0s autopkgtest [05:59:34]: starting date and time: 2025-10-20 05:59:34+0000 0s autopkgtest [05:59:34]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [05:59:34]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1i1r7ier/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:node-jquery --apt-upgrade bamtools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=node-jquery/3.7.1+dfsg+~3.5.33-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-ppc64el-40.secgroup --name adt-resolute-ppc64el-bamtools-20251020-055933-juju-7f2275-prod-proposed-migration-environment-2-8ead9e85-5e5a-4f63-97f3-01ee059fe26a --image adt/ubuntu-resolute-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-ppc64el-bamtools-20251020-055933-juju-7f2275-prod-proposed-migration-environment-2-8ead9e85-5e5a-4f63-97f3-01ee059fe26a from image adt/ubuntu-resolute-ppc64el-server-20251019.img (UUID 703f586b-2eb3-4fb4-9bf9-20de16a650cb)... 60s autopkgtest [06:00:34]: testbed dpkg architecture: ppc64el 61s autopkgtest [06:00:35]: testbed apt version: 3.1.8ubuntu1 61s autopkgtest [06:00:35]: @@@@@@@@@@@@@@@@@@@@ test bed setup 61s autopkgtest [06:00:35]: testbed release detected to be: None 62s autopkgtest [06:00:36]: updating testbed package index (apt update) 62s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [83.3 kB] 63s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 63s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 63s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 63s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5028 B] 63s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [14.9 kB] 63s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [700 kB] 63s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [71.4 kB] 63s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el Packages [116 kB] 63s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/restricted ppc64el Packages [940 B] 63s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/universe ppc64el Packages [410 kB] 63s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse ppc64el Packages [4176 B] 63s Fetched 1406 kB in 1s (1266 kB/s) 64s Reading package lists... 65s Failed to check for VM: Permission denied 65s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 65s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 65s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 65s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 66s Reading package lists... 66s Reading package lists... 66s Building dependency tree... 66s Reading state information... 66s Calculating upgrade... 66s The following packages will be upgraded: 66s distro-info-data dpkg dpkg-dev libaudit-common libaudit1 libdpkg-perl 66s libseccomp2 libsemanage-common libsemanage2 python-apt-common python3-apt 66s python3-cffi-backend 67s 12 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 67s Need to get 3368 kB of archives. 67s After this operation, 849 kB of additional disk space will be used. 67s Get:1 http://ftpmaster.internal/ubuntu resolute/main ppc64el dpkg ppc64el 1.22.21ubuntu4 [1361 kB] 67s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el libaudit-common all 1:4.0.5-1build2 [6596 B] 67s Get:3 http://ftpmaster.internal/ubuntu resolute/main ppc64el libaudit1 ppc64el 1:4.0.5-1build2 [62.5 kB] 67s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el libsemanage-common all 3.8.1-1build1 [7916 B] 67s Get:5 http://ftpmaster.internal/ubuntu resolute/main ppc64el libsemanage2 ppc64el 3.8.1-1build1 [123 kB] 67s Get:6 http://ftpmaster.internal/ubuntu resolute/main ppc64el distro-info-data all 0.68 [7378 B] 67s Get:7 http://ftpmaster.internal/ubuntu resolute/main ppc64el libseccomp2 ppc64el 2.6.0-2ubuntu3 [67.8 kB] 67s Get:8 http://ftpmaster.internal/ubuntu resolute/main ppc64el python-apt-common all 3.0.0ubuntu2 [21.7 kB] 67s Get:9 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-apt ppc64el 3.0.0ubuntu2 [210 kB] 67s Get:10 http://ftpmaster.internal/ubuntu resolute/main ppc64el python3-cffi-backend ppc64el 1.17.1-3build1 [132 kB] 67s Get:11 http://ftpmaster.internal/ubuntu resolute/main ppc64el dpkg-dev all 1.22.21ubuntu4 [1088 kB] 67s Get:12 http://ftpmaster.internal/ubuntu resolute/main ppc64el libdpkg-perl all 1.22.21ubuntu4 [280 kB] 68s dpkg-preconfigure: unable to re-open stdin: No such file or directory 68s Fetched 3368 kB in 1s (3423 kB/s) 68s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76461 files and directories currently installed.) 68s Preparing to unpack .../dpkg_1.22.21ubuntu4_ppc64el.deb ... 68s Unpacking dpkg (1.22.21ubuntu4) over (1.22.21ubuntu3) ... 68s Setting up dpkg (1.22.21ubuntu4) ... 68s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76461 files and directories currently installed.) 68s Preparing to unpack .../libaudit-common_1%3a4.0.5-1build2_all.deb ... 68s Unpacking libaudit-common (1:4.0.5-1build2) over (1:4.0.5-1build1) ... 68s Setting up libaudit-common (1:4.0.5-1build2) ... 69s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76461 files and directories currently installed.) 69s Preparing to unpack .../libaudit1_1%3a4.0.5-1build2_ppc64el.deb ... 69s Unpacking libaudit1:ppc64el (1:4.0.5-1build2) over (1:4.0.5-1build1) ... 69s Setting up libaudit1:ppc64el (1:4.0.5-1build2) ... 69s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76461 files and directories currently installed.) 69s Preparing to unpack .../0-libsemanage-common_3.8.1-1build1_all.deb ... 69s Unpacking libsemanage-common (3.8.1-1build1) over (3.8.1-1) ... 69s Preparing to unpack .../1-libsemanage2_3.8.1-1build1_ppc64el.deb ... 69s Unpacking libsemanage2:ppc64el (3.8.1-1build1) over (3.8.1-1) ... 69s Preparing to unpack .../2-distro-info-data_0.68_all.deb ... 69s Unpacking distro-info-data (0.68) over (0.67~ubuntu1) ... 69s Preparing to unpack .../3-libseccomp2_2.6.0-2ubuntu3_ppc64el.deb ... 69s Unpacking libseccomp2:ppc64el (2.6.0-2ubuntu3) over (2.6.0-2ubuntu2) ... 69s Preparing to unpack .../4-python-apt-common_3.0.0ubuntu2_all.deb ... 69s Unpacking python-apt-common (3.0.0ubuntu2) over (3.0.0ubuntu1) ... 69s Preparing to unpack .../5-python3-apt_3.0.0ubuntu2_ppc64el.deb ... 69s Unpacking python3-apt (3.0.0ubuntu2) over (3.0.0ubuntu1) ... 69s Preparing to unpack .../6-python3-cffi-backend_1.17.1-3build1_ppc64el.deb ... 69s Unpacking python3-cffi-backend:ppc64el (1.17.1-3build1) over (1.17.1-3) ... 69s Preparing to unpack .../7-dpkg-dev_1.22.21ubuntu4_all.deb ... 69s Unpacking dpkg-dev (1.22.21ubuntu4) over (1.22.21ubuntu3) ... 69s Preparing to unpack .../8-libdpkg-perl_1.22.21ubuntu4_all.deb ... 69s Unpacking libdpkg-perl (1.22.21ubuntu4) over (1.22.21ubuntu3) ... 69s Setting up distro-info-data (0.68) ... 69s Setting up libsemanage-common (3.8.1-1build1) ... 69s Setting up libseccomp2:ppc64el (2.6.0-2ubuntu3) ... 69s Setting up libdpkg-perl (1.22.21ubuntu4) ... 69s Setting up python-apt-common (3.0.0ubuntu2) ... 69s Setting up libsemanage2:ppc64el (3.8.1-1build1) ... 69s Setting up python3-cffi-backend:ppc64el (1.17.1-3build1) ... 69s Setting up python3-apt (3.0.0ubuntu2) ... 70s Setting up dpkg-dev (1.22.21ubuntu4) ... 70s Processing triggers for man-db (2.13.1-1) ... 72s Processing triggers for libc-bin (2.42-0ubuntu3) ... 72s autopkgtest [06:00:46]: upgrading testbed (apt dist-upgrade and autopurge) 72s Reading package lists... 72s Building dependency tree... 72s Reading state information... 72s Calculating upgrade... 72s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 73s Reading package lists... 73s Building dependency tree... 73s Reading state information... 73s Solving dependencies... 73s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 73s autopkgtest [06:00:47]: rebooting testbed after setup commands that affected boot 99s autopkgtest [06:01:13]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:02:41 UTC 2025 102s autopkgtest [06:01:16]: @@@@@@@@@@@@@@@@@@@@ apt-source bamtools 105s Get:1 http://ftpmaster.internal/ubuntu resolute/universe bamtools 2.5.2+dfsg-6build1 (dsc) [2386 B] 105s Get:2 http://ftpmaster.internal/ubuntu resolute/universe bamtools 2.5.2+dfsg-6build1 (tar) [156 kB] 105s Get:3 http://ftpmaster.internal/ubuntu resolute/universe bamtools 2.5.2+dfsg-6build1 (diff) [11.4 kB] 105s gpgv: Signature made Sat Nov 9 12:15:34 2024 UTC 105s gpgv: using RSA key B8340990283D8D9BC1949AC74799A35146D12B35 105s gpgv: Can't check signature: No public key 105s dpkg-source: warning: cannot verify inline signature for ./bamtools_2.5.2+dfsg-6build1.dsc: no acceptable signature found 105s autopkgtest [06:01:19]: testing package bamtools version 2.5.2+dfsg-6build1 106s autopkgtest [06:01:20]: build not needed 107s autopkgtest [06:01:21]: test run-unit-test: preparing testbed 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 107s Solving dependencies... 107s The following NEW packages will be installed: 107s bamtools libbamtools-dev libbamtools-doc libbamtools2.5.2 libjs-jquery 107s libjsoncpp26 zlib1g-dev 107s 0 upgraded, 7 newly installed, 0 to remove and 0 not upgraded. 107s Need to get 2099 kB of archives. 107s After this operation, 8087 kB of additional disk space will be used. 107s Get:1 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libbamtools2.5.2 ppc64el 2.5.2+dfsg-6build1 [152 kB] 108s Get:2 http://ftpmaster.internal/ubuntu resolute/main ppc64el libjsoncpp26 ppc64el 1.9.6-3 [91.3 kB] 108s Get:3 http://ftpmaster.internal/ubuntu resolute/universe ppc64el bamtools ppc64el 2.5.2+dfsg-6build1 [183 kB] 108s Get:4 http://ftpmaster.internal/ubuntu resolute/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg+really1.3.1-1ubuntu2 [903 kB] 108s Get:5 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libbamtools-dev ppc64el 2.5.2+dfsg-6build1 [289 kB] 108s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main ppc64el libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 108s Get:7 http://ftpmaster.internal/ubuntu resolute/universe ppc64el libbamtools-doc all 2.5.2+dfsg-6build1 [159 kB] 108s Fetched 2099 kB in 1s (2255 kB/s) 108s Selecting previously unselected package libbamtools2.5.2:ppc64el. 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76466 files and directories currently installed.) 109s Preparing to unpack .../0-libbamtools2.5.2_2.5.2+dfsg-6build1_ppc64el.deb ... 109s Unpacking libbamtools2.5.2:ppc64el (2.5.2+dfsg-6build1) ... 109s Selecting previously unselected package libjsoncpp26:ppc64el. 109s Preparing to unpack .../1-libjsoncpp26_1.9.6-3_ppc64el.deb ... 109s Unpacking libjsoncpp26:ppc64el (1.9.6-3) ... 109s Selecting previously unselected package bamtools. 109s Preparing to unpack .../2-bamtools_2.5.2+dfsg-6build1_ppc64el.deb ... 109s Unpacking bamtools (2.5.2+dfsg-6build1) ... 109s Selecting previously unselected package zlib1g-dev:ppc64el. 109s Preparing to unpack .../3-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_ppc64el.deb ... 109s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 109s Selecting previously unselected package libbamtools-dev:ppc64el. 109s Preparing to unpack .../4-libbamtools-dev_2.5.2+dfsg-6build1_ppc64el.deb ... 109s Unpacking libbamtools-dev:ppc64el (2.5.2+dfsg-6build1) ... 109s Selecting previously unselected package libjs-jquery. 109s Preparing to unpack .../5-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 109s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 109s Selecting previously unselected package libbamtools-doc. 109s Preparing to unpack .../6-libbamtools-doc_2.5.2+dfsg-6build1_all.deb ... 109s Unpacking libbamtools-doc (2.5.2+dfsg-6build1) ... 109s Setting up libjsoncpp26:ppc64el (1.9.6-3) ... 109s Setting up libbamtools2.5.2:ppc64el (2.5.2+dfsg-6build1) ... 109s Setting up zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 109s Setting up bamtools (2.5.2+dfsg-6build1) ... 109s Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 109s Setting up libbamtools-dev:ppc64el (2.5.2+dfsg-6build1) ... 109s Setting up libbamtools-doc (2.5.2+dfsg-6build1) ... 109s Processing triggers for man-db (2.13.1-1) ... 109s Processing triggers for libc-bin (2.42-0ubuntu3) ... 111s autopkgtest [06:01:25]: test run-unit-test: [----------------------- 111s 6 111s @HD VN:1.5 SO:coordinate 111s @SQ SN:ref LN:45 111s 111s 111s ********************************************** 111s Stats for BAM file(s): 111s ********************************************** 111s 111s Total reads: 6 111s Mapped reads: 6 (100%) 111s Forward strand: 4 (66.6667%) 111s Reverse strand: 2 (33.3333%) 111s Failed QC: 0 (0%) 111s Duplicates: 0 (0%) 111s Paired-end reads: 2 (33.3333%) 111s 'Proper-pairs': 2 (100%) 111s Both pairs mapped: 2 (100%) 111s Read 1: 1 111s Read 2: 1 111s Singletons: 0 (0%) 111s 112s autopkgtest [06:01:26]: test run-unit-test: -----------------------] 112s run-unit-test PASS 112s autopkgtest [06:01:26]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 112s autopkgtest [06:01:26]: @@@@@@@@@@@@@@@@@@@@ summary 112s run-unit-test PASS