1s autopkgtest [07:36:39]: starting date and time: 2026-02-05 07:36:39+0000 1s autopkgtest [07:36:39]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 1s autopkgtest [07:36:39]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.x_r3cb7x/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade mira --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.42-2ubuntu5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-ppc64el-6.secgroup --name adt-resolute-ppc64el-mira-20260205-073638-juju-7f2275-prod-proposed-migration-environment-2-5d02031d-34cc-4c75-845f-d1e500abc257 --image adt/ubuntu-resolute-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 7s Creating nova instance adt-resolute-ppc64el-mira-20260205-073638-juju-7f2275-prod-proposed-migration-environment-2-5d02031d-34cc-4c75-845f-d1e500abc257 from image adt/ubuntu-resolute-ppc64el-server-20260205.img (UUID f866c950-0b62-4023-bac6-0f13279e15ed)... 121s autopkgtest [07:38:39]: testbed dpkg architecture: ppc64el 121s autopkgtest [07:38:39]: testbed apt version: 3.1.14 122s autopkgtest [07:38:40]: @@@@@@@@@@@@@@@@@@@@ test bed setup 122s autopkgtest [07:38:40]: testbed release detected to be: None 123s autopkgtest [07:38:41]: updating testbed package index (apt update) 123s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 123s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 123s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 123s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 123s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1719 kB] 124s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [228 kB] 124s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [35.4 kB] 124s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 124s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el Packages [261 kB] 124s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el Packages [1514 kB] 125s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse ppc64el Packages [21.9 kB] 125s Fetched 3910 kB in 2s (2217 kB/s) 126s Reading package lists... 126s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 126s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 126s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 126s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 127s Reading package lists... 127s Reading package lists... 128s Building dependency tree... 128s Reading state information... 128s Calculating upgrade... 128s The following packages will be upgraded: 128s libc-bin libc-gconv-modules-extra libc6 locales pollinate 128s python3-referencing sed 128s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 128s Need to get 8612 kB of archives. 128s After this operation, 0 B of additional disk space will be used. 128s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el sed ppc64el 4.9-2build3 [211 kB] 128s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libc-gconv-modules-extra ppc64el 2.42-2ubuntu5 [1448 kB] 129s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libc6 ppc64el 2.42-2ubuntu5 [1913 kB] 129s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libc-bin ppc64el 2.42-2ubuntu5 [748 kB] 129s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el locales all 2.42-2ubuntu5 [4255 kB] 129s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el pollinate all 4.33-4ubuntu5 [14.0 kB] 129s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 129s dpkg-preconfigure: unable to re-open stdin: No such file or directory 129s Fetched 8612 kB in 1s (10.1 MB/s) 130s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 130s Preparing to unpack .../sed_4.9-2build3_ppc64el.deb ... 130s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 130s Setting up sed (4.9-2build3) ... 130s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 130s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_ppc64el.deb ... 130s Unpacking libc-gconv-modules-extra:ppc64el (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 130s Setting up libc-gconv-modules-extra:ppc64el (2.42-2ubuntu5) ... 130s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 130s Preparing to unpack .../libc6_2.42-2ubuntu5_ppc64el.deb ... 130s Unpacking libc6:ppc64el (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 131s Setting up libc6:ppc64el (2.42-2ubuntu5) ... 131s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 131s Preparing to unpack .../libc-bin_2.42-2ubuntu5_ppc64el.deb ... 131s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 131s Setting up libc-bin (2.42-2ubuntu5) ... 131s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 131s Preparing to unpack .../locales_2.42-2ubuntu5_all.deb ... 131s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 132s Preparing to unpack .../pollinate_4.33-4ubuntu5_all.deb ... 132s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ... 132s Preparing to unpack .../python3-referencing_0.36.2-1ubuntu2_all.deb ... 132s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ... 132s Setting up locales (2.42-2ubuntu5) ... 132s Generating locales (this might take a while)... 134s en_US.UTF-8... done 134s Generation complete. 134s Setting up pollinate (4.33-4ubuntu5) ... 144s Setting up python3-referencing (0.36.2-1ubuntu2) ... 144s Processing triggers for man-db (2.13.1-1) ... 146s Processing triggers for install-info (7.2-5) ... 146s Processing triggers for systemd (259-1ubuntu3) ... 147s autopkgtest [07:39:05]: upgrading testbed (apt dist-upgrade and autopurge) 154s Reading package lists... 154s Building dependency tree... 154s Reading state information... 154s Calculating upgrade... 154s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 154s Reading package lists... 155s Building dependency tree... 155s Reading state information... 155s Solving dependencies... 155s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 155s autopkgtest [07:39:13]: rebooting testbed after setup commands that affected boot 196s autopkgtest [07:39:54]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:45:54 UTC 2026 200s autopkgtest [07:39:58]: @@@@@@@@@@@@@@@@@@@@ apt-source mira 205s Get:1 http://ftpmaster.internal/ubuntu resolute/universe mira 4.9.6-11build2 (dsc) [2441 B] 205s Get:2 http://ftpmaster.internal/ubuntu resolute/universe mira 4.9.6-11build2 (tar) [15.0 MB] 205s Get:3 http://ftpmaster.internal/ubuntu resolute/universe mira 4.9.6-11build2 (diff) [34.0 kB] 205s gpgv: Signature made Wed Aug 6 15:08:30 2025 UTC 205s gpgv: using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37 205s gpgv: Can't check signature: No public key 205s dpkg-source: warning: cannot verify inline signature for ./mira_4.9.6-11build2.dsc: no acceptable signature found 206s autopkgtest [07:40:04]: testing package mira version 4.9.6-11build2 207s autopkgtest [07:40:05]: build not needed 209s autopkgtest [07:40:07]: test run-unit-test: preparing testbed 209s Reading package lists... 210s Building dependency tree... 210s Reading state information... 210s Solving dependencies... 210s The following NEW packages will be installed: 210s libboost-filesystem1.88.0 libboost-thread1.88.0 libgomp1 mira-assembler 210s mira-doc mira-rfam-12s-rrna 210s 0 upgraded, 6 newly installed, 0 to remove and 0 not upgraded. 210s Need to get 16.7 MB of archives. 210s After this operation, 26.6 MB of additional disk space will be used. 210s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el libboost-filesystem1.88.0 ppc64el 1.88.0-1.4ubuntu3 [296 kB] 210s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el libboost-thread1.88.0 ppc64el 1.88.0-1.4ubuntu3 [276 kB] 210s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgomp1 ppc64el 15.2.0-12ubuntu1 [169 kB] 210s Get:4 http://ftpmaster.internal/ubuntu resolute/universe ppc64el mira-assembler ppc64el 4.9.6-11build2 [2726 kB] 210s Get:5 http://ftpmaster.internal/ubuntu resolute/universe ppc64el mira-rfam-12s-rrna all 4.9.6-11build2 [10.4 MB] 210s Get:6 http://ftpmaster.internal/ubuntu resolute/universe ppc64el mira-doc all 4.9.6-11build2 [2817 kB] 211s Fetched 16.7 MB in 1s (18.1 MB/s) 211s Selecting previously unselected package libboost-filesystem1.88.0:ppc64el. 211s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 211s Preparing to unpack .../libboost-filesystem1.88.0_1.88.0-1.4ubuntu3_ppc64el.deb ... 211s Unpacking libboost-filesystem1.88.0:ppc64el (1.88.0-1.4ubuntu3) ... 211s Selecting previously unselected package libboost-thread1.88.0:ppc64el. 211s Preparing to unpack .../libboost-thread1.88.0_1.88.0-1.4ubuntu3_ppc64el.deb ... 211s Unpacking libboost-thread1.88.0:ppc64el (1.88.0-1.4ubuntu3) ... 211s Selecting previously unselected package libgomp1:ppc64el. 211s Preparing to unpack .../libgomp1_15.2.0-12ubuntu1_ppc64el.deb ... 211s Unpacking libgomp1:ppc64el (15.2.0-12ubuntu1) ... 211s Selecting previously unselected package mira-assembler. 211s Preparing to unpack .../mira-assembler_4.9.6-11build2_ppc64el.deb ... 211s Unpacking mira-assembler (4.9.6-11build2) ... 211s Setting up libboost-filesystem1.88.0:ppc64el (1.88.0-1.4ubuntu3) ... 211s Setting up libboost-thread1.88.0:ppc64el (1.88.0-1.4ubuntu3) ... 211s Setting up libgomp1:ppc64el (15.2.0-12ubuntu1) ... 211s Setting up mira-assembler (4.9.6-11build2) ... 211s Selecting previously unselected package mira-rfam-12s-rrna. 211s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82061 files and directories currently installed.) 211s Preparing to unpack .../mira-rfam-12s-rrna_4.9.6-11build2_all.deb ... 211s Unpacking mira-rfam-12s-rrna (4.9.6-11build2) ... 211s Selecting previously unselected package mira-doc. 211s Preparing to unpack .../mira-doc_4.9.6-11build2_all.deb ... 211s Unpacking mira-doc (4.9.6-11build2) ... 211s Setting up mira-doc (4.9.6-11build2) ... 211s Setting up mira-rfam-12s-rrna (4.9.6-11build2) ... 211s readlink: /usr/bin/mira: Invalid argument 211s Will install rfam_rrna-21-12 with kmer size 21 as MIRA default rRNA filter in 211s /usr/bin/../share/mira/mhs 211s 211s Installing. This can take a minute or two, please be patient. 250s Done. 250s 250s MIRA can now use the functionality to filter for rRNA during assemblies. 250s MIRABAIT can now use the '-j rrna' option. 250s Processing triggers for man-db (2.13.1-1) ... 251s Processing triggers for libc-bin (2.42-2ubuntu5) ... 253s autopkgtest [07:40:51]: test run-unit-test: [----------------------- 277s autopkgtest [07:41:15]: test run-unit-test: -----------------------] 278s run-unit-test PASS 278s autopkgtest [07:41:16]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 281s autopkgtest [07:41:19]: @@@@@@@@@@@@@@@@@@@@ summary 281s run-unit-test PASS