0s autopkgtest [18:58:08]: starting date and time: 2025-11-17 18:58:08+0000 0s autopkgtest [18:58:08]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [18:58:08]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.b5z39335/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:dnarrange --apt-upgrade dnarrange --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=dnarrange/1.6.3-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-ppc64el-8.secgroup --name adt-resolute-ppc64el-dnarrange-20251117-185808-juju-7f2275-prod-proposed-migration-environment-15-57a13b8b-df46-477c-9b93-16fec86a78cb --image adt/ubuntu-resolute-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-ppc64el-dnarrange-20251117-185808-juju-7f2275-prod-proposed-migration-environment-15-57a13b8b-df46-477c-9b93-16fec86a78cb from image adt/ubuntu-resolute-ppc64el-server-20251117.img (UUID c6f5b741-c77a-45db-84cb-f00b40e77676)... 57s autopkgtest [18:59:05]: testbed dpkg architecture: ppc64el 57s autopkgtest [18:59:05]: testbed apt version: 3.1.11 58s autopkgtest [18:59:06]: @@@@@@@@@@@@@@@@@@@@ test bed setup 58s autopkgtest [18:59:06]: testbed release detected to be: None 59s autopkgtest [18:59:07]: updating testbed package index (apt update) 59s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 59s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 59s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 59s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 60s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 60s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [22.9 kB] 60s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [778 kB] 60s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [72.6 kB] 60s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el Packages [135 kB] 60s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted ppc64el Packages [1276 B] 60s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el Packages [499 kB] 60s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse ppc64el Packages [11.0 kB] 60s Fetched 1618 kB in 1s (1373 kB/s) 61s Reading package lists... 62s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 62s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 62s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 62s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 63s Reading package lists... 63s Reading package lists... 63s Building dependency tree... 63s Reading state information... 63s Calculating upgrade... 63s The following packages will be upgraded: 63s apt libapt-pkg7.0 libcrypt-dev libcrypt1 usbutils 63s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 63s Need to get 3180 kB of archives. 63s After this operation, 118 kB of additional disk space will be used. 63s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcrypt-dev ppc64el 1:4.5.1-1 [162 kB] 64s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el libcrypt1 ppc64el 1:4.5.1-1 [125 kB] 64s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el libapt-pkg7.0 ppc64el 3.1.12 [1286 kB] 64s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el apt ppc64el 3.1.12 [1516 kB] 65s Get:5 http://ftpmaster.internal/ubuntu resolute/main ppc64el usbutils ppc64el 1:019-1 [91.5 kB] 65s dpkg-preconfigure: unable to re-open stdin: No such file or directory 65s Fetched 3180 kB in 2s (2017 kB/s) 65s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81022 files and directories currently installed.) 65s Preparing to unpack .../libcrypt-dev_1%3a4.5.1-1_ppc64el.deb ... 65s Unpacking libcrypt-dev:ppc64el (1:4.5.1-1) over (1:4.4.38-1build1) ... 65s Preparing to unpack .../libcrypt1_1%3a4.5.1-1_ppc64el.deb ... 65s Unpacking libcrypt1:ppc64el (1:4.5.1-1) over (1:4.4.38-1build1) ... 65s Setting up libcrypt1:ppc64el (1:4.5.1-1) ... 66s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81022 files and directories currently installed.) 66s Preparing to unpack .../libapt-pkg7.0_3.1.12_ppc64el.deb ... 66s Unpacking libapt-pkg7.0:ppc64el (3.1.12) over (3.1.11) ... 66s Preparing to unpack .../apt_3.1.12_ppc64el.deb ... 66s Unpacking apt (3.1.12) over (3.1.11) ... 66s Preparing to unpack .../usbutils_1%3a019-1_ppc64el.deb ... 66s Unpacking usbutils (1:019-1) over (1:018-2) ... 66s Setting up usbutils (1:019-1) ... 66s Setting up libcrypt-dev:ppc64el (1:4.5.1-1) ... 66s Setting up libapt-pkg7.0:ppc64el (3.1.12) ... 66s Setting up apt (3.1.12) ... 67s Processing triggers for man-db (2.13.1-1) ... 69s Processing triggers for libc-bin (2.42-2ubuntu2) ... 70s autopkgtest [18:59:18]: upgrading testbed (apt dist-upgrade and autopurge) 71s Reading package lists... 71s Building dependency tree... 71s Reading state information... 71s Calculating upgrade... 71s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 71s Reading package lists... 71s Building dependency tree... 71s Reading state information... 71s Solving dependencies... 71s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 72s autopkgtest [18:59:20]: rebooting testbed after setup commands that affected boot 99s autopkgtest [18:59:47]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:02:41 UTC 2025 101s autopkgtest [18:59:49]: @@@@@@@@@@@@@@@@@@@@ apt-source dnarrange 103s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/universe dnarrange 1.6.3-1 (dsc) [1699 B] 103s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/universe dnarrange 1.6.3-1 (tar) [1734 kB] 103s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/universe dnarrange 1.6.3-1 (tar) [30.8 kB] 103s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/universe dnarrange 1.6.3-1 (diff) [2740 B] 104s gpgv: Signature made Sat Nov 1 16:35:01 2025 UTC 104s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 104s gpgv: issuer "nilesh@debian.org" 104s gpgv: Can't check signature: No public key 104s dpkg-source: warning: cannot verify inline signature for ./dnarrange_1.6.3-1.dsc: no acceptable signature found 104s autopkgtest [18:59:52]: testing package dnarrange version 1.6.3-1 104s autopkgtest [18:59:52]: build not needed 105s autopkgtest [18:59:53]: test run-unit-test: preparing testbed 105s Reading package lists... 105s Building dependency tree... 105s Reading state information... 105s Solving dependencies... 105s The following NEW packages will be installed: 105s dnarrange python3-all 105s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 105s Need to get 20.8 kB of archives. 105s After this operation, 96.3 kB of additional disk space will be used. 105s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el dnarrange all 1.6.3-1 [19.9 kB] 106s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-all ppc64el 3.13.7-1 [884 B] 106s Fetched 20.8 kB in 0s (73.2 kB/s) 106s Selecting previously unselected package dnarrange. 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81022 files and directories currently installed.) 106s Preparing to unpack .../dnarrange_1.6.3-1_all.deb ... 106s Unpacking dnarrange (1.6.3-1) ... 106s Selecting previously unselected package python3-all. 106s Preparing to unpack .../python3-all_3.13.7-1_ppc64el.deb ... 106s Unpacking python3-all (3.13.7-1) ... 106s Setting up python3-all (3.13.7-1) ... 106s Setting up dnarrange (1.6.3-1) ... 107s autopkgtest [18:59:55]: test run-unit-test: [----------------------- 107s # dnarrange 107s 107s number of groups: 0 109s --- tests.out 2022-05-29 08:18:16.000000000 +0000 109s +++ - 2025-11-17 18:59:57.031703069 +0000 109s @@ -22,8 +22,10 @@ 109s -m PROB, --max-mismap=PROB 109s discard any alignment with mismap probability > PROB 109s (default=1.0) 109s + --insert=NAME find insertions of the sequence with this name 109s --shrink shrink the output 109s -v, --verbose show progress messages 109s + -w W, --width=W line-wrap width of group summary lines (default=79) 109s 109s TEST dnarrange alns.maf 109s # dnarrange alns.maf 109s autopkgtest [18:59:57]: test run-unit-test: -----------------------] 109s run-unit-test FAIL non-zero exit status 1 109s autopkgtest [18:59:57]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 110s autopkgtest [18:59:58]: @@@@@@@@@@@@@@@@@@@@ summary 110s run-unit-test FAIL non-zero exit status 1