0s autopkgtest [18:31:25]: starting date and time: 2026-01-22 18:31:25+0000 0s autopkgtest [18:31:25]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [18:31:25]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.k123vdyd/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade iva --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.14.2-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-ppc64el-6.secgroup --name adt-resolute-ppc64el-iva-20260122-183125-juju-7f2275-prod-proposed-migration-environment-15-32743beb-7c71-43c4-891e-202ced419f2c --image adt/ubuntu-resolute-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-ppc64el-iva-20260122-183125-juju-7f2275-prod-proposed-migration-environment-15-32743beb-7c71-43c4-891e-202ced419f2c from image adt/ubuntu-resolute-ppc64el-server-20260122.img (UUID 987e5803-394f-43eb-a969-151b6b75a57a)... 54s autopkgtest [18:32:19]: testbed dpkg architecture: ppc64el 54s autopkgtest [18:32:19]: testbed apt version: 3.1.12 55s autopkgtest [18:32:20]: @@@@@@@@@@@@@@@@@@@@ test bed setup 55s autopkgtest [18:32:20]: testbed release detected to be: None 56s autopkgtest [18:32:21]: updating testbed package index (apt update) 56s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 56s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 56s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 56s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 56s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [19.2 kB] 56s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 56s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [80.9 kB] 56s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [815 kB] 56s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el Packages [103 kB] 56s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el Packages [618 kB] 57s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse ppc64el Packages [4644 B] 57s Fetched 1768 kB in 1s (2544 kB/s) 57s Reading package lists... 58s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 58s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 58s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 58s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 59s Reading package lists... 59s Reading package lists... 59s Building dependency tree... 59s Reading state information... 59s Calculating upgrade... 59s The following packages were automatically installed and are no longer required: 59s python3.13 python3.13-minimal 59s Use 'sudo apt autoremove' to remove them. 59s The following NEW packages will be installed: 59s libpython3.14-minimal libpython3.14-stdlib python3.14 python3.14-minimal 59s The following packages will be upgraded: 59s libpython3-stdlib python3 python3-gdbm python3-minimal 59s 4 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 59s Need to get 6966 kB of archives. 59s After this operation, 27.7 MB of additional disk space will be used. 59s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpython3.14-minimal ppc64el 3.14.2-1 [921 kB] 60s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.14-minimal ppc64el 3.14.2-1 [2712 kB] 61s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-gdbm ppc64el 3.14.2-1 [11.1 kB] 61s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-minimal ppc64el 3.14.2-1 [28.2 kB] 61s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3 ppc64el 3.14.2-1 [22.9 kB] 61s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpython3.14-stdlib ppc64el 3.14.2-1 [2444 kB] 61s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3.14 ppc64el 3.14.2-1 [816 kB] 61s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libpython3-stdlib ppc64el 3.14.2-1 [10.9 kB] 61s dpkg-preconfigure: unable to re-open stdin: No such file or directory 61s Fetched 6966 kB in 2s (4144 kB/s) 61s Selecting previously unselected package libpython3.14-minimal:ppc64el. 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 120824 files and directories currently installed.) 62s Preparing to unpack .../libpython3.14-minimal_3.14.2-1_ppc64el.deb ... 62s Unpacking libpython3.14-minimal:ppc64el (3.14.2-1) ... 62s Selecting previously unselected package python3.14-minimal. 62s Preparing to unpack .../python3.14-minimal_3.14.2-1_ppc64el.deb ... 62s Unpacking python3.14-minimal (3.14.2-1) ... 62s Preparing to unpack .../python3-gdbm_3.14.2-1_ppc64el.deb ... 62s Unpacking python3-gdbm (3.14.2-1) over (3.13.9-1) ... 62s Setting up libpython3.14-minimal:ppc64el (3.14.2-1) ... 62s Setting up python3.14-minimal (3.14.2-1) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121166 files and directories currently installed.) 63s Preparing to unpack .../python3-minimal_3.14.2-1_ppc64el.deb ... 63s Unpacking python3-minimal (3.14.2-1) over (3.13.7-1) ... 63s Setting up python3-minimal (3.14.2-1) ... 64s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121166 files and directories currently installed.) 64s Preparing to unpack .../python3_3.14.2-1_ppc64el.deb ... 64s running python pre-rtupdate hooks for python3.14... 64s Unpacking python3 (3.14.2-1) over (3.13.7-1) ... 65s Selecting previously unselected package libpython3.14-stdlib:ppc64el. 65s Preparing to unpack .../libpython3.14-stdlib_3.14.2-1_ppc64el.deb ... 65s Unpacking libpython3.14-stdlib:ppc64el (3.14.2-1) ... 66s Selecting previously unselected package python3.14. 66s Preparing to unpack .../python3.14_3.14.2-1_ppc64el.deb ... 66s Unpacking python3.14 (3.14.2-1) ... 66s Preparing to unpack .../libpython3-stdlib_3.14.2-1_ppc64el.deb ... 66s Unpacking libpython3-stdlib:ppc64el (3.14.2-1) over (3.13.7-1) ... 66s Setting up libpython3.14-stdlib:ppc64el (3.14.2-1) ... 66s Setting up python3.14 (3.14.2-1) ... 67s Setting up libpython3-stdlib:ppc64el (3.14.2-1) ... 67s Setting up python3-gdbm (3.14.2-1) ... 67s Setting up python3 (3.14.2-1) ... 67s running python rtupdate hooks for python3.14... 67s running python post-rtupdate hooks for python3.14... 67s Processing triggers for man-db (2.13.1-1) ... 69s Processing triggers for systemd (259-1ubuntu2) ... 69s autopkgtest [18:32:34]: upgrading testbed (apt dist-upgrade and autopurge) 69s Reading package lists... 69s Building dependency tree... 69s Reading state information... 69s Calculating upgrade... 69s The following packages were automatically installed and are no longer required: 69s python3.13 python3.13-minimal 69s Use 'sudo apt autoremove' to remove them. 69s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 70s Reading package lists... 70s Building dependency tree... 70s Reading state information... 70s Solving dependencies... 70s The following packages will be REMOVED: 70s python3.13* python3.13-minimal* 70s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 70s After this operation, 9077 kB disk space will be freed. 70s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121596 files and directories currently installed.) 70s Removing python3.13 (3.13.11-1) ... 70s Removing python3.13-minimal (3.13.11-1) ... 71s Processing triggers for man-db (2.13.1-1) ... 72s Processing triggers for systemd (259-1ubuntu2) ... 72s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121569 files and directories currently installed.) 72s Purging configuration files for python3.13-minimal (3.13.11-1) ... 74s autopkgtest [18:32:39]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:45:54 UTC 2026 74s autopkgtest [18:32:39]: @@@@@@@@@@@@@@@@@@@@ apt-source iva 76s Get:1 http://ftpmaster.internal/ubuntu resolute/universe iva 1.0.11+ds-6 (dsc) [2406 B] 76s Get:2 http://ftpmaster.internal/ubuntu resolute/universe iva 1.0.11+ds-6 (tar) [8681 kB] 76s Get:3 http://ftpmaster.internal/ubuntu resolute/universe iva 1.0.11+ds-6 (diff) [7228 B] 77s gpgv: Signature made Wed Dec 4 21:04:58 2024 UTC 77s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 77s gpgv: issuer "emollier@debian.org" 77s gpgv: Can't check signature: No public key 77s dpkg-source: warning: cannot verify inline signature for ./iva_1.0.11+ds-6.dsc: no acceptable signature found 77s autopkgtest [18:32:42]: testing package iva version 1.0.11+ds-6 77s autopkgtest [18:32:42]: build not needed 78s autopkgtest [18:32:43]: test test-example: preparing testbed 78s Reading package lists... 78s Building dependency tree... 78s Reading state information... 78s Solving dependencies... 78s The following NEW packages will be installed: 78s adwaita-icon-theme at-spi2-common ca-certificates-java 78s dconf-gsettings-backend dconf-service default-jre default-jre-headless 78s fastaq fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 78s gtk-update-icon-cache hicolor-icon-theme iva java-common kmc libasound2-data 78s libasound2t64 libatk-bridge2.0-0t64 libatk1.0-0t64 libatspi2.0-0t64 78s libavahi-client3 libavahi-common-data libavahi-common3 libbambamc0 libblas3 78s libcairo-gobject2 libcairo2 libcolord2 libcups2t64 libdatrie1 libdconf1 78s libdeflate0 libepoxy0 libfontconfig1 libgbm1 libgdk-pixbuf-2.0-0 78s libgdk-pixbuf2.0-common libgfortran5 libgif7 libgl1 libgl1-mesa-dri 78s libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgtk-3-0t64 libgtk-3-common 78s libharfbuzz0b libhts3t64 libhtscodecs2 libjbig0 libjbzip2-java 78s libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblerc4 libpango-1.0-0 78s libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 libpixman-1-0 78s libsharpyuv0 libthai-data libthai0 libtiff6 libvulkan1 libwayland-client0 78s libwayland-cursor0 libwayland-egl1 libwebp7 libx11-xcb1 libxcb-dri3-0 78s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 78s libxcb-sync1 libxcb-xfixes0 libxcomposite1 libxcursor1 libxdamage1 78s libxfixes3 libxi6 libxinerama1 libxrandr2 libxrender1 libxshmfence1 libxtst6 78s libxxf86vm1 mesa-libgallium mummer openjdk-21-jre openjdk-21-jre-headless 78s python3-networkx python3-numpy python3-numpy-dev python3-pysam samtools 78s smalt trimmomatic x11-common 78s 0 upgraded, 105 newly installed, 0 to remove and 0 not upgraded. 78s Need to get 113 MB of archives. 78s After this operation, 534 MB of additional disk space will be used. 78s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy-dev ppc64el 1:2.3.5+ds-3 [153 kB] 78s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el libblas3 ppc64el 3.12.1-7ubuntu1 [291 kB] 78s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgfortran5 ppc64el 15.2.0-11ubuntu1 [620 kB] 78s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblapack3 ppc64el 3.12.1-7ubuntu1 [2960 kB] 79s Get:5 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy ppc64el 1:2.3.5+ds-3 [5722 kB] 79s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgdk-pixbuf2.0-common all 2.44.4+dfsg-1 [8584 B] 79s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-4ubuntu2 [215 kB] 79s Get:8 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 79s Get:9 http://ftpmaster.internal/ubuntu resolute/main ppc64el libdeflate0 ppc64el 1.23-2 [63.3 kB] 79s Get:10 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu3 [37.1 kB] 79s Get:11 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu2 [315 kB] 79s Get:12 http://ftpmaster.internal/ubuntu resolute/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1build1 [24.7 kB] 79s Get:13 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwebp7 ppc64el 1.5.0-0.1build1 [330 kB] 79s Get:14 http://ftpmaster.internal/ubuntu resolute/main ppc64el libtiff6 ppc64el 4.7.0-3ubuntu3 [307 kB] 79s Get:15 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgdk-pixbuf-2.0-0 ppc64el 2.44.4+dfsg-1 [196 kB] 79s Get:16 http://ftpmaster.internal/ubuntu resolute/main ppc64el gtk-update-icon-cache ppc64el 4.20.3+ds-3 [57.9 kB] 79s Get:17 http://ftpmaster.internal/ubuntu resolute/main ppc64el hicolor-icon-theme all 0.18-2build1 [13.2 kB] 79s Get:18 http://ftpmaster.internal/ubuntu resolute/main ppc64el adwaita-icon-theme all 49.0-1 [581 kB] 79s Get:19 http://ftpmaster.internal/ubuntu resolute/main ppc64el at-spi2-common all 2.59.0-1 [9774 B] 79s Get:20 http://ftpmaster.internal/ubuntu resolute/main ppc64el ca-certificates-java all 20240118build1 [11.7 kB] 79s Get:21 http://ftpmaster.internal/ubuntu resolute/main ppc64el libdconf1 ppc64el 0.49.0-4 [45.7 kB] 79s Get:22 http://ftpmaster.internal/ubuntu resolute/main ppc64el dconf-service ppc64el 0.49.0-4 [31.6 kB] 79s Get:23 http://ftpmaster.internal/ubuntu resolute/main ppc64el dconf-gsettings-backend ppc64el 0.49.0-4 [27.3 kB] 79s Get:24 http://ftpmaster.internal/ubuntu resolute/main ppc64el java-common all 0.76build1 [6956 B] 79s Get:25 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblcms2-2 ppc64el 2.17-1 [246 kB] 79s Get:26 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpcsclite1 ppc64el 2.4.0-2 [31.5 kB] 79s Get:27 http://ftpmaster.internal/ubuntu resolute/main ppc64el openjdk-21-jre-headless ppc64el 21.0.10~6ea-1 [45.9 MB] 82s Get:28 http://ftpmaster.internal/ubuntu resolute/main ppc64el default-jre-headless ppc64el 2:1.21-76build1 [3270 B] 82s Get:29 http://ftpmaster.internal/ubuntu resolute/main ppc64el libatk1.0-0t64 ppc64el 2.59.0-1 [61.2 kB] 82s Get:30 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxi6 ppc64el 2:1.8.2-2 [37.0 kB] 82s Get:31 http://ftpmaster.internal/ubuntu resolute/main ppc64el libatspi2.0-0t64 ppc64el 2.59.0-1 [103 kB] 82s Get:32 http://ftpmaster.internal/ubuntu resolute/main ppc64el libatk-bridge2.0-0t64 ppc64el 2.59.0-1 [79.4 kB] 82s Get:33 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-dejavu-mono all 2.37-8build1 [502 kB] 82s Get:34 http://ftpmaster.internal/ubuntu resolute/main ppc64el fonts-dejavu-core all 2.37-8build1 [834 kB] 82s Get:35 http://ftpmaster.internal/ubuntu resolute/main ppc64el fontconfig-config ppc64el 2.15.0-2.4ubuntu1 [38.2 kB] 82s Get:36 http://ftpmaster.internal/ubuntu resolute/main ppc64el libfontconfig1 ppc64el 2.15.0-2.4ubuntu1 [190 kB] 82s Get:37 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpixman-1-0 ppc64el 0.46.4-1 [347 kB] 82s Get:38 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-render0 ppc64el 1.17.0-2build1 [17.2 kB] 82s Get:39 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-shm0 ppc64el 1.17.0-2build1 [6078 B] 82s Get:40 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxrender1 ppc64el 1:0.9.12-1 [23.0 kB] 82s Get:41 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcairo2 ppc64el 1.18.4-3 [759 kB] 82s Get:42 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcairo-gobject2 ppc64el 1.18.4-3 [127 kB] 82s Get:43 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcolord2 ppc64el 1.4.8-2 [162 kB] 82s Get:44 http://ftpmaster.internal/ubuntu resolute/main ppc64el libavahi-common-data ppc64el 0.8-17ubuntu1 [31.3 kB] 82s Get:45 http://ftpmaster.internal/ubuntu resolute/main ppc64el libavahi-common3 ppc64el 0.8-17ubuntu1 [26.3 kB] 82s Get:46 http://ftpmaster.internal/ubuntu resolute/main ppc64el libavahi-client3 ppc64el 0.8-17ubuntu1 [31.1 kB] 82s Get:47 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcups2t64 ppc64el 2.4.16-1ubuntu1 [353 kB] 82s Get:48 http://ftpmaster.internal/ubuntu resolute/main ppc64el libepoxy0 ppc64el 1.5.10-2build1 [229 kB] 82s Get:49 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgraphite2-3 ppc64el 1.3.14-11ubuntu1 [85.3 kB] 82s Get:50 http://ftpmaster.internal/ubuntu resolute/main ppc64el libharfbuzz0b ppc64el 12.3.0-4 [674 kB] 82s Get:51 http://ftpmaster.internal/ubuntu resolute/main ppc64el fontconfig ppc64el 2.15.0-2.4ubuntu1 [192 kB] 82s Get:52 http://ftpmaster.internal/ubuntu resolute/main ppc64el libthai-data all 0.1.30-1 [155 kB] 82s Get:53 http://ftpmaster.internal/ubuntu resolute/main ppc64el libdatrie1 ppc64el 0.2.14-1 [22.7 kB] 82s Get:54 http://ftpmaster.internal/ubuntu resolute/main ppc64el libthai0 ppc64el 0.1.30-1 [22.5 kB] 82s Get:55 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpango-1.0-0 ppc64el 1.56.4-1 [282 kB] 82s Get:56 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpangoft2-1.0-0 ppc64el 1.56.4-1 [61.1 kB] 82s Get:57 http://ftpmaster.internal/ubuntu resolute/main ppc64el libpangocairo-1.0-0 ppc64el 1.56.4-1 [30.9 kB] 82s Get:58 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwayland-client0 ppc64el 1.24.0-2 [32.8 kB] 82s Get:59 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwayland-cursor0 ppc64el 1.24.0-2 [11.9 kB] 82s Get:60 http://ftpmaster.internal/ubuntu resolute/main ppc64el libwayland-egl1 ppc64el 1.24.0-2 [6266 B] 82s Get:61 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcomposite1 ppc64el 1:0.4.6-1build1 [6874 B] 82s Get:62 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxfixes3 ppc64el 1:6.0.0-2build2 [11.8 kB] 82s Get:63 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcursor1 ppc64el 1:1.2.3-1build1 [28.3 kB] 82s Get:64 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxdamage1 ppc64el 1:1.1.6-1build2 [6666 B] 82s Get:65 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxinerama1 ppc64el 2:1.1.4-3build2 [6844 B] 82s Get:66 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxrandr2 ppc64el 2:1.5.4-1build1 [21.7 kB] 82s Get:67 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgtk-3-common all 3.24.50-1ubuntu2 [1425 kB] 83s Get:68 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgtk-3-0t64 ppc64el 3.24.50-1ubuntu2 [3552 kB] 83s Get:69 http://ftpmaster.internal/ubuntu resolute/main ppc64el libglvnd0 ppc64el 1.7.0-3 [67.2 kB] 83s Get:70 http://ftpmaster.internal/ubuntu resolute/main ppc64el libx11-xcb1 ppc64el 2:1.8.12-1build1 [8022 B] 83s Get:71 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-dri3-0 ppc64el 1.17.0-2build1 [7970 B] 83s Get:72 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-glx0 ppc64el 1.17.0-2build1 [26.4 kB] 83s Get:73 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-present0 ppc64el 1.17.0-2build1 [6334 B] 83s Get:74 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-xfixes0 ppc64el 1.17.0-2build1 [10.8 kB] 83s Get:75 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxxf86vm1 ppc64el 1:1.1.4-2 [12.0 kB] 83s Get:76 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-randr0 ppc64el 1.17.0-2build1 [19.1 kB] 83s Get:77 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxcb-sync1 ppc64el 1.17.0-2build1 [9924 B] 83s Get:78 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxshmfence1 ppc64el 1.3.3-1 [5364 B] 83s Get:79 http://ftpmaster.internal/ubuntu resolute/main ppc64el mesa-libgallium ppc64el 25.2.8-2ubuntu1 [12.6 MB] 84s Get:80 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgbm1 ppc64el 25.2.8-2ubuntu1 [41.3 kB] 84s Get:81 http://ftpmaster.internal/ubuntu resolute/main ppc64el libvulkan1 ppc64el 1.4.335.0-1 [175 kB] 84s Get:82 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgl1-mesa-dri ppc64el 25.2.8-2ubuntu1 [35.6 kB] 84s Get:83 http://ftpmaster.internal/ubuntu resolute/main ppc64el libglx-mesa0 ppc64el 25.2.8-2ubuntu1 [132 kB] 84s Get:84 http://ftpmaster.internal/ubuntu resolute/main ppc64el libglx0 ppc64el 1.7.0-3 [42.3 kB] 84s Get:85 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgl1 ppc64el 1.7.0-3 [103 kB] 84s Get:86 http://ftpmaster.internal/ubuntu resolute/main ppc64el libasound2-data all 1.2.15.1-1 [21.2 kB] 84s Get:87 http://ftpmaster.internal/ubuntu resolute/main ppc64el libasound2t64 ppc64el 1.2.15.1-1 [522 kB] 84s Get:88 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgif7 ppc64el 5.2.2-1ubuntu3 [40.9 kB] 84s Get:89 http://ftpmaster.internal/ubuntu resolute/main ppc64el x11-common all 1:7.7+24ubuntu1 [22.4 kB] 84s Get:90 http://ftpmaster.internal/ubuntu resolute/main ppc64el libxtst6 ppc64el 2:1.2.5-1build1 [14.6 kB] 84s Get:91 http://ftpmaster.internal/ubuntu resolute/main ppc64el openjdk-21-jre ppc64el 21.0.10~6ea-1 [254 kB] 84s Get:92 http://ftpmaster.internal/ubuntu resolute/main ppc64el default-jre ppc64el 2:1.21-76build1 [922 B] 84s Get:93 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libhtscodecs2 ppc64el 1.6.1-2 [113 kB] 84s Get:94 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libhts3t64 ppc64el 1.22.1+ds2-1 [617 kB] 84s Get:95 http://ftpmaster.internal/ubuntu resolute/universe ppc64el samtools ppc64el 1.22.1-1 [730 kB] 84s Get:96 http://ftpmaster.internal/ubuntu resolute/universe ppc64el fastaq all 3.17.0-9build1 [48.4 kB] 84s Get:97 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-networkx all 3.2.1-4ubuntu2 [11.8 MB] 84s Get:98 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pysam ppc64el 0.23.3+ds-2 [5011 kB] 85s Get:99 http://ftpmaster.internal/ubuntu resolute/universe ppc64el kmc ppc64el 3.2.4+dfsg-1build1 [1051 kB] 85s Get:100 http://ftpmaster.internal/ubuntu resolute/universe ppc64el mummer ppc64el 3.23+dfsg-8build1 [719 kB] 85s Get:101 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libbambamc0 ppc64el 0.0.50-7 [46.9 kB] 85s Get:102 http://ftpmaster.internal/ubuntu resolute/universe ppc64el smalt ppc64el 0.7.6-13 [132 kB] 85s Get:103 http://ftpmaster.internal/ubuntu resolute/universe ppc64el iva ppc64el 1.0.11+ds-6 [8583 kB] 86s Get:104 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libjbzip2-java all 0.9.1-8 [42.4 kB] 86s Get:105 http://ftpmaster.internal/ubuntu resolute/universe ppc64el trimmomatic all 0.39+dfsg-2build1 [754 kB] 86s Fetched 113 MB in 8s (14.7 MB/s) 86s Selecting previously unselected package python3-numpy-dev:ppc64el. 86s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121571 files and directories currently installed.) 86s Preparing to unpack .../000-python3-numpy-dev_1%3a2.3.5+ds-3_ppc64el.deb ... 86s Unpacking python3-numpy-dev:ppc64el (1:2.3.5+ds-3) ... 86s Selecting previously unselected package libblas3:ppc64el. 86s Preparing to unpack .../001-libblas3_3.12.1-7ubuntu1_ppc64el.deb ... 86s Unpacking libblas3:ppc64el (3.12.1-7ubuntu1) ... 86s Selecting previously unselected package libgfortran5:ppc64el. 86s Preparing to unpack .../002-libgfortran5_15.2.0-11ubuntu1_ppc64el.deb ... 86s Unpacking libgfortran5:ppc64el (15.2.0-11ubuntu1) ... 86s Selecting previously unselected package liblapack3:ppc64el. 86s Preparing to unpack .../003-liblapack3_3.12.1-7ubuntu1_ppc64el.deb ... 86s Unpacking liblapack3:ppc64el (3.12.1-7ubuntu1) ... 86s Selecting previously unselected package python3-numpy. 86s Preparing to unpack .../004-python3-numpy_1%3a2.3.5+ds-3_ppc64el.deb ... 86s Unpacking python3-numpy (1:2.3.5+ds-3) ... 87s Selecting previously unselected package libgdk-pixbuf2.0-common. 87s Preparing to unpack .../005-libgdk-pixbuf2.0-common_2.44.4+dfsg-1_all.deb ... 87s Unpacking libgdk-pixbuf2.0-common (2.44.4+dfsg-1) ... 87s Selecting previously unselected package libjpeg-turbo8:ppc64el. 87s Preparing to unpack .../006-libjpeg-turbo8_2.1.5-4ubuntu2_ppc64el.deb ... 87s Unpacking libjpeg-turbo8:ppc64el (2.1.5-4ubuntu2) ... 87s Selecting previously unselected package libjpeg8:ppc64el. 87s Preparing to unpack .../007-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 87s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 87s Selecting previously unselected package libdeflate0:ppc64el. 87s Preparing to unpack .../008-libdeflate0_1.23-2_ppc64el.deb ... 87s Unpacking libdeflate0:ppc64el (1.23-2) ... 87s Selecting previously unselected package libjbig0:ppc64el. 87s Preparing to unpack .../009-libjbig0_2.1-6.1ubuntu3_ppc64el.deb ... 87s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu3) ... 87s Selecting previously unselected package liblerc4:ppc64el. 87s Preparing to unpack .../010-liblerc4_4.0.0+ds-5ubuntu2_ppc64el.deb ... 87s Unpacking liblerc4:ppc64el (4.0.0+ds-5ubuntu2) ... 87s Selecting previously unselected package libsharpyuv0:ppc64el. 87s Preparing to unpack .../011-libsharpyuv0_1.5.0-0.1build1_ppc64el.deb ... 87s Unpacking libsharpyuv0:ppc64el (1.5.0-0.1build1) ... 87s Selecting previously unselected package libwebp7:ppc64el. 87s Preparing to unpack .../012-libwebp7_1.5.0-0.1build1_ppc64el.deb ... 87s Unpacking libwebp7:ppc64el (1.5.0-0.1build1) ... 87s Selecting previously unselected package libtiff6:ppc64el. 87s Preparing to unpack .../013-libtiff6_4.7.0-3ubuntu3_ppc64el.deb ... 87s Unpacking libtiff6:ppc64el (4.7.0-3ubuntu3) ... 87s Selecting previously unselected package libgdk-pixbuf-2.0-0:ppc64el. 87s Preparing to unpack .../014-libgdk-pixbuf-2.0-0_2.44.4+dfsg-1_ppc64el.deb ... 87s Unpacking libgdk-pixbuf-2.0-0:ppc64el (2.44.4+dfsg-1) ... 87s Selecting previously unselected package gtk-update-icon-cache. 87s Preparing to unpack .../015-gtk-update-icon-cache_4.20.3+ds-3_ppc64el.deb ... 87s No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed. 87s No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed. 87s Unpacking gtk-update-icon-cache (4.20.3+ds-3) ... 87s Selecting previously unselected package hicolor-icon-theme. 87s Preparing to unpack .../016-hicolor-icon-theme_0.18-2build1_all.deb ... 87s Unpacking hicolor-icon-theme (0.18-2build1) ... 87s Selecting previously unselected package adwaita-icon-theme. 87s Preparing to unpack .../017-adwaita-icon-theme_49.0-1_all.deb ... 87s Unpacking adwaita-icon-theme (49.0-1) ... 87s Selecting previously unselected package at-spi2-common. 87s Preparing to unpack .../018-at-spi2-common_2.59.0-1_all.deb ... 87s Unpacking at-spi2-common (2.59.0-1) ... 87s Selecting previously unselected package ca-certificates-java. 87s Preparing to unpack .../019-ca-certificates-java_20240118build1_all.deb ... 87s Unpacking ca-certificates-java (20240118build1) ... 87s Selecting previously unselected package libdconf1:ppc64el. 87s Preparing to unpack .../020-libdconf1_0.49.0-4_ppc64el.deb ... 87s Unpacking libdconf1:ppc64el (0.49.0-4) ... 87s Selecting previously unselected package dconf-service. 87s Preparing to unpack .../021-dconf-service_0.49.0-4_ppc64el.deb ... 87s Unpacking dconf-service (0.49.0-4) ... 87s Selecting previously unselected package dconf-gsettings-backend:ppc64el. 87s Preparing to unpack .../022-dconf-gsettings-backend_0.49.0-4_ppc64el.deb ... 87s Unpacking dconf-gsettings-backend:ppc64el (0.49.0-4) ... 87s Selecting previously unselected package java-common. 87s Preparing to unpack .../023-java-common_0.76build1_all.deb ... 87s Unpacking java-common (0.76build1) ... 87s Selecting previously unselected package liblcms2-2:ppc64el. 87s Preparing to unpack .../024-liblcms2-2_2.17-1_ppc64el.deb ... 87s Unpacking liblcms2-2:ppc64el (2.17-1) ... 87s Selecting previously unselected package libpcsclite1:ppc64el. 87s Preparing to unpack .../025-libpcsclite1_2.4.0-2_ppc64el.deb ... 87s Unpacking libpcsclite1:ppc64el (2.4.0-2) ... 87s Selecting previously unselected package openjdk-21-jre-headless:ppc64el. 87s Preparing to unpack .../026-openjdk-21-jre-headless_21.0.10~6ea-1_ppc64el.deb ... 87s Unpacking openjdk-21-jre-headless:ppc64el (21.0.10~6ea-1) ... 88s Selecting previously unselected package default-jre-headless. 88s Preparing to unpack .../027-default-jre-headless_2%3a1.21-76build1_ppc64el.deb ... 88s Unpacking default-jre-headless (2:1.21-76build1) ... 88s Selecting previously unselected package libatk1.0-0t64:ppc64el. 88s Preparing to unpack .../028-libatk1.0-0t64_2.59.0-1_ppc64el.deb ... 88s Unpacking libatk1.0-0t64:ppc64el (2.59.0-1) ... 88s Selecting previously unselected package libxi6:ppc64el. 88s Preparing to unpack .../029-libxi6_2%3a1.8.2-2_ppc64el.deb ... 88s Unpacking libxi6:ppc64el (2:1.8.2-2) ... 88s Selecting previously unselected package libatspi2.0-0t64:ppc64el. 88s Preparing to unpack .../030-libatspi2.0-0t64_2.59.0-1_ppc64el.deb ... 88s Unpacking libatspi2.0-0t64:ppc64el (2.59.0-1) ... 88s Selecting previously unselected package libatk-bridge2.0-0t64:ppc64el. 88s Preparing to unpack .../031-libatk-bridge2.0-0t64_2.59.0-1_ppc64el.deb ... 88s Unpacking libatk-bridge2.0-0t64:ppc64el (2.59.0-1) ... 88s Selecting previously unselected package fonts-dejavu-mono. 88s Preparing to unpack .../032-fonts-dejavu-mono_2.37-8build1_all.deb ... 88s Unpacking fonts-dejavu-mono (2.37-8build1) ... 88s Selecting previously unselected package fonts-dejavu-core. 88s Preparing to unpack .../033-fonts-dejavu-core_2.37-8build1_all.deb ... 88s Unpacking fonts-dejavu-core (2.37-8build1) ... 88s Selecting previously unselected package fontconfig-config. 88s Preparing to unpack .../034-fontconfig-config_2.15.0-2.4ubuntu1_ppc64el.deb ... 88s Unpacking fontconfig-config (2.15.0-2.4ubuntu1) ... 88s Selecting previously unselected package libfontconfig1:ppc64el. 88s Preparing to unpack .../035-libfontconfig1_2.15.0-2.4ubuntu1_ppc64el.deb ... 88s Unpacking libfontconfig1:ppc64el (2.15.0-2.4ubuntu1) ... 88s Selecting previously unselected package libpixman-1-0:ppc64el. 88s Preparing to unpack .../036-libpixman-1-0_0.46.4-1_ppc64el.deb ... 88s Unpacking libpixman-1-0:ppc64el (0.46.4-1) ... 88s Selecting previously unselected package libxcb-render0:ppc64el. 88s Preparing to unpack .../037-libxcb-render0_1.17.0-2build1_ppc64el.deb ... 88s Unpacking libxcb-render0:ppc64el (1.17.0-2build1) ... 88s Selecting previously unselected package libxcb-shm0:ppc64el. 88s Preparing to unpack .../038-libxcb-shm0_1.17.0-2build1_ppc64el.deb ... 88s Unpacking libxcb-shm0:ppc64el (1.17.0-2build1) ... 88s Selecting previously unselected package libxrender1:ppc64el. 88s Preparing to unpack .../039-libxrender1_1%3a0.9.12-1_ppc64el.deb ... 88s Unpacking libxrender1:ppc64el (1:0.9.12-1) ... 88s Selecting previously unselected package libcairo2:ppc64el. 88s Preparing to unpack .../040-libcairo2_1.18.4-3_ppc64el.deb ... 88s Unpacking libcairo2:ppc64el (1.18.4-3) ... 88s Selecting previously unselected package libcairo-gobject2:ppc64el. 88s Preparing to unpack .../041-libcairo-gobject2_1.18.4-3_ppc64el.deb ... 88s Unpacking libcairo-gobject2:ppc64el (1.18.4-3) ... 88s Selecting previously unselected package libcolord2:ppc64el. 88s Preparing to unpack .../042-libcolord2_1.4.8-2_ppc64el.deb ... 88s Unpacking libcolord2:ppc64el (1.4.8-2) ... 88s Selecting previously unselected package libavahi-common-data:ppc64el. 88s Preparing to unpack .../043-libavahi-common-data_0.8-17ubuntu1_ppc64el.deb ... 88s Unpacking libavahi-common-data:ppc64el (0.8-17ubuntu1) ... 88s Selecting previously unselected package libavahi-common3:ppc64el. 88s Preparing to unpack .../044-libavahi-common3_0.8-17ubuntu1_ppc64el.deb ... 88s Unpacking libavahi-common3:ppc64el (0.8-17ubuntu1) ... 88s Selecting previously unselected package libavahi-client3:ppc64el. 88s Preparing to unpack .../045-libavahi-client3_0.8-17ubuntu1_ppc64el.deb ... 88s Unpacking libavahi-client3:ppc64el (0.8-17ubuntu1) ... 88s Selecting previously unselected package libcups2t64:ppc64el. 88s Preparing to unpack .../046-libcups2t64_2.4.16-1ubuntu1_ppc64el.deb ... 88s Unpacking libcups2t64:ppc64el (2.4.16-1ubuntu1) ... 88s Selecting previously unselected package libepoxy0:ppc64el. 88s Preparing to unpack .../047-libepoxy0_1.5.10-2build1_ppc64el.deb ... 88s Unpacking libepoxy0:ppc64el (1.5.10-2build1) ... 89s Selecting previously unselected package libgraphite2-3:ppc64el. 89s Preparing to unpack .../048-libgraphite2-3_1.3.14-11ubuntu1_ppc64el.deb ... 89s Unpacking libgraphite2-3:ppc64el (1.3.14-11ubuntu1) ... 89s Selecting previously unselected package libharfbuzz0b:ppc64el. 89s Preparing to unpack .../049-libharfbuzz0b_12.3.0-4_ppc64el.deb ... 89s Unpacking libharfbuzz0b:ppc64el (12.3.0-4) ... 89s Selecting previously unselected package fontconfig. 89s Preparing to unpack .../050-fontconfig_2.15.0-2.4ubuntu1_ppc64el.deb ... 89s Unpacking fontconfig (2.15.0-2.4ubuntu1) ... 89s Selecting previously unselected package libthai-data. 89s Preparing to unpack .../051-libthai-data_0.1.30-1_all.deb ... 89s Unpacking libthai-data (0.1.30-1) ... 89s Selecting previously unselected package libdatrie1:ppc64el. 89s Preparing to unpack .../052-libdatrie1_0.2.14-1_ppc64el.deb ... 89s Unpacking libdatrie1:ppc64el (0.2.14-1) ... 89s Selecting previously unselected package libthai0:ppc64el. 89s Preparing to unpack .../053-libthai0_0.1.30-1_ppc64el.deb ... 89s Unpacking libthai0:ppc64el (0.1.30-1) ... 89s Selecting previously unselected package libpango-1.0-0:ppc64el. 89s Preparing to unpack .../054-libpango-1.0-0_1.56.4-1_ppc64el.deb ... 89s Unpacking libpango-1.0-0:ppc64el (1.56.4-1) ... 89s Selecting previously unselected package libpangoft2-1.0-0:ppc64el. 89s Preparing to unpack .../055-libpangoft2-1.0-0_1.56.4-1_ppc64el.deb ... 89s Unpacking libpangoft2-1.0-0:ppc64el (1.56.4-1) ... 89s Selecting previously unselected package libpangocairo-1.0-0:ppc64el. 89s Preparing to unpack .../056-libpangocairo-1.0-0_1.56.4-1_ppc64el.deb ... 89s Unpacking libpangocairo-1.0-0:ppc64el (1.56.4-1) ... 89s Selecting previously unselected package libwayland-client0:ppc64el. 89s Preparing to unpack .../057-libwayland-client0_1.24.0-2_ppc64el.deb ... 89s Unpacking libwayland-client0:ppc64el (1.24.0-2) ... 89s Selecting previously unselected package libwayland-cursor0:ppc64el. 89s Preparing to unpack .../058-libwayland-cursor0_1.24.0-2_ppc64el.deb ... 89s Unpacking libwayland-cursor0:ppc64el (1.24.0-2) ... 89s Selecting previously unselected package libwayland-egl1:ppc64el. 89s Preparing to unpack .../059-libwayland-egl1_1.24.0-2_ppc64el.deb ... 89s Unpacking libwayland-egl1:ppc64el (1.24.0-2) ... 89s Selecting previously unselected package libxcomposite1:ppc64el. 89s Preparing to unpack .../060-libxcomposite1_1%3a0.4.6-1build1_ppc64el.deb ... 89s Unpacking libxcomposite1:ppc64el (1:0.4.6-1build1) ... 89s Selecting previously unselected package libxfixes3:ppc64el. 89s Preparing to unpack .../061-libxfixes3_1%3a6.0.0-2build2_ppc64el.deb ... 89s Unpacking libxfixes3:ppc64el (1:6.0.0-2build2) ... 89s Selecting previously unselected package libxcursor1:ppc64el. 89s Preparing to unpack .../062-libxcursor1_1%3a1.2.3-1build1_ppc64el.deb ... 89s Unpacking libxcursor1:ppc64el (1:1.2.3-1build1) ... 89s Selecting previously unselected package libxdamage1:ppc64el. 89s Preparing to unpack .../063-libxdamage1_1%3a1.1.6-1build2_ppc64el.deb ... 89s Unpacking libxdamage1:ppc64el (1:1.1.6-1build2) ... 89s Selecting previously unselected package libxinerama1:ppc64el. 89s Preparing to unpack .../064-libxinerama1_2%3a1.1.4-3build2_ppc64el.deb ... 89s Unpacking libxinerama1:ppc64el (2:1.1.4-3build2) ... 89s Selecting previously unselected package libxrandr2:ppc64el. 89s Preparing to unpack .../065-libxrandr2_2%3a1.5.4-1build1_ppc64el.deb ... 89s Unpacking libxrandr2:ppc64el (2:1.5.4-1build1) ... 89s Selecting previously unselected package libgtk-3-common. 89s Preparing to unpack .../066-libgtk-3-common_3.24.50-1ubuntu2_all.deb ... 89s Unpacking libgtk-3-common (3.24.50-1ubuntu2) ... 89s Selecting previously unselected package libgtk-3-0t64:ppc64el. 89s Preparing to unpack .../067-libgtk-3-0t64_3.24.50-1ubuntu2_ppc64el.deb ... 89s Unpacking libgtk-3-0t64:ppc64el (3.24.50-1ubuntu2) ... 89s Selecting previously unselected package libglvnd0:ppc64el. 89s Preparing to unpack .../068-libglvnd0_1.7.0-3_ppc64el.deb ... 89s Unpacking libglvnd0:ppc64el (1.7.0-3) ... 89s Selecting previously unselected package libx11-xcb1:ppc64el. 89s Preparing to unpack .../069-libx11-xcb1_2%3a1.8.12-1build1_ppc64el.deb ... 89s Unpacking libx11-xcb1:ppc64el (2:1.8.12-1build1) ... 89s Selecting previously unselected package libxcb-dri3-0:ppc64el. 89s Preparing to unpack .../070-libxcb-dri3-0_1.17.0-2build1_ppc64el.deb ... 89s Unpacking libxcb-dri3-0:ppc64el (1.17.0-2build1) ... 89s Selecting previously unselected package libxcb-glx0:ppc64el. 89s Preparing to unpack .../071-libxcb-glx0_1.17.0-2build1_ppc64el.deb ... 89s Unpacking libxcb-glx0:ppc64el (1.17.0-2build1) ... 89s Selecting previously unselected package libxcb-present0:ppc64el. 89s Preparing to unpack .../072-libxcb-present0_1.17.0-2build1_ppc64el.deb ... 89s Unpacking libxcb-present0:ppc64el (1.17.0-2build1) ... 89s Selecting previously unselected package libxcb-xfixes0:ppc64el. 89s Preparing to unpack .../073-libxcb-xfixes0_1.17.0-2build1_ppc64el.deb ... 89s Unpacking libxcb-xfixes0:ppc64el (1.17.0-2build1) ... 89s Selecting previously unselected package libxxf86vm1:ppc64el. 89s Preparing to unpack .../074-libxxf86vm1_1%3a1.1.4-2_ppc64el.deb ... 89s Unpacking libxxf86vm1:ppc64el (1:1.1.4-2) ... 89s Selecting previously unselected package libxcb-randr0:ppc64el. 89s Preparing to unpack .../075-libxcb-randr0_1.17.0-2build1_ppc64el.deb ... 89s Unpacking libxcb-randr0:ppc64el (1.17.0-2build1) ... 89s Selecting previously unselected package libxcb-sync1:ppc64el. 89s Preparing to unpack .../076-libxcb-sync1_1.17.0-2build1_ppc64el.deb ... 89s Unpacking libxcb-sync1:ppc64el (1.17.0-2build1) ... 89s Selecting previously unselected package libxshmfence1:ppc64el. 89s Preparing to unpack .../077-libxshmfence1_1.3.3-1_ppc64el.deb ... 89s Unpacking libxshmfence1:ppc64el (1.3.3-1) ... 89s Selecting previously unselected package mesa-libgallium:ppc64el. 89s Preparing to unpack .../078-mesa-libgallium_25.2.8-2ubuntu1_ppc64el.deb ... 89s Unpacking mesa-libgallium:ppc64el (25.2.8-2ubuntu1) ... 89s Selecting previously unselected package libgbm1:ppc64el. 90s Preparing to unpack .../079-libgbm1_25.2.8-2ubuntu1_ppc64el.deb ... 90s Unpacking libgbm1:ppc64el (25.2.8-2ubuntu1) ... 90s Selecting previously unselected package libvulkan1:ppc64el. 90s Preparing to unpack .../080-libvulkan1_1.4.335.0-1_ppc64el.deb ... 90s Unpacking libvulkan1:ppc64el (1.4.335.0-1) ... 90s Selecting previously unselected package libgl1-mesa-dri:ppc64el. 90s Preparing to unpack .../081-libgl1-mesa-dri_25.2.8-2ubuntu1_ppc64el.deb ... 90s Unpacking libgl1-mesa-dri:ppc64el (25.2.8-2ubuntu1) ... 90s Selecting previously unselected package libglx-mesa0:ppc64el. 90s Preparing to unpack .../082-libglx-mesa0_25.2.8-2ubuntu1_ppc64el.deb ... 90s Unpacking libglx-mesa0:ppc64el (25.2.8-2ubuntu1) ... 90s Selecting previously unselected package libglx0:ppc64el. 90s Preparing to unpack .../083-libglx0_1.7.0-3_ppc64el.deb ... 90s Unpacking libglx0:ppc64el (1.7.0-3) ... 90s Selecting previously unselected package libgl1:ppc64el. 90s Preparing to unpack .../084-libgl1_1.7.0-3_ppc64el.deb ... 90s Unpacking libgl1:ppc64el (1.7.0-3) ... 90s Selecting previously unselected package libasound2-data. 90s Preparing to unpack .../085-libasound2-data_1.2.15.1-1_all.deb ... 90s Unpacking libasound2-data (1.2.15.1-1) ... 90s Selecting previously unselected package libasound2t64:ppc64el. 90s Preparing to unpack .../086-libasound2t64_1.2.15.1-1_ppc64el.deb ... 90s Unpacking libasound2t64:ppc64el (1.2.15.1-1) ... 90s Selecting previously unselected package libgif7:ppc64el. 90s Preparing to unpack .../087-libgif7_5.2.2-1ubuntu3_ppc64el.deb ... 90s Unpacking libgif7:ppc64el (5.2.2-1ubuntu3) ... 90s Selecting previously unselected package x11-common. 90s Preparing to unpack .../088-x11-common_1%3a7.7+24ubuntu1_all.deb ... 90s Unpacking x11-common (1:7.7+24ubuntu1) ... 90s Selecting previously unselected package libxtst6:ppc64el. 90s Preparing to unpack .../089-libxtst6_2%3a1.2.5-1build1_ppc64el.deb ... 90s Unpacking libxtst6:ppc64el (2:1.2.5-1build1) ... 90s Selecting previously unselected package openjdk-21-jre:ppc64el. 90s Preparing to unpack .../090-openjdk-21-jre_21.0.10~6ea-1_ppc64el.deb ... 90s Unpacking openjdk-21-jre:ppc64el (21.0.10~6ea-1) ... 90s Selecting previously unselected package default-jre. 90s Preparing to unpack .../091-default-jre_2%3a1.21-76build1_ppc64el.deb ... 90s Unpacking default-jre (2:1.21-76build1) ... 90s Selecting previously unselected package libhtscodecs2:ppc64el. 90s Preparing to unpack .../092-libhtscodecs2_1.6.1-2_ppc64el.deb ... 90s Unpacking libhtscodecs2:ppc64el (1.6.1-2) ... 90s Selecting previously unselected package libhts3t64:ppc64el. 90s Preparing to unpack .../093-libhts3t64_1.22.1+ds2-1_ppc64el.deb ... 90s Unpacking libhts3t64:ppc64el (1.22.1+ds2-1) ... 90s Selecting previously unselected package samtools. 90s Preparing to unpack .../094-samtools_1.22.1-1_ppc64el.deb ... 90s Unpacking samtools (1.22.1-1) ... 90s Selecting previously unselected package fastaq. 90s Preparing to unpack .../095-fastaq_3.17.0-9build1_all.deb ... 90s Unpacking fastaq (3.17.0-9build1) ... 90s Selecting previously unselected package python3-networkx. 90s Preparing to unpack .../096-python3-networkx_3.2.1-4ubuntu2_all.deb ... 90s Unpacking python3-networkx (3.2.1-4ubuntu2) ... 91s Selecting previously unselected package python3-pysam. 91s Preparing to unpack .../097-python3-pysam_0.23.3+ds-2_ppc64el.deb ... 91s Unpacking python3-pysam (0.23.3+ds-2) ... 91s Selecting previously unselected package kmc. 91s Preparing to unpack .../098-kmc_3.2.4+dfsg-1build1_ppc64el.deb ... 91s Unpacking kmc (3.2.4+dfsg-1build1) ... 91s Selecting previously unselected package mummer. 91s Preparing to unpack .../099-mummer_3.23+dfsg-8build1_ppc64el.deb ... 91s Unpacking mummer (3.23+dfsg-8build1) ... 91s Selecting previously unselected package libbambamc0:ppc64el. 91s Preparing to unpack .../100-libbambamc0_0.0.50-7_ppc64el.deb ... 91s Unpacking libbambamc0:ppc64el (0.0.50-7) ... 91s Selecting previously unselected package smalt. 91s Preparing to unpack .../101-smalt_0.7.6-13_ppc64el.deb ... 91s Unpacking smalt (0.7.6-13) ... 91s Selecting previously unselected package iva. 91s Preparing to unpack .../102-iva_1.0.11+ds-6_ppc64el.deb ... 91s Unpacking iva (1.0.11+ds-6) ... 91s Selecting previously unselected package libjbzip2-java. 91s Preparing to unpack .../103-libjbzip2-java_0.9.1-8_all.deb ... 91s Unpacking libjbzip2-java (0.9.1-8) ... 91s Selecting previously unselected package trimmomatic. 91s Preparing to unpack .../104-trimmomatic_0.39+dfsg-2build1_all.deb ... 91s Unpacking trimmomatic (0.39+dfsg-2build1) ... 91s Setting up libhtscodecs2:ppc64el (1.6.1-2) ... 91s Setting up libgraphite2-3:ppc64el (1.3.14-11ubuntu1) ... 91s Setting up libxcb-dri3-0:ppc64el (1.17.0-2build1) ... 91s Setting up liblcms2-2:ppc64el (2.17-1) ... 91s Setting up libpixman-1-0:ppc64el (0.46.4-1) ... 91s Setting up libsharpyuv0:ppc64el (1.5.0-0.1build1) ... 91s Setting up libx11-xcb1:ppc64el (2:1.8.12-1build1) ... 91s Setting up libxdamage1:ppc64el (1:1.1.6-1build2) ... 91s Setting up libxcb-xfixes0:ppc64el (1.17.0-2build1) ... 91s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu2) ... 91s Setting up hicolor-icon-theme (0.18-2build1) ... 91s Setting up libxi6:ppc64el (2:1.8.2-2) ... 91s Setting up java-common (0.76build1) ... 91s Setting up libxrender1:ppc64el (1:0.9.12-1) ... 91s Setting up libdatrie1:ppc64el (0.2.14-1) ... 91s Setting up libxcb-render0:ppc64el (1.17.0-2build1) ... 91s Setting up libglvnd0:ppc64el (1.7.0-3) ... 91s Setting up libxcb-glx0:ppc64el (1.17.0-2build1) ... 91s Setting up libgdk-pixbuf2.0-common (2.44.4+dfsg-1) ... 91s Setting up x11-common (1:7.7+24ubuntu1) ... 92s Setting up libdeflate0:ppc64el (1.23-2) ... 92s Setting up libxcb-shm0:ppc64el (1.17.0-2build1) ... 92s Setting up python3-networkx (3.2.1-4ubuntu2) ... 93s Setting up libjbig0:ppc64el (2.1-6.1ubuntu3) ... 93s Setting up libcolord2:ppc64el (1.4.8-2) ... 93s Setting up libxxf86vm1:ppc64el (1:1.1.4-2) ... 93s Setting up libxcb-present0:ppc64el (1.17.0-2build1) ... 93s Setting up libdconf1:ppc64el (0.49.0-4) ... 93s Setting up libasound2-data (1.2.15.1-1) ... 93s Setting up libblas3:ppc64el (3.12.1-7ubuntu1) ... 93s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 93s Setting up libasound2t64:ppc64el (1.2.15.1-1) ... 93s Setting up libepoxy0:ppc64el (1.5.10-2build1) ... 93s Setting up libxfixes3:ppc64el (1:6.0.0-2build2) ... 93s Setting up libxcb-sync1:ppc64el (1.17.0-2build1) ... 93s Setting up libavahi-common-data:ppc64el (0.8-17ubuntu1) ... 93s Setting up libatspi2.0-0t64:ppc64el (2.59.0-1) ... 93s Setting up libxinerama1:ppc64el (2:1.1.4-3build2) ... 93s Setting up libbambamc0:ppc64el (0.0.50-7) ... 93s Setting up fonts-dejavu-mono (2.37-8build1) ... 93s Setting up python3-numpy-dev:ppc64el (1:2.3.5+ds-3) ... 93s Setting up libxrandr2:ppc64el (2:1.5.4-1build1) ... 93s Setting up fonts-dejavu-core (2.37-8build1) ... 93s Setting up libjbzip2-java (0.9.1-8) ... 93s Setting up libpcsclite1:ppc64el (2.4.0-2) ... 93s Setting up libjpeg-turbo8:ppc64el (2.1.5-4ubuntu2) ... 93s Setting up libgfortran5:ppc64el (15.2.0-11ubuntu1) ... 93s Setting up libvulkan1:ppc64el (1.4.335.0-1) ... 93s Setting up libwebp7:ppc64el (1.5.0-0.1build1) ... 93s Setting up libgif7:ppc64el (5.2.2-1ubuntu3) ... 93s Setting up libxshmfence1:ppc64el (1.3.3-1) ... 93s Setting up at-spi2-common (2.59.0-1) ... 93s Setting up libxcb-randr0:ppc64el (1.17.0-2build1) ... 93s Setting up mummer (3.23+dfsg-8build1) ... 93s Setting up libhts3t64:ppc64el (1.22.1+ds2-1) ... 93s Setting up libharfbuzz0b:ppc64el (12.3.0-4) ... 93s Setting up libthai-data (0.1.30-1) ... 93s Setting up libwayland-egl1:ppc64el (1.24.0-2) ... 93s Setting up ca-certificates-java (20240118build1) ... 93s No JRE found. Skipping Java certificates setup. 93s Setting up kmc (3.2.4+dfsg-1build1) ... 93s Setting up libxcomposite1:ppc64el (1:0.4.6-1build1) ... 93s Setting up libwayland-client0:ppc64el (1.24.0-2) ... 93s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 93s Setting up smalt (0.7.6-13) ... 93s Setting up mesa-libgallium:ppc64el (25.2.8-2ubuntu1) ... 93s Setting up liblapack3:ppc64el (3.12.1-7ubuntu1) ... 93s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 93s Setting up python3-pysam (0.23.3+ds-2) ... 93s Setting up libatk1.0-0t64:ppc64el (2.59.0-1) ... 93s Setting up openjdk-21-jre-headless:ppc64el (21.0.10~6ea-1) ... 93s update-alternatives: using /usr/lib/jvm/java-21-openjdk-ppc64el/bin/java to provide /usr/bin/java (java) in auto mode 93s update-alternatives: using /usr/lib/jvm/java-21-openjdk-ppc64el/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 93s update-alternatives: using /usr/lib/jvm/java-21-openjdk-ppc64el/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 93s update-alternatives: using /usr/lib/jvm/java-21-openjdk-ppc64el/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 93s update-alternatives: using /usr/lib/jvm/java-21-openjdk-ppc64el/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 93s Setting up libgbm1:ppc64el (25.2.8-2ubuntu1) ... 93s Setting up fontconfig-config (2.15.0-2.4ubuntu1) ... 93s Setting up libxtst6:ppc64el (2:1.2.5-1build1) ... 93s Setting up libxcursor1:ppc64el (1:1.2.3-1build1) ... 93s Setting up libgl1-mesa-dri:ppc64el (25.2.8-2ubuntu1) ... 93s Setting up libavahi-common3:ppc64el (0.8-17ubuntu1) ... 93s Setting up dconf-service (0.49.0-4) ... 93s Setting up samtools (1.22.1-1) ... 93s Setting up libthai0:ppc64el (0.1.30-1) ... 93s Setting up python3-numpy (1:2.3.5+ds-3) ... 95s Setting up libtiff6:ppc64el (4.7.0-3ubuntu3) ... 95s Setting up libwayland-cursor0:ppc64el (1.24.0-2) ... 95s Setting up libgdk-pixbuf-2.0-0:ppc64el (2.44.4+dfsg-1) ... 95s Setting up libfontconfig1:ppc64el (2.15.0-2.4ubuntu1) ... 95s Setting up libavahi-client3:ppc64el (0.8-17ubuntu1) ... 95s Setting up libatk-bridge2.0-0t64:ppc64el (2.59.0-1) ... 95s Setting up gtk-update-icon-cache (4.20.3+ds-3) ... 95s Setting up fontconfig (2.15.0-2.4ubuntu1) ... 97s Regenerating fonts cache... done. 97s Setting up libglx-mesa0:ppc64el (25.2.8-2ubuntu1) ... 97s Setting up libglx0:ppc64el (1.7.0-3) ... 97s Setting up dconf-gsettings-backend:ppc64el (0.49.0-4) ... 97s Setting up fastaq (3.17.0-9build1) ... 97s Setting up libpango-1.0-0:ppc64el (1.56.4-1) ... 97s Setting up libcairo2:ppc64el (1.18.4-3) ... 97s Setting up libgl1:ppc64el (1.7.0-3) ... 97s Setting up adwaita-icon-theme (49.0-1) ... 97s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 97s Setting up libcairo-gobject2:ppc64el (1.18.4-3) ... 97s Setting up libpangoft2-1.0-0:ppc64el (1.56.4-1) ... 97s Setting up libcups2t64:ppc64el (2.4.16-1ubuntu1) ... 97s Setting up libgtk-3-common (3.24.50-1ubuntu2) ... 97s Setting up libpangocairo-1.0-0:ppc64el (1.56.4-1) ... 97s Processing triggers for libc-bin (2.42-2ubuntu4) ... 97s Processing triggers for man-db (2.13.1-1) ... 99s Processing triggers for libglib2.0-0t64:ppc64el (2.86.3-4) ... 99s Setting up libgtk-3-0t64:ppc64el (3.24.50-1ubuntu2) ... 99s Processing triggers for ca-certificates-java (20240118build1) ... 100s Adding debian:ACCVRAIZ1.pem 100s Adding debian:AC_RAIZ_FNMT-RCM.pem 100s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 100s Adding debian:ANF_Secure_Server_Root_CA.pem 100s Adding debian:Actalis_Authentication_Root_CA.pem 100s Adding debian:AffirmTrust_Commercial.pem 100s Adding debian:AffirmTrust_Networking.pem 100s Adding debian:AffirmTrust_Premium.pem 100s Adding debian:AffirmTrust_Premium_ECC.pem 100s Adding debian:Amazon_Root_CA_1.pem 100s Adding debian:Amazon_Root_CA_2.pem 100s Adding debian:Amazon_Root_CA_3.pem 100s Adding debian:Amazon_Root_CA_4.pem 100s Adding debian:Atos_TrustedRoot_2011.pem 100s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 100s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 100s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 100s Adding debian:BJCA_Global_Root_CA1.pem 100s Adding debian:BJCA_Global_Root_CA2.pem 100s Adding debian:Baltimore_CyberTrust_Root.pem 100s Adding debian:Buypass_Class_2_Root_CA.pem 100s Adding debian:Buypass_Class_3_Root_CA.pem 100s Adding debian:CA_Disig_Root_R2.pem 100s Adding debian:CFCA_EV_ROOT.pem 100s Adding debian:COMODO_Certification_Authority.pem 100s Adding debian:COMODO_ECC_Certification_Authority.pem 100s Adding debian:COMODO_RSA_Certification_Authority.pem 100s Adding debian:Certainly_Root_E1.pem 100s Adding debian:Certainly_Root_R1.pem 100s Adding debian:Certigna.pem 100s Adding debian:Certigna_Root_CA.pem 100s Adding debian:Certum_EC-384_CA.pem 100s Adding debian:Certum_Trusted_Network_CA.pem 100s Adding debian:Certum_Trusted_Network_CA_2.pem 100s Adding debian:Certum_Trusted_Root_CA.pem 100s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 100s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 100s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 100s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 100s Adding debian:Comodo_AAA_Services_root.pem 100s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 100s Adding debian:D-TRUST_BR_Root_CA_2_2023.pem 100s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 100s Adding debian:D-TRUST_EV_Root_CA_2_2023.pem 100s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 100s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 100s Adding debian:DigiCert_Assured_ID_Root_CA.pem 100s Adding debian:DigiCert_Assured_ID_Root_G2.pem 100s Adding debian:DigiCert_Assured_ID_Root_G3.pem 100s Adding debian:DigiCert_Global_Root_CA.pem 100s Adding debian:DigiCert_Global_Root_G2.pem 100s Adding debian:DigiCert_Global_Root_G3.pem 100s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 100s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 100s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 100s Adding debian:DigiCert_Trusted_Root_G4.pem 100s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 100s Adding debian:Entrust_Root_Certification_Authority.pem 100s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 100s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 100s Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem 100s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 100s Adding debian:GLOBALTRUST_2020.pem 100s Adding debian:GTS_Root_R1.pem 100s Adding debian:GTS_Root_R2.pem 100s Adding debian:GTS_Root_R3.pem 100s Adding debian:GTS_Root_R4.pem 100s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 100s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 100s Adding debian:GlobalSign_Root_CA.pem 100s Adding debian:GlobalSign_Root_CA_-_R3.pem 100s Adding debian:GlobalSign_Root_CA_-_R6.pem 100s Adding debian:GlobalSign_Root_E46.pem 100s Adding debian:GlobalSign_Root_R46.pem 100s Adding debian:Go_Daddy_Class_2_CA.pem 100s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 100s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 100s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 100s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 100s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 100s Adding debian:HiPKI_Root_CA_-_G1.pem 100s Adding debian:Hongkong_Post_Root_CA_3.pem 100s Adding debian:ISRG_Root_X1.pem 100s Adding debian:ISRG_Root_X2.pem 100s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 100s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 100s Adding debian:Izenpe.com.pem 100s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 100s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 100s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 100s Adding debian:NAVER_Global_Root_Certification_Authority.pem 100s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 100s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 100s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 100s Adding debian:QuoVadis_Root_CA_1_G3.pem 100s Adding debian:QuoVadis_Root_CA_2.pem 100s Adding debian:QuoVadis_Root_CA_2_G3.pem 100s Adding debian:QuoVadis_Root_CA_3.pem 100s Adding debian:QuoVadis_Root_CA_3_G3.pem 100s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 100s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 100s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 100s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 100s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 100s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 100s Adding debian:SZAFIR_ROOT_CA2.pem 100s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 100s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 100s Adding debian:SecureSign_Root_CA12.pem 100s Adding debian:SecureSign_Root_CA14.pem 100s Adding debian:SecureSign_Root_CA15.pem 100s Adding debian:SecureTrust_CA.pem 100s Adding debian:Secure_Global_CA.pem 100s Adding debian:Security_Communication_ECC_RootCA1.pem 100s Adding debian:Security_Communication_RootCA2.pem 100s Adding debian:Starfield_Class_2_CA.pem 100s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 100s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 100s Adding debian:SwissSign_Gold_CA_-_G2.pem 100s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 100s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 100s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 100s Adding debian:TWCA_CYBER_Root_CA.pem 100s Adding debian:TWCA_Global_Root_CA.pem 100s Adding debian:TWCA_Root_Certification_Authority.pem 100s Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem 100s Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem 100s Adding debian:TeliaSonera_Root_CA_v1.pem 100s Adding debian:Telia_Root_CA_v2.pem 100s Adding debian:TrustAsia_Global_Root_CA_G3.pem 100s Adding debian:TrustAsia_Global_Root_CA_G4.pem 100s Adding debian:Trustwave_Global_Certification_Authority.pem 100s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 100s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 100s Adding debian:TunTrust_Root_CA.pem 100s Adding debian:UCA_Extended_Validation_Root.pem 100s Adding debian:UCA_Global_G2_Root.pem 100s Adding debian:USERTrust_ECC_Certification_Authority.pem 100s Adding debian:USERTrust_RSA_Certification_Authority.pem 100s Adding debian:XRamp_Global_CA_Root.pem 100s Adding debian:certSIGN_ROOT_CA.pem 100s Adding debian:certSIGN_Root_CA_G2.pem 100s Adding debian:e-Szigno_Root_CA_2017.pem 100s Adding debian:ePKI_Root_Certification_Authority.pem 100s Adding debian:emSign_ECC_Root_CA_-_C3.pem 100s Adding debian:emSign_ECC_Root_CA_-_G3.pem 100s Adding debian:emSign_Root_CA_-_C1.pem 100s Adding debian:emSign_Root_CA_-_G1.pem 100s Adding debian:vTrus_ECC_Root_CA.pem 100s Adding debian:vTrus_Root_CA.pem 100s done. 100s Setting up default-jre-headless (2:1.21-76build1) ... 100s Setting up iva (1.0.11+ds-6) ... 100s Setting up openjdk-21-jre:ppc64el (21.0.10~6ea-1) ... 100s Setting up default-jre (2:1.21-76build1) ... 100s Setting up trimmomatic (0.39+dfsg-2build1) ... 100s Processing triggers for libc-bin (2.42-2ubuntu4) ... 101s autopkgtest [18:33:06]: test test-example: [----------------------- 116s Running iva in test mode... 116s Copied input test files into here: /tmp/tmp.6z6ELqq3po/test 116s Current working directory: /tmp/tmp.6z6ELqq3po/test 116s Running iva on the test data with the command: 116s /usr/bin/iva --threads 1 --trimmomatic /usr/share/java/trimmomatic.jar --pcr_primers hiv_pcr_primers.fa -f reads_1.fq.gz -r reads_2.fq.gz iva.out 116s The following command failed with exit code 1 116s /usr/bin/iva --threads 1 --trimmomatic /usr/share/java/trimmomatic.jar --pcr_primers hiv_pcr_primers.fa -f reads_1.fq.gz -r reads_2.fq.gz iva.out 116s 116s The output was: 116s 116s usage: iva [options] {-f reads_fwd -r reads_rev | --fr reads} 116s iva: error: the following arguments are required: Output directory 116s Traceback (most recent call last): 116s File "/usr/bin/iva", line 184, in 116s p1.start() 116s ~~~~~~~~^^ 116s File "/usr/lib/python3.14/multiprocessing/process.py", line 121, in start 116s self._popen = self._Popen(self) 116s ~~~~~~~~~~~^^^^^^ 116s File "/usr/lib/python3.14/multiprocessing/context.py", line 224, in _Popen 116s return _default_context.get_context().Process._Popen(process_obj) 116s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^ 116s File "/usr/lib/python3.14/multiprocessing/context.py", line 300, in _Popen 116s return Popen(process_obj) 116s File "/usr/lib/python3.14/multiprocessing/popen_forkserver.py", line 35, in __init__ 116s super().__init__(process_obj) 116s ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^ 116s File "/usr/lib/python3.14/multiprocessing/popen_fork.py", line 20, in __init__ 116s self._launch(process_obj) 116s ~~~~~~~~~~~~^^^^^^^^^^^^^ 116s File "/usr/lib/python3.14/multiprocessing/popen_forkserver.py", line 51, in _launch 116s self.sentinel, w = forkserver.connect_to_new_process(self._fds) 116s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ 116s File "/usr/lib/python3.14/multiprocessing/forkserver.py", line 106, in connect_to_new_process 116s connection.answer_challenge( 116s ~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 116s wrapped_client, self._forkserver_authkey) 116s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 116s File "/usr/lib/python3.14/multiprocessing/connection.py", line 970, in answer_challenge 116s message = connection.recv_bytes(256) # reject large message 116s File "/usr/lib/python3.14/multiprocessing/connection.py", line 222, in recv_bytes 116s buf = self._recv_bytes(maxlength) 116s File "/usr/lib/python3.14/multiprocessing/connection.py", line 447, in _recv_bytes 116s buf = self._recv(4) 116s File "/usr/lib/python3.14/multiprocessing/connection.py", line 412, in _recv 116s chunk = read(handle, to_read) 116s ConnectionResetError: [Errno 104] Connection reset by peer 116s 117s autopkgtest [18:33:22]: test test-example: -----------------------] 117s test-example FAIL non-zero exit status 1 117s autopkgtest [18:33:22]: test test-example: - - - - - - - - - - results - - - - - - - - - - 117s autopkgtest [18:33:22]: test test-example: - - - - - - - - - - stderr - - - - - - - - - - 117s The following command failed with exit code 1 117s /usr/bin/iva --threads 1 --trimmomatic /usr/share/java/trimmomatic.jar --pcr_primers hiv_pcr_primers.fa -f reads_1.fq.gz -r reads_2.fq.gz iva.out 117s 117s The output was: 117s 117s usage: iva [options] {-f reads_fwd -r reads_rev | --fr reads} 117s iva: error: the following arguments are required: Output directory 117s Traceback (most recent call last): 117s File "/usr/bin/iva", line 184, in 117s p1.start() 117s ~~~~~~~~^^ 117s File "/usr/lib/python3.14/multiprocessing/process.py", line 121, in start 117s self._popen = self._Popen(self) 117s ~~~~~~~~~~~^^^^^^ 117s File "/usr/lib/python3.14/multiprocessing/context.py", line 224, in _Popen 117s return _default_context.get_context().Process._Popen(process_obj) 117s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^ 117s File "/usr/lib/python3.14/multiprocessing/context.py", line 300, in _Popen 117s return Popen(process_obj) 117s File "/usr/lib/python3.14/multiprocessing/popen_forkserver.py", line 35, in __init__ 117s super().__init__(process_obj) 117s ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^ 117s File "/usr/lib/python3.14/multiprocessing/popen_fork.py", line 20, in __init__ 117s self._launch(process_obj) 117s ~~~~~~~~~~~~^^^^^^^^^^^^^ 117s File "/usr/lib/python3.14/multiprocessing/popen_forkserver.py", line 51, in _launch 117s self.sentinel, w = forkserver.connect_to_new_process(self._fds) 117s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ 117s File "/usr/lib/python3.14/multiprocessing/forkserver.py", line 106, in connect_to_new_process 117s connection.answer_challenge( 117s ~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 117s wrapped_client, self._forkserver_authkey) 117s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 117s File "/usr/lib/python3.14/multiprocessing/connection.py", line 970, in answer_challenge 117s message = connection.recv_bytes(256) # reject large message 117s File "/usr/lib/python3.14/multiprocessing/connection.py", line 222, in recv_bytes 117s buf = self._recv_bytes(maxlength) 117s File "/usr/lib/python3.14/multiprocessing/connection.py", line 447, in _recv_bytes 117s buf = self._recv(4) 117s File "/usr/lib/python3.14/multiprocessing/connection.py", line 412, in _recv 117s chunk = read(handle, to_read) 117s ConnectionResetError: [Errno 104] Connection reset by peer 117s 118s autopkgtest [18:33:23]: @@@@@@@@@@@@@@@@@@@@ summary 118s test-example FAIL non-zero exit status 1