives: warning: skip creation of /usr/share/man/man1/magick-script.1.gz because associated file /usr/share/man/man1/magick-script-im7.q16.1.gz (of link group magick-script) doesn't exist 908s update-alternatives: using /usr/bin/magick-script-im7.q16 to provide /usr/bin/magick-script-im7 (magick-script-im7) in auto mode 908s update-alternatives: warning: skip creation of /usr/share/man/man1/magick-script-im7.1.gz because associated file /usr/share/man/man1/magick-script-im7.q16.1.gz (of link group magick-script-im7) doesn't exist 908s Setting up hevea (2.36-2build3) ... 908s Setting up imagemagick (8:7.1.2.12+dfsg1-1) ... 908s Processing triggers for install-info (7.2-5) ... 909s Processing triggers for libc-bin (2.42-2ubuntu4) ... 909s Processing triggers for systemd (259-1ubuntu2) ... 909s Processing triggers for man-db (2.13.1-1) ... 917s Processing triggers for shared-mime-info (2.4-5build2) ... 917s Processing triggers for sgml-base (1.31+nmu1) ... 917s Setting up w3c-sgml-lib (1.3-3build1) ... 941s Setting up docutils-common (0.22.4+dfsg-1) ... 942s Setting up python3-biopython (1.86+dfsg-1) ... 944s Setting up python3-biopython-sql (1.86+dfsg-1) ... 945s Processing triggers for sgml-base (1.31+nmu1) ... 945s Setting up python3-docutils (0.22.4+dfsg-1) ... 946s Setting up python3-sphinx (8.2.3-12) ... 947s Setting up python3-sphinxcontrib.jquery (4.1-6) ... 947s Setting up python3-numpydoc (1.9.0-1) ... 947s Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-3) ... 948s Processing triggers for tex-common (6.20) ... 948s Running updmap-sys. This may take some time... done. 948s Running mktexlsr /var/lib/texmf ... done. 948s Building format(s) --all. 1016s This may take some time... done. 1026s autopkgtest [20:41:52]: test full_suite: sh debian/tests/run-unit-test 1026s autopkgtest [20:41:52]: test full_suite: [----------------------- 1029s mkdir: created directory 'Bio' 1029s mkdir: created directory 'Bio/Align' 1029s mkdir: created directory 'Bio/Align/substitution_matrices' 1029s mkdir: created directory 'Bio/Align/substitution_matrices/data/' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER22' -> 'Bio/Align/substitution_matrices/data/BENNER22' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER6' -> 'Bio/Align/substitution_matrices/data/BENNER6' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BENNER74' -> 'Bio/Align/substitution_matrices/data/BENNER74' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLASTN' -> 'Bio/Align/substitution_matrices/data/BLASTN' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLASTP' -> 'Bio/Align/substitution_matrices/data/BLASTP' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM45' -> 'Bio/Align/substitution_matrices/data/BLOSUM45' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM50' -> 'Bio/Align/substitution_matrices/data/BLOSUM50' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM62' -> 'Bio/Align/substitution_matrices/data/BLOSUM62' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM80' -> 'Bio/Align/substitution_matrices/data/BLOSUM80' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM90' -> 'Bio/Align/substitution_matrices/data/BLOSUM90' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/DAYHOFF' -> 'Bio/Align/substitution_matrices/data/DAYHOFF' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/FENG' -> 'Bio/Align/substitution_matrices/data/FENG' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/GENETIC' -> 'Bio/Align/substitution_matrices/data/GENETIC' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/GONNET1992' -> 'Bio/Align/substitution_matrices/data/GONNET1992' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/HOXD70' -> 'Bio/Align/substitution_matrices/data/HOXD70' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/JOHNSON' -> 'Bio/Align/substitution_matrices/data/JOHNSON' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/JONES' -> 'Bio/Align/substitution_matrices/data/JONES' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/LEVIN' -> 'Bio/Align/substitution_matrices/data/LEVIN' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MCLACHLAN' -> 'Bio/Align/substitution_matrices/data/MCLACHLAN' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MDM78' -> 'Bio/Align/substitution_matrices/data/MDM78' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/MEGABLAST' -> 'Bio/Align/substitution_matrices/data/MEGABLAST' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/NUC.4.4' -> 'Bio/Align/substitution_matrices/data/NUC.4.4' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM250' -> 'Bio/Align/substitution_matrices/data/PAM250' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM30' -> 'Bio/Align/substitution_matrices/data/PAM30' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/PAM70' -> 'Bio/Align/substitution_matrices/data/PAM70' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/RAO' -> 'Bio/Align/substitution_matrices/data/RAO' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/RISLER' -> 'Bio/Align/substitution_matrices/data/RISLER' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/SCHNEIDER' -> 'Bio/Align/substitution_matrices/data/SCHNEIDER' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/STR' -> 'Bio/Align/substitution_matrices/data/STR' 1029s '/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/TRANS' -> 'Bio/Align/substitution_matrices/data/TRANS' 1030s test_Ace ... ok 1030s test_Affy ... ok 1030s test_AlignIO ... ok 1030s test_AlignIO_ClustalIO ... ok 1030s test_AlignIO_EmbossIO ... ok 1030s test_AlignIO_FastaIO ... ok 1030s test_AlignIO_MauveIO ... ok 1030s test_AlignIO_PhylipIO ... ok 1030s test_AlignIO_convert ... ok 1030s test_Align_Alignment ... ok 1031s test_Align_a2m ... ok 1031s test_Align_bed ... ok 1031s test_Align_bigbed ... ok 1032s test_Align_bigmaf ... ok 1032s test_Align_bigpsl ... ok 1032s test_Align_chain ... ok 1032s test_Align_clustal ... ok 1039s test_Align_codonalign ... ok 1039s test_Align_emboss ... ok 1039s test_Align_exonerate ... ok 1039s test_Align_fasta ... ok 1039s test_Align_format_matrix ... ok 1040s test_Align_hhr ... ok 1041s test_Align_maf ... ok 1041s test_Align_mauve ... ok 1041s test_Align_msf ... ok 1041s test_Align_nexus ... ok 1042s test_Align_phylip ... ok 1042s test_Align_psl ... ok 1042s test_Align_sam ... ok 1045s test_Align_stockholm ... ok 1045s test_Align_tabular ... ok 1045s test_BioSQL_MySQLdb_online ... skipping. internet not available 1045s test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample) 1045s test_BioSQL_mysql_connector_online ... skipping. internet not available 1045s test_BioSQL_psycopg2_online ... skipping. internet not available 1051s test_BioSQL_sqlite3 ... ok 1051s test_BioSQL_sqlite3_online ... skipping. internet not available 1051s test_Blast_Record ... ok 1051s test_Blast_parser ... ok 1051s test_CAPS ... ok 1052s test_Chi2 ... ok 1052s test_Cluster ... ok 1052s test_CodonTable ... ok 1052s test_ColorSpiral ... ok 1052s test_Compass ... ok 1053s test_Consensus ... ok 1053s test_EMBL_unittest ... ok 1053s test_EmbossPrimer ... ok 1058s test_Entrez ... ok 1058s test_Entrez_online ... skipping. internet not available 1058s test_Entrez_parser ... ok 1058s test_Enzyme ... ok 1058s test_ExPASy ... skipping. internet not available 1058s test_File ... ok 1058s test_GenBank ... ok 1061s test_GenomeDiagram ... Warn: Can't find .pfb for face 'Helvetica' 1065s ok 1066s test_GraphicsChromosome ... ok 1066s test_GraphicsDistribution ... ok 1067s test_GraphicsGeneral ... ok 1067s test_KEGG ... ok 1067s test_KEGG_online ... skipping. internet not available 1072s test_KGML_graphics ... ok 1072s test_KGML_graphics_online ... skipping. internet not available 1073s test_KGML_nographics ... ok 1073s test_KeyWList ... ok 1074s test_MafIO_index ... ok 1074s test_Medline ... ok 1075s test_NCBIXML ... Exception ignored in: 1075s Traceback (most recent call last): 1075s File "/usr/lib/python3/dist-packages/Bio/Blast/NCBIXML.py", line 1319, in parse 1075s expat_parser.Parse(NULL, True) 1075s xml.parsers.expat.ExpatError: unclosed token: line 320, column 0 1075s ok 1075s test_NCBI_qblast ... ok 1075s test_NMR ... ok 1075s test_Nexus ... ok 1075s test_PAML_baseml ... ok 1076s test_PAML_codeml ... ok 1076s test_PAML_yn00 ... ok 1081s test_PDB_CEAligner ... ok 1082s test_PDB_DSSP ... ok 1082s test_PDB_Dice ... ok 1082s test_PDB_Disordered ... ok 1083s test_PDB_Exposure ... ok 1083s test_PDB_FragmentMapper ... ok 1085s test_PDB_KDTree ... ok 1085s test_PDB_MMCIF2Dict ... ok 1086s test_PDB_MMCIFIO ... ok 1087s test_PDB_MMCIFParser ... ok 1087s test_PDB_NACCESS ... ok 1087s test_PDB_PDBIO ... ok 1087s test_PDB_PDBList ... skipping. internet not available 1094s test_PDB_PDBMLParser ... ok 1095s test_PDB_PDBParser ... ok 1095s test_PDB_PSEA ... skipping. Download and install psea from ftp://ftp.lmcp.jussieu.fr/pub/sincris/software/protein/p-sea/. Make sure that psea is on path 1095s test_PDB_Polypeptide ... ok 1095s test_PDB_QCPSuperimposer ... ok 1099s test_PDB_SASA ... ok 1099s test_PDB_SMCRA ... ok 1099s test_PDB_Selection ... ok 1100s test_PDB_StructureAlignment ... ok 1101s test_PDB_Superimposer ... ok 1101s test_PDB_alphafold_db ... skipping. internet not available 1105s test_PDB_binary_cif ... /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 1, ' ') redefined at line 7. 1105s warnings.warn( 1105s /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 15, ' ') redefined at line 144. 1105s warnings.warn( 1105s /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 15, ' ') redefined at line 153. 1105s warnings.warn( 1105s /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 1, ' ') redefined at line 0. 1105s warnings.warn( 1105s /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 15, ' ') redefined at line 0. 1105s warnings.warn( 1105s ok 1114s test_PDB_internal_coords ... ok 1114s test_PDB_parse_pdb_header ... ok 1115s test_PDB_vectors ... ok 1115s test_PQR ... ok 1115s test_Pathway ... ok 1115s test_Phd ... ok 1116s test_Phylo ... ok 1116s test_PhyloXML ... ok 1116s test_Phylo_CDAO ... ok 1117s test_Phylo_NeXML ... ok 1119s test_Phylo_igraph ... ok 1122s test_Phylo_matplotlib ... ok 1122s test_Phylo_networkx ... ok 1122s test_PopGen_GenePop_nodepend ... ok 1123s test_ProtParam ... ok 1123s test_RCSBFormats ... ok 1124s test_Restriction ... ok 1124s test_SCOP_Astral ... ok 1124s test_SCOP_Cla ... ok 1125s test_SCOP_Des ... ok 1125s test_SCOP_Dom ... ok 1125s test_SCOP_Hie ... ok 1126s test_SCOP_Raf ... ok 1126s test_SCOP_Residues ... ok 1126s test_SCOP_Scop ... ok 1126s test_SVDSuperimposer ... ok 1127s test_SearchIO_blast_tab ... ok 1127s test_SearchIO_blast_tab_index ... ok 1128s test_SearchIO_blast_xml ... ok 1129s test_SearchIO_blast_xml_index ... ok 1129s test_SearchIO_blat_psl ... ok 1130s test_SearchIO_blat_psl_index ... ok 1130s test_SearchIO_exonerate ... ok 1131s test_SearchIO_exonerate_text_index ... ok 1131s test_SearchIO_exonerate_vulgar_index ... ok 1131s test_SearchIO_fasta_m10 ... ok 1132s test_SearchIO_fasta_m10_index ... ok 1132s test_SearchIO_hhsuite2_text ... ok 1132s test_SearchIO_hmmer2_text ... ok 1133s test_SearchIO_hmmer2_text_index ... ok 1133s test_SearchIO_hmmer3_domtab ... ok 1134s test_SearchIO_hmmer3_domtab_index ... ok 1134s test_SearchIO_hmmer3_tab ... ok 1134s test_SearchIO_hmmer3_tab_index ... ok 1135s test_SearchIO_hmmer3_text ... ok 1135s test_SearchIO_hmmer3_text_index ... ok 1135s test_SearchIO_infernal_tab ... ok 1136s test_SearchIO_infernal_tab_index ... ok 1136s test_SearchIO_infernal_text ... ok 1136s test_SearchIO_infernal_text_index ... ok 1137s test_SearchIO_interproscan_xml ... ok 1137s test_SearchIO_model ... ok 1137s test_SearchIO_write ... ok 1138s test_SeqFeature ... ok 1159s test_SeqIO ... ok 1160s test_SeqIO_AbiIO ... ok 1160s test_SeqIO_FastaIO ... ok 1160s test_SeqIO_Gck ... ok 1160s test_SeqIO_Gfa ... ok 1161s test_SeqIO_Insdc ... ok 1161s test_SeqIO_NibIO ... ok 1164s test_SeqIO_PdbIO ... ok 1164s test_SeqIO_QualityIO ... ok 1164s test_SeqIO_SeqXML ... ok 1165s test_SeqIO_SffIO ... ok 1165s test_SeqIO_SnapGene ... ok 1167s test_SeqIO_TwoBitIO ... ok 1167s test_SeqIO_UniprotIO ... ok 1168s test_SeqIO_Xdna ... ok 1168s test_SeqIO_features ... ok 1187s test_SeqIO_index ... ok 1187s test_SeqIO_online ... skipping. internet not available 1188s test_SeqIO_write ... ok 1188s test_SeqRecord ... ok 1188s test_SeqUtils ... ok 1190s test_Seq_objs ... ok 1191s test_SwissProt ... ok 1191s test_TogoWS ... skipping. internet not available 1192s test_TreeConstruction ... ok 1192s test_Tutorial ... skipping. Could not find ../Doc/Tutorial/index.rst file 1192s test_UniGene ... ok 1193s test_UniProt ... skipping. internet not available 1193s test_UniProt_GOA ... ok 1193s test_align ... ok 1194s test_align_substitution_matrices ... ok 1197s test_bgzf ... ok 1197s test_cellosaurus ... ok 1205s test_codonalign ... ok 1205s test_geo ... ok 1206s test_motifs ... ok 1206s test_motifs_online ... skipping. internet not available 1206s test_pairwise2 ... /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. 1206s warnings.warn( 1206s ok 1207s test_pairwise2_no_C ... ok 1207s test_pairwise_aligner ... ok 1208s test_pairwise_alignment_map ... ok 1216s test_phenotype ... ok 1216s test_phenotype_fit ... ok 1217s test_prodoc ... ok 1217s test_prosite ... ok 1217s test_seq ... ok 1218s test_translate ... ok 1218s Skipping any tests requiring internet access 1218s Python version: 3.13.11 (main, Dec 6 2025, 13:15:20) [GCC 15.2.0] 1218s Operating system: posix linux 1218s ---------------------------------------------------------------------- 1218s Ran 201 tests in 188.458 seconds 1218s 1219s :0: ResourceWarning: unclosed file <_io.TextIOWrapper name='Fasta/protein_lib.fa' mode='rt' encoding='UTF-8'> 1219s :0: ResourceWarning: unclosed file <_io.TextIOWrapper name='Fasta/nucleotide_lib.fa' mode='rt' encoding='UTF-8'> 1219s test_Ace ... ok 1219s test_Affy ... ok 1220s test_AlignIO ... ok 1220s test_AlignIO_ClustalIO ... ok 1220s test_AlignIO_EmbossIO ... ok 1220s test_AlignIO_FastaIO ... ok 1220s test_AlignIO_MauveIO ... ok 1220s test_AlignIO_PhylipIO ... ok 1220s test_AlignIO_convert ... ok 1220s test_Align_Alignment ... ok 1220s test_Align_a2m ... ok 1221s test_Align_bed ... ok 1221s test_Align_bigbed ... ok 1222s test_Align_bigmaf ... ok 1222s test_Align_bigpsl ... ok 1222s test_Align_chain ... ok 1222s test_Align_clustal ... ok 1228s test_Align_codonalign ... FAIL 1229s test_Align_emboss ... ok 1229s test_Align_exonerate ... ok 1229s test_Align_fasta ... ok 1229s test_Align_format_matrix ... ok 1229s test_Align_hhr ... ok 1231s test_Align_maf ... ok 1231s test_Align_mauve ... ok 1231s test_Align_msf ... ok 1231s test_Align_nexus ... ok 1231s test_Align_phylip ... ok 1232s test_Align_psl ... ok 1232s test_Align_sam ... ok 1235s test_Align_stockholm ... ok 1235s test_Align_tabular ... ok 1236s test_BioSQL_MySQLdb_online ... skipping. internet not available 1236s test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample) 1236s test_BioSQL_mysql_connector_online ... skipping. internet not available 1236s test_BioSQL_psycopg2_online ... skipping. internet not available 1241s test_BioSQL_sqlite3 ... ok 1241s test_BioSQL_sqlite3_online ... skipping. internet not available 1241s test_Blast_Record ... ok 1242s test_Blast_parser ... ok 1242s test_CAPS ... ok 1242s test_Chi2 ... ERROR 1242s test_Cluster ... ok 1242s test_CodonTable ... ok 1242s test_ColorSpiral ... ok 1242s test_Compass ... ok 1242s test_Consensus ... ERROR 1242s test_EMBL_unittest ... ok 1242s test_EmbossPrimer ... ok 1247s test_Entrez ... ok 1247s test_Entrez_online ... skipping. internet not available 1247s test_Entrez_parser ... ok 1247s test_Enzyme ... ok 1247s test_ExPASy ... skipping. internet not available 1247s test_File ... ok 1248s test_GenBank ... ok 1250s test_GenomeDiagram ... Warn: Can't find .pfb for face 'Helvetica' 1253s ok 1254s test_GraphicsChromosome ... ok 1254s test_GraphicsDistribution ... ok 1255s test_GraphicsGeneral ... ok 1255s test_KEGG ... ok 1255s test_KEGG_online ... skipping. internet not available 1261s test_KGML_graphics ... ok 1261s test_KGML_graphics_online ... skipping. internet not available 1261s test_KGML_nographics ... ok 1261s test_KeyWList ... ok 1263s test_MafIO_index ... ok 1263s test_Medline ... ok 1263s test_NCBIXML ... Exception ignored while closing generator : 1263s Traceback (most recent call last): 1263s File "/usr/lib/python3/dist-packages/Bio/Blast/NCBIXML.py", line 1319, in parse 1263s expat_parser.Parse(NULL, True) 1263s xml.parsers.expat.ExpatError: unclosed token: line 320, column 0 1263s ok 1263s test_NCBI_qblast ... ok 1263s test_NMR ... ok 1264s test_Nexus ... ok 1264s test_PAML_baseml ... ERROR 1264s test_PAML_codeml ... ERROR 1264s test_PAML_yn00 ... ERROR 1268s test_PDB_CEAligner ... ok 1269s test_PDB_DSSP ... ok 1269s test_PDB_Dice ... ok 1270s test_PDB_Disordered ... ok 1270s test_PDB_Exposure ... ok 1270s test_PDB_FragmentMapper ... ok 1273s test_PDB_KDTree ... ok 1273s test_PDB_MMCIF2Dict ... ok 1273s test_PDB_MMCIFIO ... ok 1274s test_PDB_MMCIFParser ... ok 1274s test_PDB_NACCESS ... ok 1275s test_PDB_PDBIO ... ok 1275s test_PDB_PDBList ... skipping. internet not available 1281s test_PDB_PDBMLParser ... ok 1281s test_PDB_PDBParser ... ok 1281s test_PDB_PSEA ... skipping. Download and install psea from ftp://ftp.lmcp.jussieu.fr/pub/sincris/software/protein/p-sea/. Make sure that psea is on path 1281s test_PDB_Polypeptide ... ok 1281s test_PDB_QCPSuperimposer ... ok 1285s test_PDB_SASA ... ok 1286s test_PDB_SMCRA ... ok 1286s test_PDB_Selection ... ok 1287s test_PDB_StructureAlignment ... ok 1287s test_PDB_Superimposer ... ok 1287s test_PDB_alphafold_db ... skipping. internet not available 1291s test_PDB_binary_cif ... /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 1, ' ') redefined at line 7. 1291s warnings.warn( 1291s /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 15, ' ') redefined at line 144. 1291s warnings.warn( 1291s /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 15, ' ') redefined at line 153. 1291s warnings.warn( 1291s /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 1, ' ') redefined at line 0. 1291s warnings.warn( 1291s /usr/lib/python3/dist-packages/Bio/PDB/StructureBuilder.py:137: PDBConstructionWarning: WARNING: Residue (' ', 15, ' ') redefined at line 0. 1291s warnings.warn( 1291s ok 1300s test_PDB_internal_coords ... ok 1301s test_PDB_parse_pdb_header ... ok 1301s test_PDB_vectors ... ok 1301s test_PQR ... ok 1301s test_Pathway ... ok 1301s test_Phd ... ok 1301s test_Phylo ... ERROR 1302s test_PhyloXML ... ERROR 1302s test_Phylo_CDAO ... ERROR 1302s test_Phylo_NeXML ... ERROR 1302s test_Phylo_igraph ... ERROR 1302s test_Phylo_matplotlib ... ERROR 1303s test_Phylo_networkx ... ERROR 1303s test_PopGen_GenePop_nodepend ... ok 1303s test_ProtParam ... ok 1304s test_RCSBFormats ... ok 1304s test_Restriction ... ok 1304s test_SCOP_Astral ... ok 1304s test_SCOP_Cla ... ok 1304s test_SCOP_Des ... ok 1304s test_SCOP_Dom ... ok 1304s test_SCOP_Hie ... ok 1305s test_SCOP_Raf ... ok 1305s test_SCOP_Residues ... ok 1305s test_SCOP_Scop ... ok 1305s test_SVDSuperimposer ... ok 1305s test_SearchIO_blast_tab ... ok 1305s test_SearchIO_blast_tab_index ... ok 1306s test_SearchIO_blast_xml ... ok 1307s test_SearchIO_blast_xml_index ... ok 1307s test_SearchIO_blat_psl ... ok 1308s test_SearchIO_blat_psl_index ... ok 1308s test_SearchIO_exonerate ... ok 1308s test_SearchIO_exonerate_text_index ... ok 1308s test_SearchIO_exonerate_vulgar_index ... ok 1308s test_SearchIO_fasta_m10 ... ok 1309s test_SearchIO_fasta_m10_index ... ok 1309s test_SearchIO_hhsuite2_text ... ok 1309s test_SearchIO_hmmer2_text ... ok 1309s test_SearchIO_hmmer2_text_index ... ok 1310s test_SearchIO_hmmer3_domtab ... ok 1310s test_SearchIO_hmmer3_domtab_index ... ok 1310s test_SearchIO_hmmer3_tab ... ok 1310s test_SearchIO_hmmer3_tab_index ... ok 1310s test_SearchIO_hmmer3_text ... ok 1311s test_SearchIO_hmmer3_text_index ... ok 1311s test_SearchIO_infernal_tab ... ok 1311s test_SearchIO_infernal_tab_index ... ok 1311s test_SearchIO_infernal_text ... ok 1311s test_SearchIO_infernal_text_index ... ok 1311s test_SearchIO_interproscan_xml ... ok 1312s test_SearchIO_model ... ok 1312s test_SearchIO_write ... ok 1312s test_SeqFeature ... ok 1334s test_SeqIO ... ok 1334s test_SeqIO_AbiIO ... ok 1334s test_SeqIO_FastaIO ... ok 1334s test_SeqIO_Gck ... ok 1334s test_SeqIO_Gfa ... ok 1334s test_SeqIO_Insdc ... ok 1334s test_SeqIO_NibIO ... ok 1334s test_SeqIO_PdbIO ... ok 1334s test_SeqIO_QualityIO ... ok 1334s test_SeqIO_SeqXML ... ok 1334s test_SeqIO_SffIO ... ok 1334s test_SeqIO_SnapGene ... ok 1334s test_SeqIO_TwoBitIO ... ok 1335s test_SeqIO_UniprotIO ... ok 1335s test_SeqIO_Xdna ... ok 1336s test_SeqIO_features ... ok 1355s test_SeqIO_index ... ok 1355s test_SeqIO_online ... skipping. internet not available 1356s test_SeqIO_write ... ok 1356s test_SeqRecord ... ok 1356s test_SeqUtils ... ok 1358s test_Seq_objs ... ok 1358s test_SwissProt ... ok 1358s test_TogoWS ... skipping. internet not available 1358s test_TreeConstruction ... ERROR 1359s test_Tutorial ... skipping. Could not find ../Doc/Tutorial/index.rst file 1359s test_UniGene ... ok 1359s test_UniProt ... skipping. internet not available 1359s test_UniProt_GOA ... ok 1359s test_align ... ok 1360s test_align_substitution_matrices ... ok 1363s test_bgzf ... ok 1363s test_cellosaurus ... ok 1368s test_codonalign ... FAIL 1368s test_geo ... ok 1369s test_motifs ... ok 1369s test_motifs_online ... skipping. internet not available 1369s test_pairwise2 ... /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. 1369s warnings.warn( 1369s ok 1370s test_pairwise2_no_C ... ok 1370s test_pairwise_aligner ... ok 1370s test_pairwise_alignment_map ... ok 1379s test_phenotype ... ok 1379s test_phenotype_fit ... ok 1379s test_prodoc ... ok 1379s test_prosite ... ok 1379s test_seq ... ok 1380s test_translate ... ok 1380s ====================================================================== 1380s ERROR: test_dn_ds (test_Align_codonalign.Test_dn_ds.test_dn_ds) 1380s ---------------------------------------------------------------------- 1380s Traceback (most recent call last): 1380s File "/tmp/autopkgtest.qN7bY2/autopkgtest_tmp/Tests/test_Align_codonalign.py", line 8313, in test_dn_ds 1380s dn, ds = calculate_dn_ds_matrix(alignment) 1380s ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ 1380s File "/usr/lib/python3/dist-packages/Bio/Align/analysis.py", line 1012, in calculate_dn_ds_matrix 1380s from Bio.Phylo.TreeConstruction import DistanceMatrix 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/__init__.py", line 14, in 1380s from Bio.Phylo._io import convert 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/_io.py", line 29, in 1380s from Bio.Phylo import CDAOIO 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/CDAOIO.py", line 37, in 1380s import rdflib 1380s File "/usr/lib/python3/dist-packages/rdflib/__init__.py", line 168, in 1380s from rdflib.graph import ConjunctiveGraph, Dataset, Graph 1380s File "/usr/lib/python3/dist-packages/rdflib/graph.py", line 292, in 1380s from rdflib.resource import Resource 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 296, in 1380s class Resource: 1380s ...<164 lines>... 1380s return "Resource(%s,%s)" % (self._graph, self._identifier) 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 379, in Resource 1380s def value(self, p=RDF.value, o=None, default=None, any=True): 1380s ^^^^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 285, in __getattr__ 1380s return cls.__getitem__(name) 1380s ~~~~~~~~~~~~~~~^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 268, in __getitem__ 1380s raise AttributeError(f"term '{name}' not in namespace '{cls._NS}'") 1380s AttributeError: term 'value' not in namespace 'http://www.w3.org/1999/02/22-rdf-syntax-ns#' 1380s 1380s ====================================================================== 1380s ERROR: test_Chi2 1380s ---------------------------------------------------------------------- 1380s Traceback (most recent call last): 1380s File "/tmp/autopkgtest.qN7bY2/autopkgtest_tmp/Tests/run_tests.py", line 245, in runTest 1380s suite = loader.loadTestsFromName(name) 1380s File "/usr/lib/python3.14/unittest/loader.py", line 137, in loadTestsFromName 1380s module = __import__(module_name) 1380s File "/tmp/autopkgtest.qN7bY2/autopkgtest_tmp/Tests/test_Chi2.py", line 10, in 1380s from Bio.Phylo.PAML import chi2 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/__init__.py", line 14, in 1380s from Bio.Phylo._io import convert 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/_io.py", line 29, in 1380s from Bio.Phylo import CDAOIO 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/CDAOIO.py", line 37, in 1380s import rdflib 1380s File "/usr/lib/python3/dist-packages/rdflib/__init__.py", line 168, in 1380s from rdflib.graph import ConjunctiveGraph, Dataset, Graph 1380s File "/usr/lib/python3/dist-packages/rdflib/graph.py", line 292, in 1380s from rdflib.resource import Resource 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 296, in 1380s class Resource: 1380s ...<164 lines>... 1380s return "Resource(%s,%s)" % (self._graph, self._identifier) 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 379, in Resource 1380s def value(self, p=RDF.value, o=None, default=None, any=True): 1380s ^^^^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 285, in __getattr__ 1380s return cls.__getitem__(name) 1380s ~~~~~~~~~~~~~~~^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 268, in __getitem__ 1380s raise AttributeError(f"term '{name}' not in namespace '{cls._NS}'") 1380s AttributeError: term 'value' not in namespace 'http://www.w3.org/1999/02/22-rdf-syntax-ns#' 1380s ====================================================================== 1380s ERROR: test_Consensus 1380s ---------------------------------------------------------------------- 1380s Traceback (most recent call last): 1380s File "/tmp/autopkgtest.qN7bY2/autopkgtest_tmp/Tests/run_tests.py", line 245, in runTest 1380s suite = loader.loadTestsFromName(name) 1380s File "/usr/lib/python3.14/unittest/loader.py", line 137, in loadTestsFromName 1380s module = __import__(module_name) 1380s File "/tmp/autopkgtest.qN7bY2/autopkgtest_tmp/Tests/test_Consensus.py", line 15, in 1380s from Bio import Phylo 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/__init__.py", line 14, in 1380s from Bio.Phylo._io import convert 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/_io.py", line 29, in 1380s from Bio.Phylo import CDAOIO 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/CDAOIO.py", line 37, in 1380s import rdflib 1380s File "/usr/lib/python3/dist-packages/rdflib/__init__.py", line 168, in 1380s from rdflib.graph import ConjunctiveGraph, Dataset, Graph 1380s File "/usr/lib/python3/dist-packages/rdflib/graph.py", line 292, in 1380s from rdflib.resource import Resource 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 296, in 1380s class Resource: 1380s ...<164 lines>... 1380s return "Resource(%s,%s)" % (self._graph, self._identifier) 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 379, in Resource 1380s def value(self, p=RDF.value, o=None, default=None, any=True): 1380s ^^^^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 285, in __getattr__ 1380s return cls.__getitem__(name) 1380s ~~~~~~~~~~~~~~~^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 268, in __getitem__ 1380s raise AttributeError(f"term '{name}' not in namespace '{cls._NS}'") 1380s AttributeError: term 'value' not in namespace 'http://www.w3.org/1999/02/22-rdf-syntax-ns#' 1380s ====================================================================== 1380s ERROR: test_PAML_baseml 1380s ---------------------------------------------------------------------- 1380s Traceback (most recent call last): 1380s File "/tmp/autopkgtest.qN7bY2/autopkgtest_tmp/Tests/run_tests.py", line 245, in runTest 1380s suite = loader.loadTestsFromName(name) 1380s File "/usr/lib/python3.14/unittest/loader.py", line 137, in loadTestsFromName 1380s module = __import__(module_name) 1380s File "/tmp/autopkgtest.qN7bY2/autopkgtest_tmp/Tests/test_PAML_baseml.py", line 12, in 1380s from Bio.Phylo.PAML import baseml 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/__init__.py", line 14, in 1380s from Bio.Phylo._io import convert 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/_io.py", line 29, in 1380s from Bio.Phylo import CDAOIO 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/CDAOIO.py", line 37, in 1380s import rdflib 1380s File "/usr/lib/python3/dist-packages/rdflib/__init__.py", line 168, in 1380s from rdflib.graph import ConjunctiveGraph, Dataset, Graph 1380s File "/usr/lib/python3/dist-packages/rdflib/graph.py", line 292, in 1380s from rdflib.resource import Resource 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 296, in 1380s class Resource: 1380s ...<164 lines>... 1380s return "Resource(%s,%s)" % (self._graph, self._identifier) 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 379, in Resource 1380s def value(self, p=RDF.value, o=None, default=None, any=True): 1380s ^^^^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 285, in __getattr__ 1380s return cls.__getitem__(name) 1380s ~~~~~~~~~~~~~~~^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 268, in __getitem__ 1380s raise AttributeError(f"term '{name}' not in namespace '{cls._NS}'") 1380s AttributeError: term 'value' not in namespace 'http://www.w3.org/1999/02/22-rdf-syntax-ns#' 1380s ====================================================================== 1380s ERROR: test_PAML_codeml 1380s ---------------------------------------------------------------------- 1380s Traceback (most recent call last): 1380s File "/tmp/autopkgtest.qN7bY2/autopkgtest_tmp/Tests/run_tests.py", line 245, in runTest 1380s suite = loader.loadTestsFromName(name) 1380s File "/usr/lib/python3.14/unittest/loader.py", line 137, in loadTestsFromName 1380s module = __import__(module_name) 1380s File "/tmp/autopkgtest.qN7bY2/autopkgtest_tmp/Tests/test_PAML_codeml.py", line 13, in 1380s from Bio.Phylo.PAML import codeml 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/__init__.py", line 14, in 1380s from Bio.Phylo._io import convert 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/_io.py", line 29, in 1380s from Bio.Phylo import CDAOIO 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/CDAOIO.py", line 37, in 1380s import rdflib 1380s File "/usr/lib/python3/dist-packages/rdflib/__init__.py", line 168, in 1380s from rdflib.graph import ConjunctiveGraph, Dataset, Graph 1380s File "/usr/lib/python3/dist-packages/rdflib/graph.py", line 292, in 1380s from rdflib.resource import Resource 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 296, in 1380s class Resource: 1380s ...<164 lines>... 1380s return "Resource(%s,%s)" % (self._graph, self._identifier) 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 379, in Resource 1380s def value(self, p=RDF.value, o=None, default=None, any=True): 1380s ^^^^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 285, in __getattr__ 1380s return cls.__getitem__(name) 1380s ~~~~~~~~~~~~~~~^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 268, in __getitem__ 1380s raise AttributeError(f"term '{name}' not in namespace '{cls._NS}'") 1380s AttributeError: term 'value' not in namespace 'http://www.w3.org/1999/02/22-rdf-syntax-ns#' 1380s ====================================================================== 1380s ERROR: test_PAML_yn00 1380s ---------------------------------------------------------------------- 1380s Traceback (most recent call last): 1380s File "/tmp/autopkgtest.qN7bY2/autopkgtest_tmp/Tests/run_tests.py", line 245, in runTest 1380s suite = loader.loadTestsFromName(name) 1380s File "/usr/lib/python3.14/unittest/loader.py", line 137, in loadTestsFromName 1380s module = __import__(module_name) 1380s File "/tmp/autopkgtest.qN7bY2/autopkgtest_tmp/Tests/test_PAML_yn00.py", line 13, in 1380s from Bio.Phylo.PAML import yn00 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/__init__.py", line 14, in 1380s from Bio.Phylo._io import convert 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/_io.py", line 29, in 1380s from Bio.Phylo import CDAOIO 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/CDAOIO.py", line 37, in 1380s import rdflib 1380s File "/usr/lib/python3/dist-packages/rdflib/__init__.py", line 168, in 1380s from rdflib.graph import ConjunctiveGraph, Dataset, Graph 1380s File "/usr/lib/python3/dist-packages/rdflib/graph.py", line 292, in 1380s from rdflib.resource import Resource 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 296, in 1380s class Resource: 1380s ...<164 lines>... 1380s return "Resource(%s,%s)" % (self._graph, self._identifier) 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 379, in Resource 1380s def value(self, p=RDF.value, o=None, default=None, any=True): 1380s ^^^^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 285, in __getattr__ 1380s return cls.__getitem__(name) 1380s ~~~~~~~~~~~~~~~^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 268, in __getitem__ 1380s raise AttributeError(f"term '{name}' not in namespace '{cls._NS}'") 1380s AttributeError: term 'value' not in namespace 'http://www.w3.org/1999/02/22-rdf-syntax-ns#' 1380s ====================================================================== 1380s ERROR: test_Phylo 1380s ---------------------------------------------------------------------- 1380s Traceback (most recent call last): 1380s File "/tmp/autopkgtest.qN7bY2/autopkgtest_tmp/Tests/run_tests.py", line 245, in runTest 1380s suite = loader.loadTestsFromName(name) 1380s File "/usr/lib/python3.14/unittest/loader.py", line 137, in loadTestsFromName 1380s module = __import__(module_name) 1380s File "/tmp/autopkgtest.qN7bY2/autopkgtest_tmp/Tests/test_Phylo.py", line 13, in 1380s from Bio import Phylo 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/__init__.py", line 14, in 1380s from Bio.Phylo._io import convert 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/_io.py", line 29, in 1380s from Bio.Phylo import CDAOIO 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/CDAOIO.py", line 37, in 1380s import rdflib 1380s File "/usr/lib/python3/dist-packages/rdflib/__init__.py", line 168, in 1380s from rdflib.graph import ConjunctiveGraph, Dataset, Graph 1380s File "/usr/lib/python3/dist-packages/rdflib/graph.py", line 292, in 1380s from rdflib.resource import Resource 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 296, in 1380s class Resource: 1380s ...<164 lines>... 1380s return "Resource(%s,%s)" % (self._graph, self._identifier) 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 379, in Resource 1380s def value(self, p=RDF.value, o=None, default=None, any=True): 1380s ^^^^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 285, in __getattr__ 1380s return cls.__getitem__(name) 1380s ~~~~~~~~~~~~~~~^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 268, in __getitem__ 1380s raise AttributeError(f"term '{name}' not in namespace '{cls._NS}'") 1380s AttributeError: term 'value' not in namespace 'http://www.w3.org/1999/02/22-rdf-syntax-ns#' 1380s ====================================================================== 1380s ERROR: test_PhyloXML 1380s ---------------------------------------------------------------------- 1380s Traceback (most recent call last): 1380s File "/tmp/autopkgtest.qN7bY2/autopkgtest_tmp/Tests/run_tests.py", line 245, in runTest 1380s suite = loader.loadTestsFromName(name) 1380s File "/usr/lib/python3.14/unittest/loader.py", line 137, in loadTestsFromName 1380s module = __import__(module_name) 1380s File "/tmp/autopkgtest.qN7bY2/autopkgtest_tmp/Tests/test_PhyloXML.py", line 17, in 1380s from Bio.Phylo import PhyloXML as PX 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/__init__.py", line 14, in 1380s from Bio.Phylo._io import convert 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/_io.py", line 29, in 1380s from Bio.Phylo import CDAOIO 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/CDAOIO.py", line 37, in 1380s import rdflib 1380s File "/usr/lib/python3/dist-packages/rdflib/__init__.py", line 168, in 1380s from rdflib.graph import ConjunctiveGraph, Dataset, Graph 1380s File "/usr/lib/python3/dist-packages/rdflib/graph.py", line 292, in 1380s from rdflib.resource import Resource 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 296, in 1380s class Resource: 1380s ...<164 lines>... 1380s return "Resource(%s,%s)" % (self._graph, self._identifier) 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 379, in Resource 1380s def value(self, p=RDF.value, o=None, default=None, any=True): 1380s ^^^^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 285, in __getattr__ 1380s return cls.__getitem__(name) 1380s ~~~~~~~~~~~~~~~^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 268, in __getitem__ 1380s raise AttributeError(f"term '{name}' not in namespace '{cls._NS}'") 1380s AttributeError: term 'value' not in namespace 'http://www.w3.org/1999/02/22-rdf-syntax-ns#' 1380s ====================================================================== 1380s ERROR: test_Phylo_CDAO 1380s ---------------------------------------------------------------------- 1380s Traceback (most recent call last): 1380s File "/tmp/autopkgtest.qN7bY2/autopkgtest_tmp/Tests/run_tests.py", line 245, in runTest 1380s suite = loader.loadTestsFromName(name) 1380s File "/usr/lib/python3.14/unittest/loader.py", line 137, in loadTestsFromName 1380s module = __import__(module_name) 1380s File "/tmp/autopkgtest.qN7bY2/autopkgtest_tmp/Tests/test_Phylo_CDAO.py", line 13, in 1380s import Bio.Phylo as bp 1380s File "/usr/lib/python3/dist-Skipping any tests requiring internet access 1380s Python version: 3.14.2 (main, Dec 6 2025, 13:20:08) [GCC 15.2.0] 1380s Operating system: posix linux 1380s packages/Bio/Phylo/__init__.py", line 14, in 1380s from Bio.Phylo._io import convert 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/_io.py", line 29, in 1380s from Bio.Phylo import CDAOIO 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/CDAOIO.py", line 37, in 1380s import rdflib 1380s File "/usr/lib/python3/dist-packages/rdflib/__init__.py", line 168, in 1380s from rdflib.graph import ConjunctiveGraph, Dataset, Graph 1380s File "/usr/lib/python3/dist-packages/rdflib/graph.py", line 292, in 1380s from rdflib.resource import Resource 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 296, in 1380s class Resource: 1380s ...<164 lines>... 1380s return "Resource(%s,%s)" % (self._graph, self._identifier) 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 379, in Resource 1380s def value(self, p=RDF.value, o=None, default=None, any=True): 1380s ^^^^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 285, in __getattr__ 1380s return cls.__getitem__(name) 1380s ~~~~~~~~~~~~~~~^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 268, in __getitem__ 1380s raise AttributeError(f"term '{name}' not in namespace '{cls._NS}'") 1380s AttributeError: term 'value' not in namespace 'http://www.w3.org/1999/02/22-rdf-syntax-ns#' 1380s ====================================================================== 1380s ERROR: test_Phylo_NeXML 1380s ---------------------------------------------------------------------- 1380s Traceback (most recent call last): 1380s File "/tmp/autopkgtest.qN7bY2/autopkgtest_tmp/Tests/run_tests.py", line 245, in runTest 1380s suite = loader.loadTestsFromName(name) 1380s File "/usr/lib/python3.14/unittest/loader.py", line 137, in loadTestsFromName 1380s module = __import__(module_name) 1380s File "/tmp/autopkgtest.qN7bY2/autopkgtest_tmp/Tests/test_Phylo_NeXML.py", line 14, in 1380s from Bio import Phylo 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/__init__.py", line 14, in 1380s from Bio.Phylo._io import convert 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/_io.py", line 29, in 1380s from Bio.Phylo import CDAOIO 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/CDAOIO.py", line 37, in 1380s import rdflib 1380s File "/usr/lib/python3/dist-packages/rdflib/__init__.py", line 168, in 1380s from rdflib.graph import ConjunctiveGraph, Dataset, Graph 1380s File "/usr/lib/python3/dist-packages/rdflib/graph.py", line 292, in 1380s from rdflib.resource import Resource 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 296, in 1380s class Resource: 1380s ...<164 lines>... 1380s return "Resource(%s,%s)" % (self._graph, self._identifier) 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 379, in Resource 1380s def value(self, p=RDF.value, o=None, default=None, any=True): 1380s ^^^^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 285, in __getattr__ 1380s return cls.__getitem__(name) 1380s ~~~~~~~~~~~~~~~^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 268, in __getitem__ 1380s raise AttributeError(f"term '{name}' not in namespace '{cls._NS}'") 1380s AttributeError: term 'value' not in namespace 'http://www.w3.org/1999/02/22-rdf-syntax-ns#' 1380s ====================================================================== 1380s ERROR: test_Phylo_igraph 1380s ---------------------------------------------------------------------- 1380s Traceback (most recent call last): 1380s File "/tmp/autopkgtest.qN7bY2/autopkgtest_tmp/Tests/run_tests.py", line 245, in runTest 1380s suite = loader.loadTestsFromName(name) 1380s File "/usr/lib/python3.14/unittest/loader.py", line 137, in loadTestsFromName 1380s module = __import__(module_name) 1380s File "/tmp/autopkgtest.qN7bY2/autopkgtest_tmp/Tests/test_Phylo_igraph.py", line 13, in 1380s from Bio import Phylo 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/__init__.py", line 14, in 1380s from Bio.Phylo._io import convert 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/_io.py", line 29, in 1380s from Bio.Phylo import CDAOIO 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/CDAOIO.py", line 37, in 1380s import rdflib 1380s File "/usr/lib/python3/dist-packages/rdflib/__init__.py", line 168, in 1380s from rdflib.graph import ConjunctiveGraph, Dataset, Graph 1380s File "/usr/lib/python3/dist-packages/rdflib/graph.py", line 292, in 1380s from rdflib.resource import Resource 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 296, in 1380s class Resource: 1380s ...<164 lines>... 1380s return "Resource(%s,%s)" % (self._graph, self._identifier) 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 379, in Resource 1380s def value(self, p=RDF.value, o=None, default=None, any=True): 1380s ^^^^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 285, in __getattr__ 1380s return cls.__getitem__(name) 1380s ~~~~~~~~~~~~~~~^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 268, in __getitem__ 1380s raise AttributeError(f"term '{name}' not in namespace '{cls._NS}'") 1380s AttributeError: term 'value' not in namespace 'http://www.w3.org/1999/02/22-rdf-syntax-ns#' 1380s ====================================================================== 1380s ERROR: test_Phylo_matplotlib 1380s ---------------------------------------------------------------------- 1380s Traceback (most recent call last): 1380s File "/tmp/autopkgtest.qN7bY2/autopkgtest_tmp/Tests/run_tests.py", line 245, in runTest 1380s suite = loader.loadTestsFromName(name) 1380s File "/usr/lib/python3.14/unittest/loader.py", line 137, in loadTestsFromName 1380s module = __import__(module_name) 1380s File "/tmp/autopkgtest.qN7bY2/autopkgtest_tmp/Tests/test_Phylo_matplotlib.py", line 13, in 1380s from Bio import Phylo 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/__init__.py", line 14, in 1380s from Bio.Phylo._io import convert 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/_io.py", line 29, in 1380s from Bio.Phylo import CDAOIO 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/CDAOIO.py", line 37, in 1380s import rdflib 1380s File "/usr/lib/python3/dist-packages/rdflib/__init__.py", line 168, in 1380s from rdflib.graph import ConjunctiveGraph, Dataset, Graph 1380s File "/usr/lib/python3/dist-packages/rdflib/graph.py", line 292, in 1380s from rdflib.resource import Resource 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 296, in 1380s class Resource: 1380s ...<164 lines>... 1380s return "Resource(%s,%s)" % (self._graph, self._identifier) 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 379, in Resource 1380s def value(self, p=RDF.value, o=None, default=None, any=True): 1380s ^^^^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 285, in __getattr__ 1380s return cls.__getitem__(name) 1380s ~~~~~~~~~~~~~~~^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 268, in __getitem__ 1380s raise AttributeError(f"term '{name}' not in namespace '{cls._NS}'") 1380s AttributeError: term 'value' not in namespace 'http://www.w3.org/1999/02/22-rdf-syntax-ns#' 1380s ====================================================================== 1380s ERROR: test_Phylo_networkx 1380s ---------------------------------------------------------------------- 1380s Traceback (most recent call last): 1380s File "/tmp/autopkgtest.qN7bY2/autopkgtest_tmp/Tests/run_tests.py", line 245, in runTest 1380s suite = loader.loadTestsFromName(name) 1380s File "/usr/lib/python3.14/unittest/loader.py", line 137, in loadTestsFromName 1380s module = __import__(module_name) 1380s File "/tmp/autopkgtest.qN7bY2/autopkgtest_tmp/Tests/test_Phylo_networkx.py", line 12, in 1380s from Bio import Phylo 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/__init__.py", line 14, in 1380s from Bio.Phylo._io import convert 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/_io.py", line 29, in 1380s from Bio.Phylo import CDAOIO 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/CDAOIO.py", line 37, in 1380s import rdflib 1380s File "/usr/lib/python3/dist-packages/rdflib/__init__.py", line 168, in 1380s from rdflib.graph import ConjunctiveGraph, Dataset, Graph 1380s File "/usr/lib/python3/dist-packages/rdflib/graph.py", line 292, in 1380s from rdflib.resource import Resource 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 296, in 1380s class Resource: 1380s ...<164 lines>... 1380s return "Resource(%s,%s)" % (self._graph, self._identifier) 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 379, in Resource 1380s def value(self, p=RDF.value, o=None, default=None, any=True): 1380s ^^^^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 285, in __getattr__ 1380s return cls.__getitem__(name) 1380s ~~~~~~~~~~~~~~~^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 268, in __getitem__ 1380s raise AttributeError(f"term '{name}' not in namespace '{cls._NS}'") 1380s AttributeError: term 'value' not in namespace 'http://www.w3.org/1999/02/22-rdf-syntax-ns#' 1380s ====================================================================== 1380s ERROR: test_TreeConstruction 1380s ---------------------------------------------------------------------- 1380s Traceback (most recent call last): 1380s File "/tmp/autopkgtest.qN7bY2/autopkgtest_tmp/Tests/run_tests.py", line 245, in runTest 1380s suite = loader.loadTestsFromName(name) 1380s File "/usr/lib/python3.14/unittest/loader.py", line 137, in loadTestsFromName 1380s module = __import__(module_name) 1380s File "/tmp/autopkgtest.qN7bY2/autopkgtest_tmp/Tests/test_TreeConstruction.py", line 16, in 1380s from Bio import Phylo 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/__init__.py", line 14, in 1380s from Bio.Phylo._io import convert 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/_io.py", line 29, in 1380s from Bio.Phylo import CDAOIO 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/CDAOIO.py", line 37, in 1380s import rdflib 1380s File "/usr/lib/python3/dist-packages/rdflib/__init__.py", line 168, in 1380s from rdflib.graph import ConjunctiveGraph, Dataset, Graph 1380s File "/usr/lib/python3/dist-packages/rdflib/graph.py", line 292, in 1380s from rdflib.resource import Resource 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 296, in 1380s class Resource: 1380s ...<164 lines>... 1380s return "Resource(%s,%s)" % (self._graph, self._identifier) 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 379, in Resource 1380s def value(self, p=RDF.value, o=None, default=None, any=True): 1380s ^^^^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 285, in __getattr__ 1380s return cls.__getitem__(name) 1380s ~~~~~~~~~~~~~~~^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 268, in __getitem__ 1380s raise AttributeError(f"term '{name}' not in namespace '{cls._NS}'") 1380s AttributeError: term 'value' not in namespace 'http://www.w3.org/1999/02/22-rdf-syntax-ns#' 1380s ====================================================================== 1380s ERROR: test_dn_ds_matrix (test_codonalign.Test_dn_ds.test_dn_ds_matrix) 1380s ---------------------------------------------------------------------- 1380s Traceback (most recent call last): 1380s File "/tmp/autopkgtest.qN7bY2/autopkgtest_tmp/Tests/test_codonalign.py", line 381, in test_dn_ds_matrix 1380s dn, ds = self.aln.get_dn_ds_matrix() 1380s ~~~~~~~~~~~~~~~~~~~~~~~~~^^ 1380s File "/usr/lib/python3/dist-packages/Bio/codonalign/codonalignment.py", line 159, in get_dn_ds_matrix 1380s from Bio.Phylo.TreeConstruction import DistanceMatrix as DM 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/__init__.py", line 14, in 1380s from Bio.Phylo._io import convert 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/_io.py", line 29, in 1380s from Bio.Phylo import CDAOIO 1380s File "/usr/lib/python3/dist-packages/Bio/Phylo/CDAOIO.py", line 37, in 1380s import rdflib 1380s File "/usr/lib/python3/dist-packages/rdflib/__init__.py", line 168, in 1380s from rdflib.graph import ConjunctiveGraph, Dataset, Graph 1380s File "/usr/lib/python3/dist-packages/rdflib/graph.py", line 292, in 1380s from rdflib.resource import Resource 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 296, in 1380s class Resource: 1380s ...<164 lines>... 1380s return "Resource(%s,%s)" % (self._graph, self._identifier) 1380s File "/usr/lib/python3/dist-packages/rdflib/resource.py", line 379, in Resource 1380s def value(self, p=RDF.value, o=None, default=None, any=True): 1380s ^^^^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 285, in __getattr__ 1380s return cls.__getitem__(name) 1380s ~~~~~~~~~~~~~~~^^^^^^ 1380s File "/usr/lib/python3/dist-packages/rdflib/namespace/__init__.py", line 268, in __getitem__ 1380s raise AttributeError(f"term '{name}' not in namespace '{cls._NS}'") 1380s AttributeError: term 'value' not in namespace 'http://www.w3.org/1999/02/22-rdf-syntax-ns#' 1380s 1380s ---------------------------------------------------------------------- 1380s Ran 201 tests in 160.285 seconds 1380s 1380s FAILED (failures = 15) 1380s :0: ResourceWarning: unclosed file <_io.TextIOWrapper name='Fasta/protein_lib.fa' mode='rt' encoding='UTF-8'> 1380s :0: ResourceWarning: unclosed file <_io.TextIOWrapper name='Fasta/nucleotide_lib.fa' mode='rt' encoding='UTF-8'> 1381s autopkgtest [20:47:47]: test full_suite: -----------------------] 1381s autopkgtest [20:47:47]: test full_suite: - - - - - - - - - - results - - - - - - - - - - 1381s full_suite FAIL non-zero exit status 1 1381s autopkgtest [20:47:47]: @@@@@@@@@@@@@@@@@@@@ summary 1381s dependencies PASS 1381s full_suite FAIL non-zero exit status 1