0s autopkgtest [03:42:47]: starting date and time: 2026-02-05 03:42:47+0000 0s autopkgtest [03:42:47]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [03:42:47]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ob6d3cqt/out --timeout-copy=6000 --needs-internet=try --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade filtlong --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.42-2ubuntu5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-ppc64el-12.secgroup --name adt-resolute-ppc64el-filtlong-20260205-034247-juju-7f2275-prod-proposed-migration-environment-15-7b837a77-5795-451b-9b29-619e34d9655a --image adt/ubuntu-resolute-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-ppc64el-filtlong-20260205-034247-juju-7f2275-prod-proposed-migration-environment-15-7b837a77-5795-451b-9b29-619e34d9655a from image adt/ubuntu-resolute-ppc64el-server-20260205.img (UUID f866c950-0b62-4023-bac6-0f13279e15ed)... 59s autopkgtest [03:43:46]: testbed dpkg architecture: ppc64el 60s autopkgtest [03:43:47]: testbed apt version: 3.1.14 60s autopkgtest [03:43:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup 60s autopkgtest [03:43:47]: testbed release detected to be: None 61s autopkgtest [03:43:48]: updating testbed package index (apt update) 61s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 62s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 62s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 62s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 62s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 62s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1719 kB] 62s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [227 kB] 62s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [35.4 kB] 62s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el Packages [257 kB] 62s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el Packages [1449 kB] 63s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse ppc64el Packages [21.6 kB] 63s Fetched 3839 kB in 1s (2920 kB/s) 63s Reading package lists... 66s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 66s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 66s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 66s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 67s Reading package lists... 67s Reading package lists... 67s Building dependency tree... 67s Reading state information... 67s Calculating upgrade... 67s The following packages will be upgraded: 67s libc-bin libc-gconv-modules-extra libc6 locales pollinate 67s python3-referencing sed 67s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 67s Need to get 8612 kB of archives. 67s After this operation, 0 B of additional disk space will be used. 67s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el sed ppc64el 4.9-2build3 [211 kB] 67s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libc-gconv-modules-extra ppc64el 2.42-2ubuntu5 [1448 kB] 67s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libc6 ppc64el 2.42-2ubuntu5 [1913 kB] 68s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libc-bin ppc64el 2.42-2ubuntu5 [748 kB] 68s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el locales all 2.42-2ubuntu5 [4255 kB] 69s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el pollinate all 4.33-4ubuntu5 [14.0 kB] 69s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 69s dpkg-preconfigure: unable to re-open stdin: No such file or directory 69s Fetched 8612 kB in 2s (5673 kB/s) 70s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 70s Preparing to unpack .../sed_4.9-2build3_ppc64el.deb ... 70s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 70s Setting up sed (4.9-2build3) ... 70s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 70s Preparing to unpack .../libc-gconv-modules-extra_2.42-2ubuntu5_ppc64el.deb ... 70s Unpacking libc-gconv-modules-extra:ppc64el (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 70s Setting up libc-gconv-modules-extra:ppc64el (2.42-2ubuntu5) ... 70s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 70s Preparing to unpack .../libc6_2.42-2ubuntu5_ppc64el.deb ... 71s Unpacking libc6:ppc64el (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 71s Setting up libc6:ppc64el (2.42-2ubuntu5) ... 71s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 71s Preparing to unpack .../libc-bin_2.42-2ubuntu5_ppc64el.deb ... 71s Unpacking libc-bin (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 71s Setting up libc-bin (2.42-2ubuntu5) ... 71s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 71s Preparing to unpack .../locales_2.42-2ubuntu5_all.deb ... 71s Unpacking locales (2.42-2ubuntu5) over (2.42-2ubuntu4) ... 72s Preparing to unpack .../pollinate_4.33-4ubuntu5_all.deb ... 72s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ... 72s Preparing to unpack .../python3-referencing_0.36.2-1ubuntu2_all.deb ... 73s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ... 73s Setting up locales (2.42-2ubuntu5) ... 73s Generating locales (this might take a while)... 75s en_US.UTF-8... done 75s Generation complete. 75s Setting up pollinate (4.33-4ubuntu5) ... 85s Setting up python3-referencing (0.36.2-1ubuntu2) ... 85s Processing triggers for man-db (2.13.1-1) ... 87s Processing triggers for install-info (7.2-5) ... 87s Processing triggers for systemd (259-1ubuntu3) ... 88s autopkgtest [03:44:15]: upgrading testbed (apt dist-upgrade and autopurge) 88s Reading package lists... 89s Building dependency tree... 89s Reading state information... 89s Calculating upgrade... 89s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 89s Reading package lists... 89s Building dependency tree... 89s Reading state information... 89s Solving dependencies... 89s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 89s autopkgtest [03:44:16]: rebooting testbed after setup commands that affected boot 150s autopkgtest [03:45:17]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:45:54 UTC 2026 176s autopkgtest [03:45:43]: @@@@@@@@@@@@@@@@@@@@ apt-source filtlong 193s Get:1 http://ftpmaster.internal/ubuntu resolute/universe filtlong 0.2.1-4build1 (dsc) [2064 B] 193s Get:2 http://ftpmaster.internal/ubuntu resolute/universe filtlong 0.2.1-4build1 (tar) [3009 kB] 193s Get:3 http://ftpmaster.internal/ubuntu resolute/universe filtlong 0.2.1-4build1 (diff) [6960 B] 193s gpgv: Signature made Thu Dec 11 20:32:45 2025 UTC 193s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 193s gpgv: Can't check signature: No public key 193s dpkg-source: warning: cannot verify inline signature for ./filtlong_0.2.1-4build1.dsc: no acceptable signature found 194s autopkgtest [03:46:01]: testing package filtlong version 0.2.1-4build1 249s autopkgtest [03:46:56]: build not needed 299s autopkgtest [03:47:46]: test run-unit-test: preparing testbed 302s Reading package lists... 302s Building dependency tree... 302s Reading state information... 302s Solving dependencies... 303s The following NEW packages will be installed: 303s filtlong filtlong-data 303s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 303s Need to get 4783 kB of archives. 303s After this operation, 5376 kB of additional disk space will be used. 303s Get:1 http://ftpmaster.internal/ubuntu resolute/universe ppc64el filtlong ppc64el 0.2.1-4build1 [2883 kB] 303s Get:2 http://ftpmaster.internal/ubuntu resolute/universe ppc64el filtlong-data all 0.2.1-4build1 [1900 kB] 303s Fetched 4783 kB in 0s (10.3 MB/s) 303s Selecting previously unselected package filtlong. 303s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82008 files and directories currently installed.) 303s Preparing to unpack .../filtlong_0.2.1-4build1_ppc64el.deb ... 303s Unpacking filtlong (0.2.1-4build1) ... 304s Selecting previously unselected package filtlong-data. 304s Preparing to unpack .../filtlong-data_0.2.1-4build1_all.deb ... 304s Unpacking filtlong-data (0.2.1-4build1) ... 304s Setting up filtlong (0.2.1-4build1) ... 304s Setting up filtlong-data (0.2.1-4build1) ... 304s Processing triggers for man-db (2.13.1-1) ... 365s autopkgtest [03:48:52]: test run-unit-test: [----------------------- 367s 367s Test 1 367s Passed 367s 367s Test 2 367s Passed 367s 367s Test 3 367s Passed 367s 367s Test 4 367s Passed 367s 367s Test 5 367s Scoring long reads 367s 3 reads (15000 bp) 367s 367s Filtering long reads 367s target: 11250 bp 367s keeping 15000 bp 367s 367s Outputting passed long reads 367s 367s 367s Scoring long reads 367s 3 reads (15000 bp) 367s 367s Outputting passed long reads 367s 367s 367s Hashing 16-mers from assembly 367s test_reference.fasta 367s test_reference.fasta (100000 bp) 367s 1 contig, 199964 16-mers 367s 367s Scoring long reads 367s 4 reads (11600 bp) 367s 367s Outputting passed long reads 367s 367s 367s Scoring long reads 367s 3 reads (15000 bp) 367s 367s Outputting passed long reads 367s 367s 367s Scoring long reads 367s 3 reads (15000 bp) 367s 367s Outputting passed long reads 367s 367s 367s Passed 367s 367s Test 6 367s Passed 367s 367s Test 7 367s Scoring long reads 367s 3 reads (15000 bp) 367s 367s Outputting passed long reads 367s 367s 367s Scoring long reads 367s 3 reads (15000 bp) 367s 367s Filtering long reads 367s target: 10000 bp 367s keeping 10000 bp 367s 367s Outputting passed long reads 367s 367s Passed 367s 367s Test 8 367s 367s Hashing 16-mers from Illumina reads 368s test_reference_1.fastq.gz (483700 bp) test_reference_1.fastq.gz (967400 bp) test_reference_1.fastq.gz (1451100 bp) test_reference_1.fastq.gz (1934800 bp) test_reference_1.fastq.gz (2000000 bp) 369s test_reference_2.fastq.gz (483700 bp) test_reference_2.fastq.gz (967400 bp) test_reference_2.fastq.gz (1451100 bp) test_reference_2.fastq.gz (1934800 bp) test_reference_2.fastq.gz (2000000 bp) 369s 40000 reads, 204833 16-mers 369s 369s Scoring long reads 369s 4 reads (11600 bp) 369s Passed 369s 369s Test 9 369s after splitting: 7 reads (11250 bp) 369s 369s Outputting passed long reads 369s 369s 369s Hashing 16-mers from Illumina reads 369s test_reference_1.fastq.gz (483700 bp) test_reference_1.fastq.gz (967400 bp) test_reference_1.fastq.gz (1451100 bp) test_reference_1.fastq.gz (1934800 bp) test_reference_1.fastq.gz (2000000 bp) 370s test_reference_2.fastq.gz (483700 bp) test_reference_2.fastq.gz (967400 bp) test_reference_2.fastq.gz (1451100 bp)Passed 370s 370s Test 10 370s test_reference_2.fastq.gz (1934800 bp) test_reference_2.fastq.gz (2000000 bp) 370s 40000 reads, 204833 16-mers 370s 370s Scoring long reads 370s 3 reads (15000 bp) 370s 370s Filtering long reads 370s target: 10000 bp 370s keeping 10000 bp 370s 370s Outputting passed long reads 370s 370s 370s Hashing 16-mers from Illumina reads 371s test_reference_1.fastq.gz (483700 bp) test_reference_1.fastq.gz (967400 bp) test_reference_1.fastq.gz (1451100 bp) test_reference_1.fastq.gz (1934800 bp) test_reference_1.fastq.gz (2000000 bp) 373s test_reference_2.fastq.gz (483700 bp) test_reference_2.fastq.gz (967400 bp) test_reference_2.fastq.gz (1451100 bp) test_reference_2.fastq.gz (1934800 bp) test_reference_2.fastq.gz (2000000 bp) 373s 40000 reads, 204833 16-mers 373s 373s Scoring long reads 373s 4 reads (4901 bp) 373s after trimming: 4 reads (4824 bp) 373s 373s Outputting passed long reads 373s 373s Passed 373s 373s Test 11 373s 373s Hashing 16-mers from assembly 373s test_reference.fasta 373s test_reference.fasta (100000 bp) 373s 1 contig, 199964 16-mers 373s 373s Scoring long reads 373s 4 reads (11600 bp) 373s after splitting: 4 reads (11600 bp) 373s 373s Outputting passed long reads 373s 373s Passed 373s 373s Test 12 373s 373s Hashing 16-mers from assembly 373s test_reference.fasta 373s test_reference.fasta (100000 bp) 373s 1 contig, 199964 16-mers 373s 373s Scoring long reads 373s 3 reads (15000 bp) 373s 373s Filtering long reads 373s target: 1 bp 373s keeping 5000 bp 373s 373s Outputting passed long reads 373s 373s 373s Passed 373s 373s Test 13 373s Hashing 16-mers from assembly 373s test_reference.fasta 373s test_reference.fasta (100000 bp) 373s 1 contig, 199964 16-mers 373s 373s Scoring long reads 373s 3 reads (15000 bp) 373s 373s Filtering long reads 373s target: 10000 bp 373s keeping 10000 bp 373s 373s Outputting passed long reads 373s 373s 373s Passed 373s 373s Test 14 373s Hashing 16-mers from assembly 373s test_reference.fasta 373s test_reference.fasta (100000 bp) 373s 1 contig, 199964 16-mers 373s 373s Scoring long reads 373s 4 reads (4901 bp) 373s after trimming: 4 reads (4824 bp) 373s 373s Outputting passed long reads 373s 373s Passed 373s 375s autopkgtest [03:49:00]: test run-unit-test: -----------------------] 380s autopkgtest [03:49:07]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 380s run-unit-test PASS 383s autopkgtest [03:49:10]: @@@@@@@@@@@@@@@@@@@@ summary 383s run-unit-test PASS