0s autopkgtest [18:08:58]: starting date and time: 2026-01-22 18:08:58+0000 0s autopkgtest [18:08:58]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [18:08:58]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.wo184afc/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade sniffles --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.14.2-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-5.secgroup --name adt-resolute-i386-sniffles-20260122-180858-juju-7f2275-prod-proposed-migration-environment-2-389efd28-0ace-4131-a359-800b5639c1b4 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 5s Creating nova instance adt-resolute-i386-sniffles-20260122-180858-juju-7f2275-prod-proposed-migration-environment-2-389efd28-0ace-4131-a359-800b5639c1b4 from image adt/ubuntu-resolute-amd64-server-20260122.img (UUID d51ec989-51d3-406a-bc50-4c9902afb6a4)... 79s autopkgtest [18:10:17]: testbed dpkg architecture: amd64 79s autopkgtest [18:10:17]: testbed apt version: 3.1.12 80s autopkgtest [18:10:18]: @@@@@@@@@@@@@@@@@@@@ test bed setup 80s autopkgtest [18:10:18]: testbed release detected to be: None 80s autopkgtest [18:10:18]: updating testbed package index (apt update) 81s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 81s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 81s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 81s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 81s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 81s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [80.9 kB] 81s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [815 kB] 81s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [19.2 kB] 81s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [91.2 kB] 81s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [111 kB] 81s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [3240 B] 81s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3696 B] 81s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [12.3 kB] 81s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [120 B] 81s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [668 kB] 82s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [347 kB] 82s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [20.4 kB] 82s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [5548 B] 82s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [2912 B] 82s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [568 B] 82s Fetched 2309 kB in 1s (1706 kB/s) 83s Reading package lists... 83s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 83s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 83s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 84s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 84s Reading package lists... 84s Reading package lists... 84s Building dependency tree... 84s Reading state information... 84s Calculating upgrade... 85s The following packages were automatically installed and are no longer required: 85s python3.13 python3.13-minimal 85s Use 'sudo apt autoremove' to remove them. 85s The following NEW packages will be installed: 85s libpython3.14-minimal libpython3.14-stdlib linux-headers-6.18.0-9 85s linux-headers-6.18.0-9-generic linux-image-6.18.0-9-generic 85s linux-modules-6.18.0-9-generic linux-tools-6.18.0-9 85s linux-tools-6.18.0-9-generic python3.14 python3.14-minimal 85s The following packages will be upgraded: 85s bpftool libpython3-stdlib linux-generic linux-headers-generic 85s linux-headers-virtual linux-image-generic linux-image-virtual linux-libc-dev 85s linux-perf linux-tools-common linux-virtual python3 python3-gdbm 85s python3-minimal 85s 14 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. 85s Need to get 220 MB of archives. 85s After this operation, 336 MB of additional disk space will be used. 85s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB] 85s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-minimal amd64 3.14.2-1 [2563 kB] 85s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-gdbm amd64 3.14.2-1 [11.1 kB] 85s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-minimal amd64 3.14.2-1 [28.2 kB] 85s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3 amd64 3.14.2-1 [22.9 kB] 85s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB] 85s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14 amd64 3.14.2-1 [816 kB] 85s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpython3-stdlib amd64 3.14.2-1 [10.9 kB] 85s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 bpftool amd64 7.7.0+6.18.0-9.9 [1256 kB] 85s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-modules-6.18.0-9-generic amd64 6.18.0-9.9 [168 MB] 90s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-6.18.0-9-generic amd64 6.18.0-9.9 [16.5 MB] 90s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-generic amd64 6.18.0-9.9+1 [1696 B] 90s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-generic amd64 6.18.0-9.9+1 [12.2 kB] 90s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-virtual amd64 6.18.0-9.9+1 [1692 B] 90s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-virtual amd64 6.18.0-9.9+1 [12.1 kB] 90s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-virtual amd64 6.18.0-9.9+1 [1648 B] 90s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.18.0-9 all 6.18.0-9.9 [14.9 MB] 91s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.18.0-9-generic amd64 6.18.0-9.9 [4290 kB] 91s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-generic amd64 6.18.0-9.9+1 [12.0 kB] 91s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.18.0-9.9 [1860 kB] 91s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-perf amd64 6.18.0-9.9 [4480 kB] 91s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-common all 6.18.0-9.9 [377 kB] 91s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.18.0-9 amd64 6.18.0-9.9 [1510 kB] 91s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.18.0-9-generic amd64 6.18.0-9.9 [1608 B] 91s dpkg-preconfigure: unable to re-open stdin: No such file or directory 91s Fetched 220 MB in 7s (33.0 MB/s) 91s Selecting previously unselected package libpython3.14-minimal:amd64. 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83885 files and directories currently installed.) 92s Preparing to unpack .../libpython3.14-minimal_3.14.2-1_amd64.deb ... 92s Unpacking libpython3.14-minimal:amd64 (3.14.2-1) ... 92s Selecting previously unselected package python3.14-minimal. 92s Preparing to unpack .../python3.14-minimal_3.14.2-1_amd64.deb ... 92s Unpacking python3.14-minimal (3.14.2-1) ... 92s Preparing to unpack .../python3-gdbm_3.14.2-1_amd64.deb ... 92s Unpacking python3-gdbm (3.14.2-1) over (3.13.9-1) ... 92s Setting up libpython3.14-minimal:amd64 (3.14.2-1) ... 92s Setting up python3.14-minimal (3.14.2-1) ... 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84227 files and directories currently installed.) 92s Preparing to unpack .../python3-minimal_3.14.2-1_amd64.deb ... 92s Unpacking python3-minimal (3.14.2-1) over (3.13.7-1) ... 92s Setting up python3-minimal (3.14.2-1) ... 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84227 files and directories currently installed.) 93s Preparing to unpack .../00-python3_3.14.2-1_amd64.deb ... 93s running python pre-rtupdate hooks for python3.14... 93s Unpacking python3 (3.14.2-1) over (3.13.7-1) ... 93s Selecting previously unselected package libpython3.14-stdlib:amd64. 93s Preparing to unpack .../01-libpython3.14-stdlib_3.14.2-1_amd64.deb ... 93s Unpacking libpython3.14-stdlib:amd64 (3.14.2-1) ... 93s Selecting previously unselected package python3.14. 93s Preparing to unpack .../02-python3.14_3.14.2-1_amd64.deb ... 93s Unpacking python3.14 (3.14.2-1) ... 93s Preparing to unpack .../03-libpython3-stdlib_3.14.2-1_amd64.deb ... 93s Unpacking libpython3-stdlib:amd64 (3.14.2-1) over (3.13.7-1) ... 93s Preparing to unpack .../04-bpftool_7.7.0+6.18.0-9.9_amd64.deb ... 93s Unpacking bpftool (7.7.0+6.18.0-9.9) over (7.7.0+6.18.0-8.8) ... 93s Selecting previously unselected package linux-modules-6.18.0-9-generic. 93s Preparing to unpack .../05-linux-modules-6.18.0-9-generic_6.18.0-9.9_amd64.deb ... 93s Unpacking linux-modules-6.18.0-9-generic (6.18.0-9.9) ... 94s Selecting previously unselected package linux-image-6.18.0-9-generic. 94s Preparing to unpack .../06-linux-image-6.18.0-9-generic_6.18.0-9.9_amd64.deb ... 94s Unpacking linux-image-6.18.0-9-generic (6.18.0-9.9) ... 94s Preparing to unpack .../07-linux-generic_6.18.0-9.9+1_amd64.deb ... 94s Unpacking linux-generic (6.18.0-9.9+1) over (6.18.0-8.8) ... 94s Preparing to unpack .../08-linux-image-generic_6.18.0-9.9+1_amd64.deb ... 94s Unpacking linux-image-generic (6.18.0-9.9+1) over (6.18.0-8.8) ... 94s Preparing to unpack .../09-linux-virtual_6.18.0-9.9+1_amd64.deb ... 94s Unpacking linux-virtual (6.18.0-9.9+1) over (6.18.0-8.8) ... 94s Preparing to unpack .../10-linux-image-virtual_6.18.0-9.9+1_amd64.deb ... 94s Unpacking linux-image-virtual (6.18.0-9.9+1) over (6.18.0-8.8) ... 94s Preparing to unpack .../11-linux-headers-virtual_6.18.0-9.9+1_amd64.deb ... 94s Unpacking linux-headers-virtual (6.18.0-9.9+1) over (6.18.0-8.8) ... 94s Selecting previously unselected package linux-headers-6.18.0-9. 94s Preparing to unpack .../12-linux-headers-6.18.0-9_6.18.0-9.9_all.deb ... 94s Unpacking linux-headers-6.18.0-9 (6.18.0-9.9) ... 95s Selecting previously unselected package linux-headers-6.18.0-9-generic. 95s Preparing to unpack .../13-linux-headers-6.18.0-9-generic_6.18.0-9.9_amd64.deb ... 95s Unpacking linux-headers-6.18.0-9-generic (6.18.0-9.9) ... 96s Preparing to unpack .../14-linux-headers-generic_6.18.0-9.9+1_amd64.deb ... 96s Unpacking linux-headers-generic (6.18.0-9.9+1) over (6.18.0-8.8) ... 96s Preparing to unpack .../15-linux-libc-dev_6.18.0-9.9_amd64.deb ... 96s Unpacking linux-libc-dev:amd64 (6.18.0-9.9) over (6.18.0-8.8) ... 96s Preparing to unpack .../16-linux-perf_6.18.0-9.9_amd64.deb ... 96s Unpacking linux-perf (6.18.0-9.9) over (6.18.0-8.8) ... 96s Preparing to unpack .../17-linux-tools-common_6.18.0-9.9_all.deb ... 96s Unpacking linux-tools-common (6.18.0-9.9) over (6.18.0-8.8) ... 96s Selecting previously unselected package linux-tools-6.18.0-9. 96s Preparing to unpack .../18-linux-tools-6.18.0-9_6.18.0-9.9_amd64.deb ... 96s Unpacking linux-tools-6.18.0-9 (6.18.0-9.9) ... 96s Selecting previously unselected package linux-tools-6.18.0-9-generic. 96s Preparing to unpack .../19-linux-tools-6.18.0-9-generic_6.18.0-9.9_amd64.deb ... 96s Unpacking linux-tools-6.18.0-9-generic (6.18.0-9.9) ... 96s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ... 96s Setting up bpftool (7.7.0+6.18.0-9.9) ... 96s Setting up linux-libc-dev:amd64 (6.18.0-9.9) ... 96s Setting up linux-perf (6.18.0-9.9) ... 96s Setting up linux-headers-6.18.0-9 (6.18.0-9.9) ... 96s Setting up linux-modules-6.18.0-9-generic (6.18.0-9.9) ... 98s Setting up python3.14 (3.14.2-1) ... 98s Setting up linux-image-6.18.0-9-generic (6.18.0-9.9) ... 100s I: /boot/vmlinuz is now a symlink to vmlinuz-6.18.0-9-generic 100s I: /boot/initrd.img is now a symlink to initrd.img-6.18.0-9-generic 100s Setting up linux-tools-common (6.18.0-9.9) ... 100s Setting up libpython3-stdlib:amd64 (3.14.2-1) ... 100s Setting up linux-headers-6.18.0-9-generic (6.18.0-9.9) ... 100s Setting up linux-image-generic (6.18.0-9.9+1) ... 100s Setting up python3-gdbm (3.14.2-1) ... 100s Setting up linux-tools-6.18.0-9 (6.18.0-9.9) ... 100s Setting up python3 (3.14.2-1) ... 100s running python rtupdate hooks for python3.14... 100s running python post-rtupdate hooks for python3.14... 100s Setting up linux-headers-generic (6.18.0-9.9+1) ... 100s Setting up linux-image-virtual (6.18.0-9.9+1) ... 100s Setting up linux-headers-virtual (6.18.0-9.9+1) ... 100s Setting up linux-generic (6.18.0-9.9+1) ... 100s Setting up linux-tools-6.18.0-9-generic (6.18.0-9.9) ... 100s Setting up linux-virtual (6.18.0-9.9+1) ... 100s Processing triggers for man-db (2.13.1-1) ... 101s Processing triggers for systemd (259-1ubuntu2) ... 101s Processing triggers for linux-image-6.18.0-9-generic (6.18.0-9.9) ... 101s /etc/kernel/postinst.d/initramfs-tools: 101s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 105s /etc/kernel/postinst.d/zz-update-grub: 105s Sourcing file `/etc/default/grub' 105s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 105s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 105s Generating grub configuration file ... 105s Found linux image: /boot/vmlinuz-6.18.0-9-generic 105s Found initrd image: /boot/initrd.img-6.18.0-9-generic 105s Found linux image: /boot/vmlinuz-6.18.0-8-generic 105s Found initrd image: /boot/initrd.img-6.18.0-8-generic 105s Warning: os-prober will not be executed to detect other bootable partitions. 105s Systems on them will not be added to the GRUB boot configuration. 105s Check GRUB_DISABLE_OS_PROBER documentation entry. 105s Adding boot menu entry for UEFI Firmware Settings ... 105s done 105s autopkgtest [18:10:43]: upgrading testbed (apt dist-upgrade and autopurge) 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 106s Calculating upgrade... 106s The following packages were automatically installed and are no longer required: 106s python3.13 python3.13-minimal 106s Use 'sudo apt autoremove' to remove them. 106s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 106s Solving dependencies... 106s The following packages will be REMOVED: 106s python3.13* python3.13-minimal* 107s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 107s After this operation, 7860 kB disk space will be freed. 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124951 files and directories currently installed.) 107s Removing python3.13 (3.13.11-1) ... 107s Removing python3.13-minimal (3.13.11-1) ... 107s Processing triggers for man-db (2.13.1-1) ... 108s Processing triggers for systemd (259-1ubuntu2) ... 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124924 files and directories currently installed.) 108s Purging configuration files for python3.13-minimal (3.13.11-1) ... 108s autopkgtest [18:10:46]: rebooting testbed after setup commands that affected boot 218s autopkgtest [18:12:36]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:49:02 UTC 2026 220s autopkgtest [18:12:38]: @@@@@@@@@@@@@@@@@@@@ apt-source sniffles 222s Get:1 http://ftpmaster.internal/ubuntu resolute/universe sniffles 2.6.0-1 (dsc) [2056 B] 222s Get:2 http://ftpmaster.internal/ubuntu resolute/universe sniffles 2.6.0-1 (tar) [2917 kB] 222s Get:3 http://ftpmaster.internal/ubuntu resolute/universe sniffles 2.6.0-1 (diff) [8416 B] 222s gpgv: Signature made Sat Feb 15 22:05:44 2025 UTC 222s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 222s gpgv: issuer "tille@debian.org" 222s gpgv: Can't check signature: No public key 222s dpkg-source: warning: cannot verify inline signature for ./sniffles_2.6.0-1.dsc: no acceptable signature found 222s autopkgtest [18:12:40]: testing package sniffles version 2.6.0-1 222s autopkgtest [18:12:40]: build not needed 223s autopkgtest [18:12:41]: test run-unit-test: preparing testbed 223s Reading package lists... 223s Building dependency tree... 223s Reading state information... 224s Solving dependencies... 224s The following NEW packages will be installed: 224s libdeflate0 libhts3t64 libhtscodecs2 python3-edlib python3-psutil 224s python3-pysam sniffles 224s 0 upgraded, 7 newly installed, 0 to remove and 0 not upgraded. 224s Need to get 5528 kB of archives. 224s After this operation, 46.8 MB of additional disk space will be used. 224s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 224s Get:2 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhtscodecs2 amd64 1.6.1-2 [132 kB] 224s Get:3 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhts3t64 amd64 1.22.1+ds2-1 [461 kB] 224s Get:4 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-edlib amd64 1.2.7-7 [99.4 kB] 224s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-psutil amd64 7.1.0-1ubuntu1 [191 kB] 224s Get:6 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pysam amd64 0.23.3+ds-2 [4536 kB] 224s Get:7 http://ftpmaster.internal/ubuntu resolute/universe amd64 sniffles all 2.6.0-1 [58.5 kB] 224s Fetched 5528 kB in 0s (24.2 MB/s) 224s Selecting previously unselected package libdeflate0:amd64. 224s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124926 files and directories currently installed.) 224s Preparing to unpack .../0-libdeflate0_1.23-2_amd64.deb ... 224s Unpacking libdeflate0:amd64 (1.23-2) ... 224s Selecting previously unselected package libhtscodecs2:amd64. 224s Preparing to unpack .../1-libhtscodecs2_1.6.1-2_amd64.deb ... 224s Unpacking libhtscodecs2:amd64 (1.6.1-2) ... 224s Selecting previously unselected package libhts3t64:amd64. 224s Preparing to unpack .../2-libhts3t64_1.22.1+ds2-1_amd64.deb ... 224s Unpacking libhts3t64:amd64 (1.22.1+ds2-1) ... 224s Selecting previously unselected package python3-edlib:amd64. 224s Preparing to unpack .../3-python3-edlib_1.2.7-7_amd64.deb ... 224s Unpacking python3-edlib:amd64 (1.2.7-7) ... 224s Selecting previously unselected package python3-psutil. 224s Preparing to unpack .../4-python3-psutil_7.1.0-1ubuntu1_amd64.deb ... 224s Unpacking python3-psutil (7.1.0-1ubuntu1) ... 224s Selecting previously unselected package python3-pysam. 224s Preparing to unpack .../5-python3-pysam_0.23.3+ds-2_amd64.deb ... 224s Unpacking python3-pysam (0.23.3+ds-2) ... 224s Selecting previously unselected package sniffles. 224s Preparing to unpack .../6-sniffles_2.6.0-1_all.deb ... 224s Unpacking sniffles (2.6.0-1) ... 224s Setting up libhtscodecs2:amd64 (1.6.1-2) ... 224s Setting up libdeflate0:amd64 (1.23-2) ... 224s Setting up python3-psutil (7.1.0-1ubuntu1) ... 225s Setting up libhts3t64:amd64 (1.22.1+ds2-1) ... 225s Setting up python3-edlib:amd64 (1.2.7-7) ... 225s Setting up python3-pysam (0.23.3+ds-2) ... 225s Setting up sniffles (2.6.0-1) ... 225s Processing triggers for man-db (2.13.1-1) ... 225s Processing triggers for libc-bin (2.42-2ubuntu4) ... 226s autopkgtest [18:12:44]: test environment configured for cross building 226s autopkgtest [18:12:44]: test run-unit-test: [----------------------- 227s 2026-01-22 18:12:44,747 INFO sniffles.main (1673): Running Sniffles2, build 2.6.0 227s 2026-01-22 18:12:44,748 INFO sniffles.main (1673): Run Mode: call_sample 227s 2026-01-22 18:12:44,748 INFO sniffles.main (1673): Start on: 2026/01/22 18:12:44 227s 2026-01-22 18:12:44,748 INFO sniffles.main (1673): Working dir: /tmp/autopkgtest.UQB0rS/autopkgtest_tmp 227s 2026-01-22 18:12:44,748 INFO sniffles.main (1673): Used command: /usr/bin/sniffles --input test.bam --snf test.snf 227s 2026-01-22 18:12:44,748 INFO sniffles.main (1673): ============================== 227s 2026-01-22 18:12:44,757 INFO sniffles.main (1673): Opening for reading: test.bam 227s 2026-01-22 18:12:44,757 INFO sniffles.main (1673): Opening for writing: test.snf 227s 2026-01-22 18:12:44,760 INFO sniffles.main (1673): 227s 2026-01-22 18:12:44,760 INFO sniffles.main (1673): Analyzing 1 alignments total... 227s 2026-01-22 18:12:44,760 INFO sniffles.main (1673): 227s 2026-01-22 18:12:44,760 INFO sniffles.worker (1673): Starting worker 0 227s 2026-01-22 18:12:44,763 ERROR sniffles.main (1673): Unhandled error while running sniffles. 227s Traceback (most recent call last): 227s File "/usr/bin/sniffles", line 580, in 227s Sniffles2_Main(processes) 227s ~~~~~~~~~~~~~~^^^^^^^^^^^ 227s File "/usr/bin/sniffles", line 492, in Sniffles2_Main 227s p.start() 227s ~~~~~~~^^ 227s File "/usr/lib/python3/dist-packages/sniffles/parallel.py", line 522, in start 227s self.process.start() 227s ~~~~~~~~~~~~~~~~~~^^ 227s File "/usr/lib/python3.14/multiprocessing/process.py", line 121, in start 227s self._popen = self._Popen(self) 227s ~~~~~~~~~~~^^^^^^ 227s File "/usr/lib/python3.14/multiprocessing/context.py", line 224, in _Popen 227s return _default_context.get_context().Process._Popen(process_obj) 227s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^ 227s File "/usr/lib/python3.14/multiprocessing/context.py", line 300, in _Popen 227s return Popen(process_obj) 227s File "/usr/lib/python3.14/multiprocessing/popen_forkserver.py", line 35, in __init__ 227s super().__init__(process_obj) 227s ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^ 227s File "/usr/lib/python3.14/multiprocessing/popen_fork.py", line 20, in __init__ 227s self._launch(process_obj) 227s ~~~~~~~~~~~~^^^^^^^^^^^^^ 227s File "/usr/lib/python3.14/multiprocessing/popen_forkserver.py", line 47, in _launch 227s reduction.dump(process_obj, buf) 227s ~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^ 227s File "/usr/lib/python3.14/multiprocessing/reduction.py", line 60, in dump 227s ForkingPickler(file, protocol).dump(obj) 227s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^ 227s TypeError: cannot pickle '_thread.RLock' object 227s when serializing dict item '_lock' 227s when serializing psutil.Process state 227s when serializing psutil.Process object 227s when serializing dict item '_process' 227s when serializing sniffles.utils.resmon.ResourceMonitor state 227s when serializing sniffles.utils.resmon.ResourceMonitor object 227s when serializing dict item 'recycle' 227s when serializing sniffles.parallel.SnifflesWorker state 227s when serializing sniffles.parallel.SnifflesWorker object 227s when serializing tuple item 0 227s when serializing method reconstructor arguments 227s when serializing method object 227s when serializing dict item '_target' 227s when serializing multiprocessing.context.Process state 227s when serializing multiprocessing.context.Process object 227s autopkgtest [18:12:45]: test run-unit-test: -----------------------] 227s run-unit-test FAIL non-zero exit status 1 227s autopkgtest [18:12:45]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 228s autopkgtest [18:12:46]: @@@@@@@@@@@@@@@@@@@@ summary 228s run-unit-test FAIL non-zero exit status 1