0s autopkgtest [19:38:40]: starting date and time: 2026-01-22 19:38:40+0000 0s autopkgtest [19:38:40]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [19:38:40]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ccepbv0x/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade pyensembl --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.14.2-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-ppc64el-23.secgroup --name adt-resolute-ppc64el-pyensembl-20260122-193840-juju-7f2275-prod-proposed-migration-environment-15-4660a214-ef1f-4063-8fa7-f8a443ca4523 --image adt/ubuntu-resolute-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-ppc64el-pyensembl-20260122-193840-juju-7f2275-prod-proposed-migration-environment-15-4660a214-ef1f-4063-8fa7-f8a443ca4523 from image adt/ubuntu-resolute-ppc64el-server-20260122.img (UUID 987e5803-394f-43eb-a969-151b6b75a57a)... 56s autopkgtest [19:39:36]: testbed dpkg architecture: ppc64el 56s autopkgtest [19:39:36]: testbed apt version: 3.1.12 56s autopkgtest [19:39:36]: @@@@@@@@@@@@@@@@@@@@ test bed setup 56s autopkgtest [19:39:36]: testbed release detected to be: None 57s autopkgtest [19:39:37]: updating testbed package index (apt update) 57s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 57s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 57s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 57s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 57s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [19.2 kB] 57s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [815 kB] 58s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [80.9 kB] 58s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 58s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el Packages [103 kB] 58s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el Packages [618 kB] 58s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse ppc64el Packages [4644 B] 58s Fetched 1768 kB in 1s (2023 kB/s) 59s Reading package lists... 59s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 59s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 59s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 59s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 60s Reading package lists... 60s Reading package lists... 60s Building dependency tree... 60s Reading state information... 61s Calculating upgrade... 61s The following packages were automatically installed and are no longer required: 61s python3.13 python3.13-minimal 61s Use 'sudo apt autoremove' to remove them. 61s The following NEW packages will be installed: 61s libpython3.14-minimal libpython3.14-stdlib python3.14 python3.14-minimal 61s The following packages will be upgraded: 61s libpython3-stdlib python3 python3-gdbm python3-minimal 61s 4 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 61s Need to get 6966 kB of archives. 61s After this operation, 27.7 MB of additional disk space will be used. 61s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpython3.14-minimal ppc64el 3.14.2-1 [921 kB] 61s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.14-minimal ppc64el 3.14.2-1 [2712 kB] 62s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-gdbm ppc64el 3.14.2-1 [11.1 kB] 62s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-minimal ppc64el 3.14.2-1 [28.2 kB] 62s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3 ppc64el 3.14.2-1 [22.9 kB] 62s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpython3.14-stdlib ppc64el 3.14.2-1 [2444 kB] 62s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.14 ppc64el 3.14.2-1 [816 kB] 62s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libpython3-stdlib ppc64el 3.14.2-1 [10.9 kB] 62s dpkg-preconfigure: unable to re-open stdin: No such file or directory 62s Fetched 6966 kB in 1s (5437 kB/s) 62s Selecting previously unselected package libpython3.14-minimal:ppc64el. 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 120824 files and directories currently installed.) 63s Preparing to unpack .../libpython3.14-minimal_3.14.2-1_ppc64el.deb ... 63s Unpacking libpython3.14-minimal:ppc64el (3.14.2-1) ... 63s Selecting previously unselected package python3.14-minimal. 63s Preparing to unpack .../python3.14-minimal_3.14.2-1_ppc64el.deb ... 63s Unpacking python3.14-minimal (3.14.2-1) ... 63s Preparing to unpack .../python3-gdbm_3.14.2-1_ppc64el.deb ... 63s Unpacking python3-gdbm (3.14.2-1) over (3.13.9-1) ... 63s Setting up libpython3.14-minimal:ppc64el (3.14.2-1) ... 63s Setting up python3.14-minimal (3.14.2-1) ... 64s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121166 files and directories currently installed.) 64s Preparing to unpack .../python3-minimal_3.14.2-1_ppc64el.deb ... 64s Unpacking python3-minimal (3.14.2-1) over (3.13.7-1) ... 64s Setting up python3-minimal (3.14.2-1) ... 65s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121166 files and directories currently installed.) 65s Preparing to unpack .../python3_3.14.2-1_ppc64el.deb ... 65s running python pre-rtupdate hooks for python3.14... 65s Unpacking python3 (3.14.2-1) over (3.13.7-1) ... 65s Selecting previously unselected package libpython3.14-stdlib:ppc64el. 65s Preparing to unpack .../libpython3.14-stdlib_3.14.2-1_ppc64el.deb ... 65s Unpacking libpython3.14-stdlib:ppc64el (3.14.2-1) ... 65s Selecting previously unselected package python3.14. 65s Preparing to unpack .../python3.14_3.14.2-1_ppc64el.deb ... 65s Unpacking python3.14 (3.14.2-1) ... 65s Preparing to unpack .../libpython3-stdlib_3.14.2-1_ppc64el.deb ... 65s Unpacking libpython3-stdlib:ppc64el (3.14.2-1) over (3.13.7-1) ... 65s Setting up libpython3.14-stdlib:ppc64el (3.14.2-1) ... 65s Setting up python3.14 (3.14.2-1) ... 67s Setting up libpython3-stdlib:ppc64el (3.14.2-1) ... 67s Setting up python3-gdbm (3.14.2-1) ... 67s Setting up python3 (3.14.2-1) ... 67s running python rtupdate hooks for python3.14... 67s running python post-rtupdate hooks for python3.14... 67s Processing triggers for man-db (2.13.1-1) ... 68s Processing triggers for systemd (259-1ubuntu2) ... 68s autopkgtest [19:39:48]: upgrading testbed (apt dist-upgrade and autopurge) 68s Reading package lists... 68s Building dependency tree... 68s Reading state information... 68s Calculating upgrade... 68s The following packages were automatically installed and are no longer required: 68s python3.13 python3.13-minimal 68s Use 'sudo apt autoremove' to remove them. 68s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 69s Reading package lists... 69s Building dependency tree... 69s Reading state information... 69s Solving dependencies... 69s The following packages will be REMOVED: 69s python3.13* python3.13-minimal* 69s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 69s After this operation, 9077 kB disk space will be freed. 69s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121596 files and directories currently installed.) 69s Removing python3.13 (3.13.11-1) ... 69s Removing python3.13-minimal (3.13.11-1) ... 71s Processing triggers for man-db (2.13.1-1) ... 71s Processing triggers for systemd (259-1ubuntu2) ... 71s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121569 files and directories currently installed.) 71s Purging configuration files for python3.13-minimal (3.13.11-1) ... 74s autopkgtest [19:39:54]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:45:54 UTC 2026 74s autopkgtest [19:39:54]: @@@@@@@@@@@@@@@@@@@@ apt-source pyensembl 75s Get:1 http://ftpmaster.internal/ubuntu resolute/universe pyensembl 2.3.13-2 (dsc) [2291 B] 75s Get:2 http://ftpmaster.internal/ubuntu resolute/universe pyensembl 2.3.13-2 (tar) [60.7 kB] 75s Get:3 http://ftpmaster.internal/ubuntu resolute/universe pyensembl 2.3.13-2 (diff) [5448 B] 75s gpgv: Signature made Sun Feb 16 22:16:52 2025 UTC 75s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 75s gpgv: issuer "tchet@debian.org" 75s gpgv: Can't check signature: No public key 75s dpkg-source: warning: cannot verify inline signature for ./pyensembl_2.3.13-2.dsc: no acceptable signature found 75s autopkgtest [19:39:55]: testing package pyensembl version 2.3.13-2 76s autopkgtest [19:39:56]: build not needed 76s autopkgtest [19:39:56]: test run-unit-test: preparing testbed 76s Reading package lists... 76s Building dependency tree... 76s Reading state information... 76s Solving dependencies... 76s The following NEW packages will be installed: 76s libblas3 libgfortran5 liblapack3 pyensembl pylint python3-all 76s python3-astroid python3-datacache python3-dill python3-gtfparse 76s python3-iniconfig python3-isort python3-logilab-common python3-mccabe 76s python3-memoized-property python3-mypy-extensions python3-numpy 76s python3-numpy-dev python3-pandas python3-pandas-lib python3-platformdirs 76s python3-pluggy python3-pytest python3-pytz python3-serializable 76s python3-tomlkit python3-typechecks python3.13 python3.13-minimal 76s 0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded. 76s Need to get 24.5 MB of archives. 76s After this operation, 143 MB of additional disk space will be used. 76s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.13-minimal ppc64el 3.13.11-1 [2571 kB] 77s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy-dev ppc64el 1:2.3.5+ds-3 [153 kB] 77s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el libblas3 ppc64el 3.12.1-7ubuntu1 [291 kB] 77s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgfortran5 ppc64el 15.2.0-11ubuntu1 [620 kB] 77s Get:5 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblapack3 ppc64el 3.12.1-7ubuntu1 [2960 kB] 77s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy ppc64el 1:2.3.5+ds-3 [5722 kB] 77s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.13 ppc64el 3.13.11-1 [758 kB] 77s Get:8 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-astroid all 4.0.2-1ubuntu1 [172 kB] 77s Get:9 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-isort all 7.0.0-1 [59.7 kB] 77s Get:10 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-mypy-extensions all 1.1.0-1 [6716 B] 77s Get:11 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-logilab-common all 2.1.0-1 [95.7 kB] 77s Get:12 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-dill all 0.4.0-1 [84.8 kB] 77s Get:13 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-mccabe all 0.7.0-1build1 [8926 B] 77s Get:14 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-platformdirs all 4.5.1-1 [17.1 kB] 77s Get:15 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-tomlkit all 0.13.3-2 [39.1 kB] 77s Get:16 http://ftpmaster.internal/ubuntu resolute/universe ppc64el pylint all 4.0.4-1 [346 kB] 77s Get:17 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pytz all 2025.2-5 [32.4 kB] 77s Get:18 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pandas-lib ppc64el 2.3.3+dfsg-3 [7213 kB] 77s Get:19 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pandas all 2.3.3+dfsg-3 [2948 kB] 77s Get:20 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-typechecks all 0.1.0+ds-4 [4562 B] 77s Get:21 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-datacache all 1.4.1-2 [13.1 kB] 77s Get:22 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-gtfparse all 1.3.0+ds-2 [10.3 kB] 77s Get:23 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-memoized-property all 1.0.3-2build1 [5328 B] 77s Get:24 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-serializable all 0.4.1+ds-2 [8438 B] 77s Get:25 http://ftpmaster.internal/ubuntu resolute/universe ppc64el pyensembl all 2.3.13-2 [37.2 kB] 77s Get:26 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-all ppc64el 3.14.2-1 [890 B] 77s Get:27 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-iniconfig all 2.1.0-2 [6962 B] 77s Get:28 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pluggy all 1.6.0-2 [21.1 kB] 77s Get:29 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pytest all 9.0.2-2 [277 kB] 78s Fetched 24.5 MB in 1s (21.3 MB/s) 78s Selecting previously unselected package python3.13-minimal. 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121571 files and directories currently installed.) 78s Preparing to unpack .../00-python3.13-minimal_3.13.11-1_ppc64el.deb ... 78s Unpacking python3.13-minimal (3.13.11-1) ... 78s Selecting previously unselected package python3-numpy-dev:ppc64el. 78s Preparing to unpack .../01-python3-numpy-dev_1%3a2.3.5+ds-3_ppc64el.deb ... 78s Unpacking python3-numpy-dev:ppc64el (1:2.3.5+ds-3) ... 78s Selecting previously unselected package libblas3:ppc64el. 78s Preparing to unpack .../02-libblas3_3.12.1-7ubuntu1_ppc64el.deb ... 78s Unpacking libblas3:ppc64el (3.12.1-7ubuntu1) ... 78s Selecting previously unselected package libgfortran5:ppc64el. 78s Preparing to unpack .../03-libgfortran5_15.2.0-11ubuntu1_ppc64el.deb ... 78s Unpacking libgfortran5:ppc64el (15.2.0-11ubuntu1) ... 78s Selecting previously unselected package liblapack3:ppc64el. 78s Preparing to unpack .../04-liblapack3_3.12.1-7ubuntu1_ppc64el.deb ... 78s Unpacking liblapack3:ppc64el (3.12.1-7ubuntu1) ... 78s Selecting previously unselected package python3-numpy. 78s Preparing to unpack .../05-python3-numpy_1%3a2.3.5+ds-3_ppc64el.deb ... 78s Unpacking python3-numpy (1:2.3.5+ds-3) ... 78s Selecting previously unselected package python3.13. 78s Preparing to unpack .../06-python3.13_3.13.11-1_ppc64el.deb ... 78s Unpacking python3.13 (3.13.11-1) ... 78s Selecting previously unselected package python3-astroid. 78s Preparing to unpack .../07-python3-astroid_4.0.2-1ubuntu1_all.deb ... 78s Unpacking python3-astroid (4.0.2-1ubuntu1) ... 78s Selecting previously unselected package python3-isort. 78s Preparing to unpack .../08-python3-isort_7.0.0-1_all.deb ... 78s Unpacking python3-isort (7.0.0-1) ... 78s Selecting previously unselected package python3-mypy-extensions. 78s Preparing to unpack .../09-python3-mypy-extensions_1.1.0-1_all.deb ... 78s Unpacking python3-mypy-extensions (1.1.0-1) ... 78s Selecting previously unselected package python3-logilab-common. 78s Preparing to unpack .../10-python3-logilab-common_2.1.0-1_all.deb ... 78s Unpacking python3-logilab-common (2.1.0-1) ... 78s Selecting previously unselected package python3-dill. 78s Preparing to unpack .../11-python3-dill_0.4.0-1_all.deb ... 78s Unpacking python3-dill (0.4.0-1) ... 78s Selecting previously unselected package python3-mccabe. 78s Preparing to unpack .../12-python3-mccabe_0.7.0-1build1_all.deb ... 78s Unpacking python3-mccabe (0.7.0-1build1) ... 78s Selecting previously unselected package python3-platformdirs. 78s Preparing to unpack .../13-python3-platformdirs_4.5.1-1_all.deb ... 78s Unpacking python3-platformdirs (4.5.1-1) ... 78s Selecting previously unselected package python3-tomlkit. 78s Preparing to unpack .../14-python3-tomlkit_0.13.3-2_all.deb ... 78s Unpacking python3-tomlkit (0.13.3-2) ... 78s Selecting previously unselected package pylint. 78s Preparing to unpack .../15-pylint_4.0.4-1_all.deb ... 78s Unpacking pylint (4.0.4-1) ... 78s Selecting previously unselected package python3-pytz. 78s Preparing to unpack .../16-python3-pytz_2025.2-5_all.deb ... 78s Unpacking python3-pytz (2025.2-5) ... 78s Selecting previously unselected package python3-pandas-lib:ppc64el. 78s Preparing to unpack .../17-python3-pandas-lib_2.3.3+dfsg-3_ppc64el.deb ... 78s Unpacking python3-pandas-lib:ppc64el (2.3.3+dfsg-3) ... 79s Selecting previously unselected package python3-pandas. 79s Preparing to unpack .../18-python3-pandas_2.3.3+dfsg-3_all.deb ... 79s Unpacking python3-pandas (2.3.3+dfsg-3) ... 79s Selecting previously unselected package python3-typechecks. 79s Preparing to unpack .../19-python3-typechecks_0.1.0+ds-4_all.deb ... 79s Unpacking python3-typechecks (0.1.0+ds-4) ... 79s Selecting previously unselected package python3-datacache. 79s Preparing to unpack .../20-python3-datacache_1.4.1-2_all.deb ... 79s Unpacking python3-datacache (1.4.1-2) ... 79s Selecting previously unselected package python3-gtfparse. 79s Preparing to unpack .../21-python3-gtfparse_1.3.0+ds-2_all.deb ... 79s Unpacking python3-gtfparse (1.3.0+ds-2) ... 79s Selecting previously unselected package python3-memoized-property. 79s Preparing to unpack .../22-python3-memoized-property_1.0.3-2build1_all.deb ... 79s Unpacking python3-memoized-property (1.0.3-2build1) ... 79s Selecting previously unselected package python3-serializable. 79s Preparing to unpack .../23-python3-serializable_0.4.1+ds-2_all.deb ... 79s Unpacking python3-serializable (0.4.1+ds-2) ... 79s Selecting previously unselected package pyensembl. 79s Preparing to unpack .../24-pyensembl_2.3.13-2_all.deb ... 79s Unpacking pyensembl (2.3.13-2) ... 79s Selecting previously unselected package python3-all. 79s Preparing to unpack .../25-python3-all_3.14.2-1_ppc64el.deb ... 79s Unpacking python3-all (3.14.2-1) ... 79s Selecting previously unselected package python3-iniconfig. 79s Preparing to unpack .../26-python3-iniconfig_2.1.0-2_all.deb ... 79s Unpacking python3-iniconfig (2.1.0-2) ... 79s Selecting previously unselected package python3-pluggy. 79s Preparing to unpack .../27-python3-pluggy_1.6.0-2_all.deb ... 79s Unpacking python3-pluggy (1.6.0-2) ... 79s Selecting previously unselected package python3-pytest. 79s Preparing to unpack .../28-python3-pytest_9.0.2-2_all.deb ... 79s Unpacking python3-pytest (9.0.2-2) ... 79s Setting up python3-iniconfig (2.1.0-2) ... 79s Setting up python3-typechecks (0.1.0+ds-4) ... 80s Setting up python3-memoized-property (1.0.3-2build1) ... 80s Setting up python3-mypy-extensions (1.1.0-1) ... 80s Setting up python3-pytz (2025.2-5) ... 80s Setting up python3-serializable (0.4.1+ds-2) ... 80s Setting up python3-platformdirs (4.5.1-1) ... 80s Setting up libblas3:ppc64el (3.12.1-7ubuntu1) ... 80s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 80s Setting up python3-dill (0.4.0-1) ... 81s Setting up python3-numpy-dev:ppc64el (1:2.3.5+ds-3) ... 81s Setting up libgfortran5:ppc64el (15.2.0-11ubuntu1) ... 81s Setting up python3-isort (7.0.0-1) ... 81s Setting up python3-pluggy (1.6.0-2) ... 81s Setting up python3-astroid (4.0.2-1ubuntu1) ... 82s Setting up python3.13-minimal (3.13.11-1) ... 83s Setting up python3-mccabe (0.7.0-1build1) ... 83s Setting up python3-tomlkit (0.13.3-2) ... 83s Setting up liblapack3:ppc64el (3.12.1-7ubuntu1) ... 83s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 83s Setting up python3-logilab-common (2.1.0-1) ... 83s Setting up python3.13 (3.13.11-1) ... 85s Setting up python3-pytest (9.0.2-2) ... 86s Setting up python3-all (3.14.2-1) ... 86s Setting up python3-numpy (1:2.3.5+ds-3) ... 89s Setting up pylint (4.0.4-1) ... 90s Setting up python3-pandas-lib:ppc64el (2.3.3+dfsg-3) ... 90s Setting up python3-pandas (2.3.3+dfsg-3) ... 99s Setting up python3-datacache (1.4.1-2) ... 99s Setting up python3-gtfparse (1.3.0+ds-2) ... 100s Setting up pyensembl (2.3.13-2) ... 100s Processing triggers for systemd (259-1ubuntu2) ... 100s Processing triggers for man-db (2.13.1-1) ... 100s Processing triggers for libc-bin (2.42-2ubuntu4) ... 101s autopkgtest [19:40:21]: test run-unit-test: [----------------------- 103s ============================= test session starts ============================== 103s platform linux -- Python 3.13.11, pytest-9.0.2, pluggy-1.6.0 103s rootdir: /tmp/autopkgtest.mL00jc/autopkgtest_tmp 103s plugins: typeguard-4.4.4 103s collected 15 items 103s 103s tests/test_ensembl_object_properties.py . [ 6%] 103s tests/test_locus.py ...... [ 46%] 103s tests/test_release_versions.py ....... [ 93%] 103s tests/test_shell.py . [100%] 103s 103s =============================== warnings summary =============================== 103s ../../../usr/lib/python3/dist-packages/pyensembl/shell.py:43 103s /usr/lib/python3/dist-packages/pyensembl/shell.py:43: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 103s import pkg_resources 103s 103s ../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:3147 103s /usr/lib/python3/dist-packages/pkg_resources/__init__.py:3147: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('logilab')`. 103s Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages 103s declare_namespace(pkg) 103s 103s ../../../usr/lib/python3/dist-packages/pyensembl/shell.py:74 103s /usr/lib/python3/dist-packages/pyensembl/shell.py:74: DeprecationWarning: Nesting argument groups is deprecated. 103s release_group = root_group.add_argument_group() 103s 103s ../../../usr/lib/python3/dist-packages/pyensembl/shell.py:96 103s /usr/lib/python3/dist-packages/pyensembl/shell.py:96: DeprecationWarning: Nesting argument groups is deprecated. 103s path_group = root_group.add_argument_group() 103s 103s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 103s ======================== 15 passed, 4 warnings in 1.21s ======================== 105s ============================= test session starts ============================== 105s platform linux -- Python 3.14.2, pytest-9.0.2, pluggy-1.6.0 105s rootdir: /tmp/autopkgtest.mL00jc/autopkgtest_tmp 105s plugins: typeguard-4.4.4 105s collected 14 items / 1 error 105s 105s ==================================== ERRORS ==================================== 105s _____________________ ERROR collecting tests/test_shell.py _____________________ 105s tests/test_shell.py:1: in 105s from pyensembl.shell import parser, all_combinations_of_ensembl_genomes 105s /usr/lib/python3/dist-packages/pyensembl/shell.py:74: in 105s release_group = root_group.add_argument_group() 105s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 105s /usr/lib/python3.14/argparse.py:1805: in add_argument_group 105s raise ValueError('argument groups cannot be nested') 105s E ValueError: argument groups cannot be nested 105s =============================== warnings summary =============================== 105s ../../../usr/lib/python3/dist-packages/pyensembl/shell.py:43 105s /usr/lib/python3/dist-packages/pyensembl/shell.py:43: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 105s import pkg_resources 105s 105s ../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:3147 105s /usr/lib/python3/dist-packages/pkg_resources/__init__.py:3147: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('logilab')`. 105s Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages 105s declare_namespace(pkg) 105s 105s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 105s =========================== short test summary info ============================ 105s ERROR tests/test_shell.py - ValueError: argument groups cannot be nested 105s !!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!! 105s ========================= 2 warnings, 1 error in 1.00s ========================= 105s autopkgtest [19:40:25]: test run-unit-test: -----------------------] 105s run-unit-test FAIL non-zero exit status 2 105s autopkgtest [19:40:25]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 106s autopkgtest [19:40:26]: test pybuild-autopkgtest: preparing testbed 124s Creating nova instance adt-resolute-ppc64el-pyensembl-20260122-193840-juju-7f2275-prod-proposed-migration-environment-15-4660a214-ef1f-4063-8fa7-f8a443ca4523 from image adt/ubuntu-resolute-ppc64el-server-20260122.img (UUID 987e5803-394f-43eb-a969-151b6b75a57a)... 175s autopkgtest [19:41:35]: testbed dpkg architecture: ppc64el 175s autopkgtest [19:41:35]: testbed apt version: 3.1.12 176s autopkgtest [19:41:36]: @@@@@@@@@@@@@@@@@@@@ test bed setup 176s autopkgtest [19:41:36]: testbed release detected to be: resolute 176s autopkgtest [19:41:36]: updating testbed package index (apt update) 177s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 177s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 177s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 177s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 177s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [815 kB] 177s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [19.2 kB] 177s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 177s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [80.9 kB] 177s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el Packages [103 kB] 177s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el Packages [618 kB] 177s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse ppc64el Packages [4644 B] 177s Fetched 1768 kB in 1s (2680 kB/s) 178s Reading package lists... 179s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 179s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 179s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 179s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 180s Reading package lists... 180s Reading package lists... 180s Building dependency tree... 180s Reading state information... 180s Calculating upgrade... 180s The following packages were automatically installed and are no longer required: 180s python3.13 python3.13-minimal 180s Use 'sudo apt autoremove' to remove them. 180s The following NEW packages will be installed: 180s libpython3.14-minimal libpython3.14-stdlib python3.14 python3.14-minimal 180s The following packages will be upgraded: 180s libpython3-stdlib python3 python3-gdbm python3-minimal 180s 4 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 180s Need to get 6966 kB of archives. 180s After this operation, 27.7 MB of additional disk space will be used. 180s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpython3.14-minimal ppc64el 3.14.2-1 [921 kB] 180s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.14-minimal ppc64el 3.14.2-1 [2712 kB] 180s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-gdbm ppc64el 3.14.2-1 [11.1 kB] 180s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-minimal ppc64el 3.14.2-1 [28.2 kB] 180s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3 ppc64el 3.14.2-1 [22.9 kB] 180s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpython3.14-stdlib ppc64el 3.14.2-1 [2444 kB] 180s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.14 ppc64el 3.14.2-1 [816 kB] 180s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libpython3-stdlib ppc64el 3.14.2-1 [10.9 kB] 181s dpkg-preconfigure: unable to re-open stdin: No such file or directory 181s Fetched 6966 kB in 0s (14.2 MB/s) 181s Selecting previously unselected package libpython3.14-minimal:ppc64el. 181s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 120824 files and directories currently installed.) 181s Preparing to unpack .../libpython3.14-minimal_3.14.2-1_ppc64el.deb ... 181s Unpacking libpython3.14-minimal:ppc64el (3.14.2-1) ... 181s Selecting previously unselected package python3.14-minimal. 181s Preparing to unpack .../python3.14-minimal_3.14.2-1_ppc64el.deb ... 181s Unpacking python3.14-minimal (3.14.2-1) ... 182s Preparing to unpack .../python3-gdbm_3.14.2-1_ppc64el.deb ... 182s Unpacking python3-gdbm (3.14.2-1) over (3.13.9-1) ... 182s Setting up libpython3.14-minimal:ppc64el (3.14.2-1) ... 182s Setting up python3.14-minimal (3.14.2-1) ... 183s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121166 files and directories currently installed.) 183s Preparing to unpack .../python3-minimal_3.14.2-1_ppc64el.deb ... 183s Unpacking python3-minimal (3.14.2-1) over (3.13.7-1) ... 183s Setting up python3-minimal (3.14.2-1) ... 184s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121166 files and directories currently installed.) 184s Preparing to unpack .../python3_3.14.2-1_ppc64el.deb ... 184s running python pre-rtupdate hooks for python3.14... 184s Unpacking python3 (3.14.2-1) over (3.13.7-1) ... 184s Selecting previously unselected package libpython3.14-stdlib:ppc64el. 184s Preparing to unpack .../libpython3.14-stdlib_3.14.2-1_ppc64el.deb ... 184s Unpacking libpython3.14-stdlib:ppc64el (3.14.2-1) ... 184s Selecting previously unselected package python3.14. 184s Preparing to unpack .../python3.14_3.14.2-1_ppc64el.deb ... 184s Unpacking python3.14 (3.14.2-1) ... 184s Preparing to unpack .../libpython3-stdlib_3.14.2-1_ppc64el.deb ... 184s Unpacking libpython3-stdlib:ppc64el (3.14.2-1) over (3.13.7-1) ... 184s Setting up libpython3.14-stdlib:ppc64el (3.14.2-1) ... 184s Setting up python3.14 (3.14.2-1) ... 186s Setting up libpython3-stdlib:ppc64el (3.14.2-1) ... 186s Setting up python3-gdbm (3.14.2-1) ... 186s Setting up python3 (3.14.2-1) ... 186s running python rtupdate hooks for python3.14... 186s running python post-rtupdate hooks for python3.14... 186s Processing triggers for man-db (2.13.1-1) ... 187s Processing triggers for systemd (259-1ubuntu2) ... 187s autopkgtest [19:41:47]: upgrading testbed (apt dist-upgrade and autopurge) 187s Reading package lists... 187s Building dependency tree... 187s Reading state information... 187s Calculating upgrade... 187s The following packages were automatically installed and are no longer required: 187s python3.13 python3.13-minimal 187s Use 'sudo apt autoremove' to remove them. 188s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 188s Reading package lists... 188s Building dependency tree... 188s Reading state information... 188s Solving dependencies... 188s The following packages will be REMOVED: 188s python3.13* python3.13-minimal* 188s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 188s After this operation, 9077 kB disk space will be freed. 188s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121596 files and directories currently installed.) 188s Removing python3.13 (3.13.11-1) ... 188s Removing python3.13-minimal (3.13.11-1) ... 190s Processing triggers for man-db (2.13.1-1) ... 190s Processing triggers for systemd (259-1ubuntu2) ... 191s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121569 files and directories currently installed.) 191s Purging configuration files for python3.13-minimal (3.13.11-1) ... 203s Reading package lists... 203s Building dependency tree... 203s Reading state information... 203s Solving dependencies... 203s The following NEW packages will be installed: 203s autoconf automake autopoint autotools-dev build-essential cpp cpp-15 203s cpp-15-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu debhelper debugedit 203s dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-15 203s g++-15-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-15 203s gcc-15-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gettext 203s intltool-debian libarchive-zip-perl libasan8 libblas3 libcc1-0 203s libdebhelper-perl libfile-stripnondeterminism-perl libgcc-15-dev 203s libgfortran5 libgomp1 libisl23 libitm1 liblapack3 liblsan0 libmpc3 203s libquadmath0 libstdc++-15-dev libtool libtsan2 libubsan1 m4 po-debconf 203s pybuild-plugin-autopkgtest pyensembl pylint python3-all python3-astroid 203s python3-datacache python3-dill python3-gtfparse python3-iniconfig 203s python3-isort python3-logilab-common python3-mccabe 203s python3-memoized-property python3-mypy-extensions python3-numpy 203s python3-numpy-dev python3-pandas python3-pandas-lib python3-platformdirs 203s python3-pluggy python3-pytest python3-pytz python3-serializable 203s python3-tomlkit python3-typechecks python3.13 python3.13-minimal 203s 0 upgraded, 73 newly installed, 0 to remove and 0 not upgraded. 203s Need to get 90.9 MB of archives. 203s After this operation, 378 MB of additional disk space will be used. 203s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.13-minimal ppc64el 3.13.11-1 [2571 kB] 203s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy-dev ppc64el 1:2.3.5+ds-3 [153 kB] 203s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el libblas3 ppc64el 3.12.1-7ubuntu1 [291 kB] 203s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgfortran5 ppc64el 15.2.0-11ubuntu1 [620 kB] 203s Get:5 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblapack3 ppc64el 3.12.1-7ubuntu1 [2960 kB] 203s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy ppc64el 1:2.3.5+ds-3 [5722 kB] 203s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.13 ppc64el 3.13.11-1 [758 kB] 203s Get:8 http://ftpmaster.internal/ubuntu resolute/main ppc64el m4 ppc64el 1.4.20-2 [236 kB] 203s Get:9 http://ftpmaster.internal/ubuntu resolute/main ppc64el autoconf all 2.72-3.1ubuntu1 [384 kB] 203s Get:10 http://ftpmaster.internal/ubuntu resolute/main ppc64el autotools-dev all 20240727.1 [43.4 kB] 203s Get:11 http://ftpmaster.internal/ubuntu resolute/main ppc64el automake all 1:1.18.1-3build1 [582 kB] 203s Get:12 http://ftpmaster.internal/ubuntu resolute/main ppc64el autopoint all 0.23.2-1 [620 kB] 203s Get:13 http://ftpmaster.internal/ubuntu resolute/main ppc64el libisl23 ppc64el 0.27-1build1 [893 kB] 203s Get:14 http://ftpmaster.internal/ubuntu resolute/main ppc64el libmpc3 ppc64el 1.3.1-2 [62.5 kB] 203s Get:15 http://ftpmaster.internal/ubuntu resolute/main ppc64el cpp-15-powerpc64le-linux-gnu ppc64el 15.2.0-11ubuntu1 [11.4 MB] 203s Get:16 http://ftpmaster.internal/ubuntu resolute/main ppc64el cpp-15 ppc64el 15.2.0-11ubuntu1 [1038 B] 203s Get:17 http://ftpmaster.internal/ubuntu resolute/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:15.2.0-4ubuntu1 [5746 B] 203s Get:18 http://ftpmaster.internal/ubuntu resolute/main ppc64el cpp ppc64el 4:15.2.0-4ubuntu1 [22.4 kB] 203s Get:19 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcc1-0 ppc64el 15.2.0-11ubuntu1 [49.0 kB] 203s Get:20 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgomp1 ppc64el 15.2.0-11ubuntu1 [169 kB] 203s Get:21 http://ftpmaster.internal/ubuntu resolute/main ppc64el libitm1 ppc64el 15.2.0-11ubuntu1 [32.2 kB] 203s Get:22 http://ftpmaster.internal/ubuntu resolute/main ppc64el libasan8 ppc64el 15.2.0-11ubuntu1 [3006 kB] 203s Get:23 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblsan0 ppc64el 15.2.0-11ubuntu1 [1374 kB] 203s Get:24 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtsan2 ppc64el 15.2.0-11ubuntu1 [2728 kB] 203s Get:25 http://ftpmaster.internal/ubuntu resolute/main ppc64el libubsan1 ppc64el 15.2.0-11ubuntu1 [1231 kB] 203s Get:26 http://ftpmaster.internal/ubuntu resolute/main ppc64el libquadmath0 ppc64el 15.2.0-11ubuntu1 [160 kB] 203s Get:27 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgcc-15-dev ppc64el 15.2.0-11ubuntu1 [1670 kB] 203s Get:28 http://ftpmaster.internal/ubuntu resolute/main ppc64el gcc-15-powerpc64le-linux-gnu ppc64el 15.2.0-11ubuntu1 [22.4 MB] 203s Get:29 http://ftpmaster.internal/ubuntu resolute/main ppc64el gcc-15 ppc64el 15.2.0-11ubuntu1 [528 kB] 203s Get:30 http://ftpmaster.internal/ubuntu resolute/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:15.2.0-4ubuntu1 [1220 B] 203s Get:31 http://ftpmaster.internal/ubuntu resolute/main ppc64el gcc ppc64el 4:15.2.0-4ubuntu1 [5032 B] 203s Get:32 http://ftpmaster.internal/ubuntu resolute/main ppc64el libstdc++-15-dev ppc64el 15.2.0-11ubuntu1 [2745 kB] 203s Get:33 http://ftpmaster.internal/ubuntu resolute/main ppc64el g++-15-powerpc64le-linux-gnu ppc64el 15.2.0-11ubuntu1 [13.0 MB] 203s Get:34 http://ftpmaster.internal/ubuntu resolute/main ppc64el g++-15 ppc64el 15.2.0-11ubuntu1 [24.6 kB] 203s Get:35 http://ftpmaster.internal/ubuntu resolute/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:15.2.0-4ubuntu1 [970 B] 203s Get:36 http://ftpmaster.internal/ubuntu resolute/main ppc64el g++ ppc64el 4:15.2.0-4ubuntu1 [1092 B] 203s Get:37 http://ftpmaster.internal/ubuntu resolute/main ppc64el build-essential ppc64el 12.12ubuntu2 [5256 B] 203s Get:38 http://ftpmaster.internal/ubuntu resolute/main ppc64el libdebhelper-perl all 13.28ubuntu1 [97.4 kB] 203s Get:39 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtool all 2.5.4-9 [169 kB] 203s Get:40 http://ftpmaster.internal/ubuntu resolute/main ppc64el dh-autoreconf all 21 [12.5 kB] 203s Get:41 http://ftpmaster.internal/ubuntu resolute/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] 203s Get:42 http://ftpmaster.internal/ubuntu resolute/main ppc64el libfile-stripnondeterminism-perl all 1.15.0-1build1 [20.6 kB] 203s Get:43 http://ftpmaster.internal/ubuntu resolute/main ppc64el dh-strip-nondeterminism all 1.15.0-1build1 [5110 B] 203s Get:44 http://ftpmaster.internal/ubuntu resolute/main ppc64el debugedit ppc64el 1:5.2-3 [57.3 kB] 203s Get:45 http://ftpmaster.internal/ubuntu resolute/main ppc64el dwz ppc64el 0.16-2 [142 kB] 203s Get:46 http://ftpmaster.internal/ubuntu resolute/main ppc64el gettext ppc64el 0.23.2-1 [1177 kB] 203s Get:47 http://ftpmaster.internal/ubuntu resolute/main ppc64el intltool-debian all 0.35.0+20060710.6build1 [24.1 kB] 203s Get:48 http://ftpmaster.internal/ubuntu resolute/main ppc64el po-debconf all 1.0.22 [215 kB] 203s Get:49 http://ftpmaster.internal/ubuntu resolute/main ppc64el debhelper all 13.28ubuntu1 [916 kB] 203s Get:50 http://ftpmaster.internal/ubuntu resolute/universe ppc64el dh-python all 7.20251231 [122 kB] 203s Get:51 http://ftpmaster.internal/ubuntu resolute/universe ppc64el pybuild-plugin-autopkgtest all 7.20251231 [1748 B] 203s Get:52 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-astroid all 4.0.2-1ubuntu1 [172 kB] 203s Get:53 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-isort all 7.0.0-1 [59.7 kB] 203s Get:54 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-mypy-extensions all 1.1.0-1 [6716 B] 203s Get:55 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-logilab-common all 2.1.0-1 [95.7 kB] 203s Get:56 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-dill all 0.4.0-1 [84.8 kB] 203s Get:57 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-mccabe all 0.7.0-1build1 [8926 B] 203s Get:58 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-platformdirs all 4.5.1-1 [17.1 kB] 203s Get:59 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-tomlkit all 0.13.3-2 [39.1 kB] 203s Get:60 http://ftpmaster.internal/ubuntu resolute/universe ppc64el pylint all 4.0.4-1 [346 kB] 203s Get:61 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pytz all 2025.2-5 [32.4 kB] 203s Get:62 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pandas-lib ppc64el 2.3.3+dfsg-3 [7213 kB] 203s Get:63 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pandas all 2.3.3+dfsg-3 [2948 kB] 203s Get:64 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-typechecks all 0.1.0+ds-4 [4562 B] 203s Get:65 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-datacache all 1.4.1-2 [13.1 kB] 203s Get:66 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-gtfparse all 1.3.0+ds-2 [10.3 kB] 203s Get:67 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-memoized-property all 1.0.3-2build1 [5328 B] 203s Get:68 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-serializable all 0.4.1+ds-2 [8438 B] 203s Get:69 http://ftpmaster.internal/ubuntu resolute/universe ppc64el pyensembl all 2.3.13-2 [37.2 kB] 203s Get:70 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-all ppc64el 3.14.2-1 [890 B] 203s Get:71 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-iniconfig all 2.1.0-2 [6962 B] 203s Get:72 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pluggy all 1.6.0-2 [21.1 kB] 203s Get:73 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pytest all 9.0.2-2 [277 kB] 203s Fetched 90.9 MB in 5s (17.7 MB/s) 203s Selecting previously unselected package python3.13-minimal. 203s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121571 files and directories currently installed.) 203s Preparing to unpack .../00-python3.13-minimal_3.13.11-1_ppc64el.deb ... 203s Unpacking python3.13-minimal (3.13.11-1) ... 203s Selecting previously unselected package python3-numpy-dev:ppc64el. 203s Preparing to unpack .../01-python3-numpy-dev_1%3a2.3.5+ds-3_ppc64el.deb ... 203s Unpacking python3-numpy-dev:ppc64el (1:2.3.5+ds-3) ... 203s Selecting previously unselected package libblas3:ppc64el. 203s Preparing to unpack .../02-libblas3_3.12.1-7ubuntu1_ppc64el.deb ... 203s Unpacking libblas3:ppc64el (3.12.1-7ubuntu1) ... 203s Selecting previously unselected package libgfortran5:ppc64el. 203s Preparing to unpack .../03-libgfortran5_15.2.0-11ubuntu1_ppc64el.deb ... 203s Unpacking libgfortran5:ppc64el (15.2.0-11ubuntu1) ... 203s Selecting previously unselected package liblapack3:ppc64el. 203s Preparing to unpack .../04-liblapack3_3.12.1-7ubuntu1_ppc64el.deb ... 203s Unpacking liblapack3:ppc64el (3.12.1-7ubuntu1) ... 203s Selecting previously unselected package python3-numpy. 203s Preparing to unpack .../05-python3-numpy_1%3a2.3.5+ds-3_ppc64el.deb ... 203s Unpacking python3-numpy (1:2.3.5+ds-3) ... 203s Selecting previously unselected package python3.13. 203s Preparing to unpack .../06-python3.13_3.13.11-1_ppc64el.deb ... 203s Unpacking python3.13 (3.13.11-1) ... 203s Selecting previously unselected package m4. 203s Preparing to unpack .../07-m4_1.4.20-2_ppc64el.deb ... 203s Unpacking m4 (1.4.20-2) ... 203s Selecting previously unselected package autoconf. 203s Preparing to unpack .../08-autoconf_2.72-3.1ubuntu1_all.deb ... 203s Unpacking autoconf (2.72-3.1ubuntu1) ... 203s Selecting previously unselected package autotools-dev. 203s Preparing to unpack .../09-autotools-dev_20240727.1_all.deb ... 203s Unpacking autotools-dev (20240727.1) ... 203s Selecting previously unselected package automake. 203s Preparing to unpack .../10-automake_1%3a1.18.1-3build1_all.deb ... 203s Unpacking automake (1:1.18.1-3build1) ... 203s Selecting previously unselected package autopoint. 203s Preparing to unpack .../11-autopoint_0.23.2-1_all.deb ... 203s Unpacking autopoint (0.23.2-1) ... 203s Selecting previously unselected package libisl23:ppc64el. 203s Preparing to unpack .../12-libisl23_0.27-1build1_ppc64el.deb ... 203s Unpacking libisl23:ppc64el (0.27-1build1) ... 203s Selecting previously unselected package libmpc3:ppc64el. 203s Preparing to unpack .../13-libmpc3_1.3.1-2_ppc64el.deb ... 203s Unpacking libmpc3:ppc64el (1.3.1-2) ... 203s Selecting previously unselected package cpp-15-powerpc64le-linux-gnu. 203s Preparing to unpack .../14-cpp-15-powerpc64le-linux-gnu_15.2.0-11ubuntu1_ppc64el.deb ... 203s Unpacking cpp-15-powerpc64le-linux-gnu (15.2.0-11ubuntu1) ... 203s Selecting previously unselected package cpp-15. 203s Preparing to unpack .../15-cpp-15_15.2.0-11ubuntu1_ppc64el.deb ... 203s Unpacking cpp-15 (15.2.0-11ubuntu1) ... 203s Selecting previously unselected package cpp-powerpc64le-linux-gnu. 203s Preparing to unpack .../16-cpp-powerpc64le-linux-gnu_4%3a15.2.0-4ubuntu1_ppc64el.deb ... 203s Unpacking cpp-powerpc64le-linux-gnu (4:15.2.0-4ubuntu1) ... 203s Selecting previously unselected package cpp. 203s Preparing to unpack .../17-cpp_4%3a15.2.0-4ubuntu1_ppc64el.deb ... 203s Unpacking cpp (4:15.2.0-4ubuntu1) ... 203s Selecting previously unselected package libcc1-0:ppc64el. 203s Preparing to unpack .../18-libcc1-0_15.2.0-11ubuntu1_ppc64el.deb ... 203s Unpacking libcc1-0:ppc64el (15.2.0-11ubuntu1) ... 203s Selecting previously unselected package libgomp1:ppc64el. 203s Preparing to unpack .../19-libgomp1_15.2.0-11ubuntu1_ppc64el.deb ... 203s Unpacking libgomp1:ppc64el (15.2.0-11ubuntu1) ... 203s Selecting previously unselected package libitm1:ppc64el. 203s Preparing to unpack .../20-libitm1_15.2.0-11ubuntu1_ppc64el.deb ... 203s Unpacking libitm1:ppc64el (15.2.0-11ubuntu1) ... 203s Selecting previously unselected package libasan8:ppc64el. 203s Preparing to unpack .../21-libasan8_15.2.0-11ubuntu1_ppc64el.deb ... 203s Unpacking libasan8:ppc64el (15.2.0-11ubuntu1) ... 203s Selecting previously unselected package liblsan0:ppc64el. 203s Preparing to unpack .../22-liblsan0_15.2.0-11ubuntu1_ppc64el.deb ... 203s Unpacking liblsan0:ppc64el (15.2.0-11ubuntu1) ... 203s Selecting previously unselected package libtsan2:ppc64el. 203s Preparing to unpack .../23-libtsan2_15.2.0-11ubuntu1_ppc64el.deb ... 203s Unpacking libtsan2:ppc64el (15.2.0-11ubuntu1) ... 203s Selecting previously unselected package libubsan1:ppc64el. 203s Preparing to unpack .../24-libubsan1_15.2.0-11ubuntu1_ppc64el.deb ... 203s Unpacking libubsan1:ppc64el (15.2.0-11ubuntu1) ... 203s Selecting previously unselected package libquadmath0:ppc64el. 203s Preparing to unpack .../25-libquadmath0_15.2.0-11ubuntu1_ppc64el.deb ... 203s Unpacking libquadmath0:ppc64el (15.2.0-11ubuntu1) ... 203s Selecting previously unselected package libgcc-15-dev:ppc64el. 203s Preparing to unpack .../26-libgcc-15-dev_15.2.0-11ubuntu1_ppc64el.deb ... 203s Unpacking libgcc-15-dev:ppc64el (15.2.0-11ubuntu1) ... 203s Selecting previously unselected package gcc-15-powerpc64le-linux-gnu. 203s Preparing to unpack .../27-gcc-15-powerpc64le-linux-gnu_15.2.0-11ubuntu1_ppc64el.deb ... 203s Unpacking gcc-15-powerpc64le-linux-gnu (15.2.0-11ubuntu1) ... 203s Selecting previously unselected package gcc-15. 203s Preparing to unpack .../28-gcc-15_15.2.0-11ubuntu1_ppc64el.deb ... 203s Unpacking gcc-15 (15.2.0-11ubuntu1) ... 203s Selecting previously unselected package gcc-powerpc64le-linux-gnu. 203s Preparing to unpack .../29-gcc-powerpc64le-linux-gnu_4%3a15.2.0-4ubuntu1_ppc64el.deb ... 203s Unpacking gcc-powerpc64le-linux-gnu (4:15.2.0-4ubuntu1) ... 203s Selecting previously unselected package gcc. 203s Preparing to unpack .../30-gcc_4%3a15.2.0-4ubuntu1_ppc64el.deb ... 203s Unpacking gcc (4:15.2.0-4ubuntu1) ... 203s Selecting previously unselected package libstdc++-15-dev:ppc64el. 203s Preparing to unpack .../31-libstdc++-15-dev_15.2.0-11ubuntu1_ppc64el.deb ... 203s Unpacking libstdc++-15-dev:ppc64el (15.2.0-11ubuntu1) ... 203s Selecting previously unselected package g++-15-powerpc64le-linux-gnu. 203s Preparing to unpack .../32-g++-15-powerpc64le-linux-gnu_15.2.0-11ubuntu1_ppc64el.deb ... 203s Unpacking g++-15-powerpc64le-linux-gnu (15.2.0-11ubuntu1) ... 203s Selecting previously unselected package g++-15. 203s Preparing to unpack .../33-g++-15_15.2.0-11ubuntu1_ppc64el.deb ... 203s Unpacking g++-15 (15.2.0-11ubuntu1) ... 203s Selecting previously unselected package g++-powerpc64le-linux-gnu. 203s Preparing to unpack .../34-g++-powerpc64le-linux-gnu_4%3a15.2.0-4ubuntu1_ppc64el.deb ... 203s Unpacking g++-powerpc64le-linux-gnu (4:15.2.0-4ubuntu1) ... 203s Selecting previously unselected package g++. 203s Preparing to unpack .../35-g++_4%3a15.2.0-4ubuntu1_ppc64el.deb ... 203s Unpacking g++ (4:15.2.0-4ubuntu1) ... 203s Selecting previously unselected package build-essential. 203s Preparing to unpack .../36-build-essential_12.12ubuntu2_ppc64el.deb ... 203s Unpacking build-essential (12.12ubuntu2) ... 203s Selecting previously unselected package libdebhelper-perl. 203s Preparing to unpack .../37-libdebhelper-perl_13.28ubuntu1_all.deb ... 203s Unpacking libdebhelper-perl (13.28ubuntu1) ... 203s Selecting previously unselected package libtool. 203s Preparing to unpack .../38-libtool_2.5.4-9_all.deb ... 203s Unpacking libtool (2.5.4-9) ... 203s Selecting previously unselected package dh-autoreconf. 203s Preparing to unpack .../39-dh-autoreconf_21_all.deb ... 203s Unpacking dh-autoreconf (21) ... 203s Selecting previously unselected package libarchive-zip-perl. 203s Preparing to unpack .../40-libarchive-zip-perl_1.68-1_all.deb ... 203s Unpacking libarchive-zip-perl (1.68-1) ... 203s Selecting previously unselected package libfile-stripnondeterminism-perl. 203s Preparing to unpack .../41-libfile-stripnondeterminism-perl_1.15.0-1build1_all.deb ... 203s Unpacking libfile-stripnondeterminism-perl (1.15.0-1build1) ... 203s Selecting previously unselected package dh-strip-nondeterminism. 203s Preparing to unpack .../42-dh-strip-nondeterminism_1.15.0-1build1_all.deb ... 203s Unpacking dh-strip-nondeterminism (1.15.0-1build1) ... 203s Selecting previously unselected package debugedit. 203s Preparing to unpack .../43-debugedit_1%3a5.2-3_ppc64el.deb ... 203s Unpacking debugedit (1:5.2-3) ... 203s Selecting previously unselected package dwz. 203s Preparing to unpack .../44-dwz_0.16-2_ppc64el.deb ... 203s Unpacking dwz (0.16-2) ... 203s Selecting previously unselected package gettext. 203s Preparing to unpack .../45-gettext_0.23.2-1_ppc64el.deb ... 203s Unpacking gettext (0.23.2-1) ... 203s Selecting previously unselected package intltool-debian. 203s Preparing to unpack .../46-intltool-debian_0.35.0+20060710.6build1_all.deb ... 203s Unpacking intltool-debian (0.35.0+20060710.6build1) ... 203s Selecting previously unselected package po-debconf. 203s Preparing to unpack .../47-po-debconf_1.0.22_all.deb ... 203s Unpacking po-debconf (1.0.22) ... 203s Selecting previously unselected package debhelper. 203s Preparing to unpack .../48-debhelper_13.28ubuntu1_all.deb ... 203s Unpacking debhelper (13.28ubuntu1) ... 203s Selecting previously unselected package dh-python. 203s Preparing to unpack .../49-dh-python_7.20251231_all.deb ... 203s Unpacking dh-python (7.20251231) ... 203s Selecting previously unselected package pybuild-plugin-autopkgtest. 203s Preparing to unpack .../50-pybuild-plugin-autopkgtest_7.20251231_all.deb ... 203s Unpacking pybuild-plugin-autopkgtest (7.20251231) ... 203s Selecting previously unselected package python3-astroid. 203s Preparing to unpack .../51-python3-astroid_4.0.2-1ubuntu1_all.deb ... 203s Unpacking python3-astroid (4.0.2-1ubuntu1) ... 203s Selecting previously unselected package python3-isort. 203s Preparing to unpack .../52-python3-isort_7.0.0-1_all.deb ... 203s Unpacking python3-isort (7.0.0-1) ... 203s Selecting previously unselected package python3-mypy-extensions. 203s Preparing to unpack .../53-python3-mypy-extensions_1.1.0-1_all.deb ... 203s Unpacking python3-mypy-extensions (1.1.0-1) ... 203s Selecting previously unselected package python3-logilab-common. 203s Preparing to unpack .../54-python3-logilab-common_2.1.0-1_all.deb ... 203s Unpacking python3-logilab-common (2.1.0-1) ... 203s Selecting previously unselected package python3-dill. 203s Preparing to unpack .../55-python3-dill_0.4.0-1_all.deb ... 203s Unpacking python3-dill (0.4.0-1) ... 203s Selecting previously unselected package python3-mccabe. 203s Preparing to unpack .../56-python3-mccabe_0.7.0-1build1_all.deb ... 203s Unpacking python3-mccabe (0.7.0-1build1) ... 203s Selecting previously unselected package python3-platformdirs. 203s Preparing to unpack .../57-python3-platformdirs_4.5.1-1_all.deb ... 203s Unpacking python3-platformdirs (4.5.1-1) ... 203s Selecting previously unselected package python3-tomlkit. 203s Preparing to unpack .../58-python3-tomlkit_0.13.3-2_all.deb ... 203s Unpacking python3-tomlkit (0.13.3-2) ... 203s Selecting previously unselected package pylint. 203s Preparing to unpack .../59-pylint_4.0.4-1_all.deb ... 203s Unpacking pylint (4.0.4-1) ... 203s Selecting previously unselected package python3-pytz. 203s Preparing to unpack .../60-python3-pytz_2025.2-5_all.deb ... 203s Unpacking python3-pytz (2025.2-5) ... 203s Selecting previously unselected package python3-pandas-lib:ppc64el. 203s Preparing to unpack .../61-python3-pandas-lib_2.3.3+dfsg-3_ppc64el.deb ... 203s Unpacking python3-pandas-lib:ppc64el (2.3.3+dfsg-3) ... 203s Selecting previously unselected package python3-pandas. 203s Preparing to unpack .../62-python3-pandas_2.3.3+dfsg-3_all.deb ... 203s Unpacking python3-pandas (2.3.3+dfsg-3) ... 203s Selecting previously unselected package python3-typechecks. 203s Preparing to unpack .../63-python3-typechecks_0.1.0+ds-4_all.deb ... 203s Unpacking python3-typechecks (0.1.0+ds-4) ... 203s Selecting previously unselected package python3-datacache. 203s Preparing to unpack .../64-python3-datacache_1.4.1-2_all.deb ... 203s Unpacking python3-datacache (1.4.1-2) ... 203s Selecting previously unselected package python3-gtfparse. 203s Preparing to unpack .../65-python3-gtfparse_1.3.0+ds-2_all.deb ... 203s Unpacking python3-gtfparse (1.3.0+ds-2) ... 203s Selecting previously unselected package python3-memoized-property. 203s Preparing to unpack .../66-python3-memoized-property_1.0.3-2build1_all.deb ... 203s Unpacking python3-memoized-property (1.0.3-2build1) ... 203s Selecting previously unselected package python3-serializable. 203s Preparing to unpack .../67-python3-serializable_0.4.1+ds-2_all.deb ... 203s Unpacking python3-serializable (0.4.1+ds-2) ... 203s Selecting previously unselected package pyensembl. 203s Preparing to unpack .../68-pyensembl_2.3.13-2_all.deb ... 203s Unpacking pyensembl (2.3.13-2) ... 203s Selecting previously unselected package python3-all. 203s Preparing to unpack .../69-python3-all_3.14.2-1_ppc64el.deb ... 203s Unpacking python3-all (3.14.2-1) ... 203s Selecting previously unselected package python3-iniconfig. 203s Preparing to unpack .../70-python3-iniconfig_2.1.0-2_all.deb ... 203s Unpacking python3-iniconfig (2.1.0-2) ... 203s Selecting previously unselected package python3-pluggy. 203s Preparing to unpack .../71-python3-pluggy_1.6.0-2_all.deb ... 203s Unpacking python3-pluggy (1.6.0-2) ... 203s Selecting previously unselected package python3-pytest. 203s Preparing to unpack .../72-python3-pytest_9.0.2-2_all.deb ... 203s Unpacking python3-pytest (9.0.2-2) ... 203s Setting up dh-python (7.20251231) ... 203s Setting up python3-iniconfig (2.1.0-2) ... 203s Setting up python3-typechecks (0.1.0+ds-4) ... 203s Setting up python3-memoized-property (1.0.3-2build1) ... 203s Setting up libarchive-zip-perl (1.68-1) ... 203s Setting up python3-mypy-extensions (1.1.0-1) ... 203s Setting up libdebhelper-perl (13.28ubuntu1) ... 203s Setting up m4 (1.4.20-2) ... 203s Setting up python3-pytz (2025.2-5) ... 204s Setting up python3-serializable (0.4.1+ds-2) ... 204s Setting up libgomp1:ppc64el (15.2.0-11ubuntu1) ... 204s Setting up python3-platformdirs (4.5.1-1) ... 204s Setting up autotools-dev (20240727.1) ... 204s Setting up libblas3:ppc64el (3.12.1-7ubuntu1) ... 204s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 204s Setting up python3-dill (0.4.0-1) ... 204s Setting up libquadmath0:ppc64el (15.2.0-11ubuntu1) ... 204s Setting up libmpc3:ppc64el (1.3.1-2) ... 204s Setting up python3-numpy-dev:ppc64el (1:2.3.5+ds-3) ... 204s Setting up autopoint (0.23.2-1) ... 204s Setting up libgfortran5:ppc64el (15.2.0-11ubuntu1) ... 204s Setting up autoconf (2.72-3.1ubuntu1) ... 204s Setting up python3-isort (7.0.0-1) ... 205s Setting up python3-pluggy (1.6.0-2) ... 205s Setting up libubsan1:ppc64el (15.2.0-11ubuntu1) ... 205s Setting up dwz (0.16-2) ... 205s Setting up python3-astroid (4.0.2-1ubuntu1) ... 205s Setting up libasan8:ppc64el (15.2.0-11ubuntu1) ... 205s Setting up debugedit (1:5.2-3) ... 205s Setting up python3.13-minimal (3.13.11-1) ... 206s Setting up python3-mccabe (0.7.0-1build1) ... 207s Setting up libtsan2:ppc64el (15.2.0-11ubuntu1) ... 207s Setting up libisl23:ppc64el (0.27-1build1) ... 207s Setting up python3-tomlkit (0.13.3-2) ... 207s Setting up libcc1-0:ppc64el (15.2.0-11ubuntu1) ... 207s Setting up liblsan0:ppc64el (15.2.0-11ubuntu1) ... 207s Setting up libitm1:ppc64el (15.2.0-11ubuntu1) ... 207s Setting up automake (1:1.18.1-3build1) ... 207s update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode 207s Setting up libfile-stripnondeterminism-perl (1.15.0-1build1) ... 207s Setting up liblapack3:ppc64el (3.12.1-7ubuntu1) ... 207s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 207s Setting up gettext (0.23.2-1) ... 207s Setting up libgcc-15-dev:ppc64el (15.2.0-11ubuntu1) ... 207s Setting up python3-logilab-common (2.1.0-1) ... 207s Setting up python3.13 (3.13.11-1) ... 209s Setting up python3-pytest (9.0.2-2) ... 209s Setting up python3-all (3.14.2-1) ... 209s Setting up intltool-debian (0.35.0+20060710.6build1) ... 209s Setting up cpp-15-powerpc64le-linux-gnu (15.2.0-11ubuntu1) ... 209s Setting up libstdc++-15-dev:ppc64el (15.2.0-11ubuntu1) ... 209s Setting up python3-numpy (1:2.3.5+ds-3) ... 213s Setting up dh-strip-nondeterminism (1.15.0-1build1) ... 213s Setting up cpp-15 (15.2.0-11ubuntu1) ... 213s Setting up pylint (4.0.4-1) ... 214s Setting up cpp-powerpc64le-linux-gnu (4:15.2.0-4ubuntu1) ... 214s Setting up gcc-15-powerpc64le-linux-gnu (15.2.0-11ubuntu1) ... 214s Setting up po-debconf (1.0.22) ... 214s Setting up python3-pandas-lib:ppc64el (2.3.3+dfsg-3) ... 214s Setting up gcc-15 (15.2.0-11ubuntu1) ... 214s Setting up python3-pandas (2.3.3+dfsg-3) ... 223s Setting up gcc-powerpc64le-linux-gnu (4:15.2.0-4ubuntu1) ... 223s Setting up cpp (4:15.2.0-4ubuntu1) ... 223s Setting up g++-15-powerpc64le-linux-gnu (15.2.0-11ubuntu1) ... 223s Setting up python3-datacache (1.4.1-2) ... 223s Setting up libtool (2.5.4-9) ... 223s Setting up python3-gtfparse (1.3.0+ds-2) ... 223s Setting up gcc (4:15.2.0-4ubuntu1) ... 223s Setting up dh-autoreconf (21) ... 223s Setting up pyensembl (2.3.13-2) ... 223s Setting up g++-15 (15.2.0-11ubuntu1) ... 223s Setting up g++-powerpc64le-linux-gnu (4:15.2.0-4ubuntu1) ... 223s Setting up debhelper (13.28ubuntu1) ... 223s Setting up g++ (4:15.2.0-4ubuntu1) ... 223s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 223s Setting up build-essential (12.12ubuntu2) ... 223s Setting up pybuild-plugin-autopkgtest (7.20251231) ... 223s Processing triggers for man-db (2.13.1-1) ... 225s Processing triggers for install-info (7.2-5) ... 225s Processing triggers for libc-bin (2.42-2ubuntu4) ... 226s Processing triggers for systemd (259-1ubuntu2) ... 227s autopkgtest [19:42:27]: test pybuild-autopkgtest: pybuild-autopkgtest 227s autopkgtest [19:42:27]: test pybuild-autopkgtest: [----------------------- 228s pybuild-autopkgtest 228s I: pybuild base:384: cd /tmp/autopkgtest.mL00jc/autopkgtest_tmp/build; python3.13 -m pytest -v -k 'not test_download_cache.py and not test_gene_ids.py and not test_gene_names.py and not test_gene_objects.py and not test_id_length.py and not test_search.py and not test_serialization.py and not test_transcript_ids.py and not test_transcript_objects.py and not test_contigs.py and not test_exon_id.py and not test_exon_object.py and not test_string_representation.py and not test_timings.py and not test_transcript_sequences.py and not test_transcript_support_level.py' 228s ============================= test session starts ============================== 228s platform linux -- Python 3.13.11, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3.13 228s cachedir: .pytest_cache 228s rootdir: /tmp/autopkgtest.mL00jc/autopkgtest_tmp/build 228s plugins: typeguard-4.4.4 230s collecting ... collected 126 items / 98 deselected / 28 selected 230s 230s tests/test_ensembl_object_properties.py::test_human_reference_name PASSED [ 3%] 230s tests/test_locus.py::test_normalize_chromosome PASSED [ 7%] 230s tests/test_locus.py::test_locus_overlaps PASSED [ 10%] 230s tests/test_locus.py::test_locus_contains PASSED [ 14%] 230s tests/test_locus.py::test_position_offset PASSED [ 17%] 230s tests/test_locus.py::test_range_offset PASSED [ 21%] 230s tests/test_locus.py::test_locus_distance PASSED [ 25%] 230s tests/test_missing_genome_sources.py::test_transcript_fasta_only PASSED [ 28%] 230s tests/test_missing_genome_sources.py::test_protein_fasta_only PASSED [ 32%] 230s tests/test_missing_genome_sources.py::test_gtf_only PASSED [ 35%] 230s tests/test_missing_genome_sources.py::test_gtf_transcript_only PASSED [ 39%] 230s tests/test_missing_genome_sources.py::test_gtf_protein_only PASSED [ 42%] 230s tests/test_mouse.py::test_mouse_ENSMUSG00000017167 PASSED [ 46%] 230s tests/test_release_versions.py::test_version_too_old_1 PASSED [ 50%] 230s tests/test_release_versions.py::test_version_too_old_47 PASSED [ 53%] 230s tests/test_release_versions.py::test_version_is_not_numeric PASSED [ 57%] 230s tests/test_release_versions.py::test_version_is_none PASSED [ 60%] 230s tests/test_release_versions.py::test_max_ensembl_release PASSED [ 64%] 230s tests/test_release_versions.py::test_int_version PASSED [ 67%] 230s tests/test_release_versions.py::test_str_version PASSED [ 71%] 230s tests/test_sequence_data.py::test_sequence_type PASSED [ 75%] 230s tests/test_sequence_data.py::test_missing_sequence PASSED [ 78%] 230s tests/test_sequence_data.py::test_clear_cache PASSED [ 82%] 230s tests/test_shell.py::test_genome_selection_grch38 PASSED [ 85%] 230s tests/test_ucsc_gtf.py::test_ucsc_gencode_gtf PASSED [ 89%] 230s tests/test_ucsc_gtf.py::test_ucsc_gencode_genome PASSED [ 92%] 230s tests/test_ucsc_gtf.py::test_ucsc_refseq_gtf PASSED [ 96%] 230s tests/test_ucsc_gtf.py::test_ucsc_refseq_genome PASSED [100%] 230s 230s =============================== warnings summary =============================== 230s ../../../../usr/lib/python3/dist-packages/pyensembl/shell.py:43 230s /usr/lib/python3/dist-packages/pyensembl/shell.py:43: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 230s import pkg_resources 230s 230s ../../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:3147 230s /usr/lib/python3/dist-packages/pkg_resources/__init__.py:3147: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('logilab')`. 230s Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages 230s declare_namespace(pkg) 230s 230s ../../../../usr/lib/python3/dist-packages/pyensembl/shell.py:74 230s /usr/lib/python3/dist-packages/pyensembl/shell.py:74: DeprecationWarning: Nesting argument groups is deprecated. 230s release_group = root_group.add_argument_group() 230s 230s ../../../../usr/lib/python3/dist-packages/pyensembl/shell.py:96 230s /usr/lib/python3/dist-packages/pyensembl/shell.py:96: DeprecationWarning: Nesting argument groups is deprecated. 230s path_group = root_group.add_argument_group() 230s 230s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 230s ================ 28 passed, 98 deselected, 4 warnings in 1.79s ================= 230s I: pybuild base:384: cd /tmp/autopkgtest.mL00jc/autopkgtest_tmp/build; python3.14 -m pytest -v -k 'not test_download_cache.py and not test_gene_ids.py and not test_gene_names.py and not test_gene_objects.py and not test_id_length.py and not test_search.py and not test_serialization.py and not test_transcript_ids.py and not test_transcript_objects.py and not test_contigs.py and not test_exon_id.py and not test_exon_object.py and not test_string_representation.py and not test_timings.py and not test_transcript_sequences.py and not test_transcript_support_level.py' 231s ============================= test session starts ============================== 231s platform linux -- Python 3.14.2, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3.14 231s cachedir: .pytest_cache 231s rootdir: /tmp/autopkgtest.mL00jc/autopkgtest_tmp/build 231s plugins: typeguard-4.4.4 232s collecting ... collected 125 items / 1 error / 98 deselected / 27 selected 232s 232s ==================================== ERRORS ==================================== 232s _____________________ ERROR collecting tests/test_shell.py _____________________ 232s tests/test_shell.py:1: in 232s from pyensembl.shell import parser, all_combinations_of_ensembl_genomes 232s /usr/lib/python3/dist-packages/pyensembl/shell.py:74: in 232s release_group = root_group.add_argument_group() 232s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 232s /usr/lib/python3.14/argparse.py:1805: in add_argument_group 232s raise ValueError('argument groups cannot be nested') 232s E ValueError: argument groups cannot be nested 232s =============================== warnings summary =============================== 232s ../../../../usr/lib/python3/dist-packages/pyensembl/shell.py:43 232s /usr/lib/python3/dist-packages/pyensembl/shell.py:43: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 232s import pkg_resources 232s 232s ../../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:3147 232s /usr/lib/python3/dist-packages/pkg_resources/__init__.py:3147: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('logilab')`. 232s Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages 232s declare_namespace(pkg) 232s 232s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 232s =========================== short test summary info ============================ 232s ERROR tests/test_shell.py - ValueError: argument groups cannot be nested 232s !!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!! 232s ================= 98 deselected, 2 warnings, 1 error in 1.13s ================== 232s E: pybuild pybuild:483: test: plugin distutils failed with: exit code=2: cd /tmp/autopkgtest.mL00jc/autopkgtest_tmp/build; python3.14 -m pytest -v -k 'not test_download_cache.py and not test_gene_ids.py and not test_gene_names.py and not test_gene_objects.py and not test_id_length.py and not test_search.py and not test_serialization.py and not test_transcript_ids.py and not test_transcript_objects.py and not test_contigs.py and not test_exon_id.py and not test_exon_object.py and not test_string_representation.py and not test_timings.py and not test_transcript_sequences.py and not test_transcript_support_level.py' 232s pybuild-autopkgtest: error: pybuild --autopkgtest --test-pytest -i python{version} -p "3.13 3.14" returned exit code 13 232s make: *** [/tmp/_eqHWQ20SZ/run:4: pybuild-autopkgtest] Error 25 232s pybuild-autopkgtest: error: /tmp/_eqHWQ20SZ/run pybuild-autopkgtest returned exit code 2 232s autopkgtest [19:42:32]: test pybuild-autopkgtest: -----------------------] 233s pybuild-autopkgtest FAIL non-zero exit status 25 233s autopkgtest [19:42:33]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 233s autopkgtest [19:42:33]: @@@@@@@@@@@@@@@@@@@@ summary 233s run-unit-test FAIL non-zero exit status 2 233s pybuild-autopkgtest FAIL non-zero exit status 25