1s autopkgtest [18:02:15]: starting date and time: 2026-02-05 18:02:15+0000 1s autopkgtest [18:02:15]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 1s autopkgtest [18:02:15]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.6loi95sy/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:tqdm --apt-upgrade pycoqc --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=tqdm/4.67.3-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-ppc64el-37.secgroup --name adt-resolute-ppc64el-pycoqc-20260205-180214-juju-7f2275-prod-proposed-migration-environment-2-a7356317-39cb-4dd5-b4e1-b88dfcee9638 --image adt/ubuntu-resolute-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 6s Creating nova instance adt-resolute-ppc64el-pycoqc-20260205-180214-juju-7f2275-prod-proposed-migration-environment-2-a7356317-39cb-4dd5-b4e1-b88dfcee9638 from image adt/ubuntu-resolute-ppc64el-server-20260205.img (UUID f866c950-0b62-4023-bac6-0f13279e15ed)... 61s autopkgtest [18:03:15]: testbed dpkg architecture: ppc64el 61s autopkgtest [18:03:15]: testbed apt version: 3.1.14 61s autopkgtest [18:03:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 61s autopkgtest [18:03:15]: testbed release detected to be: None 62s autopkgtest [18:03:16]: updating testbed package index (apt update) 62s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 63s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 63s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 63s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 63s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 63s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [36.0 kB] 63s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1686 kB] 63s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [230 kB] 63s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el Packages [264 kB] 63s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el Packages [1465 kB] 63s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse ppc64el Packages [22.5 kB] 63s Fetched 3833 kB in 1s (3883 kB/s) 64s Reading package lists... 65s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 65s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 65s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 65s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 66s Reading package lists... 66s Reading package lists... 66s Building dependency tree... 66s Reading state information... 66s Calculating upgrade... 66s The following packages will be upgraded: 66s pollinate python3-referencing sed 66s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 66s Need to get 248 kB of archives. 66s After this operation, 0 B of additional disk space will be used. 66s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el sed ppc64el 4.9-2build3 [211 kB] 66s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el pollinate all 4.33-4ubuntu5 [14.0 kB] 66s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 66s dpkg-preconfigure: unable to re-open stdin: No such file or directory 66s Fetched 248 kB in 0s (13.0 MB/s) 67s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 67s Preparing to unpack .../sed_4.9-2build3_ppc64el.deb ... 67s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 67s Setting up sed (4.9-2build3) ... 67s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 67s Preparing to unpack .../pollinate_4.33-4ubuntu5_all.deb ... 67s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ... 67s Preparing to unpack .../python3-referencing_0.36.2-1ubuntu2_all.deb ... 67s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ... 68s Setting up pollinate (4.33-4ubuntu5) ... 78s Setting up python3-referencing (0.36.2-1ubuntu2) ... 78s Processing triggers for install-info (7.2-5) ... 78s Processing triggers for man-db (2.13.1-1) ... 79s autopkgtest [18:03:33]: upgrading testbed (apt dist-upgrade and autopurge) 79s Reading package lists... 80s Building dependency tree... 80s Reading state information... 80s Calculating upgrade... 80s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 80s Reading package lists... 80s Building dependency tree... 80s Reading state information... 80s Solving dependencies... 80s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 80s autopkgtest [18:03:34]: rebooting testbed after setup commands that affected boot 119s autopkgtest [18:04:13]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:45:54 UTC 2026 121s autopkgtest [18:04:15]: @@@@@@@@@@@@@@@@@@@@ apt-source pycoqc 123s Get:1 http://ftpmaster.internal/ubuntu resolute/universe pycoqc 2.5.2+dfsg-4 (dsc) [2027 B] 123s Get:2 http://ftpmaster.internal/ubuntu resolute/universe pycoqc 2.5.2+dfsg-4 (tar) [41.6 MB] 123s Get:3 http://ftpmaster.internal/ubuntu resolute/universe pycoqc 2.5.2+dfsg-4 (diff) [6840 B] 124s gpgv: Signature made Sat Jan 18 02:09:23 2025 UTC 124s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 124s gpgv: issuer "tchet@debian.org" 124s gpgv: Can't check signature: No public key 124s dpkg-source: warning: cannot verify inline signature for ./pycoqc_2.5.2+dfsg-4.dsc: no acceptable signature found 126s autopkgtest [18:04:20]: testing package pycoqc version 2.5.2+dfsg-4 126s autopkgtest [18:04:20]: build not needed 130s autopkgtest [18:04:24]: test run-unit-test: preparing testbed 130s Reading package lists... 131s Building dependency tree... 131s Reading state information... 131s Solving dependencies... 131s The following NEW packages will be installed: 131s libblas3 libdeflate0 libgfortran5 libhdf5-310 libhdf5-hl-310 libhts3t64 131s libhtscodecs2 liblapack3 liblzf1 libqhull-r8.0 libsz2 pycoqc 131s python3-decorator python3-fastjsonschema python3-h5py python3-h5py-serial 131s python3-jupyter-core python3-nbformat python3-numpy python3-numpy-dev 131s python3-pandas python3-pandas-lib python3-platformdirs python3-plotly 131s python3-pysam python3-pytz python3-scipy python3-tenacity python3-tqdm 131s python3-traitlets 131s 0 upgraded, 30 newly installed, 0 to remove and 0 not upgraded. 131s Need to get 53.2 MB of archives. 131s After this operation, 377 MB of additional disk space will be used. 131s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy-dev ppc64el 1:2.3.5+ds-3 [153 kB] 131s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el libblas3 ppc64el 3.12.1-7ubuntu1 [291 kB] 131s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgfortran5 ppc64el 15.2.0-12ubuntu1 [620 kB] 131s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblapack3 ppc64el 3.12.1-7ubuntu1 [2960 kB] 131s Get:5 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy ppc64el 1:2.3.5+ds-3 [5722 kB] 131s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el libdeflate0 ppc64el 1.23-2 [63.3 kB] 131s Get:7 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libsz2 ppc64el 1.1.5-1 [25.3 kB] 131s Get:8 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libhdf5-310 ppc64el 1.14.6+repack-2 [1545 kB] 131s Get:9 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libhdf5-hl-310 ppc64el 1.14.6+repack-2 [76.3 kB] 131s Get:10 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libhtscodecs2 ppc64el 1.6.1-2build1 [119 kB] 131s Get:11 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libhts3t64 ppc64el 1.22.1+ds2-1 [617 kB] 131s Get:12 http://ftpmaster.internal/ubuntu resolute/universe ppc64el liblzf1 ppc64el 3.6-4build1 [8064 B] 131s Get:13 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libqhull-r8.0 ppc64el 2020.2-8 [227 kB] 131s Get:14 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-h5py-serial ppc64el 3.15.1-4 [1668 kB] 131s Get:15 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-h5py all 3.15.1-4 [11.3 kB] 131s Get:16 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pytz all 2025.2-5 [32.4 kB] 131s Get:17 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pandas-lib ppc64el 2.3.3+dfsg-3 [7213 kB] 131s Get:18 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pandas all 2.3.3+dfsg-3 [2948 kB] 131s Get:19 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-decorator all 5.2.1-2 [28.1 kB] 131s Get:20 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-fastjsonschema all 2.21.1-1 [20.4 kB] 131s Get:21 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-platformdirs all 4.5.1-1 [17.1 kB] 131s Get:22 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-traitlets all 5.14.3+really5.14.3-2 [71.7 kB] 131s Get:23 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-jupyter-core all 5.9.1-1 [28.9 kB] 131s Get:24 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-nbformat all 5.10.4-1 [39.2 kB] 131s Get:25 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB] 131s Get:26 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-plotly all 5.20.0+dfsg-1.1 [2766 kB] 132s Get:27 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pysam ppc64el 0.23.3+ds-2 [5011 kB] 132s Get:28 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-scipy ppc64el 1.16.3-4 [20.7 MB] 132s Get:29 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el python3-tqdm all 4.67.3-1 [93.3 kB] 132s Get:30 http://ftpmaster.internal/ubuntu resolute/universe ppc64el pycoqc all 2.5.2+dfsg-4 [36.4 kB] 133s Fetched 53.2 MB in 1s (39.0 MB/s) 133s Selecting previously unselected package python3-numpy-dev:ppc64el. 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 133s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.5+ds-3_ppc64el.deb ... 133s Unpacking python3-numpy-dev:ppc64el (1:2.3.5+ds-3) ... 133s Selecting previously unselected package libblas3:ppc64el. 133s Preparing to unpack .../01-libblas3_3.12.1-7ubuntu1_ppc64el.deb ... 133s Unpacking libblas3:ppc64el (3.12.1-7ubuntu1) ... 133s Selecting previously unselected package libgfortran5:ppc64el. 133s Preparing to unpack .../02-libgfortran5_15.2.0-12ubuntu1_ppc64el.deb ... 133s Unpacking libgfortran5:ppc64el (15.2.0-12ubuntu1) ... 133s Selecting previously unselected package liblapack3:ppc64el. 133s Preparing to unpack .../03-liblapack3_3.12.1-7ubuntu1_ppc64el.deb ... 133s Unpacking liblapack3:ppc64el (3.12.1-7ubuntu1) ... 134s Selecting previously unselected package python3-numpy. 134s Preparing to unpack .../04-python3-numpy_1%3a2.3.5+ds-3_ppc64el.deb ... 134s Unpacking python3-numpy (1:2.3.5+ds-3) ... 134s Selecting previously unselected package libdeflate0:ppc64el. 134s Preparing to unpack .../05-libdeflate0_1.23-2_ppc64el.deb ... 134s Unpacking libdeflate0:ppc64el (1.23-2) ... 134s Selecting previously unselected package libsz2:ppc64el. 134s Preparing to unpack .../06-libsz2_1.1.5-1_ppc64el.deb ... 134s Unpacking libsz2:ppc64el (1.1.5-1) ... 134s Selecting previously unselected package libhdf5-310:ppc64el. 134s Preparing to unpack .../07-libhdf5-310_1.14.6+repack-2_ppc64el.deb ... 134s Unpacking libhdf5-310:ppc64el (1.14.6+repack-2) ... 134s Selecting previously unselected package libhdf5-hl-310:ppc64el. 134s Preparing to unpack .../08-libhdf5-hl-310_1.14.6+repack-2_ppc64el.deb ... 134s Unpacking libhdf5-hl-310:ppc64el (1.14.6+repack-2) ... 134s Selecting previously unselected package libhtscodecs2:ppc64el. 134s Preparing to unpack .../09-libhtscodecs2_1.6.1-2build1_ppc64el.deb ... 134s Unpacking libhtscodecs2:ppc64el (1.6.1-2build1) ... 134s Selecting previously unselected package libhts3t64:ppc64el. 134s Preparing to unpack .../10-libhts3t64_1.22.1+ds2-1_ppc64el.deb ... 134s Unpacking libhts3t64:ppc64el (1.22.1+ds2-1) ... 134s Selecting previously unselected package liblzf1:ppc64el. 134s Preparing to unpack .../11-liblzf1_3.6-4build1_ppc64el.deb ... 134s Unpacking liblzf1:ppc64el (3.6-4build1) ... 134s Selecting previously unselected package libqhull-r8.0:ppc64el. 134s Preparing to unpack .../12-libqhull-r8.0_2020.2-8_ppc64el.deb ... 134s Unpacking libqhull-r8.0:ppc64el (2020.2-8) ... 134s Selecting previously unselected package python3-h5py-serial. 134s Preparing to unpack .../13-python3-h5py-serial_3.15.1-4_ppc64el.deb ... 134s Unpacking python3-h5py-serial (3.15.1-4) ... 134s Selecting previously unselected package python3-h5py. 134s Preparing to unpack .../14-python3-h5py_3.15.1-4_all.deb ... 134s Unpacking python3-h5py (3.15.1-4) ... 134s Selecting previously unselected package python3-pytz. 134s Preparing to unpack .../15-python3-pytz_2025.2-5_all.deb ... 134s Unpacking python3-pytz (2025.2-5) ... 134s Selecting previously unselected package python3-pandas-lib:ppc64el. 134s Preparing to unpack .../16-python3-pandas-lib_2.3.3+dfsg-3_ppc64el.deb ... 134s Unpacking python3-pandas-lib:ppc64el (2.3.3+dfsg-3) ... 135s Selecting previously unselected package python3-pandas. 135s Preparing to unpack .../17-python3-pandas_2.3.3+dfsg-3_all.deb ... 135s Unpacking python3-pandas (2.3.3+dfsg-3) ... 135s Selecting previously unselected package python3-decorator. 135s Preparing to unpack .../18-python3-decorator_5.2.1-2_all.deb ... 135s Unpacking python3-decorator (5.2.1-2) ... 135s Selecting previously unselected package python3-fastjsonschema. 135s Preparing to unpack .../19-python3-fastjsonschema_2.21.1-1_all.deb ... 135s Unpacking python3-fastjsonschema (2.21.1-1) ... 135s Selecting previously unselected package python3-platformdirs. 135s Preparing to unpack .../20-python3-platformdirs_4.5.1-1_all.deb ... 135s Unpacking python3-platformdirs (4.5.1-1) ... 135s Selecting previously unselected package python3-traitlets. 135s Preparing to unpack .../21-python3-traitlets_5.14.3+really5.14.3-2_all.deb ... 135s Unpacking python3-traitlets (5.14.3+really5.14.3-2) ... 135s Selecting previously unselected package python3-jupyter-core. 135s Preparing to unpack .../22-python3-jupyter-core_5.9.1-1_all.deb ... 135s Unpacking python3-jupyter-core (5.9.1-1) ... 135s Selecting previously unselected package python3-nbformat. 135s Preparing to unpack .../23-python3-nbformat_5.10.4-1_all.deb ... 135s Unpacking python3-nbformat (5.10.4-1) ... 135s Selecting previously unselected package python3-tenacity. 135s Preparing to unpack .../24-python3-tenacity_9.0.0-0ubuntu1_all.deb ... 135s Unpacking python3-tenacity (9.0.0-0ubuntu1) ... 135s Selecting previously unselected package python3-plotly. 135s Preparing to unpack .../25-python3-plotly_5.20.0+dfsg-1.1_all.deb ... 135s Unpacking python3-plotly (5.20.0+dfsg-1.1) ... 136s Selecting previously unselected package python3-pysam. 136s Preparing to unpack .../26-python3-pysam_0.23.3+ds-2_ppc64el.deb ... 136s Unpacking python3-pysam (0.23.3+ds-2) ... 137s Selecting previously unselected package python3-scipy. 137s Preparing to unpack .../27-python3-scipy_1.16.3-4_ppc64el.deb ... 137s Unpacking python3-scipy (1.16.3-4) ... 137s Selecting previously unselected package python3-tqdm. 137s Preparing to unpack .../28-python3-tqdm_4.67.3-1_all.deb ... 137s Unpacking python3-tqdm (4.67.3-1) ... 137s Selecting previously unselected package pycoqc. 137s Preparing to unpack .../29-pycoqc_2.5.2+dfsg-4_all.deb ... 137s Unpacking pycoqc (2.5.2+dfsg-4) ... 137s Setting up libhtscodecs2:ppc64el (1.6.1-2build1) ... 137s Setting up python3-tenacity (9.0.0-0ubuntu1) ... 137s Setting up python3-tqdm (4.67.3-1) ... 138s Setting up libdeflate0:ppc64el (1.23-2) ... 138s Setting up libqhull-r8.0:ppc64el (2020.2-8) ... 138s Setting up python3-pytz (2025.2-5) ... 138s Setting up python3-platformdirs (4.5.1-1) ... 138s Setting up python3-decorator (5.2.1-2) ... 138s Setting up libblas3:ppc64el (3.12.1-7ubuntu1) ... 138s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 138s Setting up liblzf1:ppc64el (3.6-4build1) ... 138s Setting up python3-numpy-dev:ppc64el (1:2.3.5+ds-3) ... 138s Setting up libgfortran5:ppc64el (15.2.0-12ubuntu1) ... 138s Setting up python3-fastjsonschema (2.21.1-1) ... 138s Setting up python3-traitlets (5.14.3+really5.14.3-2) ... 138s Setting up libhts3t64:ppc64el (1.22.1+ds2-1) ... 138s Setting up python3-jupyter-core (5.9.1-1) ... 138s Setting up libsz2:ppc64el (1.1.5-1) ... 138s Setting up liblapack3:ppc64el (3.12.1-7ubuntu1) ... 138s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 138s Setting up python3-pysam (0.23.3+ds-2) ... 139s Setting up python3-nbformat (5.10.4-1) ... 139s Setting up python3-plotly (5.20.0+dfsg-1.1) ... 145s Setting up python3-numpy (1:2.3.5+ds-3) ... 147s Setting up libhdf5-310:ppc64el (1.14.6+repack-2) ... 147s Setting up libhdf5-hl-310:ppc64el (1.14.6+repack-2) ... 147s Setting up python3-scipy (1.16.3-4) ... 151s Setting up python3-pandas-lib:ppc64el (2.3.3+dfsg-3) ... 151s Setting up python3-h5py-serial (3.15.1-4) ... 151s Setting up python3-pandas (2.3.3+dfsg-3) ... 156s Setting up python3-h5py (3.15.1-4) ... 156s Setting up pycoqc (2.5.2+dfsg-4) ... 156s Processing triggers for libc-bin (2.42-2ubuntu4) ... 157s Processing triggers for man-db (2.13.1-1) ... 159s autopkgtest [18:04:53]: test run-unit-test: [----------------------- 160s Test 1 161s Checking arguments values 161s Check input data files 161s Parse data files 161s Merge data 161s Cleaning data 161s Loading plotting interface 162s PASS 162s 162s Test 2 162s Checking arguments values 162s Check input data files 162s Parse data files 162s Merge data 162s Cleaning data 162s Loading plotting interface 163s PASS 163s 163s Test 3 164s Checking arguments values 164s Check input data files 164s Parse data files 164s Merge data 164s Cleaning data 164s Loading plotting interface 164s PASS 164s 164s Test 4 165s Checking arguments values 165s Check input data files 165s Parse data files 165s Merge data 165s Cleaning data 165s Loading plotting interface 166s PASS 166s 166s Test 5 167s Checking arguments values 167s Check input data files 167s Parse data files 167s Merge data 167s Cleaning data 167s Loading plotting interface 168s PASS 168s 168s Test 6 168s PASS 168s 168s Test 7 169s Checking arguments values 169s Check input data files 169s Parse data files 169s Merge data 169s Cleaning data 169s Loading plotting interface 170s PASS 170s 170s Test 8 170s 0 reads [00:00, ? reads/s] 22 reads [00:00, 911.73 reads/s] 170s Total reads: 22 / Average speed: 600.14 reads/s 170s 170s read_id run_id channel start_time sequence_length_template mean_qscore_template calibration_strand_genome_template 170s 61e799eb-5571-4cc4-bbf6-b3929b197459 40ebe55356ada6c830fa793745ef4c498d896c73 103 26 844 8.56 filtered_out 170s 5b7fadd0-c646-4c7b-9800-66ee658a5ca8 40ebe55356ada6c830fa793745ef4c498d896c73 150 37 468 7.608 filtered_out 170s c38cbad9-d91e-4208-9317-832f4e2cc289 40ebe55356ada6c830fa793745ef4c498d896c73 113 30 824 8.693 filtered_out 170s 1f83ee80-ac29-46be-b8bc-9dc9325f1fa7 40ebe55356ada6c830fa793745ef4c498d896c73 382 35 819 7.414 filtered_out 170s 4e21bf07-e2df-42d8-b347-59ef2c0618ea 40ebe55356ada6c830fa793745ef4c498d896c73 290 31 1160 8.741 filtered_out 170s f8325de9-a77e-4616-a4a8-69ecf32e1688 40ebe55356ada6c830fa793745ef4c498d896c73 354 16 568 8.206 filtered_out 170s e6a8e4d0-7b3c-471a-be26-fa7857d12663 40ebe55356ada6c830fa793745ef4c498d896c73 318 15 392 8.304 filtered_out 170s 0ef36fa0-7c3f-47f5-8410-027f50724701 40ebe55356ada6c830fa793745ef4c498d896c73 108 26 915 9.407 filtered_out 170s 08642be5-5cf7-4c4c-8c45-e4d569b9a482 40ebe55356ada6c830fa793745ef4c498d896c73 121 28 450 7.805 filtered_out 170s PASS 170s 170s Test 9 171s Check input data and options 171s Start processing fast5 files 171s 0 reads [00:00, ? reads/s] 22 reads [00:00, 947.31 reads/s] 171s Overall counts valid files: 22 171s 171s fields found mean_qscore_template: 22 171s called_events: 22 171s duration: 22 171s strand_score: 22 171s 171s fields not found 171s Total reads: 22 / Average speed: 674.88 reads/s 171s 171s mean_qscore_template called_events duration strand_score 171s 8.56 5838 87570 -0.0003 171s 8.693 2383 35752 -0.0005 171s 7.608 1615 24233 -0.0007 171s 7.414 3017 45267 -0.0002 171s 8.741 3117 46767 -0.0006 171s 8.206 1649 24747 -0.0009 171s 9.407 2848 42730 -0.0003 171s 8.304 1547 23218 -0.0008 171s 8.119 3181 47720 -0.0004 171s PASS 171s 171s Test 10 172s Check input data and options 172s Start processing fast5 files 172s 0 reads [00:00, ? reads/s] 22 reads [00:00, 853.73 reads/s] 172s Overall counts valid files: 22 172s 172s fields found read_id: 22 172s run_id: 22 172s channel: 22 172s start_time: 22 172s sequence_length_template: 22 172s mean_qscore_template: 22 172s calibration_strand_genome_template: 22 172s 172s fields not found barcode_arrangement: 22 172s 172s Total reads: 22 / Average speed: 615.0 reads/s 172s 172s read_id run_id channel start_time sequence_length_template mean_qscore_template calibration_strand_genome_template path 172s 5b7fadd0-c646-4c7b-9800-66ee658a5ca8 40ebe55356ada6c830fa793745ef4c498d896c73 150 37 468 7.608 filtered_out /tmp/autopkgtest.oHpjy4/autopkgtest_tmp/datafast5/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_150_strand.fast5 172s 61e799eb-5571-4cc4-bbf6-b3929b197459 40ebe55356ada6c830fa793745ef4c498d896c73 103 26 844 8.56 filtered_out /tmp/autopkgtest.oHpjy4/autopkgtest_tmp/datafast5/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_103_strand.fast5 172s 1f83ee80-ac29-46be-b8bc-9dc9325f1fa7 40ebe55356ada6c830fa793745ef4c498d896c73 382 35 819 7.414 filtered_out /tmp/autopkgtest.oHpjy4/autopkgtest_tmp/datafast5/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_382_strand.fast5 172s c38cbad9-d91e-4208-9317-832f4e2cc289 40ebe55356ada6c830fa793745ef4c498d896c73 113 30 824 8.693 filtered_out /tmp/autopkgtest.oHpjy4/autopkgtest_tmp/datafast5/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_113_strand.fast5 172s 4e21bf07-e2df-42d8-b347-59ef2c0618ea 40ebe55356ada6c830fa793745ef4c498d896c73 290 31 1160 8.741 filtered_out /tmp/autopkgtest.oHpjy4/autopkgtest_tmp/datafast5/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_290_strand.fast5 172s f8325de9-a77e-4616-a4a8-69ecf32e1688 40ebe55356ada6c830fa793745ef4c498d896c73 354 16 568 8.206 filtered_out /tmp/autopkgtest.oHpjy4/autopkgtest_tmp/datafast5/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_354_strand.fast5 172s e6a8e4d0-7b3c-471a-be26-fa7857d12663 40ebe55356ada6c830fa793745ef4c498d896c73 318 15 392 8.304 filtered_out /tmp/autopkgtest.oHpjy4/autopkgtest_tmp/datafast5/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_318_strand.fast5 172s 0ef36fa0-7c3f-47f5-8410-027f50724701 40ebe55356ada6c830fa793745ef4c498d896c73 108 26 915 9.407 filtered_out /tmp/autopkgtest.oHpjy4/autopkgtest_tmp/datafast5/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_108_strand.fast5 172s 08642be5-5cf7-4c4c-8c45-e4d569b9a482 40ebe55356ada6c830fa793745ef4c498d896c73 121 28 450 7.805 filtered_out /tmp/autopkgtest.oHpjy4/autopkgtest_tmp/datafast5/20180625_FAH77625_MN23126_sequencing_run_S1_57529_read_10_ch_121_strand.fast5 172s PASS 172s 172s Test 11 173s Import data from sequencing summary file(s) and cleanup 173s Read files and import in a dataframe 173s Check input data files 173s Parse data files 173s Merge data 173s Cleanup missing barcodes values 173s Cleaning up low frequency barcodes 173s Split data per barcode 173s Processing data for Barcode barcode02 173s Processing data for Barcode barcode07 173s Processing data for Barcode barcode08 173s Processing data for Barcode barcode09 173s Processing data for Barcode barcode10 173s Processing data for Barcode barcode11 174s Processing data for Barcode barcode12 174s Processing data for Barcode unclassified 174s Barcode Counts 174s Counts Write 174s barcode02 2 False 174s barcode07 1 False 174s barcode08 30 False 174s barcode09 9945 True 174s barcode10 12644 True 174s barcode11 13594 True 174s barcode12 9813 True 174s unclassified 3971 False 174s PASS 174s 174s Test 12 175s General info 175s package_name: pycoQC 175s package_version: 2.5.2 175s timestamp: 2026-02-05 18:05:08.524899 175s 175s Runtime options 175s summary_file: ['Guppy-basecall-1D-DNA_sequencing_summary.txt'] 175s barcode_file: ['Guppy-basecall-1D-DNA_deepbinner_barcoding_summary.txt'] 175s output_dir: results/ 175s output_unclassified: False 175s min_barcode_percent: 0.1 175s verbose: True 175s quiet: False 175s 175s Import data from sequencing summary file(s) and cleanup 175s Read files and import in a dataframe 175s Check input data files 175s Sequencing summary files found: Guppy-basecall-1D-DNA_sequencing_summary.txt 175s Barcode files found: Guppy-basecall-1D-DNA_deepbinner_barcoding_summary.txt 175s Parse data files 175s Parse summary files 175s 3,999 reads found in initial file 175s Parse barcode files 175s Found valid Deepbinner barcode file 175s 3,775 reads with barcodes assigned 175s Merge data 175s Cleanup missing barcodes values 175s Cleaning up low frequency barcodes 175s Split data per barcode 175s Processing data for Barcode 1 175s Processing data for Barcode 2 175s Processing data for Barcode 3 175s Processing data for Barcode 4 175s Processing data for Barcode 5 175s Processing data for Barcode 6 175s Processing data for Barcode 7 175s Processing data for Barcode 8 175s Processing data for Barcode unclassified 175s Barcode Counts 175s Counts Write 175s 1 534 True 175s 2 206 True 175s 3 562 True 175s 4 579 True 175s 5 590 True 175s 6 655 True 175s 7 271 True 175s 8 378 True 175s unclassified 224 False 175s PASS 175s 175s Check if files really exist 175s PASS 175s 175s autopkgtest [18:05:09]: test run-unit-test: -----------------------] 176s autopkgtest [18:05:10]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 176s run-unit-test PASS 176s autopkgtest [18:05:10]: @@@@@@@@@@@@@@@@@@@@ summary 176s run-unit-test PASS