0s autopkgtest [23:45:56]: starting date and time: 2025-10-21 23:45:56+0000 0s autopkgtest [23:45:56]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [23:45:56]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.gbocg3wv/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest,src:python-pluggy --apt-upgrade gemmi --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=pytest/8.4.2-1 python-pluggy/1.6.0-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-ppc64el-6.secgroup --name adt-resolute-ppc64el-gemmi-20251021-234556-juju-7f2275-prod-proposed-migration-environment-20-266652d0-9d8e-4490-86be-f944e2b0281f --image adt/ubuntu-resolute-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-ppc64el-gemmi-20251021-234556-juju-7f2275-prod-proposed-migration-environment-20-266652d0-9d8e-4490-86be-f944e2b0281f from image adt/ubuntu-resolute-ppc64el-server-20251021.img (UUID c177abc7-cbc1-4b1f-967f-196ea722a402)... 53s autopkgtest [23:46:49]: testbed dpkg architecture: ppc64el 53s autopkgtest [23:46:49]: testbed apt version: 3.1.8ubuntu1 54s autopkgtest [23:46:50]: @@@@@@@@@@@@@@@@@@@@ test bed setup 54s autopkgtest [23:46:50]: testbed release detected to be: None 54s autopkgtest [23:46:50]: updating testbed package index (apt update) 55s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 55s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 55s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 55s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 55s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [62.2 kB] 55s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [15.0 kB] 55s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [627 kB] 55s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 55s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el Packages [119 kB] 56s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted ppc64el Packages [940 B] 56s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el Packages [427 kB] 56s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse ppc64el Packages [4596 B] 56s Fetched 1344 kB in 1s (1272 kB/s) 57s Reading package lists... 57s Failed to check for VM: Permission denied 57s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 57s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 57s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 57s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 58s Reading package lists... 58s Reading package lists... 59s Building dependency tree... 59s Reading state information... 59s Calculating upgrade... 59s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 59s autopkgtest [23:46:55]: upgrading testbed (apt dist-upgrade and autopurge) 59s Reading package lists... 59s Building dependency tree... 59s Reading state information... 59s Calculating upgrade... 59s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 59s Reading package lists... 60s Building dependency tree... 60s Reading state information... 60s Solving dependencies... 60s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 63s autopkgtest [23:46:58]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:02:41 UTC 2025 63s autopkgtest [23:46:59]: @@@@@@@@@@@@@@@@@@@@ apt-source gemmi 66s Get:1 http://ftpmaster.internal/ubuntu resolute/universe gemmi 0.6.5+ds-3 (dsc) [2280 B] 66s Get:2 http://ftpmaster.internal/ubuntu resolute/universe gemmi 0.6.5+ds-3 (tar) [1290 kB] 66s Get:3 http://ftpmaster.internal/ubuntu resolute/universe gemmi 0.6.5+ds-3 (diff) [7464 B] 66s gpgv: Signature made Mon Feb 3 14:50:02 2025 UTC 66s gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 66s gpgv: issuer "merkys@debian.org" 66s gpgv: Can't check signature: No public key 66s dpkg-source: warning: cannot verify inline signature for ./gemmi_0.6.5+ds-3.dsc: no acceptable signature found 66s autopkgtest [23:47:02]: testing package gemmi version 0.6.5+ds-3 67s autopkgtest [23:47:03]: build not needed 67s autopkgtest [23:47:03]: test command1: preparing testbed 68s Reading package lists... 68s Building dependency tree... 68s Reading state information... 68s Solving dependencies... 68s The following NEW packages will be installed: 68s gemmi gemmi-dev libblas3 libgfortran5 liblapack3 python3-gemmi 68s python3-iniconfig python3-numpy python3-numpy-dev python3-packaging 68s python3-pluggy python3-pytest tao-pegtl-dev 68s 0 upgraded, 13 newly installed, 0 to remove and 0 not upgraded. 68s Need to get 14.6 MB of archives. 68s After this operation, 59.4 MB of additional disk space will be used. 68s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy-dev ppc64el 1:2.2.4+ds-1ubuntu1 [153 kB] 68s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el libblas3 ppc64el 3.12.1-6build1 [291 kB] 68s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el libgfortran5 ppc64el 15.2.0-5ubuntu1 [620 kB] 69s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el liblapack3 ppc64el 3.12.1-6build1 [2960 kB] 69s Get:5 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-numpy ppc64el 1:2.2.4+ds-1ubuntu1 [4887 kB] 69s Get:6 http://ftpmaster.internal/ubuntu resolute/universe ppc64el gemmi ppc64el 0.6.5+ds-3 [1353 kB] 69s Get:7 http://ftpmaster.internal/ubuntu resolute/universe ppc64el tao-pegtl-dev all 3.2.7-1 [59.6 kB] 69s Get:8 http://ftpmaster.internal/ubuntu resolute/universe ppc64el gemmi-dev ppc64el 0.6.5+ds-3 [1336 kB] 69s Get:9 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-gemmi ppc64el 0.6.5+ds-3 [2613 kB] 69s Get:10 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B] 69s Get:11 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-packaging all 25.0-1 [52.8 kB] 69s Get:12 http://ftpmaster.internal/ubuntu resolute/universe ppc64el python3-pluggy all 1.6.0-1 [21.0 kB] 69s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el python3-pytest all 8.4.2-1 [268 kB] 70s Fetched 14.6 MB in 1s (10.1 MB/s) 70s Selecting previously unselected package python3-numpy-dev:ppc64el. 70s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76480 files and directories currently installed.) 70s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_ppc64el.deb ... 70s Unpacking python3-numpy-dev:ppc64el (1:2.2.4+ds-1ubuntu1) ... 70s Selecting previously unselected package libblas3:ppc64el. 70s Preparing to unpack .../01-libblas3_3.12.1-6build1_ppc64el.deb ... 70s Unpacking libblas3:ppc64el (3.12.1-6build1) ... 70s Selecting previously unselected package libgfortran5:ppc64el. 70s Preparing to unpack .../02-libgfortran5_15.2.0-5ubuntu1_ppc64el.deb ... 70s Unpacking libgfortran5:ppc64el (15.2.0-5ubuntu1) ... 70s Selecting previously unselected package liblapack3:ppc64el. 70s Preparing to unpack .../03-liblapack3_3.12.1-6build1_ppc64el.deb ... 70s Unpacking liblapack3:ppc64el (3.12.1-6build1) ... 70s Selecting previously unselected package python3-numpy. 70s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_ppc64el.deb ... 70s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 70s Selecting previously unselected package gemmi. 70s Preparing to unpack .../05-gemmi_0.6.5+ds-3_ppc64el.deb ... 70s Unpacking gemmi (0.6.5+ds-3) ... 70s Selecting previously unselected package tao-pegtl-dev. 70s Preparing to unpack .../06-tao-pegtl-dev_3.2.7-1_all.deb ... 70s Unpacking tao-pegtl-dev (3.2.7-1) ... 70s Selecting previously unselected package gemmi-dev. 70s Preparing to unpack .../07-gemmi-dev_0.6.5+ds-3_ppc64el.deb ... 70s Unpacking gemmi-dev (0.6.5+ds-3) ... 70s Selecting previously unselected package python3-gemmi. 70s Preparing to unpack .../08-python3-gemmi_0.6.5+ds-3_ppc64el.deb ... 70s Unpacking python3-gemmi (0.6.5+ds-3) ... 70s Selecting previously unselected package python3-iniconfig. 70s Preparing to unpack .../09-python3-iniconfig_1.1.1-2_all.deb ... 70s Unpacking python3-iniconfig (1.1.1-2) ... 70s Selecting previously unselected package python3-packaging. 70s Preparing to unpack .../10-python3-packaging_25.0-1_all.deb ... 70s Unpacking python3-packaging (25.0-1) ... 70s Selecting previously unselected package python3-pluggy. 70s Preparing to unpack .../11-python3-pluggy_1.6.0-1_all.deb ... 70s Unpacking python3-pluggy (1.6.0-1) ... 70s Selecting previously unselected package python3-pytest. 70s Preparing to unpack .../12-python3-pytest_8.4.2-1_all.deb ... 70s Unpacking python3-pytest (8.4.2-1) ... 70s Setting up python3-iniconfig (1.1.1-2) ... 71s Setting up python3-gemmi (0.6.5+ds-3) ... 71s Setting up libblas3:ppc64el (3.12.1-6build1) ... 71s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 71s Setting up python3-packaging (25.0-1) ... 71s Setting up python3-numpy-dev:ppc64el (1:2.2.4+ds-1ubuntu1) ... 71s Setting up libgfortran5:ppc64el (15.2.0-5ubuntu1) ... 71s Setting up python3-pluggy (1.6.0-1) ... 71s Setting up gemmi (0.6.5+ds-3) ... 71s Setting up tao-pegtl-dev (3.2.7-1) ... 71s Setting up liblapack3:ppc64el (3.12.1-6build1) ... 71s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 71s Setting up python3-pytest (8.4.2-1) ... 71s Setting up gemmi-dev (0.6.5+ds-3) ... 71s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 73s Processing triggers for man-db (2.13.1-1) ... 74s Processing triggers for libc-bin (2.42-0ubuntu3) ... 75s autopkgtest [23:47:11]: test command1: pytest-3 -k 'not test_sfcalc_ and not test_sfcalc4' 75s autopkgtest [23:47:11]: test command1: [----------------------- 76s ........................................................................ [ 38%] 77s .............................s.................s..............ssssss.... [ 76%] 77s ............................................ [100%] 77s =========================== short test summary info ============================ 77s SKIPPED [1] tests/test_mol.py:535: BioPython not installed. 77s SKIPPED [1] tests/test_monlib.py:110: $CLIBD_MON not defined. 77s SKIPPED [1] tests/test_seq.py:127: BioPython not installed. 77s SKIPPED [1] tests/test_seq.py:132: BioPython not installed. 77s SKIPPED [1] tests/test_seq.py:139: BioPython not installed. 77s SKIPPED [1] tests/test_seq.py:146: BioPython not installed. 77s SKIPPED [1] tests/test_seq.py:105: BioPython not installed. 77s SKIPPED [1] tests/test_seq.py:114: BioPython not installed. 77s 180 passed, 8 skipped, 3 deselected in 0.94s 77s autopkgtest [23:47:13]: test command1: -----------------------] 78s autopkgtest [23:47:14]: test command1: - - - - - - - - - - results - - - - - - - - - - 78s command1 PASS 78s autopkgtest [23:47:14]: @@@@@@@@@@@@@@@@@@@@ summary 78s command1 PASS