0s autopkgtest [04:20:37]: starting date and time: 2025-12-06 04:20:37+0000 0s autopkgtest [04:20:37]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [04:20:37]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.7dube734/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade peptidebuilder --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.13.9-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-ppc64el-5.secgroup --name adt-resolute-ppc64el-peptidebuilder-20251206-042037-juju-7f2275-prod-proposed-migration-environment-20-30e53a25-f7c2-4f15-a35d-565575119406 --image adt/ubuntu-resolute-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-ppc64el-peptidebuilder-20251206-042037-juju-7f2275-prod-proposed-migration-environment-20-30e53a25-f7c2-4f15-a35d-565575119406 from image adt/ubuntu-resolute-ppc64el-server-20251205.img (UUID ec8e7418-51bb-4f88-80fc-4d434bdc97c2)... 49s autopkgtest [04:21:26]: testbed dpkg architecture: ppc64el 49s autopkgtest [04:21:26]: testbed apt version: 3.1.12 49s autopkgtest [04:21:26]: @@@@@@@@@@@@@@@@@@@@ test bed setup 49s autopkgtest [04:21:26]: testbed release detected to be: None 50s autopkgtest [04:21:27]: updating testbed package index (apt update) 50s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 50s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 50s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 50s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 50s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.8 kB] 50s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [852 kB] 50s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [139 kB] 50s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el Packages [224 kB] 50s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el Packages [700 kB] 51s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse ppc64el Packages [6648 B] 51s Fetched 2067 kB in 1s (3886 kB/s) 51s Reading package lists... 52s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 52s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 52s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 52s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 53s Reading package lists... 53s Reading package lists... 53s Building dependency tree... 53s Reading state information... 53s Calculating upgrade... 53s The following packages will be upgraded: 53s libnftnl11 libpython3-stdlib lxd-installer python3 python3-attr python3-gdbm 53s python3-minimal 53s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 53s Need to get 212 kB of archives. 53s After this operation, 16.4 kB of additional disk space will be used. 53s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-minimal ppc64el 3.13.9-2 [28.1 kB] 53s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3 ppc64el 3.13.9-2 [23.0 kB] 53s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libpython3-stdlib ppc64el 3.13.9-2 [10.8 kB] 53s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el libnftnl11 ppc64el 1.3.1-1 [80.0 kB] 53s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-gdbm ppc64el 3.13.9-2 [11.0 kB] 53s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el lxd-installer all 14ubuntu0 [5428 B] 53s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-attr all 25.4.0-1 [53.6 kB] 54s dpkg-preconfigure: unable to re-open stdin: No such file or directory 54s Fetched 212 kB in 0s (17.1 MB/s) 54s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81185 files and directories currently installed.) 54s Preparing to unpack .../python3-minimal_3.13.9-2_ppc64el.deb ... 54s Unpacking python3-minimal (3.13.9-2) over (3.13.7-1) ... 54s Setting up python3-minimal (3.13.9-2) ... 55s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81185 files and directories currently installed.) 55s Preparing to unpack .../0-python3_3.13.9-2_ppc64el.deb ... 55s running python pre-rtupdate hooks for python3.13... 55s Unpacking python3 (3.13.9-2) over (3.13.7-1) ... 55s Preparing to unpack .../1-libpython3-stdlib_3.13.9-2_ppc64el.deb ... 55s Unpacking libpython3-stdlib:ppc64el (3.13.9-2) over (3.13.7-1) ... 55s Preparing to unpack .../2-libnftnl11_1.3.1-1_ppc64el.deb ... 55s Unpacking libnftnl11:ppc64el (1.3.1-1) over (1.3.0-1) ... 55s Preparing to unpack .../3-python3-gdbm_3.13.9-2_ppc64el.deb ... 55s Unpacking python3-gdbm (3.13.9-2) over (3.13.9-1) ... 55s Preparing to unpack .../4-lxd-installer_14ubuntu0_all.deb ... 55s Unpacking lxd-installer (14ubuntu0) over (13ubuntu0) ... 55s Preparing to unpack .../5-python3-attr_25.4.0-1_all.deb ... 55s Unpacking python3-attr (25.4.0-1) over (25.3.0-1) ... 55s Setting up python3-gdbm (3.13.9-2) ... 55s Setting up libnftnl11:ppc64el (1.3.1-1) ... 55s Setting up lxd-installer (14ubuntu0) ... 56s Setting up libpython3-stdlib:ppc64el (3.13.9-2) ... 56s Setting up python3 (3.13.9-2) ... 56s running python rtupdate hooks for python3.13... 56s running python post-rtupdate hooks for python3.13... 56s Setting up python3-attr (25.4.0-1) ... 56s Processing triggers for man-db (2.13.1-1) ... 57s Processing triggers for libc-bin (2.42-2ubuntu2) ... 57s autopkgtest [04:21:34]: upgrading testbed (apt dist-upgrade and autopurge) 57s Reading package lists... 58s Building dependency tree... 58s Reading state information... 58s Calculating upgrade... 58s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 58s Reading package lists... 58s Building dependency tree... 58s Reading state information... 58s Solving dependencies... 58s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 58s autopkgtest [04:21:35]: rebooting testbed after setup commands that affected boot 96s autopkgtest [04:22:13]: testbed running kernel: Linux 6.17.0-6-generic #6-Ubuntu SMP PREEMPT_DYNAMIC Tue Oct 7 13:47:32 UTC 2025 99s autopkgtest [04:22:16]: @@@@@@@@@@@@@@@@@@@@ apt-source peptidebuilder 100s Get:1 http://ftpmaster.internal/ubuntu resolute/universe peptidebuilder 1.1.0-3 (dsc) [2239 B] 100s Get:2 http://ftpmaster.internal/ubuntu resolute/universe peptidebuilder 1.1.0-3 (tar) [468 kB] 100s Get:3 http://ftpmaster.internal/ubuntu resolute/universe peptidebuilder 1.1.0-3 (diff) [4016 B] 101s gpgv: Signature made Fri Oct 8 20:54:03 2021 UTC 101s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 101s gpgv: issuer "tille@debian.org" 101s gpgv: Can't check signature: No public key 101s dpkg-source: warning: cannot verify inline signature for ./peptidebuilder_1.1.0-3.dsc: no acceptable signature found 101s autopkgtest [04:22:18]: testing package peptidebuilder version 1.1.0-3 101s autopkgtest [04:22:18]: build not needed 101s autopkgtest [04:22:18]: test run-unit-test: preparing testbed 101s Reading package lists... 101s Building dependency tree... 101s Reading state information... 101s Solving dependencies... 102s The following NEW packages will be installed: 102s fontconfig-config fonts-urw-base35 libblas3 libcairo2 libdeflate0 102s libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3 102s libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 102s liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 102s libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 102s libxrender1 python3-biopython python3-cairo python3-charset-normalizer 102s python3-freetype python3-numpy python3-numpy-dev python3-peptidebuilder 102s python3-pil python3-reportlab python3-rlpycairo sgml-base w3c-sgml-lib 102s x11-common xfonts-encodings xfonts-utils xml-core 102s 0 upgraded, 45 newly installed, 0 to remove and 0 not upgraded. 102s Need to get 29.1 MB of archives. 102s After this operation, 96.2 MB of additional disk space will be used. 102s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy-dev ppc64el 1:2.2.4+ds-1ubuntu1 [153 kB] 102s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el libblas3 ppc64el 3.12.1-7 [291 kB] 102s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgfortran5 ppc64el 15.2.0-9ubuntu1 [620 kB] 102s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblapack3 ppc64el 3.12.1-7 [2960 kB] 103s Get:5 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy ppc64el 1:2.2.4+ds-1ubuntu1 [4887 kB] 104s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build2 [16.1 kB] 104s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el x11-common all 1:7.7+24ubuntu1 [22.4 kB] 104s Get:8 http://ftpmaster.internal/ubuntu resolute/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu3 [576 kB] 104s Get:9 http://ftpmaster.internal/ubuntu resolute/main ppc64el xfonts-utils ppc64el 1:7.7+7 [114 kB] 104s Get:10 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB] 104s Get:11 http://ftpmaster.internal/ubuntu resolute/main ppc64el fontconfig-config ppc64el 2.15.0-2.3ubuntu1 [38.1 kB] 104s Get:12 http://ftpmaster.internal/ubuntu resolute/main ppc64el libfontconfig1 ppc64el 2.15.0-2.3ubuntu1 [188 kB] 104s Get:13 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpixman-1-0 ppc64el 0.46.4-1 [347 kB] 104s Get:14 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-render0 ppc64el 1.17.0-2build1 [17.2 kB] 104s Get:15 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-shm0 ppc64el 1.17.0-2build1 [6078 B] 104s Get:16 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxrender1 ppc64el 1:0.9.12-1 [23.0 kB] 104s Get:17 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcairo2 ppc64el 1.18.4-1build1 [759 kB] 104s Get:18 http://ftpmaster.internal/ubuntu resolute/main ppc64el libdeflate0 ppc64el 1.23-2 [63.3 kB] 104s Get:19 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgomp1 ppc64el 15.2.0-9ubuntu1 [169 kB] 104s Get:20 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 104s Get:21 http://ftpmaster.internal/ubuntu resolute/main ppc64el libharfbuzz0b ppc64el 12.1.0-1 [679 kB] 104s Get:22 http://ftpmaster.internal/ubuntu resolute/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 104s Get:23 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-4ubuntu2 [215 kB] 104s Get:24 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 104s Get:25 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblcms2-2 ppc64el 2.17-1 [246 kB] 104s Get:26 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu1 [298 kB] 104s Get:27 http://ftpmaster.internal/ubuntu resolute/main ppc64el libraqm0 ppc64el 0.10.3-1 [19.6 kB] 104s Get:28 http://ftpmaster.internal/ubuntu resolute/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1 [22.3 kB] 104s Get:29 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB] 104s Get:30 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebp7 ppc64el 1.5.0-0.1 [315 kB] 104s Get:31 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtiff6 ppc64el 4.7.0-3ubuntu3 [307 kB] 104s Get:32 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebpdemux2 ppc64el 1.5.0-0.1 [14.6 kB] 104s Get:33 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebpmux3 ppc64el 1.5.0-0.1 [31.1 kB] 104s Get:34 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-charset-normalizer ppc64el 3.4.4-2 [175 kB] 104s Get:35 http://ftpmaster.internal/ubuntu resolute/main ppc64el libopenjp2-7 ppc64el 2.5.3-2.1 [251 kB] 104s Get:36 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-pil ppc64el 12.0.0-1ubuntu1 [645 kB] 105s Get:37 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-cairo ppc64el 1.27.0-2build1 [150 kB] 105s Get:38 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-freetype all 2.5.1-2 [92.2 kB] 105s Get:39 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-rlpycairo all 0.3.0-4 [9332 B] 105s Get:40 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-reportlab all 4.4.5-1 [1148 kB] 105s Get:41 http://ftpmaster.internal/ubuntu resolute/main ppc64el sgml-base all 1.31+nmu1 [11.0 kB] 105s Get:42 http://ftpmaster.internal/ubuntu resolute/main ppc64el xml-core all 0.19 [20.3 kB] 105s Get:43 http://ftpmaster.internal/ubuntu resolute/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB] 105s Get:44 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-biopython ppc64el 1.86+dfsg-1 [1726 kB] 105s Get:45 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-peptidebuilder all 1.1.0-3 [13.3 kB] 105s Fetched 29.1 MB in 3s (9423 kB/s) 105s Selecting previously unselected package python3-numpy-dev:ppc64el. 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81185 files and directories currently installed.) 105s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_ppc64el.deb ... 105s Unpacking python3-numpy-dev:ppc64el (1:2.2.4+ds-1ubuntu1) ... 105s Selecting previously unselected package libblas3:ppc64el. 105s Preparing to unpack .../01-libblas3_3.12.1-7_ppc64el.deb ... 105s Unpacking libblas3:ppc64el (3.12.1-7) ... 105s Selecting previously unselected package libgfortran5:ppc64el. 105s Preparing to unpack .../02-libgfortran5_15.2.0-9ubuntu1_ppc64el.deb ... 105s Unpacking libgfortran5:ppc64el (15.2.0-9ubuntu1) ... 105s Selecting previously unselected package liblapack3:ppc64el. 105s Preparing to unpack .../03-liblapack3_3.12.1-7_ppc64el.deb ... 105s Unpacking liblapack3:ppc64el (3.12.1-7) ... 106s Selecting previously unselected package python3-numpy. 106s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_ppc64el.deb ... 106s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 106s Selecting previously unselected package libfontenc1:ppc64el. 106s Preparing to unpack .../05-libfontenc1_1%3a1.1.8-1build2_ppc64el.deb ... 106s Unpacking libfontenc1:ppc64el (1:1.1.8-1build2) ... 106s Selecting previously unselected package x11-common. 106s Preparing to unpack .../06-x11-common_1%3a7.7+24ubuntu1_all.deb ... 106s Unpacking x11-common (1:7.7+24ubuntu1) ... 106s Selecting previously unselected package xfonts-encodings. 106s Preparing to unpack .../07-xfonts-encodings_1%3a1.0.5-0ubuntu3_all.deb ... 106s Unpacking xfonts-encodings (1:1.0.5-0ubuntu3) ... 106s Selecting previously unselected package xfonts-utils. 106s Preparing to unpack .../08-xfonts-utils_1%3a7.7+7_ppc64el.deb ... 106s Unpacking xfonts-utils (1:7.7+7) ... 106s Selecting previously unselected package fonts-urw-base35. 106s Preparing to unpack .../09-fonts-urw-base35_20200910-8_all.deb ... 106s Unpacking fonts-urw-base35 (20200910-8) ... 106s Selecting previously unselected package fontconfig-config. 106s Preparing to unpack .../10-fontconfig-config_2.15.0-2.3ubuntu1_ppc64el.deb ... 106s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 106s Selecting previously unselected package libfontconfig1:ppc64el. 106s Preparing to unpack .../11-libfontconfig1_2.15.0-2.3ubuntu1_ppc64el.deb ... 106s Unpacking libfontconfig1:ppc64el (2.15.0-2.3ubuntu1) ... 106s Selecting previously unselected package libpixman-1-0:ppc64el. 106s Preparing to unpack .../12-libpixman-1-0_0.46.4-1_ppc64el.deb ... 106s Unpacking libpixman-1-0:ppc64el (0.46.4-1) ... 106s Selecting previously unselected package libxcb-render0:ppc64el. 106s Preparing to unpack .../13-libxcb-render0_1.17.0-2build1_ppc64el.deb ... 106s Unpacking libxcb-render0:ppc64el (1.17.0-2build1) ... 106s Selecting previously unselected package libxcb-shm0:ppc64el. 106s Preparing to unpack .../14-libxcb-shm0_1.17.0-2build1_ppc64el.deb ... 106s Unpacking libxcb-shm0:ppc64el (1.17.0-2build1) ... 106s Selecting previously unselected package libxrender1:ppc64el. 106s Preparing to unpack .../15-libxrender1_1%3a0.9.12-1_ppc64el.deb ... 106s Unpacking libxrender1:ppc64el (1:0.9.12-1) ... 106s Selecting previously unselected package libcairo2:ppc64el. 106s Preparing to unpack .../16-libcairo2_1.18.4-1build1_ppc64el.deb ... 106s Unpacking libcairo2:ppc64el (1.18.4-1build1) ... 106s Selecting previously unselected package libdeflate0:ppc64el. 106s Preparing to unpack .../17-libdeflate0_1.23-2_ppc64el.deb ... 106s Unpacking libdeflate0:ppc64el (1.23-2) ... 106s Selecting previously unselected package libgomp1:ppc64el. 106s Preparing to unpack .../18-libgomp1_15.2.0-9ubuntu1_ppc64el.deb ... 106s Unpacking libgomp1:ppc64el (15.2.0-9ubuntu1) ... 106s Selecting previously unselected package libgraphite2-3:ppc64el. 106s Preparing to unpack .../19-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 106s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 106s Selecting previously unselected package libharfbuzz0b:ppc64el. 106s Preparing to unpack .../20-libharfbuzz0b_12.1.0-1_ppc64el.deb ... 106s Unpacking libharfbuzz0b:ppc64el (12.1.0-1) ... 106s Selecting previously unselected package libimagequant0:ppc64el. 106s Preparing to unpack .../21-libimagequant0_2.18.0-1build1_ppc64el.deb ... 106s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 106s Selecting previously unselected package libjpeg-turbo8:ppc64el. 106s Preparing to unpack .../22-libjpeg-turbo8_2.1.5-4ubuntu2_ppc64el.deb ... 106s Unpacking libjpeg-turbo8:ppc64el (2.1.5-4ubuntu2) ... 106s Selecting previously unselected package libjpeg8:ppc64el. 106s Preparing to unpack .../23-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 106s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 106s Selecting previously unselected package liblcms2-2:ppc64el. 106s Preparing to unpack .../24-liblcms2-2_2.17-1_ppc64el.deb ... 106s Unpacking liblcms2-2:ppc64el (2.17-1) ... 106s Selecting previously unselected package liblerc4:ppc64el. 106s Preparing to unpack .../25-liblerc4_4.0.0+ds-5ubuntu1_ppc64el.deb ... 106s Unpacking liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 106s Selecting previously unselected package libraqm0:ppc64el. 106s Preparing to unpack .../26-libraqm0_0.10.3-1_ppc64el.deb ... 106s Unpacking libraqm0:ppc64el (0.10.3-1) ... 106s Selecting previously unselected package libsharpyuv0:ppc64el. 106s Preparing to unpack .../27-libsharpyuv0_1.5.0-0.1_ppc64el.deb ... 106s Unpacking libsharpyuv0:ppc64el (1.5.0-0.1) ... 106s Selecting previously unselected package libjbig0:ppc64el. 106s Preparing to unpack .../28-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ... 106s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ... 106s Selecting previously unselected package libwebp7:ppc64el. 106s Preparing to unpack .../29-libwebp7_1.5.0-0.1_ppc64el.deb ... 106s Unpacking libwebp7:ppc64el (1.5.0-0.1) ... 106s Selecting previously unselected package libtiff6:ppc64el. 106s Preparing to unpack .../30-libtiff6_4.7.0-3ubuntu3_ppc64el.deb ... 106s Unpacking libtiff6:ppc64el (4.7.0-3ubuntu3) ... 106s Selecting previously unselected package libwebpdemux2:ppc64el. 106s Preparing to unpack .../31-libwebpdemux2_1.5.0-0.1_ppc64el.deb ... 106s Unpacking libwebpdemux2:ppc64el (1.5.0-0.1) ... 106s Selecting previously unselected package libwebpmux3:ppc64el. 106s Preparing to unpack .../32-libwebpmux3_1.5.0-0.1_ppc64el.deb ... 106s Unpacking libwebpmux3:ppc64el (1.5.0-0.1) ... 106s Selecting previously unselected package python3-charset-normalizer. 106s Preparing to unpack .../33-python3-charset-normalizer_3.4.4-2_ppc64el.deb ... 106s Unpacking python3-charset-normalizer (3.4.4-2) ... 107s Selecting previously unselected package libopenjp2-7:ppc64el. 107s Preparing to unpack .../34-libopenjp2-7_2.5.3-2.1_ppc64el.deb ... 107s Unpacking libopenjp2-7:ppc64el (2.5.3-2.1) ... 107s Selecting previously unselected package python3-pil:ppc64el. 107s Preparing to unpack .../35-python3-pil_12.0.0-1ubuntu1_ppc64el.deb ... 107s Unpacking python3-pil:ppc64el (12.0.0-1ubuntu1) ... 107s Selecting previously unselected package python3-cairo. 107s Preparing to unpack .../36-python3-cairo_1.27.0-2build1_ppc64el.deb ... 107s Unpacking python3-cairo (1.27.0-2build1) ... 107s Selecting previously unselected package python3-freetype. 107s Preparing to unpack .../37-python3-freetype_2.5.1-2_all.deb ... 107s Unpacking python3-freetype (2.5.1-2) ... 107s Selecting previously unselected package python3-rlpycairo. 107s Preparing to unpack .../38-python3-rlpycairo_0.3.0-4_all.deb ... 107s Unpacking python3-rlpycairo (0.3.0-4) ... 107s Selecting previously unselected package python3-reportlab. 107s Preparing to unpack .../39-python3-reportlab_4.4.5-1_all.deb ... 107s Unpacking python3-reportlab (4.4.5-1) ... 107s Selecting previously unselected package sgml-base. 107s Preparing to unpack .../40-sgml-base_1.31+nmu1_all.deb ... 107s Unpacking sgml-base (1.31+nmu1) ... 107s Selecting previously unselected package xml-core. 107s Preparing to unpack .../41-xml-core_0.19_all.deb ... 107s Unpacking xml-core (0.19) ... 107s Selecting previously unselected package w3c-sgml-lib. 107s Preparing to unpack .../42-w3c-sgml-lib_1.3-3_all.deb ... 107s Unpacking w3c-sgml-lib (1.3-3) ... 107s Selecting previously unselected package python3-biopython. 107s Preparing to unpack .../43-python3-biopython_1.86+dfsg-1_ppc64el.deb ... 107s Unpacking python3-biopython (1.86+dfsg-1) ... 107s Selecting previously unselected package python3-peptidebuilder. 107s Preparing to unpack .../44-python3-peptidebuilder_1.1.0-3_all.deb ... 107s Unpacking python3-peptidebuilder (1.1.0-3) ... 107s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 107s Setting up liblcms2-2:ppc64el (2.17-1) ... 107s Setting up libpixman-1-0:ppc64el (0.46.4-1) ... 107s Setting up libsharpyuv0:ppc64el (1.5.0-0.1) ... 107s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 107s Setting up libxrender1:ppc64el (1:0.9.12-1) ... 107s Setting up libxcb-render0:ppc64el (1.17.0-2build1) ... 107s Setting up python3-charset-normalizer (3.4.4-2) ... 107s Setting up x11-common (1:7.7+24ubuntu1) ... 107s Setting up libdeflate0:ppc64el (1.23-2) ... 107s Setting up libxcb-shm0:ppc64el (1.17.0-2build1) ... 107s Setting up libgomp1:ppc64el (15.2.0-9ubuntu1) ... 107s Setting up python3-freetype (2.5.1-2) ... 108s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ... 108s Setting up libfontenc1:ppc64el (1:1.1.8-1build2) ... 108s Setting up libblas3:ppc64el (3.12.1-7) ... 108s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 108s Setting up xfonts-encodings (1:1.0.5-0ubuntu3) ... 108s Setting up libimagequant0:ppc64el (2.18.0-1build1) ... 108s Setting up python3-numpy-dev:ppc64el (1:2.2.4+ds-1ubuntu1) ... 108s Setting up libjpeg-turbo8:ppc64el (2.1.5-4ubuntu2) ... 108s Setting up libgfortran5:ppc64el (15.2.0-9ubuntu1) ... 108s Setting up libwebp7:ppc64el (1.5.0-0.1) ... 108s Setting up libopenjp2-7:ppc64el (2.5.3-2.1) ... 108s Setting up libharfbuzz0b:ppc64el (12.1.0-1) ... 108s Setting up sgml-base (1.31+nmu1) ... 108s Setting up libwebpmux3:ppc64el (1.5.0-0.1) ... 108s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 108s Setting up liblapack3:ppc64el (3.12.1-7) ... 108s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 108s Setting up libwebpdemux2:ppc64el (1.5.0-0.1) ... 108s Setting up xfonts-utils (1:7.7+7) ... 108s Setting up libraqm0:ppc64el (0.10.3-1) ... 108s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 109s Setting up libtiff6:ppc64el (4.7.0-3ubuntu3) ... 109s Setting up xml-core (0.19) ... 110s Setting up fonts-urw-base35 (20200910-8) ... 110s Setting up python3-pil:ppc64el (12.0.0-1ubuntu1) ... 110s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 110s Setting up libfontconfig1:ppc64el (2.15.0-2.3ubuntu1) ... 110s Setting up libcairo2:ppc64el (1.18.4-1build1) ... 110s Setting up python3-cairo (1.27.0-2build1) ... 111s Setting up python3-rlpycairo (0.3.0-4) ... 111s Setting up python3-reportlab (4.4.5-1) ... 111s Processing triggers for libc-bin (2.42-2ubuntu2) ... 112s Processing triggers for man-db (2.13.1-1) ... 113s Processing triggers for sgml-base (1.31+nmu1) ... 113s Setting up w3c-sgml-lib (1.3-3) ... 143s Setting up python3-biopython (1.86+dfsg-1) ... 144s Setting up python3-peptidebuilder (1.1.0-3) ... 145s autopkgtest [04:23:02]: test run-unit-test: [----------------------- 145s Test 1 145s ATOM 1 N GLY A 1 -0.521 1.364 0.000 1.00 0.00 N 145s ATOM 2 CA GLY A 1 0.000 0.000 0.000 1.00 0.00 C 145s ATOM 3 C GLY A 1 1.520 0.000 0.000 1.00 0.00 C 145s ATOM 4 O GLY A 1 2.144 -0.812 0.681 1.00 0.00 O 145s ATOM 5 N GLY A 2 2.116 0.911 -0.764 1.00 0.00 N 145s ATOM 6 CA GLY A 2 3.571 1.003 -0.842 1.00 0.00 C 145s ATOM 7 C GLY A 2 4.170 1.286 0.526 1.00 0.00 C 145s ATOM 8 O GLY A 2 5.209 0.730 0.881 1.00 0.00 O 145s ATOM 9 N GLY A 3 3.516 2.151 1.297 1.00 0.00 N 145s ATOM 10 CA GLY A 3 3.999 2.498 2.630 1.00 0.00 C 145s ATOM 11 C GLY A 3 4.074 1.266 3.517 1.00 0.00 C 145s ATOM 12 O GLY A 3 5.018 1.109 4.290 1.00 0.00 O 145s ATOM 13 N GLY A 4 3.079 0.390 3.407 1.00 0.00 N 145s ATOM 14 CA GLY A 4 3.046 -0.829 4.210 1.00 0.00 C 145s ATOM 15 C GLY A 4 4.268 -1.691 3.936 1.00 0.00 C 145s ATOM 16 O GLY A 4 4.839 -2.275 4.856 1.00 0.00 O 145s ATOM 17 N GLY A 5 4.671 -1.770 2.671 1.00 0.00 N 145s ATOM 18 CA GLY A 5 5.832 -2.569 2.291 1.00 0.00 C 145s ATOM 19 C GLY A 5 7.084 -2.076 2.999 1.00 0.00 C 145s ATOM 20 O GLY A 5 7.910 -2.875 3.437 1.00 0.00 O 145s ATOM 21 N GLY A 6 7.225 -0.758 3.112 1.00 0.00 N 145s ATOM 22 CA GLY A 6 8.387 -0.172 3.773 1.00 0.00 C 145s ATOM 23 C GLY A 6 8.479 -0.633 5.219 1.00 0.00 C 145s ATOM 24 O GLY A 6 9.395 -0.244 5.941 1.00 0.00 O 145s ATOM 25 OXT GLY A 6 7.638 -1.400 5.684 1.00 0.00 O 145s TER 26 GLY A 6 145s END 145s PASS 145s Test 2 185s 1aq7 185s 1gfl 185s 1nbw 185s 1vca 185s 2o6r 185s 2r83 185s 3cap 185s 3cuq 185s 3vni 185s 7tim 185s PDBs/Aligned_150_AllAngles_1aq7_clean.pdb 185s PDBs/Aligned_150_AllAngles_1gfl_clean.pdb 185s PDBs/Aligned_150_AllAngles_1nbw_clean.pdb 185s PDBs/Aligned_150_AllAngles_1vca_clean.pdb 185s PDBs/Aligned_150_AllAngles_2o6r_clean.pdb 185s PDBs/Aligned_150_AllAngles_2r83_clean.pdb 185s PDBs/Aligned_150_AllAngles_3cap_clean.pdb 185s PDBs/Aligned_150_AllAngles_3cuq_clean.pdb 185s PDBs/Aligned_150_AllAngles_3vni_clean.pdb 185s PDBs/Aligned_150_AllAngles_7tim_clean.pdb 185s PDBs/Aligned_150_Backbone_1aq7_clean.pdb 185s PDBs/Aligned_150_Backbone_1gfl_clean.pdb 185s PDBs/Aligned_150_Backbone_1nbw_clean.pdb 185s PDBs/Aligned_150_Backbone_1vca_clean.pdb 185s PDBs/Aligned_150_Backbone_2o6r_clean.pdb 185s PDBs/Aligned_150_Backbone_2r83_clean.pdb 185s PDBs/Aligned_150_Backbone_3cap_clean.pdb 185s PDBs/Aligned_150_Backbone_3cuq_clean.pdb 185s PDBs/Aligned_150_Backbone_3vni_clean.pdb 185s PDBs/Aligned_150_Backbone_7tim_clean.pdb 185s PDBs/Aligned_150_PhiPsiOmega_1aq7_clean.pdb 185s PDBs/Aligned_150_PhiPsiOmega_1gfl_clean.pdb 185s PDBs/Aligned_150_PhiPsiOmega_1nbw_clean.pdb 185s PDBs/Aligned_150_PhiPsiOmega_1vca_clean.pdb 185s PDBs/Aligned_150_PhiPsiOmega_2o6r_clean.pdb 185s PDBs/Aligned_150_PhiPsiOmega_2r83_clean.pdb 185s PDBs/Aligned_150_PhiPsiOmega_3cap_clean.pdb 185s PDBs/Aligned_150_PhiPsiOmega_3cuq_clean.pdb 185s PDBs/Aligned_150_PhiPsiOmega_3vni_clean.pdb 185s PDBs/Aligned_150_PhiPsiOmega_7tim_clean.pdb 185s PDBs/Aligned_150_PhiPsi_1aq7_clean.pdb 185s PDBs/Aligned_150_PhiPsi_1gfl_clean.pdb 185s PDBs/Aligned_150_PhiPsi_1nbw_clean.pdb 185s PDBs/Aligned_150_PhiPsi_1vca_clean.pdb 185s PDBs/Aligned_150_PhiPsi_2o6r_clean.pdb 185s PDBs/Aligned_150_PhiPsi_2r83_clean.pdb 185s PDBs/Aligned_150_PhiPsi_3cap_clean.pdb 185s PDBs/Aligned_150_PhiPsi_3cuq_clean.pdb 185s PDBs/Aligned_150_PhiPsi_3vni_clean.pdb 185s PDBs/Aligned_150_PhiPsi_7tim_clean.pdb 185s PDBs/Aligned_50_AllAngles_1aq7_clean.pdb 185s PDBs/Aligned_50_AllAngles_1gfl_clean.pdb 185s PDBs/Aligned_50_AllAngles_1nbw_clean.pdb 185s PDBs/Aligned_50_AllAngles_1vca_clean.pdb 185s PDBs/Aligned_50_AllAngles_2o6r_clean.pdb 185s PDBs/Aligned_50_AllAngles_2r83_clean.pdb 185s PDBs/Aligned_50_AllAngles_3cap_clean.pdb 185s PDBs/Aligned_50_AllAngles_3cuq_clean.pdb 185s PDBs/Aligned_50_AllAngles_3vni_clean.pdb 185s PDBs/Aligned_50_AllAngles_7tim_clean.pdb 185s PDBs/Aligned_50_Backbone_1aq7_clean.pdb 185s PDBs/Aligned_50_Backbone_1gfl_clean.pdb 185s PDBs/Aligned_50_Backbone_1nbw_clean.pdb 185s PDBs/Aligned_50_Backbone_1vca_clean.pdb 185s PDBs/Aligned_50_Backbone_2o6r_clean.pdb 185s PDBs/Aligned_50_Backbone_2r83_clean.pdb 185s PDBs/Aligned_50_Backbone_3cap_clean.pdb 185s PDBs/Aligned_50_Backbone_3cuq_clean.pdb 185s PDBs/Aligned_50_Backbone_3vni_clean.pdb 185s PDBs/Aligned_50_Backbone_7tim_clean.pdb 185s PDBs/Aligned_50_PhiPsiOmega_1aq7_clean.pdb 185s PDBs/Aligned_50_PhiPsiOmega_1gfl_clean.pdb 185s PDBs/Aligned_50_PhiPsiOmega_1nbw_clean.pdb 185s PDBs/Aligned_50_PhiPsiOmega_1vca_clean.pdb 185s PDBs/Aligned_50_PhiPsiOmega_2o6r_clean.pdb 185s PDBs/Aligned_50_PhiPsiOmega_2r83_clean.pdb 185s PDBs/Aligned_50_PhiPsiOmega_3cap_clean.pdb 185s PDBs/Aligned_50_PhiPsiOmega_3cuq_clean.pdb 185s PDBs/Aligned_50_PhiPsiOmega_3vni_clean.pdb 185s PDBs/Aligned_50_PhiPsiOmega_7tim_clean.pdb 185s PDBs/Aligned_50_PhiPsi_1aq7_clean.pdb 185s PDBs/Aligned_50_PhiPsi_1gfl_clean.pdb 185s PDBs/Aligned_50_PhiPsi_1nbw_clean.pdb 185s PDBs/Aligned_50_PhiPsi_1vca_clean.pdb 185s PDBs/Aligned_50_PhiPsi_2o6r_clean.pdb 185s PDBs/Aligned_50_PhiPsi_2r83_clean.pdb 185s PDBs/Aligned_50_PhiPsi_3cap_clean.pdb 185s PDBs/Aligned_50_PhiPsi_3cuq_clean.pdb 185s PDBs/Aligned_50_PhiPsi_3vni_clean.pdb 185s PDBs/Aligned_50_PhiPsi_7tim_clean.pdb 185s PDBs/Aligned_AllAngles_1aq7_clean.pdb 185s PDBs/Aligned_AllAngles_1gfl_clean.pdb 185s PDBs/Aligned_AllAngles_1nbw_clean.pdb 185s PDBs/Aligned_AllAngles_1vca_clean.pdb 186s PDBs/Aligned_AllAngles_2o6r_clean.pdb 186s PDBs/Aligned_AllAngles_2r83_clean.pdb 186s PDBs/Aligned_AllAngles_3cap_clean.pdb 186s PDBs/Aligned_AllAngles_3cuq_clean.pdb 186s PDBs/Aligned_AllAngles_3vni_clean.pdb 186s PDBs/Aligned_AllAngles_7tim_clean.pdb 186s PDBs/Aligned_Backbone_1aq7_clean.pdb 186s PDBs/Aligned_Backbone_1gfl_clean.pdb 186s PDBs/Aligned_Backbone_1nbw_clean.pdb 186s PDBs/Aligned_Backbone_1vca_clean.pdb 186s PDBs/Aligned_Backbone_2o6r_clean.pdb 186s PDBs/Aligned_Backbone_2r83_clean.pdb 186s PDBs/Aligned_Backbone_3cap_clean.pdb 186s PDBs/Aligned_Backbone_3cuq_clean.pdb 186s PDBs/Aligned_Backbone_3vni_clean.pdb 186s PDBs/Aligned_Backbone_7tim_clean.pdb 186s PDBs/Aligned_PhiPsiOmega_1aq7_clean.pdb 186s PDBs/Aligned_PhiPsiOmega_1gfl_clean.pdb 186s PDBs/Aligned_PhiPsiOmega_1nbw_clean.pdb 186s PDBs/Aligned_PhiPsiOmega_1vca_clean.pdb 186s PDBs/Aligned_PhiPsiOmega_2o6r_clean.pdb 186s PDBs/Aligned_PhiPsiOmega_2r83_clean.pdb 186s PDBs/Aligned_PhiPsiOmega_3cap_clean.pdb 186s PDBs/Aligned_PhiPsiOmega_3cuq_clean.pdb 186s PDBs/Aligned_PhiPsiOmega_3vni_clean.pdb 186s PDBs/Aligned_PhiPsiOmega_7tim_clean.pdb 186s PDBs/Aligned_PhiPsi_1aq7_clean.pdb 186s PDBs/Aligned_PhiPsi_1gfl_clean.pdb 186s PDBs/Aligned_PhiPsi_1nbw_clean.pdb 186s PDBs/Aligned_PhiPsi_1vca_clean.pdb 186s PDBs/Aligned_PhiPsi_2o6r_clean.pdb 186s PDBs/Aligned_PhiPsi_2r83_clean.pdb 186s PDBs/Aligned_PhiPsi_3cap_clean.pdb 186s PDBs/Aligned_PhiPsi_3cuq_clean.pdb 186s PDBs/Aligned_PhiPsi_3vni_clean.pdb 186s PDBs/Aligned_PhiPsi_7tim_clean.pdb 186s PDBs/AllAngles_1aq7_clean.pdb 186s PDBs/AllAngles_1gfl_clean.pdb 186s PDBs/AllAngles_1nbw_clean.pdb 186s PDBs/AllAngles_1vca_clean.pdb 186s PDBs/AllAngles_2o6r_clean.pdb 186s PDBs/AllAngles_2r83_clean.pdb 186s PDBs/AllAngles_3cap_clean.pdb 186s PDBs/AllAngles_3cuq_clean.pdb 186s PDBs/AllAngles_3vni_clean.pdb 186s PDBs/AllAngles_7tim_clean.pdb 186s PDBs/Backbone_1aq7_clean.pdb 186s PDBs/Backbone_1gfl_clean.pdb 186s PDBs/Backbone_1nbw_clean.pdb 186s PDBs/Backbone_1vca_clean.pdb 186s PDBs/Backbone_2o6r_clean.pdb 186s PDBs/Backbone_2r83_clean.pdb 186s PDBs/Backbone_3cap_clean.pdb 186s PDBs/Backbone_3cuq_clean.pdb 186s PDBs/Backbone_3vni_clean.pdb 186s PDBs/Backbone_7tim_clean.pdb 186s PDBs/PhiPsiOmega_1aq7_clean.pdb 186s PDBs/PhiPsiOmega_1gfl_clean.pdb 186s PDBs/PhiPsiOmega_1nbw_clean.pdb 186s PDBs/PhiPsiOmega_1vca_clean.pdb 186s PDBs/PhiPsiOmega_2o6r_clean.pdb 186s PDBs/PhiPsiOmega_2r83_clean.pdb 186s PDBs/PhiPsiOmega_3cap_clean.pdb 186s PDBs/PhiPsiOmega_3cuq_clean.pdb 186s PDBs/PhiPsiOmega_3vni_clean.pdb 186s PDBs/PhiPsiOmega_7tim_clean.pdb 186s PDBs/PhiPsi_1aq7_clean.pdb 186s PDBs/PhiPsi_1gfl_clean.pdb 186s PDBs/PhiPsi_1nbw_clean.pdb 186s PDBs/PhiPsi_1vca_clean.pdb 186s PDBs/PhiPsi_2o6r_clean.pdb 186s PDBs/PhiPsi_2r83_clean.pdb 186s PDBs/PhiPsi_3cap_clean.pdb 186s PDBs/PhiPsi_3cuq_clean.pdb 186s PDBs/PhiPsi_3vni_clean.pdb 186s PDBs/PhiPsi_7tim_clean.pdb 186s PASS 186s autopkgtest [04:23:43]: test run-unit-test: -----------------------] 186s run-unit-test PASS 186s autopkgtest [04:23:43]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 187s autopkgtest [04:23:44]: @@@@@@@@@@@@@@@@@@@@ summary 187s run-unit-test PASS