0s autopkgtest [20:19:21]: starting date and time: 2025-10-18 20:19:21+0000 0s autopkgtest [20:19:21]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [20:19:21]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.x3qihdrt/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade hhsuite --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.13.7-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-ppc64el-2.secgroup --name adt-resolute-ppc64el-hhsuite-20251018-201921-juju-7f2275-prod-proposed-migration-environment-20-5c5209ef-8531-4afb-875e-317802e7ad31 --image adt/ubuntu-resolute-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-ppc64el-hhsuite-20251018-201921-juju-7f2275-prod-proposed-migration-environment-20-5c5209ef-8531-4afb-875e-317802e7ad31 from image adt/ubuntu-resolute-ppc64el-server-20251018.img (UUID 746a0a80-14f1-4bf7-89b6-cbb5ab236a4e)... 56s autopkgtest [20:20:17]: testbed dpkg architecture: ppc64el 56s autopkgtest [20:20:17]: testbed apt version: 3.1.8ubuntu1 57s autopkgtest [20:20:18]: @@@@@@@@@@@@@@@@@@@@ test bed setup 57s autopkgtest [20:20:18]: testbed release detected to be: None 58s autopkgtest [20:20:19]: updating testbed package index (apt update) 58s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 58s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 58s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 58s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 58s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 58s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [16.7 kB] 58s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [456 kB] 59s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [50.7 kB] 59s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el Packages [92.0 kB] 59s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted ppc64el Packages [940 B] 59s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el Packages [317 kB] 59s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse ppc64el Packages [4660 B] 59s Fetched 1026 kB in 1s (962 kB/s) 60s Reading package lists... 60s Failed to check for VM: Permission denied 60s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 60s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 60s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 60s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 61s Reading package lists... 61s Reading package lists... 61s Building dependency tree... 61s Reading state information... 62s Calculating upgrade... 62s The following packages will be upgraded: 62s gir1.2-girepository-2.0 libgirepository-1.0-1 libpython3-stdlib python3 62s python3-minimal 62s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 62s Need to get 185 kB of archives. 62s After this operation, 2048 B of additional disk space will be used. 62s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3-minimal ppc64el 3.13.7-2 [27.8 kB] 62s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el python3 ppc64el 3.13.7-2 [23.9 kB] 62s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libpython3-stdlib ppc64el 3.13.7-2 [10.6 kB] 62s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgirepository-1.0-1 ppc64el 1.86.0-6 [97.4 kB] 62s Get:5 http://ftpmaster.internal/ubuntu resolute/main ppc64el gir1.2-girepository-2.0 ppc64el 1.86.0-6 [25.3 kB] 62s dpkg-preconfigure: unable to re-open stdin: No such file or directory 62s Fetched 185 kB in 0s (451 kB/s) 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76461 files and directories currently installed.) 63s Preparing to unpack .../python3-minimal_3.13.7-2_ppc64el.deb ... 63s Unpacking python3-minimal (3.13.7-2) over (3.13.7-1) ... 63s Setting up python3-minimal (3.13.7-2) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76461 files and directories currently installed.) 63s Preparing to unpack .../python3_3.13.7-2_ppc64el.deb ... 63s running python pre-rtupdate hooks for python3.13... 63s Unpacking python3 (3.13.7-2) over (3.13.7-1) ... 63s Preparing to unpack .../libpython3-stdlib_3.13.7-2_ppc64el.deb ... 63s Unpacking libpython3-stdlib:ppc64el (3.13.7-2) over (3.13.7-1) ... 64s Preparing to unpack .../libgirepository-1.0-1_1.86.0-6_ppc64el.deb ... 64s Unpacking libgirepository-1.0-1:ppc64el (1.86.0-6) over (1.84.0-1) ... 64s Preparing to unpack .../gir1.2-girepository-2.0_1.86.0-6_ppc64el.deb ... 64s Unpacking gir1.2-girepository-2.0:ppc64el (1.86.0-6) over (1.84.0-1) ... 64s Setting up libgirepository-1.0-1:ppc64el (1.86.0-6) ... 64s Setting up libpython3-stdlib:ppc64el (3.13.7-2) ... 64s Setting up python3 (3.13.7-2) ... 64s running python rtupdate hooks for python3.13... 64s running python post-rtupdate hooks for python3.13... 64s Setting up gir1.2-girepository-2.0:ppc64el (1.86.0-6) ... 64s Processing triggers for man-db (2.13.1-1) ... 65s Processing triggers for libc-bin (2.42-0ubuntu3) ... 65s autopkgtest [20:20:26]: upgrading testbed (apt dist-upgrade and autopurge) 66s Reading package lists... 66s Building dependency tree... 66s Reading state information... 66s Calculating upgrade... 66s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 66s Reading package lists... 66s Building dependency tree... 66s Reading state information... 66s Solving dependencies... 66s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 69s autopkgtest [20:20:30]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:02:41 UTC 2025 69s autopkgtest [20:20:30]: @@@@@@@@@@@@@@@@@@@@ apt-source hhsuite 72s Get:1 http://ftpmaster.internal/ubuntu resolute/universe hhsuite 3.3.0+ds-8 (dsc) [2271 B] 72s Get:2 http://ftpmaster.internal/ubuntu resolute/universe hhsuite 3.3.0+ds-8 (tar) [4775 kB] 72s Get:3 http://ftpmaster.internal/ubuntu resolute/universe hhsuite 3.3.0+ds-8 (diff) [16.9 kB] 72s gpgv: Signature made Sun Aug 13 09:54:49 2023 UTC 72s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 72s gpgv: issuer "emollier@debian.org" 72s gpgv: Can't check signature: No public key 72s dpkg-source: warning: cannot verify inline signature for ./hhsuite_3.3.0+ds-8.dsc: no acceptable signature found 73s autopkgtest [20:20:34]: testing package hhsuite version 3.3.0+ds-8 73s autopkgtest [20:20:34]: build not needed 74s autopkgtest [20:20:35]: test run-unit-test: preparing testbed 74s Reading package lists... 74s Building dependency tree... 74s Reading state information... 74s Solving dependencies... 74s The following NEW packages will be installed: 74s hhsuite hhsuite-data libgomp1 75s 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 75s Need to get 10.6 MB of archives. 75s After this operation, 93.8 MB of additional disk space will be used. 75s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgomp1 ppc64el 15.2.0-5ubuntu1 [169 kB] 75s Get:2 http://ftpmaster.internal/ubuntu resolute/universe ppc64el hhsuite-data all 3.3.0+ds-8 [4475 kB] 75s Get:3 http://ftpmaster.internal/ubuntu resolute/universe ppc64el hhsuite ppc64el 3.3.0+ds-8 [5921 kB] 76s Fetched 10.6 MB in 1s (7696 kB/s) 76s Selecting previously unselected package libgomp1:ppc64el. 76s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76461 files and directories currently installed.) 76s Preparing to unpack .../libgomp1_15.2.0-5ubuntu1_ppc64el.deb ... 76s Unpacking libgomp1:ppc64el (15.2.0-5ubuntu1) ... 76s Selecting previously unselected package hhsuite-data. 76s Preparing to unpack .../hhsuite-data_3.3.0+ds-8_all.deb ... 76s Unpacking hhsuite-data (3.3.0+ds-8) ... 76s Selecting previously unselected package hhsuite. 76s Preparing to unpack .../hhsuite_3.3.0+ds-8_ppc64el.deb ... 76s Unpacking hhsuite (3.3.0+ds-8) ... 76s Setting up hhsuite-data (3.3.0+ds-8) ... 76s Setting up libgomp1:ppc64el (15.2.0-5ubuntu1) ... 76s Setting up hhsuite (3.3.0+ds-8) ... 76s Processing triggers for libc-bin (2.42-0ubuntu3) ... 76s Processing triggers for man-db (2.13.1-1) ... 78s autopkgtest [20:20:39]: test run-unit-test: [----------------------- 78s - 20:20:39.454 INFO: query.a3m is in A2M, A3M or FASTA format 78s 78s autopkgtest [20:20:39]: test run-unit-test: -----------------------] 79s run-unit-test PASS 79s autopkgtest [20:20:40]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 79s autopkgtest [20:20:40]: @@@@@@@@@@@@@@@@@@@@ summary 79s run-unit-test PASS