0s autopkgtest [07:42:27]: starting date and time: 2026-02-05 07:42:27+0000 0s autopkgtest [07:42:27]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [07:42:27]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.2oprco2j/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade mothur --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.42-2ubuntu5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-ppc64el-35.secgroup --name adt-resolute-ppc64el-mothur-20260205-074226-juju-7f2275-prod-proposed-migration-environment-2-cc87a72e-1047-4550-ad1a-ed1092768dad --image adt/ubuntu-resolute-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 7s Creating nova instance adt-resolute-ppc64el-mothur-20260205-074226-juju-7f2275-prod-proposed-migration-environment-2-cc87a72e-1047-4550-ad1a-ed1092768dad from image adt/ubuntu-resolute-ppc64el-server-20260205.img (UUID f866c950-0b62-4023-bac6-0f13279e15ed)... 67s autopkgtest [07:43:34]: testbed dpkg architecture: ppc64el 67s autopkgtest [07:43:34]: testbed apt version: 3.1.14 68s autopkgtest [07:43:35]: @@@@@@@@@@@@@@@@@@@@ test bed setup 68s autopkgtest [07:43:35]: testbed release detected to be: None 69s autopkgtest [07:43:36]: updating testbed package index (apt update) 69s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 69s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 69s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 69s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 69s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 69s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [228 kB] 69s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [35.4 kB] 69s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1719 kB] 70s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el Packages [261 kB] 70s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el Packages [1514 kB] 71s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse ppc64el Packages [21.9 kB] 71s Fetched 3910 kB in 2s (1677 kB/s) 73s Reading package lists... 74s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 74s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 74s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 74s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 75s Reading package lists... 75s Reading package lists... 75s Building dependency tree... 75s Reading state information... 75s Calculating upgrade... 75s The following packages will be upgraded: 75s libc-bin libc-gconv-modules-extra libc6 locales pollinate 75s python3-referencing sed 75s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 75s Need to get 8612 kB of archives. 75s After this operation, 0 B of additional disk space will be used. 75s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el sed ppc64el 4.9-2build3 [211 kB] 75s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libc-gconv-modules-extra ppc64el 2.42-2ubuntu5 [1448 kB] 76s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libc6 ppc64el 2.42-2ubuntu5 [1913 kB] 76s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libc-bin ppc64el 2.42-2ubuntu5 [748 kB] 76s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el locales all 2.42-2ubuntu5 [4255 kB] 78s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el pollinate all 4.33-4ubuntu5 [14.0 kB] 78s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 79s dpkg-preconfigure: unable to re-open stdin: No such file or directory 79s Fetched 8612 kB in 3s (3349 kB/s) 81s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 81s Preparing to unpack .../sed_4.9-2build3_ppc64el.deb ... 83s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 84s Setting up sed (4.9-2build3) ... 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 84s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_ppc64el.deb ... 84s Unpacking libc-gconv-modules-extra:ppc64el (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 85s Setting up libc-gconv-modules-extra:ppc64el (2.42-2ubuntu5) ... 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 85s Preparing to unpack .../libc6_2.42-2ubuntu5_ppc64el.deb ... 87s Unpacking libc6:ppc64el (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 88s Setting up libc6:ppc64el (2.42-2ubuntu5) ... 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 88s Preparing to unpack .../libc-bin_2.42-2ubuntu5_ppc64el.deb ... 88s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 89s Setting up libc-bin (2.42-2ubuntu5) ... 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 89s Preparing to unpack .../locales_2.42-2ubuntu5_all.deb ... 89s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 89s Preparing to unpack .../pollinate_4.33-4ubuntu5_all.deb ... 89s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ... 89s Preparing to unpack .../python3-referencing_0.36.2-1ubuntu2_all.deb ... 90s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ... 90s Setting up locales (2.42-2ubuntu5) ... 90s Generating locales (this might take a while)... 92s en_US.UTF-8... done 92s Generation complete. 92s Setting up pollinate (4.33-4ubuntu5) ... 102s Setting up python3-referencing (0.36.2-1ubuntu2) ... 102s Processing triggers for man-db (2.13.1-1) ... 108s Processing triggers for install-info (7.2-5) ... 108s Processing triggers for systemd (259-1ubuntu3) ... 109s autopkgtest [07:44:16]: upgrading testbed (apt dist-upgrade and autopurge) 109s Reading package lists... 110s Building dependency tree... 110s Reading state information... 110s Calculating upgrade... 110s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 110s Reading package lists... 110s Building dependency tree... 110s Reading state information... 110s Solving dependencies... 110s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 111s autopkgtest [07:44:18]: rebooting testbed after setup commands that affected boot 170s autopkgtest [07:45:17]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:45:54 UTC 2026 174s autopkgtest [07:45:21]: @@@@@@@@@@@@@@@@@@@@ apt-source mothur 176s Get:1 http://ftpmaster.internal/ubuntu resolute/universe mothur 1.48.1-1build1 (dsc) [2074 B] 176s Get:2 http://ftpmaster.internal/ubuntu resolute/universe mothur 1.48.1-1build1 (tar) [1654 kB] 176s Get:3 http://ftpmaster.internal/ubuntu resolute/universe mothur 1.48.1-1build1 (diff) [21.7 kB] 176s gpgv: Signature made Mon Jan 26 19:31:04 2026 UTC 176s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 176s gpgv: Can't check signature: No public key 176s dpkg-source: warning: cannot verify inline signature for ./mothur_1.48.1-1build1.dsc: no acceptable signature found 176s autopkgtest [07:45:23]: testing package mothur version 1.48.1-1build1 177s autopkgtest [07:45:24]: build not needed 178s autopkgtest [07:45:25]: test run-unit-test: preparing testbed 180s Reading package lists... 180s Building dependency tree... 180s Reading state information... 180s Solving dependencies... 180s The following NEW packages will be installed: 180s mothur 180s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 180s Need to get 4579 kB of archives. 180s After this operation, 14.2 MB of additional disk space will be used. 180s Get:1 http://ftpmaster.internal/ubuntu resolute/universe ppc64el mothur ppc64el 1.48.1-1build1 [4579 kB] 181s Fetched 4579 kB in 0s (12.2 MB/s) 181s Selecting previously unselected package mothur. 181s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 181s Preparing to unpack .../mothur_1.48.1-1build1_ppc64el.deb ... 181s Unpacking mothur (1.48.1-1build1) ... 181s Setting up mothur (1.48.1-1build1) ... 181s Processing triggers for man-db (2.13.1-1) ... 190s autopkgtest [07:45:37]: test run-unit-test: [----------------------- 190s Linux version 190s 190s Using ReadLine 190s mothur v.1.48.1 190s Last updated: 5/15/24 190s by 190s Patrick D. Schloss 190s 190s Department of Microbiology & Immunology 190s 190s University of Michigan 190s http://www.mothur.org 190s 190s When using, please cite: 190s Schloss, P.D., et al., Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol, 2009. 75(23):7537-41. 190s 190s Distributed under the GNU General Public License 190s 190s Type 'help()' for information on the commands that are available 190s 190s For questions and analysis support, please visit our forum at https://forum.mothur.org 190s 190s Type 'quit()' to exit program 190s 190s [NOTE]: Setting random seed to 19760620. 190s 190s Batch Mode 190s 190s 190s 190s mothur > unique.seqs(fasta=HA.fasta) 190s 599 259 190s 190s Output File Names: 190s HA.unique.fasta 190s HA.count_table 190s 191s 191s mothur > dist.seqs(fasta=HA.unique.fasta, countends=F, cutoff=0.01) 191s 191s Using 2 processors. 191s 191s Sequence Time Num_Dists_Below_Cutoff 191s 0 0 0 191s 200 0 3443 191s 100 0 5025 191s 258 0 15965 191s 182 0 16617 191s 191s It took 0 secs to find distances for 259 sequences. 32582 distances below cutoff 0.01. 191s 191s 191s Output File Names: 191s HA.unique.dist 191s 191s 191s mothur > cluster(method=furthest, column=HA.unique.dist, count=current, cutoff=0.01, precision=1000) 191s Using HA.count_table as input file for the count parameter. 191s 191s Using 2 processors. 191s unique 154 211 18 2 6 0 4 2 0 2 0 0 0 1 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 191s 0.001 155 161 28 5 3 4 2 4 0 0 1 0 1 0 1 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 191s 0.002 206 56 9 8 2 0 4 2 2 0 0 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 191s 0.003 236 26 4 2 1 1 0 2 2 1 0 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 191s 0.004 270 15 3 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 191s 0.005 272 7 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 191s 0.006 274 5 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 191s 0.007 274 5 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 191s 0.008 552 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 191s 0.009 592 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 191s It took 0 seconds to cluster 191s 191s Output File Names: 191s HA.unique.fn.list 191s 191s 191s mothur > summary.single(list=HA.unique.fn.list, calc=nseqs-sobs-chao, label=unique-0.001-0.003-0.005-0.008) 191s unique 191s 0.001 191s 0.003 191s 0.005 191s 0.008 191s 191s Output File Names: 191s HA.unique.fn.summary 191s 191s 191s mothur > heatmap.bin(scale=linear, label=unique-0.001-0.003) 191s Using HA.unique.fn.list as input file for the list parameter. 191s unique 191s 0.001 191s 0.003 191s 191s Output File Names: 191s HA.unique.fn.unique.heatmap.bin.svg 191s HA.unique.fn.0.001.heatmap.bin.svg 191s HA.unique.fn.0.003.heatmap.bin.svg 191s HA.unique.fn.0.004.heatmap.bin.svg 191s HA.unique.fn.0.005.heatmap.bin.svg 191s HA.unique.fn.0.006.heatmap.bin.svg 191s HA.unique.fn.0.007.heatmap.bin.svg 191s HA.unique.fn.0.008.heatmap.bin.svg 191s HA.unique.fn.0.009.heatmap.bin.svg 191s 191s 191s mothur > rarefaction.single(calc=sobs-chao, label=unique-0.001-0.003, freq=10) 191s Using HA.unique.fn.list as input file for the list parameter. 191s 191s Using 2 processors. 191s unique 191s 0.001 191s 0.003 191s 191s It took 0 secs to run rarefaction.single. 191s 191s Output File Names: 191s HA.unique.fn.rarefaction 191s HA.unique.fn.r_chao 191s 191s 191s mothur > quit() 191s 191s 191s It took 0 seconds to run 7 commands from test.batch batch file. 191s 191s Logfile : mothur.1770277537.logfile 191s 191s autopkgtest [07:45:38]: test run-unit-test: -----------------------] 196s run-unit-test PASS 196s autopkgtest [07:45:43]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 196s autopkgtest [07:45:43]: @@@@@@@@@@@@@@@@@@@@ summary 196s run-unit-test PASS