0s autopkgtest [00:33:21]: starting date and time: 2025-10-22 00:33:21+0000 0s autopkgtest [00:33:21]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [00:33:21]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.dx2rcvqj/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest,src:python-pluggy --apt-upgrade pairtools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=pytest/8.4.2-1 python-pluggy/1.6.0-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-ppc64el-20.secgroup --name adt-resolute-ppc64el-pairtools-20251022-003321-juju-7f2275-prod-proposed-migration-environment-2-10436cdb-406d-40da-961d-e312f0ce03b9 --image adt/ubuntu-resolute-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-ppc64el-pairtools-20251022-003321-juju-7f2275-prod-proposed-migration-environment-2-10436cdb-406d-40da-961d-e312f0ce03b9 from image adt/ubuntu-resolute-ppc64el-server-20251021.img (UUID c177abc7-cbc1-4b1f-967f-196ea722a402)... 49s autopkgtest [00:34:10]: testbed dpkg architecture: ppc64el 49s autopkgtest [00:34:10]: testbed apt version: 3.1.8ubuntu1 49s autopkgtest [00:34:10]: @@@@@@@@@@@@@@@@@@@@ test bed setup 49s autopkgtest [00:34:10]: testbed release detected to be: None 50s autopkgtest [00:34:11]: updating testbed package index (apt update) 51s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 51s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 51s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 51s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 51s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [57.6 kB] 51s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [15.0 kB] 51s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 51s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [599 kB] 51s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el Packages [121 kB] 51s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted ppc64el Packages [940 B] 51s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el Packages [397 kB] 51s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse ppc64el Packages [4596 B] 52s Fetched 1283 kB in 1s (1108 kB/s) 52s Reading package lists... 53s Failed to check for VM: Permission denied 53s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 53s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 53s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 53s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 54s Reading package lists... 54s Reading package lists... 54s Building dependency tree... 54s Reading state information... 55s Calculating upgrade... 55s The following packages will be upgraded: 55s dracut-install 55s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 55s Need to get 49.5 kB of archives. 55s After this operation, 1024 B of additional disk space will be used. 55s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el dracut-install ppc64el 108-8ubuntu1 [49.5 kB] 55s dpkg-preconfigure: unable to re-open stdin: No such file or directory 55s Fetched 49.5 kB in 0s (167 kB/s) 56s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76480 files and directories currently installed.) 56s Preparing to unpack .../dracut-install_108-8ubuntu1_ppc64el.deb ... 56s Unpacking dracut-install (108-8ubuntu1) over (108-3ubuntu3) ... 56s Setting up dracut-install (108-8ubuntu1) ... 56s autopkgtest [00:34:17]: upgrading testbed (apt dist-upgrade and autopurge) 56s Reading package lists... 56s Building dependency tree... 56s Reading state information... 56s Calculating upgrade... 56s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 57s Reading package lists... 57s Building dependency tree... 57s Reading state information... 57s Solving dependencies... 57s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 60s autopkgtest [00:34:21]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:02:41 UTC 2025 60s autopkgtest [00:34:21]: @@@@@@@@@@@@@@@@@@@@ apt-source pairtools 63s Get:1 http://ftpmaster.internal/ubuntu resolute/universe pairtools 1.1.3-1build1 (dsc) [2493 B] 63s Get:2 http://ftpmaster.internal/ubuntu resolute/universe pairtools 1.1.3-1build1 (tar) [1420 kB] 63s Get:3 http://ftpmaster.internal/ubuntu resolute/universe pairtools 1.1.3-1build1 (diff) [7720 B] 63s gpgv: Signature made Tue Mar 4 15:54:00 2025 UTC 63s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 63s gpgv: Can't check signature: No public key 63s dpkg-source: warning: cannot verify inline signature for ./pairtools_1.1.3-1build1.dsc: no acceptable signature found 63s autopkgtest [00:34:24]: testing package pairtools version 1.1.3-1build1 64s autopkgtest [00:34:25]: build not needed 65s autopkgtest [00:34:26]: test upstream-tests: preparing testbed 65s Reading package lists... 65s Building dependency tree... 65s Reading state information... 65s Solving dependencies... 65s The following NEW packages will be installed: 65s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libblas3 65s libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 65s libharfbuzz0b libhts3t64 libhtscodecs2 libimagequant0 libjbig0 65s libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblcms2-2 65s liblerc4 libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 65s libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 65s libxss1 libzopfli1 python-is-python3 python-matplotlib-data python3-bioframe 65s python3-brotli python3-click python3-contourpy python3-cycler 65s python3-dateutil python3-decorator python3-fonttools python3-fs 65s python3-iniconfig python3-kiwisolver python3-lxml python3-lz4 65s python3-matplotlib python3-mpmath python3-numpy python3-numpy-dev 65s python3-packaging python3-pairtools python3-pandas python3-pandas-lib 65s python3-pil python3-pil.imagetk python3-platformdirs python3-pluggy 65s python3-pysam python3-pytest python3-pytz python3-scipy 65s python3-standard-pipes python3-sympy python3-tk python3-ufolib2 65s python3-unicodedata2 python3-zopfli python3.13-tk tk8.6-blt2.5 unicode-data 65s x11-common 65s 0 upgraded, 79 newly installed, 0 to remove and 0 not upgraded. 65s Need to get 91.1 MB of archives. 65s After this operation, 423 MB of additional disk space will be used. 65s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy-dev ppc64el 1:2.2.4+ds-1ubuntu1 [153 kB] 66s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el libblas3 ppc64el 3.12.1-6build1 [291 kB] 66s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgfortran5 ppc64el 15.2.0-5ubuntu1 [620 kB] 66s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblapack3 ppc64el 3.12.1-6build1 [2960 kB] 66s Get:5 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy ppc64el 1:2.2.4+ds-1ubuntu1 [4887 kB] 67s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtcl8.6 ppc64el 8.6.17+dfsg-1 [1239 kB] 67s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 67s Get:8 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 67s Get:9 http://ftpmaster.internal/ubuntu resolute/main ppc64el fontconfig-config ppc64el 2.15.0-2.3ubuntu1 [38.1 kB] 67s Get:10 http://ftpmaster.internal/ubuntu resolute/main ppc64el libfontconfig1 ppc64el 2.15.0-2.3ubuntu1 [188 kB] 67s Get:11 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxrender1 ppc64el 1:0.9.12-1 [23.0 kB] 67s Get:12 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB] 67s Get:13 http://ftpmaster.internal/ubuntu resolute/main ppc64el x11-common all 1:7.7+24ubuntu1 [22.4 kB] 67s Get:14 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B] 67s Get:15 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtk8.6 ppc64el 8.6.17-1 [968 kB] 67s Get:16 http://ftpmaster.internal/ubuntu resolute/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-8 [778 kB] 67s Get:17 http://ftpmaster.internal/ubuntu resolute/main ppc64el blt ppc64el 2.5.3+dfsg-8 [4830 B] 67s Get:18 http://ftpmaster.internal/ubuntu resolute/universe ppc64el fonts-lyx all 2.4.4-1 [171 kB] 67s Get:19 http://ftpmaster.internal/ubuntu resolute/main ppc64el libdeflate0 ppc64el 1.23-2 [63.3 kB] 67s Get:20 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgomp1 ppc64el 15.2.0-5ubuntu1 [169 kB] 67s Get:21 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 67s Get:22 http://ftpmaster.internal/ubuntu resolute/main ppc64el libharfbuzz0b ppc64el 12.1.0-1 [679 kB] 67s Get:23 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libhtscodecs2 ppc64el 1.6.1-2 [113 kB] 67s Get:24 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libhts3t64 ppc64el 1.21+ds-1 [585 kB] 67s Get:25 http://ftpmaster.internal/ubuntu resolute/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 67s Get:26 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-4ubuntu2 [215 kB] 67s Get:27 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 67s Get:28 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 67s Get:29 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 67s Get:30 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblcms2-2 ppc64el 2.16-2 [243 kB] 67s Get:31 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu1 [298 kB] 67s Get:32 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6build1 [225 kB] 67s Get:33 http://ftpmaster.internal/ubuntu resolute/main ppc64el libraqm0 ppc64el 0.10.3-1 [19.6 kB] 67s Get:34 http://ftpmaster.internal/ubuntu resolute/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1 [22.3 kB] 67s Get:35 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB] 67s Get:36 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebp7 ppc64el 1.5.0-0.1 [315 kB] 67s Get:37 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtiff6 ppc64el 4.7.0-3ubuntu3 [307 kB] 67s Get:38 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebpdemux2 ppc64el 1.5.0-0.1 [14.6 kB] 67s Get:39 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebpmux3 ppc64el 1.5.0-0.1 [31.1 kB] 67s Get:40 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxslt1.1 ppc64el 1.1.43-0.1 [189 kB] 67s Get:41 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libzopfli1 ppc64el 1.0.3-3 [160 kB] 67s Get:42 http://ftpmaster.internal/ubuntu resolute/main ppc64el python-is-python3 all 3.13.3-1 [2768 B] 67s Get:43 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python-matplotlib-data all 3.10.1+dfsg1-4 [2930 kB] 67s Get:44 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-dateutil all 2.9.0-4 [80.3 kB] 67s Get:45 http://ftpmaster.internal/ubuntu resolute/main ppc64el libopenjp2-7 ppc64el 2.5.3-2.1 [251 kB] 67s Get:46 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-pil ppc64el 11.3.0-1ubuntu2 [654 kB] 67s Get:47 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.13-tk ppc64el 3.13.9-1 [108 kB] 67s Get:48 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-tk ppc64el 3.13.5-1 [9916 B] 67s Get:49 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pil.imagetk ppc64el 11.3.0-1ubuntu2 [10.3 kB] 67s Get:50 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-contourpy ppc64el 1.3.1-1build1 [218 kB] 67s Get:51 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-cycler all 0.12.1-2 [9850 B] 67s Get:52 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-brotli ppc64el 1.1.0-2build6 [430 kB] 67s Get:53 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-platformdirs all 4.3.7-1 [16.9 kB] 67s Get:54 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-fs all 2.4.16-7 [90.8 kB] 67s Get:55 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-lxml ppc64el 6.0.1-1build1 [2449 kB] 68s Get:56 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-lz4 ppc64el 4.4.4+dfsg-3 [28.9 kB] 68s Get:57 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-decorator all 5.2.1-2 [28.1 kB] 68s Get:58 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-scipy ppc64el 1.15.3-1 [18.2 MB] 68s Get:59 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-mpmath all 1.3.0-1 [425 kB] 68s Get:60 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-sympy all 1.13.3-5 [4229 kB] 69s Get:61 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 69s Get:62 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-unicodedata2 ppc64el 16.0.0+ds-1build1 [400 kB] 69s Get:63 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-zopfli ppc64el 0.2.3.post1-1 [10.9 kB] 69s Get:64 http://ftpmaster.internal/ubuntu resolute/universe ppc64el unicode-data all 16.0.0-1 [9513 kB] 69s Get:65 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-fonttools ppc64el 4.57.0-2build1 [1745 kB] 69s Get:66 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-kiwisolver ppc64el 1.4.7-3build2 [71.7 kB] 69s Get:67 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-packaging all 25.0-1 [52.8 kB] 69s Get:68 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-matplotlib ppc64el 3.10.1+dfsg1-4 [18.1 MB] 70s Get:69 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-pytz all 2025.2-3 [163 kB] 70s Get:70 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pandas-lib ppc64el 2.2.3+dfsg-9 [4865 kB] 70s Get:71 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pandas all 2.2.3+dfsg-9 [3112 kB] 70s Get:72 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-bioframe all 0.4.1-2 [76.3 kB] 70s Get:73 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-click all 8.2.0+0.really.8.1.8-1 [80.0 kB] 70s Get:74 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B] 70s Get:75 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-standard-pipes all 3.13.0-5 [7414 B] 70s Get:76 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pysam ppc64el 0.23.0+ds-1build1 [4039 kB] 71s Get:77 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pairtools ppc64el 1.1.3-1build1 [238 kB] 71s Get:78 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pluggy all 1.6.0-1 [21.0 kB] 71s Get:79 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el python3-pytest all 8.4.2-1 [268 kB] 71s Fetched 91.1 MB in 5s (17.4 MB/s) 71s Selecting previously unselected package python3-numpy-dev:ppc64el. 71s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76480 files and directories currently installed.) 71s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_ppc64el.deb ... 71s Unpacking python3-numpy-dev:ppc64el (1:2.2.4+ds-1ubuntu1) ... 71s Selecting previously unselected package libblas3:ppc64el. 71s Preparing to unpack .../01-libblas3_3.12.1-6build1_ppc64el.deb ... 71s Unpacking libblas3:ppc64el (3.12.1-6build1) ... 71s Selecting previously unselected package libgfortran5:ppc64el. 71s Preparing to unpack .../02-libgfortran5_15.2.0-5ubuntu1_ppc64el.deb ... 71s Unpacking libgfortran5:ppc64el (15.2.0-5ubuntu1) ... 71s Selecting previously unselected package liblapack3:ppc64el. 71s Preparing to unpack .../03-liblapack3_3.12.1-6build1_ppc64el.deb ... 71s Unpacking liblapack3:ppc64el (3.12.1-6build1) ... 71s Selecting previously unselected package python3-numpy. 71s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_ppc64el.deb ... 71s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 71s Selecting previously unselected package libtcl8.6:ppc64el. 71s Preparing to unpack .../05-libtcl8.6_8.6.17+dfsg-1_ppc64el.deb ... 71s Unpacking libtcl8.6:ppc64el (8.6.17+dfsg-1) ... 71s Selecting previously unselected package fonts-dejavu-mono. 71s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 71s Unpacking fonts-dejavu-mono (2.37-8) ... 71s Selecting previously unselected package fonts-dejavu-core. 71s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 71s Unpacking fonts-dejavu-core (2.37-8) ... 71s Selecting previously unselected package fontconfig-config. 71s Preparing to unpack .../08-fontconfig-config_2.15.0-2.3ubuntu1_ppc64el.deb ... 72s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 72s Selecting previously unselected package libfontconfig1:ppc64el. 72s Preparing to unpack .../09-libfontconfig1_2.15.0-2.3ubuntu1_ppc64el.deb ... 72s Unpacking libfontconfig1:ppc64el (2.15.0-2.3ubuntu1) ... 72s Selecting previously unselected package libxrender1:ppc64el. 72s Preparing to unpack .../10-libxrender1_1%3a0.9.12-1_ppc64el.deb ... 72s Unpacking libxrender1:ppc64el (1:0.9.12-1) ... 72s Selecting previously unselected package libxft2:ppc64el. 72s Preparing to unpack .../11-libxft2_2.3.6-1build1_ppc64el.deb ... 72s Unpacking libxft2:ppc64el (2.3.6-1build1) ... 72s Selecting previously unselected package x11-common. 72s Preparing to unpack .../12-x11-common_1%3a7.7+24ubuntu1_all.deb ... 72s Unpacking x11-common (1:7.7+24ubuntu1) ... 72s Selecting previously unselected package libxss1:ppc64el. 72s Preparing to unpack .../13-libxss1_1%3a1.2.3-1build3_ppc64el.deb ... 72s Unpacking libxss1:ppc64el (1:1.2.3-1build3) ... 72s Selecting previously unselected package libtk8.6:ppc64el. 72s Preparing to unpack .../14-libtk8.6_8.6.17-1_ppc64el.deb ... 72s Unpacking libtk8.6:ppc64el (8.6.17-1) ... 72s Selecting previously unselected package tk8.6-blt2.5. 72s Preparing to unpack .../15-tk8.6-blt2.5_2.5.3+dfsg-8_ppc64el.deb ... 72s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 72s Selecting previously unselected package blt. 72s Preparing to unpack .../16-blt_2.5.3+dfsg-8_ppc64el.deb ... 72s Unpacking blt (2.5.3+dfsg-8) ... 72s Selecting previously unselected package fonts-lyx. 72s Preparing to unpack .../17-fonts-lyx_2.4.4-1_all.deb ... 72s Unpacking fonts-lyx (2.4.4-1) ... 72s Selecting previously unselected package libdeflate0:ppc64el. 72s Preparing to unpack .../18-libdeflate0_1.23-2_ppc64el.deb ... 72s Unpacking libdeflate0:ppc64el (1.23-2) ... 72s Selecting previously unselected package libgomp1:ppc64el. 72s Preparing to unpack .../19-libgomp1_15.2.0-5ubuntu1_ppc64el.deb ... 72s Unpacking libgomp1:ppc64el (15.2.0-5ubuntu1) ... 72s Selecting previously unselected package libgraphite2-3:ppc64el. 72s Preparing to unpack .../20-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 72s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 72s Selecting previously unselected package libharfbuzz0b:ppc64el. 72s Preparing to unpack .../21-libharfbuzz0b_12.1.0-1_ppc64el.deb ... 72s Unpacking libharfbuzz0b:ppc64el (12.1.0-1) ... 72s Selecting previously unselected package libhtscodecs2:ppc64el. 72s Preparing to unpack .../22-libhtscodecs2_1.6.1-2_ppc64el.deb ... 72s Unpacking libhtscodecs2:ppc64el (1.6.1-2) ... 72s Selecting previously unselected package libhts3t64:ppc64el. 72s Preparing to unpack .../23-libhts3t64_1.21+ds-1_ppc64el.deb ... 72s Unpacking libhts3t64:ppc64el (1.21+ds-1) ... 72s Selecting previously unselected package libimagequant0:ppc64el. 72s Preparing to unpack .../24-libimagequant0_2.18.0-1build1_ppc64el.deb ... 72s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 72s Selecting previously unselected package libjpeg-turbo8:ppc64el. 72s Preparing to unpack .../25-libjpeg-turbo8_2.1.5-4ubuntu2_ppc64el.deb ... 72s Unpacking libjpeg-turbo8:ppc64el (2.1.5-4ubuntu2) ... 72s Selecting previously unselected package libjpeg8:ppc64el. 72s Preparing to unpack .../26-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 72s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 72s Selecting previously unselected package libjs-jquery. 72s Preparing to unpack .../27-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 72s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 72s Selecting previously unselected package libjs-jquery-ui. 72s Preparing to unpack .../28-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 72s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 72s 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unpack .../34-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ... 72s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ... 72s Selecting previously unselected package libwebp7:ppc64el. 72s Preparing to unpack .../35-libwebp7_1.5.0-0.1_ppc64el.deb ... 72s Unpacking libwebp7:ppc64el (1.5.0-0.1) ... 72s Selecting previously unselected package libtiff6:ppc64el. 72s Preparing to unpack .../36-libtiff6_4.7.0-3ubuntu3_ppc64el.deb ... 72s Unpacking libtiff6:ppc64el (4.7.0-3ubuntu3) ... 72s Selecting previously unselected package libwebpdemux2:ppc64el. 72s Preparing to unpack .../37-libwebpdemux2_1.5.0-0.1_ppc64el.deb ... 72s Unpacking libwebpdemux2:ppc64el (1.5.0-0.1) ... 72s Selecting previously unselected package libwebpmux3:ppc64el. 72s Preparing to unpack .../38-libwebpmux3_1.5.0-0.1_ppc64el.deb ... 72s Unpacking libwebpmux3:ppc64el (1.5.0-0.1) ... 72s Selecting previously unselected package libxslt1.1:ppc64el. 72s Preparing to unpack .../39-libxslt1.1_1.1.43-0.1_ppc64el.deb ... 72s Unpacking libxslt1.1:ppc64el (1.1.43-0.1) ... 72s Selecting previously unselected package libzopfli1. 72s Preparing to unpack .../40-libzopfli1_1.0.3-3_ppc64el.deb ... 72s Unpacking libzopfli1 (1.0.3-3) ... 72s Selecting previously unselected package python-is-python3. 72s Preparing to unpack .../41-python-is-python3_3.13.3-1_all.deb ... 72s Unpacking python-is-python3 (3.13.3-1) ... 72s Selecting previously unselected package python-matplotlib-data. 72s Preparing to unpack .../42-python-matplotlib-data_3.10.1+dfsg1-4_all.deb ... 72s Unpacking python-matplotlib-data (3.10.1+dfsg1-4) ... 72s Selecting previously unselected package python3-dateutil. 72s Preparing to unpack .../43-python3-dateutil_2.9.0-4_all.deb ... 72s Unpacking python3-dateutil (2.9.0-4) ... 72s Selecting previously unselected package libopenjp2-7:ppc64el. 72s Preparing to unpack .../44-libopenjp2-7_2.5.3-2.1_ppc64el.deb ... 72s Unpacking libopenjp2-7:ppc64el (2.5.3-2.1) ... 72s Selecting previously unselected package python3-pil:ppc64el. 72s Preparing to unpack .../45-python3-pil_11.3.0-1ubuntu2_ppc64el.deb ... 72s Unpacking python3-pil:ppc64el (11.3.0-1ubuntu2) ... 72s Selecting previously unselected package python3.13-tk. 72s Preparing to unpack .../46-python3.13-tk_3.13.9-1_ppc64el.deb ... 72s Unpacking python3.13-tk (3.13.9-1) ... 72s Selecting previously unselected package python3-tk:ppc64el. 72s Preparing to unpack .../47-python3-tk_3.13.5-1_ppc64el.deb ... 72s Unpacking python3-tk:ppc64el (3.13.5-1) ... 73s Selecting previously unselected package python3-pil.imagetk:ppc64el. 73s Preparing to unpack .../48-python3-pil.imagetk_11.3.0-1ubuntu2_ppc64el.deb ... 73s Unpacking python3-pil.imagetk:ppc64el (11.3.0-1ubuntu2) ... 73s Selecting previously unselected package python3-contourpy. 73s Preparing to unpack .../49-python3-contourpy_1.3.1-1build1_ppc64el.deb ... 73s Unpacking python3-contourpy (1.3.1-1build1) ... 73s Selecting previously unselected package python3-cycler. 73s Preparing to unpack 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previously unselected package python3-decorator. 73s Preparing to unpack .../56-python3-decorator_5.2.1-2_all.deb ... 73s Unpacking python3-decorator (5.2.1-2) ... 73s Selecting previously unselected package python3-scipy. 73s Preparing to unpack .../57-python3-scipy_1.15.3-1_ppc64el.deb ... 73s Unpacking python3-scipy (1.15.3-1) ... 73s Selecting previously unselected package python3-mpmath. 73s Preparing to unpack .../58-python3-mpmath_1.3.0-1_all.deb ... 73s Unpacking python3-mpmath (1.3.0-1) ... 73s Selecting previously unselected package python3-sympy. 73s Preparing to unpack .../59-python3-sympy_1.13.3-5_all.deb ... 73s Unpacking python3-sympy (1.13.3-5) ... 74s Selecting previously unselected package python3-ufolib2. 74s Preparing to unpack .../60-python3-ufolib2_0.17.1+dfsg1-1_all.deb ... 74s Unpacking python3-ufolib2 (0.17.1+dfsg1-1) ... 74s Selecting previously unselected package python3-unicodedata2. 74s Preparing to unpack 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Setting up python3-pytz (2025.2-3) ... 76s Setting up libgomp1:ppc64el (15.2.0-5ubuntu1) ... 76s Setting up python3-click (8.2.0+0.really.8.1.8-1) ... 76s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ... 76s Setting up python3-platformdirs (4.3.7-1) ... 76s Setting up python3-fs (2.4.16-7) ... 76s Setting up unicode-data (16.0.0-1) ... 76s Setting up python3-decorator (5.2.1-2) ... 76s Setting up libblas3:ppc64el (3.12.1-6build1) ... 76s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 76s Setting up python3-packaging (25.0-1) ... 77s Setting up libzopfli1 (1.0.3-3) ... 77s Setting up python3-brotli (1.1.0-2build6) ... 77s Setting up python3-cycler (0.12.1-2) ... 77s Setting up libimagequant0:ppc64el (2.18.0-1build1) ... 77s Setting up fonts-dejavu-mono (2.37-8) ... 77s Setting up python3-kiwisolver (1.4.7-3build2) ... 77s Setting up python3-numpy-dev:ppc64el (1:2.2.4+ds-1ubuntu1) ... 77s Setting up libtcl8.6:ppc64el (8.6.17+dfsg-1) ... 77s Setting up fonts-dejavu-core (2.37-8) ... 77s Setting up libjpeg-turbo8:ppc64el (2.1.5-4ubuntu2) ... 77s Setting up libgfortran5:ppc64el (15.2.0-5ubuntu1) ... 77s Setting up python3-pluggy (1.6.0-1) ... 77s Setting up libwebp7:ppc64el (1.5.0-0.1) ... 77s Setting up libxslt1.1:ppc64el (1.1.43-0.1) ... 77s Setting up libhts3t64:ppc64el (1.21+ds-1) ... 77s Setting up libopenjp2-7:ppc64el (2.5.3-2.1) ... 77s Setting up libharfbuzz0b:ppc64el (12.1.0-1) ... 77s Setting up python3-dateutil (2.9.0-4) ... 77s Setting up libxss1:ppc64el (1:1.2.3-1build3) ... 77s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 77s Setting up python3-mpmath (1.3.0-1) ... 78s Setting up python-matplotlib-data (3.10.1+dfsg1-4) ... 78s Setting up libwebpmux3:ppc64el (1.5.0-0.1) ... 78s Setting up python-is-python3 (3.13.3-1) ... 78s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 78s Setting up python3-sympy (1.13.3-5) ... 84s Setting up liblapack3:ppc64el (3.12.1-6build1) ... 84s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 84s Setting up python3-pysam (0.23.0+ds-1build1) ... 84s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 84s Setting up python3-pytest (8.4.2-1) ... 84s Setting up libwebpdemux2:ppc64el (1.5.0-0.1) ... 84s Setting up python3-zopfli (0.2.3.post1-1) ... 84s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 84s Setting up libraqm0:ppc64el (0.10.3-1) ... 84s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 86s Setting up python3-lxml:ppc64el (6.0.1-1build1) ... 86s Setting up libtiff6:ppc64el (4.7.0-3ubuntu3) ... 86s Setting up python3-contourpy (1.3.1-1build1) ... 86s Setting up libfontconfig1:ppc64el (2.15.0-2.3ubuntu1) ... 86s Setting up libxft2:ppc64el (2.3.6-1build1) ... 86s Setting up python3-scipy (1.15.3-1) ... 90s Setting up libtk8.6:ppc64el (8.6.17-1) ... 90s Setting up python3-pandas-lib:ppc64el (2.2.3+dfsg-9) ... 90s Setting up python3.13-tk (3.13.9-1) ... 90s Setting up python3-pil:ppc64el (11.3.0-1ubuntu2) ... 90s Setting up python3-pandas (2.2.3+dfsg-9) ... 95s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 95s Setting up blt (2.5.3+dfsg-8) ... 95s Setting up python3-tk:ppc64el (3.13.5-1) ... 95s Setting up python3-pil.imagetk:ppc64el (11.3.0-1ubuntu2) ... 95s Setting up python3-fonttools (4.57.0-2build1) ... 96s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... 96s Setting up python3-matplotlib (3.10.1+dfsg1-4) ... 97s Setting up python3-bioframe (0.4.1-2) ... 98s Setting up python3-pairtools (1.1.3-1build1) ... 98s Processing triggers for libc-bin (2.42-0ubuntu3) ... 98s Processing triggers for man-db (2.13.1-1) ... 100s autopkgtest [00:35:01]: test upstream-tests: [----------------------- 100s 100s rm -rf pairtools 100s 100s pytest-3 --ignore=.pc 101s ============================= test session starts ============================== 101s platform linux -- Python 3.13.9, pytest-8.4.2, pluggy-1.6.0 101s rootdir: /tmp/autopkgtest.FBFWEN/build.YR9/src 101s configfile: pytest.ini 101s testpaths: tests 101s plugins: typeguard-4.4.2 101s collected 34 items 101s 107s tests/test_dedup.py . [ 2%] 110s tests/test_filterbycov.py . [ 5%] 111s tests/test_flip.py . [ 8%] 113s tests/test_header.py . [ 11%] 113s tests/test_headerops.py ....... [ 32%] 114s tests/test_markasdup.py . [ 35%] 118s tests/test_merge.py . [ 38%] 120s tests/test_parse.py ... [ 47%] 125s tests/test_parse2.py .... [ 58%] 126s tests/test_restrict.py . [ 61%] 127s tests/test_scaling.py . [ 64%] 134s tests/test_select.py ....... [ 85%] 135s tests/test_sort.py . [ 88%] 136s tests/test_split.py . [ 91%] 142s tests/test_stats.py ... [100%] 142s 142s =============================== warnings summary =============================== 142s ../../../../usr/lib/python3/dist-packages/pairtools/lib/fileio.py:2 142s /usr/lib/python3/dist-packages/pairtools/lib/fileio.py:2: DeprecationWarning: pipes was removed in Python 3.13. Please be aware that you are currently NOT using standard 'pipes', but instead a separately installed 'standard-pipes'. 142s import pipes 142s 142s tests/test_stats.py::test_find_dist_freq_convergence_distance 142s /usr/lib/python3/dist-packages/pairtools/lib/stats.py:466: RuntimeWarning: divide by zero encountered in scalar divide 142s strands: n_cis_pairs / norm_factor 142s 142s tests/test_stats.py::test_find_dist_freq_convergence_distance 142s /usr/lib/python3/dist-packages/pairtools/lib/stats.py:474: RuntimeWarning: divide by zero encountered in scalar divide 142s sum(list(n_cis_pairs_above_convergence_dist.values())) / norm_factor ) 142s 142s tests/test_stats.py::test_find_dist_freq_convergence_distance 142s /usr/lib/python3/dist-packages/pairtools/lib/stats.py:410: RuntimeWarning: invalid value encountered in divide 142s np.abs(dist_freqs_by_strands[strands] - avg_freq_all_strands) 142s 142s tests/test_stats.py::test_find_dist_freq_convergence_distance 142s /usr/lib/python3/dist-packages/pairtools/lib/stats.py:466: RuntimeWarning: invalid value encountered in scalar divide 142s strands: n_cis_pairs / norm_factor 142s 142s tests/test_stats.py::test_find_dist_freq_convergence_distance 142s /usr/lib/python3/dist-packages/pairtools/lib/stats.py:474: RuntimeWarning: invalid value encountered in scalar divide 142s sum(list(n_cis_pairs_above_convergence_dist.values())) / norm_factor ) 142s 142s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 142s ======================= 34 passed, 6 warnings in 41.35s ======================== 142s ALL PASS 142s 142s echo ALL PASS 142s autopkgtest [00:35:43]: test upstream-tests: -----------------------] 143s autopkgtest [00:35:44]: test upstream-tests: - - - - - - - - - - results - - - - - - - - - - 143s upstream-tests PASS 143s autopkgtest [00:35:44]: @@@@@@@@@@@@@@@@@@@@ summary 143s upstream-tests PASS