0s autopkgtest [11:08:21]: starting date and time: 2025-11-01 11:08:21+0000 0s autopkgtest [11:08:21]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [11:08:21]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.enn5k0v6/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:scipy --apt-upgrade svim --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=scipy/1.16.3-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-5.secgroup --name adt-resolute-i386-svim-20251101-110821-juju-7f2275-prod-proposed-migration-environment-20-a7bc6c7f-0e83-48db-862f-6512dc6c632a --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-i386-svim-20251101-110821-juju-7f2275-prod-proposed-migration-environment-20-a7bc6c7f-0e83-48db-862f-6512dc6c632a from image adt/ubuntu-resolute-amd64-server-20251101.img (UUID 52e48a54-2032-4a7c-9d86-f677995aa72b)... 29s autopkgtest [11:08:50]: testbed dpkg architecture: amd64 29s autopkgtest [11:08:50]: testbed apt version: 3.1.11 29s autopkgtest [11:08:50]: @@@@@@@@@@@@@@@@@@@@ test bed setup 30s autopkgtest [11:08:51]: testbed release detected to be: None 30s autopkgtest [11:08:51]: updating testbed package index (apt update) 30s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [87.8 kB] 30s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 30s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 30s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 31s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [138 kB] 31s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [9848 B] 31s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [2408 kB] 31s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [50.0 kB] 31s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [213 kB] 31s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [137 kB] 31s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [5124 B] 31s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [64.6 kB] 31s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3744 B] 31s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 31s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [728 kB] 31s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1785 kB] 32s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [53.1 kB] 32s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [14.4 kB] 32s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [38.5 kB] 32s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [1944 B] 32s Fetched 5738 kB in 1s (4114 kB/s) 33s Reading package lists... 33s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 33s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 33s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 33s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 34s Reading package lists... 34s Reading package lists... 34s Building dependency tree... 34s Reading state information... 34s Calculating upgrade... 34s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 34s autopkgtest [11:08:55]: upgrading testbed (apt dist-upgrade and autopurge) 34s Reading package lists... 35s Building dependency tree... 35s Reading state information... 35s Calculating upgrade... 35s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 35s Reading package lists... 35s Building dependency tree... 35s Reading state information... 35s Solving dependencies... 35s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 37s autopkgtest [11:08:58]: testbed running kernel: Linux 6.17.0-5-generic #5-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 22 10:00:33 UTC 2025 37s autopkgtest [11:08:58]: @@@@@@@@@@@@@@@@@@@@ apt-source svim 38s Get:1 http://ftpmaster.internal/ubuntu resolute/universe svim 2.0.0-3 (dsc) [1467 B] 38s Get:2 http://ftpmaster.internal/ubuntu resolute/universe svim 2.0.0-3 (tar) [190 kB] 38s Get:3 http://ftpmaster.internal/ubuntu resolute/universe svim 2.0.0-3 (diff) [4216 B] 38s gpgv: Signature made Tue Dec 20 21:12:47 2022 UTC 38s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 38s gpgv: Can't check signature: No public key 38s dpkg-source: warning: cannot verify inline signature for ./svim_2.0.0-3.dsc: no acceptable signature found 38s autopkgtest [11:08:59]: testing package svim version 2.0.0-3 39s autopkgtest [11:09:00]: build not needed 39s autopkgtest [11:09:00]: test run-unit-test: preparing testbed 39s Reading package lists... 39s Building dependency tree... 39s Reading state information... 39s Solving dependencies... 39s The following NEW packages will be installed: 39s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libblas3 39s libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 39s libharfbuzz0b libhts3t64 libhtscodecs2 libimagequant0 libjbig0 39s libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblerc4 libopenjp2-7 39s libqhull-r8.0 libraqm0 libsharpyuv0 libspoa7.0.0 libtcl8.6 libtiff6 libtk8.6 39s libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 39s libzopfli1 python-matplotlib-data python3-brotli python3-contourpy 39s python3-cpuinfo python3-cycler python3-dateutil python3-decorator 39s python3-edlib python3-fonttools python3-fs python3-kiwisolver python3-lxml 39s python3-lz4 python3-matplotlib python3-mpmath python3-numpy 39s python3-numpy-dev python3-packaging python3-pil python3-pil.imagetk 39s python3-platformdirs python3-pysam python3-pyspoa python3-scipy 39s python3-sympy python3-tk python3-ufolib2 python3-unicodedata2 python3-zopfli 39s python3.13-tk python3.14-tk svim tk8.6-blt2.5 unicode-data x11-common 39s 0 upgraded, 72 newly installed, 0 to remove and 0 not upgraded. 39s Need to get 81.6 MB of archives. 39s After this operation, 381 MB of additional disk space will be used. 39s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1ubuntu1 [147 kB] 39s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-6build1 [263 kB] 39s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-7ubuntu1 [939 kB] 40s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-6build1 [2762 kB] 40s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy amd64 1:2.2.4+ds-1ubuntu1 [5377 kB] 40s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1036 kB] 40s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 40s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 40s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.15.0-2.3ubuntu1 [38.0 kB] 40s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.15.0-2.3ubuntu1 [141 kB] 40s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 40s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 40s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 40s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 40s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 40s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [694 kB] 40s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 blt amd64 2.5.3+dfsg-8 [4824 B] 40s Get:18 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-lyx all 2.4.4-1 [171 kB] 40s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 40s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-7ubuntu1 [151 kB] 40s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 40s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.1.0-1 [535 kB] 40s Get:23 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhtscodecs2 amd64 1.6.1-2 [132 kB] 40s Get:24 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhts3t64 amd64 1.21+ds-1 [514 kB] 40s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 40s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 40s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 40s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 40s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 40s Get:30 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 40s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libraqm0 amd64 0.10.3-1 [15.4 kB] 40s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 40s Get:33 http://ftpmaster.internal/ubuntu resolute/universe amd64 libspoa7.0.0 amd64 4.1.4-2 [79.1 kB] 40s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 40s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 40s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 40s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB] 40s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 40s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libxslt1.1 amd64 1.1.43-0.3 [172 kB] 40s Get:40 http://ftpmaster.internal/ubuntu resolute/universe amd64 libzopfli1 amd64 1.0.3-3 [141 kB] 40s Get:41 http://ftpmaster.internal/ubuntu resolute/universe amd64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 40s Get:42 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-brotli amd64 1.1.0-2build6 [340 kB] 40s Get:43 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-contourpy amd64 1.3.1-1build2 [265 kB] 40s Get:44 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cpuinfo all 9.0.0+git20221119-3 [21.7 kB] 40s Get:45 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cycler all 0.12.1-2 [9850 B] 40s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-dateutil all 2.9.0-4 [80.3 kB] 40s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-decorator all 5.2.1-2 [28.1 kB] 40s Get:48 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-edlib amd64 1.2.7-7 [99.4 kB] 40s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-platformdirs all 4.3.7-1 [16.9 kB] 40s Get:50 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fs all 2.4.16-7 [90.8 kB] 40s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-lxml amd64 6.0.1-1build1 [2336 kB] 40s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-lz4 amd64 4.4.4+dfsg-3 [27.5 kB] 40s Get:53 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 python3-scipy amd64 1.16.3-1 [18.8 MB] 41s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 41s Get:55 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sympy all 1.13.3-5 [4229 kB] 41s Get:56 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 41s Get:57 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-unicodedata2 amd64 16.0.0+ds-1build1 [400 kB] 41s Get:58 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-zopfli amd64 0.2.3.post1-1 [10.8 kB] 41s Get:59 http://ftpmaster.internal/ubuntu resolute/universe amd64 unicode-data all 16.0.0-1 [9513 kB] 42s Get:60 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fonttools amd64 4.57.0-2build1 [1731 kB] 42s Get:61 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-kiwisolver amd64 1.4.10~rc0-1 [65.5 kB] 42s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [188 kB] 42s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pil amd64 11.3.0-1ubuntu2 [504 kB] 42s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-tk amd64 3.14.0-4 [108 kB] 42s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-tk amd64 3.13.9-1 [108 kB] 42s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tk amd64 3.13.9-1 [8946 B] 42s Get:67 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pil.imagetk amd64 11.3.0-1ubuntu2 [9804 B] 42s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-packaging all 25.0-1 [52.8 kB] 42s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-matplotlib amd64 3.10.7+dfsg1-1 [17.2 MB] 42s Get:70 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pysam amd64 0.23.0+ds-1build2 [4551 kB] 42s Get:71 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pyspoa amd64 0.2.1-2build2 [77.0 kB] 42s Get:72 http://ftpmaster.internal/ubuntu resolute/universe amd64 svim all 2.0.0-3 [34.9 kB] 43s Fetched 81.6 MB in 3s (26.1 MB/s) 43s Selecting previously unselected package python3-numpy-dev:amd64. 43s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78534 files and directories currently installed.) 43s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 43s Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 43s Selecting previously unselected package libblas3:amd64. 43s Preparing to unpack .../01-libblas3_3.12.1-6build1_amd64.deb ... 43s Unpacking libblas3:amd64 (3.12.1-6build1) ... 43s Selecting previously unselected package libgfortran5:amd64. 43s Preparing to unpack .../02-libgfortran5_15.2.0-7ubuntu1_amd64.deb ... 43s Unpacking libgfortran5:amd64 (15.2.0-7ubuntu1) ... 43s Selecting previously unselected package liblapack3:amd64. 43s Preparing to unpack .../03-liblapack3_3.12.1-6build1_amd64.deb ... 43s Unpacking liblapack3:amd64 (3.12.1-6build1) ... 43s Selecting previously unselected package python3-numpy. 43s Preparing to unpack .../04-python3-numpy_1%3a2.2.4+ds-1ubuntu1_amd64.deb ... 43s Unpacking python3-numpy (1:2.2.4+ds-1ubuntu1) ... 43s Selecting previously unselected package libtcl8.6:amd64. 43s Preparing to unpack .../05-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... 43s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... 43s Selecting previously unselected package fonts-dejavu-mono. 43s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 43s Unpacking fonts-dejavu-mono (2.37-8) ... 43s Selecting previously unselected package fonts-dejavu-core. 43s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 43s Unpacking fonts-dejavu-core (2.37-8) ... 43s Selecting previously unselected package fontconfig-config. 43s Preparing to unpack .../08-fontconfig-config_2.15.0-2.3ubuntu1_amd64.deb ... 43s Unpacking fontconfig-config (2.15.0-2.3ubuntu1) ... 43s Selecting previously unselected package libfontconfig1:amd64. 43s Preparing to unpack .../09-libfontconfig1_2.15.0-2.3ubuntu1_amd64.deb ... 43s Unpacking libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 43s Selecting previously unselected package libxrender1:amd64. 43s Preparing to unpack .../10-libxrender1_1%3a0.9.12-1_amd64.deb ... 43s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 43s Selecting previously unselected package libxft2:amd64. 43s Preparing to unpack .../11-libxft2_2.3.6-1build1_amd64.deb ... 43s Unpacking libxft2:amd64 (2.3.6-1build1) ... 43s Selecting previously unselected package x11-common. 43s Preparing to unpack .../12-x11-common_1%3a7.7+24ubuntu1_all.deb ... 43s Unpacking x11-common (1:7.7+24ubuntu1) ... 43s Selecting previously unselected package libxss1:amd64. 43s Preparing to unpack .../13-libxss1_1%3a1.2.3-1build3_amd64.deb ... 43s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 43s Selecting previously unselected package libtk8.6:amd64. 43s Preparing to unpack .../14-libtk8.6_8.6.17-1_amd64.deb ... 43s Unpacking libtk8.6:amd64 (8.6.17-1) ... 43s Selecting previously unselected package tk8.6-blt2.5. 43s Preparing to unpack .../15-tk8.6-blt2.5_2.5.3+dfsg-8_amd64.deb ... 43s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 43s Selecting previously unselected package blt. 43s Preparing to unpack .../16-blt_2.5.3+dfsg-8_amd64.deb ... 43s Unpacking blt (2.5.3+dfsg-8) ... 43s Selecting previously unselected package fonts-lyx. 43s Preparing to unpack .../17-fonts-lyx_2.4.4-1_all.deb ... 43s Unpacking fonts-lyx (2.4.4-1) ... 43s Selecting previously unselected package libdeflate0:amd64. 43s Preparing to unpack .../18-libdeflate0_1.23-2_amd64.deb ... 43s Unpacking libdeflate0:amd64 (1.23-2) ... 43s Selecting previously unselected package libgomp1:amd64. 43s Preparing to unpack .../19-libgomp1_15.2.0-7ubuntu1_amd64.deb ... 43s Unpacking libgomp1:amd64 (15.2.0-7ubuntu1) ... 43s Selecting previously unselected package libgraphite2-3:amd64. 43s Preparing to unpack .../20-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 43s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 43s Selecting previously unselected package libharfbuzz0b:amd64. 43s Preparing to unpack .../21-libharfbuzz0b_12.1.0-1_amd64.deb ... 43s Unpacking libharfbuzz0b:amd64 (12.1.0-1) ... 43s Selecting previously unselected package libhtscodecs2:amd64. 43s Preparing to unpack .../22-libhtscodecs2_1.6.1-2_amd64.deb ... 43s Unpacking libhtscodecs2:amd64 (1.6.1-2) ... 43s Selecting previously unselected package libhts3t64:amd64. 43s Preparing to unpack .../23-libhts3t64_1.21+ds-1_amd64.deb ... 43s Unpacking libhts3t64:amd64 (1.21+ds-1) ... 43s Selecting previously unselected package libimagequant0:amd64. 43s Preparing to unpack .../24-libimagequant0_2.18.0-1build1_amd64.deb ... 43s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 43s Selecting previously unselected package libjpeg-turbo8:amd64. 43s Preparing to unpack .../25-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 43s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 43s Selecting previously unselected package libjpeg8:amd64. 43s Preparing to unpack .../26-libjpeg8_8c-2ubuntu11_amd64.deb ... 43s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 43s Selecting previously unselected package liblcms2-2:amd64. 43s Preparing to unpack .../27-liblcms2-2_2.16-2_amd64.deb ... 43s Unpacking liblcms2-2:amd64 (2.16-2) ... 43s Selecting previously unselected package liblerc4:amd64. 43s Preparing to unpack .../28-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 43s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 43s Selecting previously unselected package libqhull-r8.0:amd64. 43s Preparing to unpack .../29-libqhull-r8.0_2020.2-6build1_amd64.deb ... 43s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 43s Selecting previously unselected package libraqm0:amd64. 43s Preparing to unpack .../30-libraqm0_0.10.3-1_amd64.deb ... 43s Unpacking libraqm0:amd64 (0.10.3-1) ... 43s Selecting previously unselected package libsharpyuv0:amd64. 43s Preparing to unpack .../31-libsharpyuv0_1.5.0-0.1_amd64.deb ... 43s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 43s Selecting previously unselected package libspoa7.0.0:amd64. 43s Preparing to unpack .../32-libspoa7.0.0_4.1.4-2_amd64.deb ... 43s Unpacking libspoa7.0.0:amd64 (4.1.4-2) ... 43s Selecting previously unselected package libjbig0:amd64. 43s Preparing to unpack .../33-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 43s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 43s Selecting previously unselected package libwebp7:amd64. 43s Preparing to unpack .../34-libwebp7_1.5.0-0.1_amd64.deb ... 43s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 43s Selecting previously unselected package libtiff6:amd64. 43s Preparing to unpack .../35-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 43s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 43s Selecting previously unselected package libwebpdemux2:amd64. 43s Preparing to unpack .../36-libwebpdemux2_1.5.0-0.1_amd64.deb ... 43s Unpacking libwebpdemux2:amd64 (1.5.0-0.1) ... 43s Selecting previously unselected package libwebpmux3:amd64. 43s Preparing to unpack .../37-libwebpmux3_1.5.0-0.1_amd64.deb ... 43s Unpacking libwebpmux3:amd64 (1.5.0-0.1) ... 43s Selecting previously unselected package libxslt1.1:amd64. 43s Preparing to unpack .../38-libxslt1.1_1.1.43-0.3_amd64.deb ... 43s Unpacking libxslt1.1:amd64 (1.1.43-0.3) ... 43s Selecting previously unselected package libzopfli1. 43s Preparing to unpack .../39-libzopfli1_1.0.3-3_amd64.deb ... 43s Unpacking libzopfli1 (1.0.3-3) ... 43s Selecting previously unselected package python-matplotlib-data. 43s Preparing to unpack .../40-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 43s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 43s Selecting previously unselected package python3-brotli. 43s Preparing to unpack .../41-python3-brotli_1.1.0-2build6_amd64.deb ... 43s Unpacking python3-brotli (1.1.0-2build6) ... 43s Selecting previously unselected package python3-contourpy. 43s Preparing to unpack .../42-python3-contourpy_1.3.1-1build2_amd64.deb ... 43s Unpacking python3-contourpy (1.3.1-1build2) ... 43s Selecting previously unselected package python3-cpuinfo. 43s Preparing to unpack .../43-python3-cpuinfo_9.0.0+git20221119-3_all.deb ... 43s Unpacking python3-cpuinfo (9.0.0+git20221119-3) ... 43s Selecting previously unselected package python3-cycler. 43s Preparing to unpack .../44-python3-cycler_0.12.1-2_all.deb ... 43s Unpacking python3-cycler (0.12.1-2) ... 43s Selecting previously unselected package python3-dateutil. 43s Preparing to unpack .../45-python3-dateutil_2.9.0-4_all.deb ... 43s Unpacking python3-dateutil (2.9.0-4) ... 44s Selecting previously unselected package python3-decorator. 44s Preparing to unpack .../46-python3-decorator_5.2.1-2_all.deb ... 44s Unpacking python3-decorator (5.2.1-2) ... 44s Selecting previously unselected package python3-edlib:amd64. 44s Preparing to unpack .../47-python3-edlib_1.2.7-7_amd64.deb ... 44s Unpacking python3-edlib:amd64 (1.2.7-7) ... 44s Selecting previously unselected package python3-platformdirs. 44s Preparing to unpack .../48-python3-platformdirs_4.3.7-1_all.deb ... 44s Unpacking python3-platformdirs (4.3.7-1) ... 44s Selecting previously unselected package python3-fs. 44s Preparing to unpack .../49-python3-fs_2.4.16-7_all.deb ... 44s Unpacking python3-fs (2.4.16-7) ... 44s Selecting previously unselected package python3-lxml:amd64. 44s Preparing to unpack .../50-python3-lxml_6.0.1-1build1_amd64.deb ... 44s Unpacking python3-lxml:amd64 (6.0.1-1build1) ... 44s Selecting previously unselected package python3-lz4. 44s Preparing to unpack .../51-python3-lz4_4.4.4+dfsg-3_amd64.deb ... 44s Unpacking python3-lz4 (4.4.4+dfsg-3) ... 44s Selecting previously unselected package python3-scipy. 44s Preparing to unpack .../52-python3-scipy_1.16.3-1_amd64.deb ... 44s Unpacking python3-scipy (1.16.3-1) ... 44s Selecting previously unselected package python3-mpmath. 44s Preparing to unpack .../53-python3-mpmath_1.3.0-1_all.deb ... 44s Unpacking python3-mpmath (1.3.0-1) ... 44s Selecting previously unselected package python3-sympy. 44s Preparing to unpack .../54-python3-sympy_1.13.3-5_all.deb ... 44s Unpacking python3-sympy (1.13.3-5) ... 44s Selecting previously unselected package python3-ufolib2. 44s Preparing to unpack .../55-python3-ufolib2_0.17.1+dfsg1-1_all.deb ... 44s Unpacking python3-ufolib2 (0.17.1+dfsg1-1) ... 44s Selecting previously unselected package python3-unicodedata2. 44s Preparing to unpack .../56-python3-unicodedata2_16.0.0+ds-1build1_amd64.deb ... 44s Unpacking python3-unicodedata2 (16.0.0+ds-1build1) ... 44s Selecting previously unselected package python3-zopfli. 44s Preparing to unpack .../57-python3-zopfli_0.2.3.post1-1_amd64.deb ... 44s Unpacking python3-zopfli (0.2.3.post1-1) ... 44s Selecting previously unselected package unicode-data. 44s Preparing to unpack .../58-unicode-data_16.0.0-1_all.deb ... 44s Unpacking unicode-data (16.0.0-1) ... 44s Selecting previously unselected package python3-fonttools. 44s Preparing to unpack .../59-python3-fonttools_4.57.0-2build1_amd64.deb ... 44s Unpacking python3-fonttools (4.57.0-2build1) ... 44s Selecting previously unselected package python3-kiwisolver. 44s Preparing to unpack .../60-python3-kiwisolver_1.4.10~rc0-1_amd64.deb ... 44s Unpacking python3-kiwisolver (1.4.10~rc0-1) ... 44s Selecting previously unselected package libopenjp2-7:amd64. 44s Preparing to unpack .../61-libopenjp2-7_2.5.3-2.1_amd64.deb ... 44s Unpacking libopenjp2-7:amd64 (2.5.3-2.1) ... 44s Selecting previously unselected package python3-pil:amd64. 44s Preparing to unpack .../62-python3-pil_11.3.0-1ubuntu2_amd64.deb ... 44s Unpacking python3-pil:amd64 (11.3.0-1ubuntu2) ... 44s Selecting previously unselected package python3.14-tk. 44s Preparing to unpack .../63-python3.14-tk_3.14.0-4_amd64.deb ... 44s Unpacking python3.14-tk (3.14.0-4) ... 44s Selecting previously unselected package python3.13-tk. 44s Preparing to unpack .../64-python3.13-tk_3.13.9-1_amd64.deb ... 44s Unpacking python3.13-tk (3.13.9-1) ... 44s Selecting previously unselected package python3-tk:amd64. 44s Preparing to unpack .../65-python3-tk_3.13.9-1_amd64.deb ... 44s Unpacking python3-tk:amd64 (3.13.9-1) ... 44s Selecting previously unselected package python3-pil.imagetk:amd64. 44s Preparing to unpack .../66-python3-pil.imagetk_11.3.0-1ubuntu2_amd64.deb ... 44s Unpacking python3-pil.imagetk:amd64 (11.3.0-1ubuntu2) ... 44s Selecting previously unselected package python3-packaging. 44s Preparing to unpack .../67-python3-packaging_25.0-1_all.deb ... 44s Unpacking python3-packaging (25.0-1) ... 44s Selecting previously unselected package python3-matplotlib. 44s Preparing to unpack .../68-python3-matplotlib_3.10.7+dfsg1-1_amd64.deb ... 44s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 44s Selecting previously unselected package python3-pysam. 44s Preparing to unpack .../69-python3-pysam_0.23.0+ds-1build2_amd64.deb ... 44s Unpacking python3-pysam (0.23.0+ds-1build2) ... 45s Selecting previously unselected package python3-pyspoa. 45s Preparing to unpack .../70-python3-pyspoa_0.2.1-2build2_amd64.deb ... 45s Unpacking python3-pyspoa (0.2.1-2build2) ... 45s Selecting previously unselected package svim. 45s Preparing to unpack .../71-svim_2.0.0-3_all.deb ... 45s Unpacking svim (2.0.0-3) ... 45s Setting up libhtscodecs2:amd64 (1.6.1-2) ... 45s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 45s Setting up liblcms2-2:amd64 (2.16-2) ... 45s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 45s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 45s Setting up libxrender1:amd64 (1:0.9.12-1) ... 45s Setting up python3-lz4 (4.4.4+dfsg-3) ... 45s Setting up python3-unicodedata2 (16.0.0+ds-1build1) ... 45s Setting up fonts-lyx (2.4.4-1) ... 45s Setting up x11-common (1:7.7+24ubuntu1) ... 45s Setting up libdeflate0:amd64 (1.23-2) ... 45s Setting up libqhull-r8.0:amd64 (2020.2-6build1) ... 45s Setting up libgomp1:amd64 (15.2.0-7ubuntu1) ... 45s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 45s Setting up python3-platformdirs (4.3.7-1) ... 45s Setting up python3-fs (2.4.16-7) ... 45s Setting up unicode-data (16.0.0-1) ... 45s Setting up python3-decorator (5.2.1-2) ... 45s Setting up libblas3:amd64 (3.12.1-6build1) ... 45s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 45s Setting up python3-packaging (25.0-1) ... 45s Setting up libzopfli1 (1.0.3-3) ... 45s Setting up python3-brotli (1.1.0-2build6) ... 45s Setting up python3-cycler (0.12.1-2) ... 45s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 45s Setting up fonts-dejavu-mono (2.37-8) ... 45s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 45s Setting up libspoa7.0.0:amd64 (4.1.4-2) ... 45s Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1ubuntu1) ... 45s Setting up libtcl8.6:amd64 (8.6.17+dfsg-1) ... 45s Setting up fonts-dejavu-core (2.37-8) ... 45s Setting up libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 45s Setting up python3-cpuinfo (9.0.0+git20221119-3) ... 46s Setting up libgfortran5:amd64 (15.2.0-7ubuntu1) ... 46s Setting up libwebp7:amd64 (1.5.0-0.1) ... 46s Setting up libxslt1.1:amd64 (1.1.43-0.3) ... 46s Setting up libhts3t64:amd64 (1.21+ds-1) ... 46s Setting up libopenjp2-7:amd64 (2.5.3-2.1) ... 46s Setting up libharfbuzz0b:amd64 (12.1.0-1) ... 46s Setting up python3-dateutil (2.9.0-4) ... 46s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 46s Setting up python3-mpmath (1.3.0-1) ... 46s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 46s Setting up libwebpmux3:amd64 (1.5.0-0.1) ... 46s Setting up python3-edlib:amd64 (1.2.7-7) ... 46s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 46s Setting up python3-sympy (1.13.3-5) ... 49s Setting up python3-pyspoa (0.2.1-2build2) ... 49s Setting up liblapack3:amd64 (3.12.1-6build1) ... 49s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 49s Setting up python3-pysam (0.23.0+ds-1build2) ... 49s Setting up fontconfig-config (2.15.0-2.3ubuntu1) ... 49s Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... 49s Setting up python3-zopfli (0.2.3.post1-1) ... 49s Setting up libraqm0:amd64 (0.10.3-1) ... 49s Setting up python3-numpy (1:2.2.4+ds-1ubuntu1) ... 50s Setting up python3-lxml:amd64 (6.0.1-1build1) ... 51s Setting up libtiff6:amd64 (4.7.0-3ubuntu3) ... 51s Setting up python3-contourpy (1.3.1-1build2) ... 51s Setting up libfontconfig1:amd64 (2.15.0-2.3ubuntu1) ... 51s Setting up libxft2:amd64 (2.3.6-1build1) ... 51s Setting up python3-scipy (1.16.3-1) ... 53s Setting up libtk8.6:amd64 (8.6.17-1) ... 53s Setting up python3.13-tk (3.13.9-1) ... 53s Setting up python3-pil:amd64 (11.3.0-1ubuntu2) ... 53s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 53s Setting up python3.14-tk (3.14.0-4) ... 53s Setting up blt (2.5.3+dfsg-8) ... 53s Setting up python3-tk:amd64 (3.13.9-1) ... 53s Setting up python3-pil.imagetk:amd64 (11.3.0-1ubuntu2) ... 53s Setting up python3-fonttools (4.57.0-2build1) ... 54s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... 54s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 54s Setting up svim (2.0.0-3) ... 55s Processing triggers for libc-bin (2.42-0ubuntu3) ... 55s Processing triggers for man-db (2.13.1-1) ... 56s autopkgtest [11:09:17]: test environment configured for cross building 56s autopkgtest [11:09:17]: test run-unit-test: [----------------------- 57s test_analyze_alignment_file_querysorted (tests.test_Collect.TestCollect.test_analyze_alignment_file_querysorted) ... ok 57s test_bam_iterator (tests.test_Collect.TestCollect.test_bam_iterator) ... ok 57s test_retrieve_primary_alignment_from_supplementary (tests.test_Collect.TestCollect.test_retrieve_primary_alignment_from_supplementary) ... ok 57s test_retrieve_supplementary_alignment_from_primary (tests.test_Collect.TestCollect.test_retrieve_supplementary_alignment_from_primary) ... ok 57s test_downstream_distance_to (tests.test_SVCandidate.DeletionCandidateTestCase.test_downstream_distance_to) ... ok 57s test_get_key (tests.test_SVCandidate.DeletionCandidateTestCase.test_get_key) ... ok 57s test_get_source (tests.test_SVCandidate.DeletionCandidateTestCase.test_get_source) ... ok 57s test_get_std_pos (tests.test_SVCandidate.DeletionCandidateTestCase.test_get_std_pos) ... ok 57s test_get_std_span (tests.test_SVCandidate.DeletionCandidateTestCase.test_get_std_span) ... ok 57s test_get_vcf_entry (tests.test_SVCandidate.DeletionCandidateTestCase.test_get_vcf_entry) ... ok 57s test_accessors (tests.test_Signature.TestSVSignature.test_accessors) ... ok 57s test_as_string (tests.test_Signature.TestSVSignature.test_as_string) ... ok 57s test_downstream_distance_to (tests.test_Signature.TestSVSignature.test_downstream_distance_to) ... ok 57s test_clustering (tests.test_clustering.TestSVIMClustering.test_clustering) ... ok 57s test_partitioning (tests.test_clustering.TestSVIMClustering.test_partitioning) ... ok 57s test_partitioning_large_distance (tests.test_clustering.TestSVIMClustering.test_partitioning_large_distance) ... ok 57s test_scores (tests.test_clustering.TestSVIMClustering.test_scores) ... ok 57s test_simple (tests.test_consensus.TestSVIMConsensus.test_simple) ... ok 57s test_skipping (tests.test_consensus.TestSVIMConsensus.test_skipping) ... ok 57s test_guess_file_type (tests.test_input_parsing.TestInputParsing.test_guess_file_type) ... ok 57s test_is_similar (tests.test_inter.TestSVIMInter.test_is_similar) ... ok 57s test_analyze_cigar_indel (tests.test_intra.TestSVIMIntra.test_analyze_cigar_indel) ... ok 57s test_fetch (tests.test_satag.TestSAExtraction.test_fetch) ... ok 57s test_satag_extraction_complete (tests.test_satag.TestSAExtraction.test_satag_extraction_complete) ... ok 57s test_satag_length (tests.test_satag.TestSAExtraction.test_satag_length) ... ok 57s 57s ---------------------------------------------------------------------- 57s Ran 25 tests in 0.326s 57s 57s OK 57s autopkgtest [11:09:18]: test run-unit-test: -----------------------] 57s run-unit-test PASS 57s autopkgtest [11:09:18]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 58s autopkgtest [11:09:19]: @@@@@@@@@@@@@@@@@@@@ summary 58s run-unit-test PASS