0s autopkgtest [21:22:32]: starting date and time: 2025-10-18 21:22:32+0000 0s autopkgtest [21:22:32]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [21:22:32]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.s4_zsw29/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade kineticstools --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.13.7-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-ppc64el-2.secgroup --name adt-resolute-ppc64el-kineticstools-20251018-212232-juju-7f2275-prod-proposed-migration-environment-20-b288a1c6-143d-4cba-8a0b-ae3ff5a94e7a --image adt/ubuntu-resolute-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-ppc64el-kineticstools-20251018-212232-juju-7f2275-prod-proposed-migration-environment-20-b288a1c6-143d-4cba-8a0b-ae3ff5a94e7a from image adt/ubuntu-resolute-ppc64el-server-20251018.img (UUID 746a0a80-14f1-4bf7-89b6-cbb5ab236a4e)... 51s autopkgtest [21:23:23]: testbed dpkg architecture: ppc64el 51s autopkgtest [21:23:23]: testbed apt version: 3.1.8ubuntu1 51s autopkgtest [21:23:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup 51s autopkgtest [21:23:23]: testbed release detected to be: None 52s autopkgtest [21:23:24]: updating testbed package index (apt update) 52s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 53s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 53s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 53s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 53s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [18.2 kB] 53s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [431 kB] 53s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [54.3 kB] 53s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 53s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el Packages [96.8 kB] 53s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted ppc64el Packages [940 B] 53s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el Packages [295 kB] 53s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse ppc64el Packages [4660 B] 53s Fetched 989 kB in 1s (927 kB/s) 54s Reading package lists... 55s Failed to check for VM: Permission denied 55s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 55s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 55s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 55s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 56s Reading package lists... 56s Reading package lists... 56s Building dependency tree... 56s Reading state information... 57s Calculating upgrade... 57s The following packages will be upgraded: 57s gir1.2-girepository-2.0 libgirepository-1.0-1 libpython3-stdlib python3 57s python3-minimal 57s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 57s Need to get 185 kB of archives. 57s After this operation, 2048 B of additional disk space will be used. 57s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-minimal ppc64el 3.13.7-2 [27.8 kB] 57s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3 ppc64el 3.13.7-2 [23.9 kB] 57s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libpython3-stdlib ppc64el 3.13.7-2 [10.6 kB] 57s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgirepository-1.0-1 ppc64el 1.86.0-6 [97.4 kB] 57s Get:5 http://ftpmaster.internal/ubuntu resolute/main ppc64el gir1.2-girepository-2.0 ppc64el 1.86.0-6 [25.3 kB] 57s dpkg-preconfigure: unable to re-open stdin: No such file or directory 57s Fetched 185 kB in 0s (447 kB/s) 58s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76461 files and directories currently installed.) 58s Preparing to unpack .../python3-minimal_3.13.7-2_ppc64el.deb ... 58s Unpacking python3-minimal (3.13.7-2) over (3.13.7-1) ... 58s Setting up python3-minimal (3.13.7-2) ... 58s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76461 files and directories currently installed.) 58s Preparing to unpack .../python3_3.13.7-2_ppc64el.deb ... 58s running python pre-rtupdate hooks for python3.13... 58s Unpacking python3 (3.13.7-2) over (3.13.7-1) ... 58s Preparing to unpack .../libpython3-stdlib_3.13.7-2_ppc64el.deb ... 58s Unpacking libpython3-stdlib:ppc64el (3.13.7-2) over (3.13.7-1) ... 58s Preparing to unpack .../libgirepository-1.0-1_1.86.0-6_ppc64el.deb ... 58s Unpacking libgirepository-1.0-1:ppc64el (1.86.0-6) over (1.84.0-1) ... 58s Preparing to unpack .../gir1.2-girepository-2.0_1.86.0-6_ppc64el.deb ... 58s Unpacking gir1.2-girepository-2.0:ppc64el (1.86.0-6) over (1.84.0-1) ... 58s Setting up libgirepository-1.0-1:ppc64el (1.86.0-6) ... 58s Setting up libpython3-stdlib:ppc64el (3.13.7-2) ... 58s Setting up python3 (3.13.7-2) ... 58s running python rtupdate hooks for python3.13... 58s running python post-rtupdate hooks for python3.13... 58s Setting up gir1.2-girepository-2.0:ppc64el (1.86.0-6) ... 58s Processing triggers for man-db (2.13.1-1) ... 59s Processing triggers for libc-bin (2.42-0ubuntu3) ... 59s autopkgtest [21:23:31]: upgrading testbed (apt dist-upgrade and autopurge) 59s Reading package lists... 59s Building dependency tree... 59s Reading state information... 60s Calculating upgrade... 60s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 60s Reading package lists... 60s Building dependency tree... 60s Reading state information... 60s Solving dependencies... 60s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 63s autopkgtest [21:23:35]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:02:41 UTC 2025 63s autopkgtest [21:23:35]: @@@@@@@@@@@@@@@@@@@@ apt-source kineticstools 67s Get:1 http://ftpmaster.internal/ubuntu resolute/universe kineticstools 0.6.1+git20220223.1326a4d+dfsg-6 (dsc) [2783 B] 67s Get:2 http://ftpmaster.internal/ubuntu resolute/universe kineticstools 0.6.1+git20220223.1326a4d+dfsg-6 (tar) [21.8 MB] 67s Get:3 http://ftpmaster.internal/ubuntu resolute/universe kineticstools 0.6.1+git20220223.1326a4d+dfsg-6 (diff) [11.1 kB] 67s gpgv: Signature made Sun Feb 9 11:20:52 2025 UTC 67s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 67s gpgv: issuer "tchet@debian.org" 67s gpgv: Can't check signature: No public key 67s dpkg-source: warning: cannot verify inline signature for ./kineticstools_0.6.1+git20220223.1326a4d+dfsg-6.dsc: no acceptable signature found 69s autopkgtest [21:23:41]: testing package kineticstools version 0.6.1+git20220223.1326a4d+dfsg-6 69s autopkgtest [21:23:41]: build not needed 70s autopkgtest [21:23:42]: test command1: preparing testbed 70s Reading package lists... 71s Building dependency tree... 71s Reading state information... 71s Solving dependencies... 71s The following NEW packages will be installed: 71s fontconfig-config fonts-urw-base35 hdf5-tools kineticstools 71s kineticstools-data libaec0 libbigwig0t64 libblas3 libcairo2 libdeflate0 71s libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3 71s libharfbuzz0b libhdf5-310 libhdf5-hl-310 libhts3t64 libhtscodecs2 71s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery 71s libjs-jquery-hotkeys libjs-jquery-isonscreen libjs-jquery-metadata 71s libjs-jquery-tablesorter libjs-jquery-throttle-debounce liblapack3 71s liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libsz2 71s libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 71s libxrender1 python3-avro python3-biopython python3-cairo 71s python3-charset-normalizer python3-coverage python3-cram python3-decorator 71s python3-execnet python3-freetype python3-iniconfig python3-iso8601 71s python3-kineticstools python3-numpy python3-numpy-dev python3-packaging 71s python3-pbcommand python3-pbcore python3-pil python3-pluggy python3-pybigwig 71s python3-pysam python3-pytest python3-pytest-cov python3-pytest-xdist 71s python3-pytz python3-reportlab python3-rlpycairo python3-scipy python3-tz 71s sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 71s 0 upgraded, 80 newly installed, 0 to remove and 0 not upgraded. 71s Need to get 80.0 MB of archives. 71s After this operation, 260 MB of additional disk space will be used. 71s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy-dev ppc64el 1:2.2.4+ds-1ubuntu1 [153 kB] 71s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el libblas3 ppc64el 3.12.1-6build1 [291 kB] 71s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgfortran5 ppc64el 15.2.0-5ubuntu1 [620 kB] 72s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblapack3 ppc64el 3.12.1-6build1 [2960 kB] 72s Get:5 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy ppc64el 1:2.2.4+ds-1ubuntu1 [4887 kB] 73s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build1 [15.8 kB] 73s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el x11-common all 1:7.7+24ubuntu1 [22.4 kB] 73s Get:8 http://ftpmaster.internal/ubuntu resolute/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 73s Get:9 http://ftpmaster.internal/ubuntu resolute/main ppc64el xfonts-utils ppc64el 1:7.7+7 [114 kB] 73s Get:10 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB] 74s Get:11 http://ftpmaster.internal/ubuntu resolute/main ppc64el fontconfig-config ppc64el 2.15.0-2.3ubuntu1 [38.1 kB] 74s Get:12 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libaec0 ppc64el 1.1.3-1 [30.1 kB] 74s Get:13 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libsz2 ppc64el 1.1.3-1 [5566 B] 74s Get:14 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libhdf5-310 ppc64el 1.14.5+repack-3build1 [1516 kB] 74s Get:15 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libhdf5-hl-310 ppc64el 1.14.5+repack-3build1 [74.6 kB] 74s Get:16 http://ftpmaster.internal/ubuntu resolute/universe ppc64el hdf5-tools ppc64el 1.14.5+repack-3build1 [401 kB] 74s Get:17 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-iso8601 all 2.1.0-2 [9136 B] 74s Get:18 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-pytz all 2025.2-3 [163 kB] 74s Get:19 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-tz all 2025.2-3 [1866 B] 74s Get:20 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-avro all 1.12.0+dfsg-1 [75.3 kB] 74s Get:21 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pbcommand all 2.1.1+git20231020.28d1635-1 [104 kB] 74s Get:22 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-charset-normalizer ppc64el 3.4.2-1 [132 kB] 74s Get:23 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgomp1 ppc64el 15.2.0-5ubuntu1 [169 kB] 74s Get:24 http://ftpmaster.internal/ubuntu resolute/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 74s Get:25 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-4ubuntu2 [215 kB] 74s Get:26 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 74s Get:27 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblcms2-2 ppc64el 2.16-2 [243 kB] 74s Get:28 http://ftpmaster.internal/ubuntu resolute/main ppc64el libopenjp2-7 ppc64el 2.5.3-2.1 [251 kB] 74s Get:29 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 74s Get:30 http://ftpmaster.internal/ubuntu resolute/main ppc64el libharfbuzz0b ppc64el 10.2.0-1 [598 kB] 74s Get:31 http://ftpmaster.internal/ubuntu resolute/main ppc64el libraqm0 ppc64el 0.10.3-1 [19.6 kB] 74s Get:32 http://ftpmaster.internal/ubuntu resolute/main ppc64el libdeflate0 ppc64el 1.23-2 [63.3 kB] 74s Get:33 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB] 74s Get:34 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu1 [298 kB] 74s Get:35 http://ftpmaster.internal/ubuntu resolute/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1 [22.3 kB] 74s Get:36 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebp7 ppc64el 1.5.0-0.1 [315 kB] 74s Get:37 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtiff6 ppc64el 4.7.0-3ubuntu3 [307 kB] 74s Get:38 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebpdemux2 ppc64el 1.5.0-0.1 [14.6 kB] 74s Get:39 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebpmux3 ppc64el 1.5.0-0.1 [31.1 kB] 74s Get:40 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-pil ppc64el 11.3.0-1ubuntu1 [633 kB] 74s Get:41 http://ftpmaster.internal/ubuntu resolute/main ppc64el libfontconfig1 ppc64el 2.15.0-2.3ubuntu1 [188 kB] 74s Get:42 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpixman-1-0 ppc64el 0.44.0-3 [334 kB] 74s Get:43 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-render0 ppc64el 1.17.0-2build1 [17.2 kB] 74s Get:44 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-shm0 ppc64el 1.17.0-2build1 [6078 B] 74s Get:45 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxrender1 ppc64el 1:0.9.12-1 [23.0 kB] 74s Get:46 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcairo2 ppc64el 1.18.4-1build1 [759 kB] 74s Get:47 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-cairo ppc64el 1.27.0-2 [129 kB] 74s Get:48 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-freetype all 2.5.1-1 [92.3 kB] 74s Get:49 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B] 74s Get:50 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-reportlab all 4.4.2-1 [1145 kB] 74s Get:51 http://ftpmaster.internal/ubuntu resolute/main ppc64el sgml-base all 1.31+nmu1 [11.0 kB] 74s Get:52 http://ftpmaster.internal/ubuntu resolute/main ppc64el xml-core all 0.19 [20.3 kB] 74s Get:53 http://ftpmaster.internal/ubuntu resolute/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB] 74s Get:54 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-biopython ppc64el 1.85+dfsg-4 [1764 kB] 75s Get:55 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libhtscodecs2 ppc64el 1.6.1-2 [113 kB] 75s Get:56 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libhts3t64 ppc64el 1.21+ds-1 [585 kB] 75s Get:57 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pysam ppc64el 0.23.0+ds-1build1 [4039 kB] 75s Get:58 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pbcore all 2.1.2+dfsg-11 [2837 kB] 75s Get:59 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libbigwig0t64 ppc64el 0.4.7+dfsg-3.1build2 [38.0 kB] 75s Get:60 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pybigwig ppc64el 0.3.23+dfsg-1build3 [44.2 kB] 75s Get:61 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-decorator all 5.2.1-2 [28.1 kB] 75s Get:62 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-scipy ppc64el 1.15.3-1 [18.2 MB] 75s Get:63 http://ftpmaster.internal/ubuntu resolute/universe ppc64el kineticstools-data all 0.6.1+git20220223.1326a4d+dfsg-6 [21.7 MB] 76s Get:64 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-kineticstools ppc64el 0.6.1+git20220223.1326a4d+dfsg-6 [48.3 kB] 76s Get:65 http://ftpmaster.internal/ubuntu resolute/universe ppc64el kineticstools all 0.6.1+git20220223.1326a4d+dfsg-6 [12.9 kB] 76s Get:66 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 76s Get:67 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libjs-jquery-metadata all 12-4 [6582 B] 76s Get:68 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [192 kB] 76s Get:69 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.5 kB] 76s Get:70 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-coverage ppc64el 7.8.2+dfsg1-1 [158 kB] 76s Get:71 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-cram all 0.7-6 [17.8 kB] 76s Get:72 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-execnet all 2.1.1-1 [33.4 kB] 76s Get:73 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B] 76s Get:74 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-packaging all 25.0-1 [52.8 kB] 76s Get:75 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pluggy all 1.5.0-1 [21.0 kB] 76s Get:76 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pytest all 8.3.5-2 [252 kB] 76s Get:77 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libjs-jquery-hotkeys all 0.2.0-1 [13.3 kB] 76s Get:78 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libjs-jquery-isonscreen all 1.2.0-1.1 [3244 B] 76s Get:79 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pytest-cov all 5.0.0-1 [21.3 kB] 76s Get:80 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pytest-xdist all 3.6.1-1 [33.8 kB] 76s Fetched 80.0 MB in 5s (14.9 MB/s) 76s Selecting previously unselected package python3-numpy-dev:ppc64el. 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76461 files and directories currently installed.) 77s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_ppc64el.deb ... 77s Unpacking python3-numpy-dev:ppc64el (1:2.2.4+ds-1ubuntu1) ... 77s Selecting previously unselected package libblas3:ppc64el. 77s Preparing to unpack .../01-libblas3_3.12.1-6build1_ppc64el.deb ... 77s Unpacking libblas3:ppc64el (3.12.1-6build1) ... 77s Selecting previously unselected package libgfortran5:ppc64el. 77s Preparing to unpack .../02-libgfortran5_15.2.0-5ubuntu1_ppc64el.deb ... 77s Unpacking libgfortran5:ppc64el (15.2.0-5ubuntu1) ... 77s Selecting previously unselected package liblapack3:ppc64el. 77s Preparing to unpack .../03-liblapack3_3.12.1-6build1_ppc64el.deb ... 77s Unpacking liblapack3:ppc64el (3.12.1-6build1) ... 77s Selecting previously unselected package python3-numpy. 77s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_ppc64el.deb ... 77s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 77s Selecting previously unselected package libfontenc1:ppc64el. 77s Preparing to unpack .../05-libfontenc1_1%3a1.1.8-1build1_ppc64el.deb ... 77s Unpacking libfontenc1:ppc64el (1:1.1.8-1build1) ... 77s Selecting previously unselected package x11-common. 77s Preparing to unpack .../06-x11-common_1%3a7.7+24ubuntu1_all.deb ... 77s Unpacking x11-common (1:7.7+24ubuntu1) ... 77s Selecting previously unselected package xfonts-encodings. 77s Preparing to unpack .../07-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 77s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 77s Selecting previously unselected package xfonts-utils. 77s Preparing to unpack .../08-xfonts-utils_1%3a7.7+7_ppc64el.deb ... 77s Unpacking xfonts-utils (1:7.7+7) ... 77s Selecting previously unselected package fonts-urw-base35. 77s Preparing to unpack .../09-fonts-urw-base35_20200910-8_all.deb ... 77s Unpacking fonts-urw-base35 (20200910-8) ... 77s Selecting previously unselected package fontconfig-config. 77s Preparing to unpack .../10-fontconfig-config_2.15.0-2.3ubuntu1_ppc64el.deb ... 77s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 77s Selecting previously unselected package libaec0:ppc64el. 77s Preparing to unpack .../11-libaec0_1.1.3-1_ppc64el.deb ... 77s Unpacking libaec0:ppc64el (1.1.3-1) ... 77s Selecting previously unselected package libsz2:ppc64el. 77s Preparing to unpack .../12-libsz2_1.1.3-1_ppc64el.deb ... 77s Unpacking libsz2:ppc64el (1.1.3-1) ... 77s Selecting previously unselected package libhdf5-310:ppc64el. 77s Preparing to unpack .../13-libhdf5-310_1.14.5+repack-3build1_ppc64el.deb ... 77s Unpacking libhdf5-310:ppc64el (1.14.5+repack-3build1) ... 77s Selecting previously unselected package libhdf5-hl-310:ppc64el. 77s Preparing to unpack .../14-libhdf5-hl-310_1.14.5+repack-3build1_ppc64el.deb ... 77s Unpacking libhdf5-hl-310:ppc64el (1.14.5+repack-3build1) ... 77s Selecting previously unselected package hdf5-tools. 77s Preparing to unpack .../15-hdf5-tools_1.14.5+repack-3build1_ppc64el.deb ... 77s Unpacking hdf5-tools (1.14.5+repack-3build1) ... 77s Selecting previously unselected package python3-iso8601. 77s Preparing to unpack .../16-python3-iso8601_2.1.0-2_all.deb ... 77s Unpacking python3-iso8601 (2.1.0-2) ... 78s Selecting previously unselected package python3-pytz. 78s Preparing to unpack .../17-python3-pytz_2025.2-3_all.deb ... 78s Unpacking python3-pytz (2025.2-3) ... 78s Selecting previously unselected package python3-tz. 78s Preparing to unpack .../18-python3-tz_2025.2-3_all.deb ... 78s Unpacking python3-tz (2025.2-3) ... 78s Selecting previously unselected package python3-avro. 78s Preparing to unpack .../19-python3-avro_1.12.0+dfsg-1_all.deb ... 78s Unpacking python3-avro (1.12.0+dfsg-1) ... 78s Selecting previously unselected package python3-pbcommand. 78s Preparing to unpack .../20-python3-pbcommand_2.1.1+git20231020.28d1635-1_all.deb ... 78s Unpacking python3-pbcommand (2.1.1+git20231020.28d1635-1) ... 78s Selecting previously unselected package python3-charset-normalizer. 78s Preparing to unpack .../21-python3-charset-normalizer_3.4.2-1_ppc64el.deb ... 78s Unpacking python3-charset-normalizer (3.4.2-1) ... 78s Selecting previously unselected package libgomp1:ppc64el. 78s Preparing to unpack .../22-libgomp1_15.2.0-5ubuntu1_ppc64el.deb ... 78s Unpacking libgomp1:ppc64el (15.2.0-5ubuntu1) ... 78s Selecting previously unselected package libimagequant0:ppc64el. 78s Preparing to unpack .../23-libimagequant0_2.18.0-1build1_ppc64el.deb ... 78s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 78s Selecting previously unselected package libjpeg-turbo8:ppc64el. 78s Preparing to unpack .../24-libjpeg-turbo8_2.1.5-4ubuntu2_ppc64el.deb ... 78s Unpacking libjpeg-turbo8:ppc64el (2.1.5-4ubuntu2) ... 78s Selecting previously unselected package libjpeg8:ppc64el. 78s Preparing to unpack .../25-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 78s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 78s Selecting previously unselected package liblcms2-2:ppc64el. 78s Preparing to unpack .../26-liblcms2-2_2.16-2_ppc64el.deb ... 78s Unpacking liblcms2-2:ppc64el (2.16-2) ... 78s Selecting previously unselected package libopenjp2-7:ppc64el. 78s Preparing to unpack .../27-libopenjp2-7_2.5.3-2.1_ppc64el.deb ... 78s Unpacking libopenjp2-7:ppc64el (2.5.3-2.1) ... 78s Selecting previously unselected package libgraphite2-3:ppc64el. 78s Preparing to unpack .../28-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 78s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 78s Selecting previously unselected package libharfbuzz0b:ppc64el. 78s Preparing to unpack .../29-libharfbuzz0b_10.2.0-1_ppc64el.deb ... 78s Unpacking libharfbuzz0b:ppc64el (10.2.0-1) ... 78s Selecting previously unselected package libraqm0:ppc64el. 78s Preparing to unpack .../30-libraqm0_0.10.3-1_ppc64el.deb ... 78s Unpacking libraqm0:ppc64el (0.10.3-1) ... 78s Selecting previously unselected package libdeflate0:ppc64el. 78s Preparing to unpack .../31-libdeflate0_1.23-2_ppc64el.deb ... 78s Unpacking libdeflate0:ppc64el (1.23-2) ... 78s Selecting previously unselected package libjbig0:ppc64el. 78s Preparing to unpack .../32-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ... 78s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ... 78s Selecting previously unselected package liblerc4:ppc64el. 78s Preparing to unpack .../33-liblerc4_4.0.0+ds-5ubuntu1_ppc64el.deb ... 78s Unpacking liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 78s Selecting previously unselected package libsharpyuv0:ppc64el. 78s Preparing to unpack .../34-libsharpyuv0_1.5.0-0.1_ppc64el.deb ... 78s Unpacking libsharpyuv0:ppc64el (1.5.0-0.1) ... 78s Selecting previously unselected package libwebp7:ppc64el. 78s Preparing to unpack .../35-libwebp7_1.5.0-0.1_ppc64el.deb ... 78s Unpacking libwebp7:ppc64el (1.5.0-0.1) ... 78s Selecting previously unselected package libtiff6:ppc64el. 78s Preparing to unpack .../36-libtiff6_4.7.0-3ubuntu3_ppc64el.deb ... 78s Unpacking libtiff6:ppc64el (4.7.0-3ubuntu3) ... 78s Selecting previously unselected package libwebpdemux2:ppc64el. 78s Preparing to unpack .../37-libwebpdemux2_1.5.0-0.1_ppc64el.deb ... 78s Unpacking libwebpdemux2:ppc64el (1.5.0-0.1) ... 78s Selecting previously unselected package libwebpmux3:ppc64el. 78s Preparing to unpack .../38-libwebpmux3_1.5.0-0.1_ppc64el.deb ... 78s Unpacking libwebpmux3:ppc64el (1.5.0-0.1) ... 78s Selecting previously unselected package python3-pil:ppc64el. 78s Preparing to unpack .../39-python3-pil_11.3.0-1ubuntu1_ppc64el.deb ... 78s Unpacking python3-pil:ppc64el (11.3.0-1ubuntu1) ... 78s Selecting previously unselected package libfontconfig1:ppc64el. 78s Preparing to unpack .../40-libfontconfig1_2.15.0-2.3ubuntu1_ppc64el.deb ... 78s Unpacking libfontconfig1:ppc64el (2.15.0-2.3ubuntu1) ... 78s Selecting previously unselected package libpixman-1-0:ppc64el. 78s Preparing to unpack .../41-libpixman-1-0_0.44.0-3_ppc64el.deb ... 78s Unpacking libpixman-1-0:ppc64el (0.44.0-3) ... 78s Selecting previously unselected package libxcb-render0:ppc64el. 78s Preparing to unpack .../42-libxcb-render0_1.17.0-2build1_ppc64el.deb ... 78s Unpacking libxcb-render0:ppc64el (1.17.0-2build1) ... 78s Selecting previously unselected package libxcb-shm0:ppc64el. 78s Preparing to unpack .../43-libxcb-shm0_1.17.0-2build1_ppc64el.deb ... 78s Unpacking libxcb-shm0:ppc64el (1.17.0-2build1) ... 78s Selecting previously unselected package libxrender1:ppc64el. 78s Preparing to unpack .../44-libxrender1_1%3a0.9.12-1_ppc64el.deb ... 78s Unpacking libxrender1:ppc64el (1:0.9.12-1) ... 78s Selecting previously unselected package libcairo2:ppc64el. 78s Preparing to unpack .../45-libcairo2_1.18.4-1build1_ppc64el.deb ... 78s Unpacking libcairo2:ppc64el (1.18.4-1build1) ... 78s Selecting previously unselected package python3-cairo. 78s Preparing to unpack .../46-python3-cairo_1.27.0-2_ppc64el.deb ... 78s Unpacking python3-cairo (1.27.0-2) ... 78s Selecting previously unselected package python3-freetype. 78s Preparing to unpack .../47-python3-freetype_2.5.1-1_all.deb ... 78s Unpacking python3-freetype (2.5.1-1) ... 78s Selecting previously unselected package python3-rlpycairo. 78s Preparing to unpack .../48-python3-rlpycairo_0.3.0-3_all.deb ... 78s Unpacking python3-rlpycairo (0.3.0-3) ... 78s Selecting previously unselected package python3-reportlab. 78s Preparing to unpack .../49-python3-reportlab_4.4.2-1_all.deb ... 78s Unpacking python3-reportlab (4.4.2-1) ... 78s Selecting previously unselected package sgml-base. 78s Preparing to unpack .../50-sgml-base_1.31+nmu1_all.deb ... 78s Unpacking sgml-base (1.31+nmu1) ... 78s Selecting previously unselected package xml-core. 78s Preparing to unpack .../51-xml-core_0.19_all.deb ... 78s Unpacking xml-core (0.19) ... 78s Selecting previously unselected package w3c-sgml-lib. 78s Preparing to unpack .../52-w3c-sgml-lib_1.3-3_all.deb ... 78s Unpacking w3c-sgml-lib (1.3-3) ... 78s Selecting previously unselected package python3-biopython. 78s Preparing to unpack .../53-python3-biopython_1.85+dfsg-4_ppc64el.deb ... 78s Unpacking python3-biopython (1.85+dfsg-4) ... 79s Selecting previously unselected package libhtscodecs2:ppc64el. 79s Preparing to unpack .../54-libhtscodecs2_1.6.1-2_ppc64el.deb ... 79s Unpacking libhtscodecs2:ppc64el (1.6.1-2) ... 79s Selecting previously unselected package libhts3t64:ppc64el. 79s Preparing to unpack .../55-libhts3t64_1.21+ds-1_ppc64el.deb ... 79s Unpacking libhts3t64:ppc64el (1.21+ds-1) ... 79s Selecting previously unselected package python3-pysam. 79s Preparing to unpack .../56-python3-pysam_0.23.0+ds-1build1_ppc64el.deb ... 79s Unpacking python3-pysam (0.23.0+ds-1build1) ... 79s Selecting previously unselected package python3-pbcore. 79s Preparing to unpack .../57-python3-pbcore_2.1.2+dfsg-11_all.deb ... 79s Unpacking python3-pbcore (2.1.2+dfsg-11) ... 79s Selecting previously unselected package libbigwig0t64:ppc64el. 79s Preparing to unpack .../58-libbigwig0t64_0.4.7+dfsg-3.1build2_ppc64el.deb ... 79s Unpacking libbigwig0t64:ppc64el (0.4.7+dfsg-3.1build2) ... 79s Selecting previously unselected package python3-pybigwig. 79s Preparing to unpack .../59-python3-pybigwig_0.3.23+dfsg-1build3_ppc64el.deb ... 79s Unpacking python3-pybigwig (0.3.23+dfsg-1build3) ... 79s Selecting previously unselected package python3-decorator. 79s Preparing to unpack .../60-python3-decorator_5.2.1-2_all.deb ... 79s Unpacking python3-decorator (5.2.1-2) ... 79s Selecting previously unselected package python3-scipy. 79s Preparing to unpack .../61-python3-scipy_1.15.3-1_ppc64el.deb ... 79s Unpacking python3-scipy (1.15.3-1) ... 79s Selecting previously unselected package kineticstools-data. 79s Preparing to unpack .../62-kineticstools-data_0.6.1+git20220223.1326a4d+dfsg-6_all.deb ... 79s Unpacking kineticstools-data (0.6.1+git20220223.1326a4d+dfsg-6) ... 79s Selecting previously unselected package python3-kineticstools. 79s Preparing to unpack .../63-python3-kineticstools_0.6.1+git20220223.1326a4d+dfsg-6_ppc64el.deb ... 79s Unpacking python3-kineticstools (0.6.1+git20220223.1326a4d+dfsg-6) ... 79s Selecting previously unselected package kineticstools. 79s Preparing to unpack .../64-kineticstools_0.6.1+git20220223.1326a4d+dfsg-6_all.deb ... 79s Unpacking kineticstools (0.6.1+git20220223.1326a4d+dfsg-6) ... 79s Selecting previously unselected package libjs-jquery. 79s Preparing to unpack .../65-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 79s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 79s Selecting previously unselected package libjs-jquery-metadata. 79s Preparing to unpack .../66-libjs-jquery-metadata_12-4_all.deb ... 79s Unpacking libjs-jquery-metadata (12-4) ... 80s Selecting previously unselected package libjs-jquery-tablesorter. 80s Preparing to unpack .../67-libjs-jquery-tablesorter_1%3a2.31.3+dfsg1-4_all.deb ... 80s Unpacking libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 80s Selecting previously unselected package libjs-jquery-throttle-debounce. 80s Preparing to unpack .../68-libjs-jquery-throttle-debounce_1.1+dfsg.1-2_all.deb ... 80s Unpacking libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... 80s Selecting previously unselected package python3-coverage. 80s Preparing to unpack .../69-python3-coverage_7.8.2+dfsg1-1_ppc64el.deb ... 80s Unpacking python3-coverage (7.8.2+dfsg1-1) ... 80s Selecting previously unselected package python3-cram. 80s Preparing to unpack .../70-python3-cram_0.7-6_all.deb ... 80s Unpacking python3-cram (0.7-6) ... 80s Selecting previously unselected package python3-execnet. 80s Preparing to unpack .../71-python3-execnet_2.1.1-1_all.deb ... 80s Unpacking python3-execnet (2.1.1-1) ... 80s Selecting previously unselected package python3-iniconfig. 80s Preparing to unpack .../72-python3-iniconfig_1.1.1-2_all.deb ... 80s Unpacking python3-iniconfig (1.1.1-2) ... 80s Selecting previously unselected package python3-packaging. 80s Preparing to unpack .../73-python3-packaging_25.0-1_all.deb ... 80s Unpacking python3-packaging (25.0-1) ... 80s Selecting previously unselected package python3-pluggy. 80s Preparing to unpack .../74-python3-pluggy_1.5.0-1_all.deb ... 80s Unpacking python3-pluggy (1.5.0-1) ... 80s Selecting previously unselected package python3-pytest. 80s Preparing to unpack .../75-python3-pytest_8.3.5-2_all.deb ... 80s Unpacking python3-pytest (8.3.5-2) ... 80s Selecting previously unselected package libjs-jquery-hotkeys. 80s Preparing to unpack .../76-libjs-jquery-hotkeys_0.2.0-1_all.deb ... 80s Unpacking libjs-jquery-hotkeys (0.2.0-1) ... 80s Selecting previously unselected package libjs-jquery-isonscreen. 80s Preparing to unpack .../77-libjs-jquery-isonscreen_1.2.0-1.1_all.deb ... 80s Unpacking libjs-jquery-isonscreen (1.2.0-1.1) ... 80s Selecting previously unselected package python3-pytest-cov. 80s Preparing to unpack .../78-python3-pytest-cov_5.0.0-1_all.deb ... 80s Unpacking python3-pytest-cov (5.0.0-1) ... 80s Selecting previously unselected package python3-pytest-xdist. 80s Preparing to unpack .../79-python3-pytest-xdist_3.6.1-1_all.deb ... 80s Unpacking python3-pytest-xdist (3.6.1-1) ... 80s Setting up libhtscodecs2:ppc64el (1.6.1-2) ... 80s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 80s Setting up liblcms2-2:ppc64el (2.16-2) ... 80s Setting up python3-iniconfig (1.1.1-2) ... 80s Setting up libpixman-1-0:ppc64el (0.44.0-3) ... 80s Setting up libsharpyuv0:ppc64el (1.5.0-0.1) ... 80s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 80s Setting up libxrender1:ppc64el (1:0.9.12-1) ... 80s Setting up libxcb-render0:ppc64el (1.17.0-2build1) ... 80s Setting up python3-charset-normalizer (3.4.2-1) ... 80s Setting up x11-common (1:7.7+24ubuntu1) ... 80s Setting up libdeflate0:ppc64el (1.23-2) ... 80s Setting up python3-coverage (7.8.2+dfsg1-1) ... 81s Setting up python3-pytz (2025.2-3) ... 81s Setting up libxcb-shm0:ppc64el (1.17.0-2build1) ... 81s Setting up kineticstools-data (0.6.1+git20220223.1326a4d+dfsg-6) ... 81s Setting up libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... 81s Setting up libgomp1:ppc64el (15.2.0-5ubuntu1) ... 81s Setting up python3-freetype (2.5.1-1) ... 81s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ... 81s Setting up libaec0:ppc64el (1.1.3-1) ... 81s Setting up python3-tz (2025.2-3) ... 81s Setting up python3-decorator (5.2.1-2) ... 81s Setting up libfontenc1:ppc64el (1:1.1.8-1build1) ... 81s Setting up libblas3:ppc64el (3.12.1-6build1) ... 81s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 81s Setting up python3-packaging (25.0-1) ... 81s Setting up python3-iso8601 (2.1.0-2) ... 81s Setting up python3-avro (1.12.0+dfsg-1) ... 81s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 81s Setting up libimagequant0:ppc64el (2.18.0-1build1) ... 81s Setting up python3-numpy-dev:ppc64el (1:2.2.4+ds-1ubuntu1) ... 81s Setting up libjpeg-turbo8:ppc64el (2.1.5-4ubuntu2) ... 81s Setting up libgfortran5:ppc64el (15.2.0-5ubuntu1) ... 81s Setting up python3-pluggy (1.5.0-1) ... 81s Setting up libwebp7:ppc64el (1.5.0-0.1) ... 81s Setting up python3-cram (0.7-6) ... 82s Setting up libhts3t64:ppc64el (1.21+ds-1) ... 82s Setting up libopenjp2-7:ppc64el (2.5.3-2.1) ... 82s Setting up libharfbuzz0b:ppc64el (10.2.0-1) ... 82s Setting up libbigwig0t64:ppc64el (0.4.7+dfsg-3.1build2) ... 82s Setting up sgml-base (1.31+nmu1) ... 82s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 82s Setting up libjs-jquery-hotkeys (0.2.0-1) ... 82s Setting up python3-execnet (2.1.1-1) ... 82s Setting up libwebpmux3:ppc64el (1.5.0-0.1) ... 82s Setting up libsz2:ppc64el (1.1.3-1) ... 82s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 82s Setting up liblapack3:ppc64el (3.12.1-6build1) ... 82s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 82s Setting up python3-pysam (0.23.0+ds-1build1) ... 82s Setting up python3-pytest (8.3.5-2) ... 82s Setting up libwebpdemux2:ppc64el (1.5.0-0.1) ... 82s Setting up xfonts-utils (1:7.7+7) ... 82s Setting up libjs-jquery-metadata (12-4) ... 82s Setting up libraqm0:ppc64el (0.10.3-1) ... 82s Setting up libjs-jquery-isonscreen (1.2.0-1.1) ... 82s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 84s Setting up python3-pybigwig (0.3.23+dfsg-1build3) ... 84s Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 84s Setting up libhdf5-310:ppc64el (1.14.5+repack-3build1) ... 84s Setting up libtiff6:ppc64el (4.7.0-3ubuntu3) ... 84s Setting up xml-core (0.19) ... 84s Setting up libhdf5-hl-310:ppc64el (1.14.5+repack-3build1) ... 84s Setting up python3-scipy (1.15.3-1) ... 88s Setting up python3-pytest-xdist (3.6.1-1) ... 88s Setting up python3-pytest-cov (5.0.0-1) ... 88s Setting up fonts-urw-base35 (20200910-8) ... 88s Setting up hdf5-tools (1.14.5+repack-3build1) ... 88s Setting up python3-pil:ppc64el (11.3.0-1ubuntu1) ... 89s Setting up python3-pbcommand (2.1.1+git20231020.28d1635-1) ... 89s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 89s Setting up libfontconfig1:ppc64el (2.15.0-2.3ubuntu1) ... 89s Setting up libcairo2:ppc64el (1.18.4-1build1) ... 89s Setting up python3-cairo (1.27.0-2) ... 89s Setting up python3-rlpycairo (0.3.0-3) ... 89s Setting up python3-reportlab (4.4.2-1) ... 90s Processing triggers for libc-bin (2.42-0ubuntu3) ... 90s Processing triggers for man-db (2.13.1-1) ... 91s Processing triggers for sgml-base (1.31+nmu1) ... 91s Setting up w3c-sgml-lib (1.3-3) ... 121s Setting up python3-biopython (1.85+dfsg-4) ... 122s Setting up python3-pbcore (2.1.2+dfsg-11) ... 122s Setting up python3-kineticstools (0.6.1+git20220223.1326a4d+dfsg-6) ... 122s Setting up kineticstools (0.6.1+git20220223.1326a4d+dfsg-6) ... 124s autopkgtest [21:24:36]: test command1: cp -r Makefile test $AUTOPKGTEST_TMP/ && cd $AUTOPKGTEST_TMP && ln -s /usr/share/kineticstools kineticsTools && make -k py-tests 124s autopkgtest [21:24:36]: test command1: [----------------------- 124s # pytest --cov=kineticsTools # does not quite work since we run in test/ dir. 124s cd test/; pytest-3 -s -v -p no:warnings --durations=20 --junitxml=../nosetests.xml test_*.py 124s ============================= test session starts ============================== 124s platform linux -- Python 3.13.7, pytest-8.3.5, pluggy-1.5.0 -- /usr/bin/python3 124s cachedir: .pytest_cache 124s rootdir: /tmp/autopkgtest.HujEA9/autopkgtest_tmp/test 124s plugins: xdist-3.6.1, typeguard-4.4.2, cov-5.0.0 124s collecting ... /tmp/autopkgtest.HujEA9/autopkgtest_tmp/test/test_ReferenceUtils.py:17: PytestUnknownMarkWarning: Unknown pytest.mark.internal_data - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 124s @pytest.mark.internal_data 124s /tmp/autopkgtest.HujEA9/autopkgtest_tmp/test/test_gather_bigwig.py:50: PytestUnknownMarkWarning: Unknown pytest.mark.pybigwig - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 124s @pytest.mark.pybigwig 124s /tmp/autopkgtest.HujEA9/autopkgtest_tmp/test/test_integration.py:29: PytestUnknownMarkWarning: Unknown pytest.mark.internal_data - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 124s @pytest.mark.internal_data 124s /tmp/autopkgtest.HujEA9/autopkgtest_tmp/test/test_ipdModel.py:13: PytestUnknownMarkWarning: Unknown pytest.mark.internal_data - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 124s @pytest.mark.internal_data 124s /tmp/autopkgtest.HujEA9/autopkgtest_tmp/test/test_outputs.py:21: PytestUnknownMarkWarning: Unknown pytest.mark.internal_data - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 124s @pytest.mark.internal_data 124s /tmp/autopkgtest.HujEA9/autopkgtest_tmp/test/test_summarize_modifications.py:12: PytestUnknownMarkWarning: Unknown pytest.mark.internal_data - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 124s @pytest.mark.internal_data 124s collected 19 items 124s 124s test_ReferenceUtils.py::TestReferenceUtils::test_bam SKIPPED (need a...) 124s test_ReferenceUtils.py::TestReferenceUtils::test_dataset SKIPPED (ne...) 124s test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow SKIPPED 124s test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows SKIPPED 124s test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks SKIPPED 124s test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig PASSED 125s test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli PASSED 125s test_integration.py::TestKineticsTools::test_help PASSED 125s test_integration.py::TestKineticsTools::test_ecoli_first_50k SKIPPED 125s test_ipdModel.py::TestIpdModel::test_refLength SKIPPED (need access ...) 125s test_ipdModel.py::TestIpdModel::test_snippetFunc SKIPPED (need acces...) 125s test_ipdModel.py::TestIpdModel::test_getReferenceWindow SKIPPED (nee...) 125s test_loader.py::test_basic PASSED 125s test_loader.py::test_path PASSED 125s test_loader.py::test_path_with_prefixed_chem PASSED 125s test_loader.py::test_getResourcePathSpec PASSED 125s test_outputs.py::TestOutputs::test_csv_output SKIPPED (need access t...) 125s test_outputs.py::TestOutputs::test_bigwig SKIPPED (missing bw_file, ...) 125s test_summarize_modifications.py::TestSummarizeModifications::test_integration SKIPPED 125s 125s -- generated xml file: /tmp/autopkgtest.HujEA9/autopkgtest_tmp/nosetests.xml --- 125s ============================= slowest 20 durations ============================= 125s 0.62s call test_integration.py::TestKineticsTools::test_help 125s 0.16s call test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli 125s 0.02s setup test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig 125s 125s (17 durations < 0.005s hidden. Use -vv to show these durations.) 125s ======================== 7 passed, 12 skipped in 1.01s ========================= 126s autopkgtest [21:24:38]: test command1: -----------------------] 126s command1 PASS 126s autopkgtest [21:24:38]: test command1: - - - - - - - - - - results - - - - - - - - - - 126s autopkgtest [21:24:38]: @@@@@@@@@@@@@@@@@@@@ summary 126s command1 PASS