0s autopkgtest [20:27:23]: starting date and time: 2026-01-23 20:27:23+0000 0s autopkgtest [20:27:23]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [20:27:23]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.4blb3s2t/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:graphviz,src:apbs,src:binutils,src:ccls,src:cp2k,src:createrepo-c,src:gcc-11,src:gcc-12,src:gcc-13,src:gcc-14,src:gcc-15,src:gcc-snapshot,src:gdm3,src:hkl,src:hmmer,src:ktimetracker,src:libixion,src:liborcus,src:libpeas,src:libpeas2,src:libreoffice,src:libsndfile,src:libzstd,src:link-grammar,src:mosquitto,src:orthanc-python,src:psychopy,src:pyside2,src:python3-defaults,src:rumur,src:systemd,src:tifffile,src:vim --apt-upgrade snakemake --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=graphviz/14.1.1-2ubuntu3 apbs/3.4.1-7build1 binutils/2.45.50.20260119-1ubuntu1 ccls/0.20250815-0ubuntu1 cp2k/2025.2-3 createrepo-c/1.2.1-2build1 gcc-11/11.5.0-8ubuntu1 gcc-12/12.5.0-7ubuntu1 gcc-13/13.4.0-5ubuntu1 gcc-14/14.3.0-11ubuntu1 gcc-15/15.2.0-12ubuntu1 gcc-snapshot/1:20260121-1ubuntu1 gdm3/50~alpha.1-0ubuntu1 hkl/5.1.4-1 hmmer/3.4+dfsg-3 ktimetracker/4:6.0.0-1build1 libixion/0.20.0-6build1 liborcus/0.21.0-2build1 libpeas/1.36.0-8build1 libpeas2/2.2.0-2build1 libreoffice/4:25.8.4~rc2-0ubuntu2 libsndfile/1.2.2-4 libzstd/1.5.7+dfsg-3 link-grammar/5.13.0+dfsg-1build1 mosquitto/2.0.22-5 orthanc-python/7.0+ds-1build1 psychopy/2023.2.4+dfsg-4 pyside2/5.15.18-1 python3-defaults/3.14.2-1 rumur/2025.08.31-1 systemd/259-1ubuntu3 tifffile/20260114-1 vim/2:9.1.1882-1ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-14.secgroup --name adt-resolute-i386-snakemake-20260123-202722-juju-7f2275-prod-proposed-migration-environment-2-c3b0b284-15b5-4ceb-ac8c-cba555c2d60d --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-i386-snakemake-20260123-202722-juju-7f2275-prod-proposed-migration-environment-2-c3b0b284-15b5-4ceb-ac8c-cba555c2d60d from image adt/ubuntu-resolute-amd64-server-20260123.img (UUID 789dbc23-4f1b-4e7c-bcab-98e6eebf04f2)... 71s autopkgtest [20:28:34]: testbed dpkg architecture: amd64 71s autopkgtest [20:28:34]: testbed apt version: 3.1.13 72s autopkgtest [20:28:35]: @@@@@@@@@@@@@@@@@@@@ test bed setup 72s autopkgtest [20:28:35]: testbed release detected to be: None 72s autopkgtest [20:28:35]: updating testbed package index (apt update) 72s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 72s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 73s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 73s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 73s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [23.6 kB] 73s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [97.3 kB] 73s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 73s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1026 kB] 73s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [121 kB] 73s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [102 kB] 73s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [3808 B] 73s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [12.3 kB] 73s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3696 B] 73s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 73s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [934 kB] 73s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [392 kB] 73s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [23.8 kB] 73s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [4704 B] 73s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [11.6 kB] 73s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [668 B] 74s Fetched 2885 kB in 1s (2922 kB/s) 74s Reading package lists... 75s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 75s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 75s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 75s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 76s Reading package lists... 76s Reading package lists... 76s Building dependency tree... 76s Reading state information... 76s Calculating upgrade... 76s The following packages were automatically installed and are no longer required: 76s python3.13 python3.13-minimal 76s Use 'sudo apt autoremove' to remove them. 76s The following NEW packages will be installed: 76s libpython3.14-minimal libpython3.14-stdlib libsframe3 python3.14 76s python3.14-minimal 76s The following packages will be upgraded: 76s binutils binutils-common binutils-x86-64-linux-gnu gcc-15-base libatomic1 76s libbinutils libctf-nobfd0 libctf0 libgcc-s1 libgprofng0 libnss-systemd 76s libpam-systemd libplymouth5 libpython3-stdlib libstdc++6 libsystemd-shared 76s libsystemd0 libtasn1-6 libudev1 libzstd1 plymouth plymouth-theme-ubuntu-text 76s python3 python3-gdbm python3-jaraco.context python3-minimal systemd 76s systemd-cryptsetup systemd-resolved systemd-sysv systemd-userdbd udev 76s vim-common vim-tiny xxd zstd 76s 36 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. 76s Need to get 22.6 MB of archives. 76s After this operation, 24.6 MB of additional disk space will be used. 76s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB] 76s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-minimal amd64 3.14.2-1 [2563 kB] 76s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-minimal amd64 3.14.2-1 [28.2 kB] 76s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3 amd64 3.14.2-1 [22.9 kB] 76s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libzstd1 amd64 1.5.7+dfsg-3 [308 kB] 76s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB] 76s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14 amd64 3.14.2-1 [816 kB] 76s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpython3-stdlib amd64 3.14.2-1 [10.9 kB] 76s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 systemd-userdbd amd64 259-1ubuntu3 [52.0 kB] 76s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libnss-systemd amd64 259-1ubuntu3 [289 kB] 76s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libsystemd0 amd64 259-1ubuntu3 [543 kB] 76s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 systemd-sysv amd64 259-1ubuntu3 [9248 B] 76s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 systemd-resolved amd64 259-1ubuntu3 [298 kB] 76s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpam-systemd amd64 259-1ubuntu3 [273 kB] 76s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libsystemd-shared amd64 259-1ubuntu3 [2519 kB] 76s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 systemd amd64 259-1ubuntu3 [3120 kB] 76s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 systemd-cryptsetup amd64 259-1ubuntu3 [124 kB] 77s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 udev amd64 259-1ubuntu3 [1487 kB] 77s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libudev1 amd64 259-1ubuntu3 [213 kB] 77s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libstdc++6 amd64 15.2.0-12ubuntu1 [813 kB] 77s Get:21 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libatomic1 amd64 15.2.0-12ubuntu1 [10.5 kB] 77s Get:22 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 gcc-15-base amd64 15.2.0-12ubuntu1 [59.6 kB] 77s Get:23 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libgcc-s1 amd64 15.2.0-12ubuntu1 [78.0 kB] 77s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libtasn1-6 amd64 4.21.0-2 [45.3 kB] 77s Get:25 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 vim-tiny amd64 2:9.1.1882-1ubuntu2 [874 kB] 77s Get:26 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 vim-common all 2:9.1.1882-1ubuntu2 [402 kB] 77s Get:27 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 xxd amd64 2:9.1.1882-1ubuntu2 [70.8 kB] 77s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libplymouth5 amd64 24.004.60+git20250831.4a3c171d-0ubuntu5 [143 kB] 77s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 plymouth-theme-ubuntu-text amd64 24.004.60+git20250831.4a3c171d-0ubuntu5 [10.2 kB] 77s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 plymouth amd64 24.004.60+git20250831.4a3c171d-0ubuntu5 [135 kB] 77s Get:31 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-gdbm amd64 3.14.2-1 [11.1 kB] 77s Get:32 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libgprofng0 amd64 2.45.50.20260119-1ubuntu1 [899 kB] 77s Get:33 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libctf0 amd64 2.45.50.20260119-1ubuntu1 [100 kB] 77s Get:34 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libctf-nobfd0 amd64 2.45.50.20260119-1ubuntu1 [102 kB] 77s Get:35 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.45.50.20260119-1ubuntu1 [1163 kB] 77s Get:36 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libbinutils amd64 2.45.50.20260119-1ubuntu1 [590 kB] 77s Get:37 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 binutils amd64 2.45.50.20260119-1ubuntu1 [224 kB] 77s Get:38 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 binutils-common amd64 2.45.50.20260119-1ubuntu1 [222 kB] 77s Get:39 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libsframe3 amd64 2.45.50.20260119-1ubuntu1 [20.7 kB] 77s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-jaraco.context all 6.0.1-2 [8198 B] 77s Get:41 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 zstd amd64 1.5.7+dfsg-3 [672 kB] 77s dpkg-preconfigure: unable to re-open stdin: No such file or directory 77s Fetched 22.6 MB in 1s (26.2 MB/s) 77s Selecting previously unselected package libpython3.14-minimal:amd64. 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124176 files and directories currently installed.) 77s Preparing to unpack .../libpython3.14-minimal_3.14.2-1_amd64.deb ... 77s Unpacking libpython3.14-minimal:amd64 (3.14.2-1) ... 77s Selecting previously unselected package python3.14-minimal. 77s Preparing to unpack .../python3.14-minimal_3.14.2-1_amd64.deb ... 77s Unpacking python3.14-minimal (3.14.2-1) ... 77s Setting up libpython3.14-minimal:amd64 (3.14.2-1) ... 77s Setting up python3.14-minimal (3.14.2-1) ... 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124518 files and directories currently installed.) 78s Preparing to unpack .../python3-minimal_3.14.2-1_amd64.deb ... 78s Unpacking python3-minimal (3.14.2-1) over (3.13.9-3) ... 78s Setting up python3-minimal (3.14.2-1) ... 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124518 files and directories currently installed.) 78s Preparing to unpack .../python3_3.14.2-1_amd64.deb ... 78s running python pre-rtupdate hooks for python3.14... 78s Unpacking python3 (3.14.2-1) over (3.13.9-3) ... 78s Preparing to unpack .../libzstd1_1.5.7+dfsg-3_amd64.deb ... 78s Unpacking libzstd1:amd64 (1.5.7+dfsg-3) over (1.5.7+dfsg-2) ... 78s Setting up libzstd1:amd64 (1.5.7+dfsg-3) ... 78s Selecting previously unselected package libpython3.14-stdlib:amd64. 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124519 files and directories currently installed.) 78s Preparing to unpack .../0-libpython3.14-stdlib_3.14.2-1_amd64.deb ... 78s Unpacking libpython3.14-stdlib:amd64 (3.14.2-1) ... 78s Selecting previously unselected package python3.14. 78s Preparing to unpack .../1-python3.14_3.14.2-1_amd64.deb ... 78s Unpacking python3.14 (3.14.2-1) ... 78s Preparing to unpack .../2-libpython3-stdlib_3.14.2-1_amd64.deb ... 78s Unpacking libpython3-stdlib:amd64 (3.14.2-1) over (3.13.9-3) ... 78s Preparing to unpack .../3-systemd-userdbd_259-1ubuntu3_amd64.deb ... 78s Unpacking systemd-userdbd (259-1ubuntu3) over (259-1ubuntu2) ... 79s Preparing to unpack .../4-libnss-systemd_259-1ubuntu3_amd64.deb ... 79s Unpacking libnss-systemd:amd64 (259-1ubuntu3) over (259-1ubuntu2) ... 79s Preparing to unpack .../5-libsystemd0_259-1ubuntu3_amd64.deb ... 79s Unpacking libsystemd0:amd64 (259-1ubuntu3) over (259-1ubuntu2) ... 79s Setting up libsystemd0:amd64 (259-1ubuntu3) ... 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124950 files and directories currently installed.) 79s Preparing to unpack .../systemd-sysv_259-1ubuntu3_amd64.deb ... 79s Unpacking systemd-sysv (259-1ubuntu3) over (259-1ubuntu2) ... 79s Preparing to unpack .../systemd-resolved_259-1ubuntu3_amd64.deb ... 79s Unpacking systemd-resolved (259-1ubuntu3) over (259-1ubuntu2) ... 79s Preparing to unpack .../libpam-systemd_259-1ubuntu3_amd64.deb ... 79s Unpacking libpam-systemd:amd64 (259-1ubuntu3) over (259-1ubuntu2) ... 79s Preparing to unpack .../libsystemd-shared_259-1ubuntu3_amd64.deb ... 79s Unpacking libsystemd-shared:amd64 (259-1ubuntu3) over (259-1ubuntu2) ... 79s Setting up libsystemd-shared:amd64 (259-1ubuntu3) ... 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124950 files and directories currently installed.) 79s Preparing to unpack .../systemd_259-1ubuntu3_amd64.deb ... 79s Unpacking systemd (259-1ubuntu3) over (259-1ubuntu2) ... 79s Preparing to unpack .../systemd-cryptsetup_259-1ubuntu3_amd64.deb ... 79s Unpacking systemd-cryptsetup (259-1ubuntu3) over (259-1ubuntu2) ... 79s Preparing to unpack .../udev_259-1ubuntu3_amd64.deb ... 79s Unpacking udev (259-1ubuntu3) over (259-1ubuntu2) ... 79s Preparing to unpack .../libudev1_259-1ubuntu3_amd64.deb ... 79s Unpacking libudev1:amd64 (259-1ubuntu3) over (259-1ubuntu2) ... 79s Setting up libudev1:amd64 (259-1ubuntu3) ... 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124950 files and directories currently installed.) 79s Preparing to unpack .../libstdc++6_15.2.0-12ubuntu1_amd64.deb ... 79s Unpacking libstdc++6:amd64 (15.2.0-12ubuntu1) over (15.2.0-11ubuntu1) ... 79s Preparing to unpack .../libatomic1_15.2.0-12ubuntu1_amd64.deb ... 79s Unpacking libatomic1:amd64 (15.2.0-12ubuntu1) over (15.2.0-11ubuntu1) ... 79s Preparing to unpack .../gcc-15-base_15.2.0-12ubuntu1_amd64.deb ... 79s Unpacking gcc-15-base:amd64 (15.2.0-12ubuntu1) over (15.2.0-11ubuntu1) ... 79s Setting up gcc-15-base:amd64 (15.2.0-12ubuntu1) ... 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124950 files and directories currently installed.) 79s Preparing to unpack .../libgcc-s1_15.2.0-12ubuntu1_amd64.deb ... 79s Unpacking libgcc-s1:amd64 (15.2.0-12ubuntu1) over (15.2.0-11ubuntu1) ... 79s Setting up libgcc-s1:amd64 (15.2.0-12ubuntu1) ... 80s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124950 files and directories currently installed.) 80s Preparing to unpack .../00-libtasn1-6_4.21.0-2_amd64.deb ... 80s Unpacking libtasn1-6:amd64 (4.21.0-2) over (4.20.0-2ubuntu1) ... 80s Preparing to unpack .../01-vim-tiny_2%3a9.1.1882-1ubuntu2_amd64.deb ... 80s Unpacking vim-tiny (2:9.1.1882-1ubuntu2) over (2:9.1.1882-1ubuntu1) ... 80s Preparing to unpack .../02-vim-common_2%3a9.1.1882-1ubuntu2_all.deb ... 80s Unpacking vim-common (2:9.1.1882-1ubuntu2) over (2:9.1.1882-1ubuntu1) ... 80s Preparing to unpack .../03-xxd_2%3a9.1.1882-1ubuntu2_amd64.deb ... 80s Unpacking xxd (2:9.1.1882-1ubuntu2) over (2:9.1.1882-1ubuntu1) ... 80s Preparing to unpack .../04-libplymouth5_24.004.60+git20250831.4a3c171d-0ubuntu5_amd64.deb ... 80s Unpacking libplymouth5:amd64 (24.004.60+git20250831.4a3c171d-0ubuntu5) over (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 80s Preparing to unpack .../05-plymouth-theme-ubuntu-text_24.004.60+git20250831.4a3c171d-0ubuntu5_amd64.deb ... 80s Unpacking plymouth-theme-ubuntu-text (24.004.60+git20250831.4a3c171d-0ubuntu5) over (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 80s Preparing to unpack .../06-plymouth_24.004.60+git20250831.4a3c171d-0ubuntu5_amd64.deb ... 80s Unpacking plymouth (24.004.60+git20250831.4a3c171d-0ubuntu5) over (24.004.60+git20250831.4a3c171d-0ubuntu4) ... 80s Preparing to unpack .../07-python3-gdbm_3.14.2-1_amd64.deb ... 80s Unpacking python3-gdbm (3.14.2-1) over (3.13.9-3) ... 80s Preparing to unpack .../08-libgprofng0_2.45.50.20260119-1ubuntu1_amd64.deb ... 80s Unpacking libgprofng0:amd64 (2.45.50.20260119-1ubuntu1) over (2.45.50.20251209-1ubuntu1) ... 80s Preparing to unpack .../09-libctf0_2.45.50.20260119-1ubuntu1_amd64.deb ... 80s Unpacking libctf0:amd64 (2.45.50.20260119-1ubuntu1) over (2.45.50.20251209-1ubuntu1) ... 80s Preparing to unpack .../10-libctf-nobfd0_2.45.50.20260119-1ubuntu1_amd64.deb ... 80s Unpacking libctf-nobfd0:amd64 (2.45.50.20260119-1ubuntu1) over (2.45.50.20251209-1ubuntu1) ... 80s Preparing to unpack .../11-binutils-x86-64-linux-gnu_2.45.50.20260119-1ubuntu1_amd64.deb ... 80s Unpacking binutils-x86-64-linux-gnu (2.45.50.20260119-1ubuntu1) over (2.45.50.20251209-1ubuntu1) ... 80s Preparing to unpack .../12-libbinutils_2.45.50.20260119-1ubuntu1_amd64.deb ... 80s Unpacking libbinutils:amd64 (2.45.50.20260119-1ubuntu1) over (2.45.50.20251209-1ubuntu1) ... 80s Preparing to unpack .../13-binutils_2.45.50.20260119-1ubuntu1_amd64.deb ... 80s Unpacking binutils (2.45.50.20260119-1ubuntu1) over (2.45.50.20251209-1ubuntu1) ... 80s Preparing to unpack .../14-binutils-common_2.45.50.20260119-1ubuntu1_amd64.deb ... 80s Unpacking binutils-common:amd64 (2.45.50.20260119-1ubuntu1) over (2.45.50.20251209-1ubuntu1) ... 80s Selecting previously unselected package libsframe3:amd64. 80s Preparing to unpack .../15-libsframe3_2.45.50.20260119-1ubuntu1_amd64.deb ... 80s Unpacking libsframe3:amd64 (2.45.50.20260119-1ubuntu1) ... 80s Preparing to unpack .../16-python3-jaraco.context_6.0.1-2_all.deb ... 80s Unpacking python3-jaraco.context (6.0.1-2) over (6.0.1-1build1) ... 80s Preparing to unpack .../17-zstd_1.5.7+dfsg-3_amd64.deb ... 80s Unpacking zstd (1.5.7+dfsg-3) over (1.5.7+dfsg-2) ... 80s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ... 80s Setting up binutils-common:amd64 (2.45.50.20260119-1ubuntu1) ... 80s Setting up libsframe3:amd64 (2.45.50.20260119-1ubuntu1) ... 80s Setting up libctf-nobfd0:amd64 (2.45.50.20260119-1ubuntu1) ... 80s Setting up libnss-systemd:amd64 (259-1ubuntu3) ... 80s Setting up systemd (259-1ubuntu3) ... 80s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 80s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 81s Setting up xxd (2:9.1.1882-1ubuntu2) ... 81s Setting up vim-common (2:9.1.1882-1ubuntu2) ... 81s Setting up systemd-cryptsetup (259-1ubuntu3) ... 81s Setting up libatomic1:amd64 (15.2.0-12ubuntu1) ... 81s Setting up udev (259-1ubuntu3) ... 82s Setting up libplymouth5:amd64 (24.004.60+git20250831.4a3c171d-0ubuntu5) ... 82s Setting up libtasn1-6:amd64 (4.21.0-2) ... 82s Setting up python3.14 (3.14.2-1) ... 82s Setting up libbinutils:amd64 (2.45.50.20260119-1ubuntu1) ... 82s Setting up libstdc++6:amd64 (15.2.0-12ubuntu1) ... 82s Setting up libpython3-stdlib:amd64 (3.14.2-1) ... 82s Setting up systemd-resolved (259-1ubuntu3) ... 83s Could not execute systemctl: at /usr/bin/deb-systemd-invoke line 148. 83s Setting up libctf0:amd64 (2.45.50.20260119-1ubuntu1) ... 83s Setting up systemd-userdbd (259-1ubuntu3) ... 83s Setting up systemd-sysv (259-1ubuntu3) ... 83s Setting up python3-gdbm (3.14.2-1) ... 83s Setting up plymouth (24.004.60+git20250831.4a3c171d-0ubuntu5) ... 83s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 83s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 83s Setting up python3 (3.14.2-1) ... 83s running python rtupdate hooks for python3.14... 83s running python post-rtupdate hooks for python3.14... 83s Setting up vim-tiny (2:9.1.1882-1ubuntu2) ... 84s Setting up libgprofng0:amd64 (2.45.50.20260119-1ubuntu1) ... 84s Setting up libpam-systemd:amd64 (259-1ubuntu3) ... 84s Setting up zstd (1.5.7+dfsg-3) ... 84s Setting up binutils-x86-64-linux-gnu (2.45.50.20260119-1ubuntu1) ... 84s Setting up python3-jaraco.context (6.0.1-2) ... 84s Setting up binutils (2.45.50.20260119-1ubuntu1) ... 84s Installing new version of config file /etc/gprofng.rc ... 84s Processing triggers for dbus (1.16.2-2ubuntu2) ... 84s Processing triggers for shared-mime-info (2.4-5build2) ... 85s Processing triggers for procps (2:4.0.4-9ubuntu1) ... 85s Processing triggers for initramfs-tools (0.150ubuntu7) ... 85s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 89s Processing triggers for libc-bin (2.42-2ubuntu4) ... 89s Processing triggers for man-db (2.13.1-1) ... 90s Setting up plymouth-theme-ubuntu-text (24.004.60+git20250831.4a3c171d-0ubuntu5) ... 90s Processing triggers for initramfs-tools (0.150ubuntu7) ... 90s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 94s autopkgtest [20:28:57]: upgrading testbed (apt dist-upgrade and autopurge) 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 95s Calculating upgrade... 95s The following packages were automatically installed and are no longer required: 95s python3.13 python3.13-minimal 95s Use 'sudo apt autoremove' to remove them. 95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 95s Solving dependencies... 95s The following packages will be REMOVED: 95s python3.13* python3.13-minimal* 95s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 95s After this operation, 7860 kB disk space will be freed. 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124950 files and directories currently installed.) 95s Removing python3.13 (3.13.11-1) ... 95s Removing python3.13-minimal (3.13.11-1) ... 96s Processing triggers for man-db (2.13.1-1) ... 96s Processing triggers for systemd (259-1ubuntu3) ... 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124923 files and directories currently installed.) 96s Purging configuration files for python3.13-minimal (3.13.11-1) ... 96s autopkgtest [20:28:59]: rebooting testbed after setup commands that affected boot 158s autopkgtest [20:30:01]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:49:02 UTC 2026 161s autopkgtest [20:30:04]: @@@@@@@@@@@@@@@@@@@@ apt-source snakemake 162s Get:1 http://ftpmaster.internal/ubuntu resolute/universe snakemake 7.32.4-8.1 (dsc) [3330 B] 162s Get:2 http://ftpmaster.internal/ubuntu resolute/universe snakemake 7.32.4-8.1 (tar) [8886 kB] 162s Get:3 http://ftpmaster.internal/ubuntu resolute/universe snakemake 7.32.4-8.1 (diff) [29.9 kB] 163s gpgv: Signature made Mon Dec 29 15:32:14 2025 UTC 163s gpgv: using RSA key 406220C8B8552802378CCE411F5C7A8B45564314 163s gpgv: issuer "bage@debian.org" 163s gpgv: Can't check signature: No public key 163s dpkg-source: warning: cannot verify inline signature for ./snakemake_7.32.4-8.1.dsc: no acceptable signature found 163s autopkgtest [20:30:06]: testing package snakemake version 7.32.4-8.1 163s autopkgtest [20:30:06]: build not needed 165s autopkgtest [20:30:08]: test command1: preparing testbed 165s Reading package lists... 165s Building dependency tree... 165s Reading state information... 165s Solving dependencies... 165s The following NEW packages will be installed: 165s coinor-cbc coinor-libcbc3.1 coinor-libcgl1 coinor-libclp1 165s coinor-libcoinutils3v5 coinor-libosi1v5 docutils-common 165s fonts-glyphicons-halflings git git-man libblas3 libdatrie1 liberror-perl 165s libgfortran5 libjs-bootstrap libjs-jquery liblapack3 python3-configargparse 165s python3-connection-pool python3-datrie python3-decorator python3-docutils 165s python3-dpath python3-fastjsonschema python3-git python3-gitdb 165s python3-humanfriendly python3-jupyter-core python3-nbformat python3-plac 165s python3-platformdirs python3-psutil python3-pulp python3-retry 165s python3-roman-numerals python3-smart-open python3-smmap python3-stopit 165s python3-tabulate python3-throttler python3-toposort python3-traitlets 165s python3-wrapt python3-yte sgml-base snakemake xml-core 165s 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. 165s Need to get 15.3 MB of archives. 165s After this operation, 61.7 MB of additional disk space will be used. 165s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 165s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libgfortran5 amd64 15.2.0-12ubuntu1 [939 kB] 165s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 165s Get:4 http://ftpmaster.internal/ubuntu resolute/universe amd64 coinor-libcoinutils3v5 amd64 2.11.12+ds-1 [491 kB] 166s Get:5 http://ftpmaster.internal/ubuntu resolute/universe amd64 coinor-libosi1v5 amd64 0.108.11+ds-1 [291 kB] 166s Get:6 http://ftpmaster.internal/ubuntu resolute/universe amd64 coinor-libclp1 amd64 1.17.10+ds-1build1 [933 kB] 166s Get:7 http://ftpmaster.internal/ubuntu resolute/universe amd64 coinor-libcgl1 amd64 0.60.9+ds-1build1 [439 kB] 166s Get:8 http://ftpmaster.internal/ubuntu resolute/universe amd64 coinor-libcbc3.1 amd64 2.10.12+ds-1build1 [788 kB] 166s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 sgml-base all 1.31+nmu1 [11.0 kB] 166s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 xml-core all 0.19build1 [20.3 kB] 166s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 docutils-common all 0.22.4+dfsg-1 [130 kB] 166s Get:12 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 166s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 liberror-perl all 0.17030-1 [23.5 kB] 166s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 git-man all 1:2.51.0-1ubuntu1 [1179 kB] 166s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 git amd64 1:2.51.0-1ubuntu1 [4414 kB] 166s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB] 166s Get:17 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 166s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 166s Get:19 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-configargparse all 1.7-2 [31.7 kB] 166s Get:20 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-connection-pool all 0.0.3-2build1 [5792 B] 166s Get:21 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-datrie amd64 0.8.3-2 [207 kB] 166s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-decorator all 5.2.1-2 [28.1 kB] 166s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-roman-numerals all 4.1.0-1 [8660 B] 166s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-docutils all 0.22.4+dfsg-1 [439 kB] 166s Get:25 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-dpath all 2.2.0-2 [20.3 kB] 166s Get:26 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fastjsonschema all 2.21.1-1 [20.4 kB] 166s Get:27 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-smmap all 6.0.0-1build1 [20.7 kB] 166s Get:28 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-gitdb all 4.0.12-1 [46.4 kB] 166s Get:29 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-git all 3.1.46-1 [149 kB] 166s Get:30 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-humanfriendly all 10.0-6build1 [70.9 kB] 166s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-platformdirs all 4.5.1-1 [17.1 kB] 166s Get:32 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-traitlets all 5.14.3+really5.14.3-2 [71.7 kB] 166s Get:33 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-jupyter-core all 5.9.1-1 [28.9 kB] 166s Get:34 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-nbformat all 5.10.4-1 [39.2 kB] 166s Get:35 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-plac all 1.4.3-2 [63.2 kB] 166s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-psutil amd64 7.1.0-1ubuntu1 [191 kB] 166s Get:37 http://ftpmaster.internal/ubuntu resolute/universe amd64 coinor-cbc amd64 2.10.12+ds-1build1 [14.5 kB] 166s Get:38 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pulp all 2.7.0+dfsg-4 [71.4 kB] 166s Get:39 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-retry all 0.9.2-5 [6160 B] 166s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-wrapt amd64 1.17.3-3 [40.5 kB] 166s Get:41 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-smart-open all 7.5.0-1 [56.9 kB] 166s Get:42 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-stopit all 1.1.2-3 [12.8 kB] 166s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-tabulate all 0.9.0-1build1 [45.4 kB] 166s Get:44 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-throttler all 1.2.2-4ubuntu1 [7758 B] 166s Get:45 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-toposort all 1.10-2 [6348 B] 166s Get:46 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-yte all 1.5.4-1 [12.0 kB] 166s Get:47 http://ftpmaster.internal/ubuntu resolute/universe amd64 snakemake all 7.32.4-8.1 [275 kB] 167s Fetched 15.3 MB in 1s (11.6 MB/s) 167s Selecting previously unselected package libblas3:amd64. 167s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124925 files and directories currently installed.) 167s Preparing to unpack .../00-libblas3_3.12.1-7ubuntu1_amd64.deb ... 167s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ... 167s Selecting previously unselected package libgfortran5:amd64. 167s Preparing to unpack .../01-libgfortran5_15.2.0-12ubuntu1_amd64.deb ... 167s Unpacking libgfortran5:amd64 (15.2.0-12ubuntu1) ... 167s Selecting previously unselected package liblapack3:amd64. 167s Preparing to unpack .../02-liblapack3_3.12.1-7ubuntu1_amd64.deb ... 167s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ... 167s Selecting previously unselected package coinor-libcoinutils3v5:amd64. 167s Preparing to unpack .../03-coinor-libcoinutils3v5_2.11.12+ds-1_amd64.deb ... 167s Unpacking coinor-libcoinutils3v5:amd64 (2.11.12+ds-1) ... 167s Selecting previously unselected package coinor-libosi1v5:amd64. 167s Preparing to unpack .../04-coinor-libosi1v5_0.108.11+ds-1_amd64.deb ... 167s Unpacking coinor-libosi1v5:amd64 (0.108.11+ds-1) ... 167s Selecting previously unselected package coinor-libclp1:amd64. 167s Preparing to unpack .../05-coinor-libclp1_1.17.10+ds-1build1_amd64.deb ... 167s Unpacking coinor-libclp1:amd64 (1.17.10+ds-1build1) ... 167s Selecting previously unselected package coinor-libcgl1:amd64. 167s Preparing to unpack .../06-coinor-libcgl1_0.60.9+ds-1build1_amd64.deb ... 167s Unpacking coinor-libcgl1:amd64 (0.60.9+ds-1build1) ... 167s Selecting previously unselected package coinor-libcbc3.1:amd64. 167s Preparing to unpack .../07-coinor-libcbc3.1_2.10.12+ds-1build1_amd64.deb ... 167s Unpacking coinor-libcbc3.1:amd64 (2.10.12+ds-1build1) ... 167s Selecting previously unselected package sgml-base. 167s Preparing to unpack .../08-sgml-base_1.31+nmu1_all.deb ... 167s Unpacking sgml-base (1.31+nmu1) ... 167s Selecting previously unselected package xml-core. 167s Preparing to unpack .../09-xml-core_0.19build1_all.deb ... 167s Unpacking xml-core (0.19build1) ... 167s Selecting previously unselected package docutils-common. 167s Preparing to unpack .../10-docutils-common_0.22.4+dfsg-1_all.deb ... 167s Unpacking docutils-common (0.22.4+dfsg-1) ... 167s Selecting previously unselected package fonts-glyphicons-halflings. 167s Preparing to unpack .../11-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 167s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 167s Selecting previously unselected package liberror-perl. 167s Preparing to unpack .../12-liberror-perl_0.17030-1_all.deb ... 167s Unpacking liberror-perl (0.17030-1) ... 167s Selecting previously unselected package git-man. 167s Preparing to unpack .../13-git-man_1%3a2.51.0-1ubuntu1_all.deb ... 167s Unpacking git-man (1:2.51.0-1ubuntu1) ... 167s Selecting previously unselected package git. 167s Preparing to unpack .../14-git_1%3a2.51.0-1ubuntu1_amd64.deb ... 167s Unpacking git (1:2.51.0-1ubuntu1) ... 167s Selecting previously unselected package libdatrie1:amd64. 167s Preparing to unpack .../15-libdatrie1_0.2.14-1_amd64.deb ... 167s Unpacking libdatrie1:amd64 (0.2.14-1) ... 167s Selecting previously unselected package libjs-bootstrap. 167s Preparing to unpack .../16-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 167s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 167s Selecting previously unselected package libjs-jquery. 167s Preparing to unpack .../17-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 167s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 167s Selecting previously unselected package python3-configargparse. 167s Preparing to unpack .../18-python3-configargparse_1.7-2_all.deb ... 167s Unpacking python3-configargparse (1.7-2) ... 167s Selecting previously unselected package python3-connection-pool. 167s Preparing to unpack .../19-python3-connection-pool_0.0.3-2build1_all.deb ... 167s Unpacking python3-connection-pool (0.0.3-2build1) ... 167s Selecting previously unselected package python3-datrie. 167s Preparing to unpack .../20-python3-datrie_0.8.3-2_amd64.deb ... 167s Unpacking python3-datrie (0.8.3-2) ... 167s Selecting previously unselected package python3-decorator. 167s Preparing to unpack .../21-python3-decorator_5.2.1-2_all.deb ... 167s Unpacking python3-decorator (5.2.1-2) ... 167s Selecting previously unselected package python3-roman-numerals. 167s Preparing to unpack .../22-python3-roman-numerals_4.1.0-1_all.deb ... 167s Unpacking python3-roman-numerals (4.1.0-1) ... 167s Selecting previously unselected package python3-docutils. 167s Preparing to unpack .../23-python3-docutils_0.22.4+dfsg-1_all.deb ... 167s Unpacking python3-docutils (0.22.4+dfsg-1) ... 167s Selecting previously unselected package python3-dpath. 167s Preparing to unpack .../24-python3-dpath_2.2.0-2_all.deb ... 167s Unpacking python3-dpath (2.2.0-2) ... 167s Selecting previously unselected package python3-fastjsonschema. 167s Preparing to unpack .../25-python3-fastjsonschema_2.21.1-1_all.deb ... 167s Unpacking python3-fastjsonschema (2.21.1-1) ... 167s Selecting previously unselected package python3-smmap. 167s Preparing to unpack .../26-python3-smmap_6.0.0-1build1_all.deb ... 167s Unpacking python3-smmap (6.0.0-1build1) ... 167s Selecting previously unselected package python3-gitdb. 167s Preparing to unpack .../27-python3-gitdb_4.0.12-1_all.deb ... 167s Unpacking python3-gitdb (4.0.12-1) ... 167s Selecting previously unselected package python3-git. 167s Preparing to unpack .../28-python3-git_3.1.46-1_all.deb ... 167s Unpacking python3-git (3.1.46-1) ... 167s Selecting previously unselected package python3-humanfriendly. 167s Preparing to unpack .../29-python3-humanfriendly_10.0-6build1_all.deb ... 167s Unpacking python3-humanfriendly (10.0-6build1) ... 167s Selecting previously unselected package python3-platformdirs. 167s Preparing to unpack .../30-python3-platformdirs_4.5.1-1_all.deb ... 167s Unpacking python3-platformdirs (4.5.1-1) ... 167s Selecting previously unselected package python3-traitlets. 167s Preparing to unpack .../31-python3-traitlets_5.14.3+really5.14.3-2_all.deb ... 167s Unpacking python3-traitlets (5.14.3+really5.14.3-2) ... 167s Selecting previously unselected package python3-jupyter-core. 167s Preparing to unpack .../32-python3-jupyter-core_5.9.1-1_all.deb ... 167s Unpacking python3-jupyter-core (5.9.1-1) ... 167s Selecting previously unselected package python3-nbformat. 167s Preparing to unpack .../33-python3-nbformat_5.10.4-1_all.deb ... 167s Unpacking python3-nbformat (5.10.4-1) ... 167s Selecting previously unselected package python3-plac. 167s Preparing to unpack .../34-python3-plac_1.4.3-2_all.deb ... 167s Unpacking python3-plac (1.4.3-2) ... 167s Selecting previously unselected package python3-psutil. 167s Preparing to unpack .../35-python3-psutil_7.1.0-1ubuntu1_amd64.deb ... 167s Unpacking python3-psutil (7.1.0-1ubuntu1) ... 167s Selecting previously unselected package coinor-cbc. 167s Preparing to unpack .../36-coinor-cbc_2.10.12+ds-1build1_amd64.deb ... 167s Unpacking coinor-cbc (2.10.12+ds-1build1) ... 167s Selecting previously unselected package python3-pulp. 167s Preparing to unpack .../37-python3-pulp_2.7.0+dfsg-4_all.deb ... 167s Unpacking python3-pulp (2.7.0+dfsg-4) ... 167s Selecting previously unselected package python3-retry. 167s Preparing to unpack .../38-python3-retry_0.9.2-5_all.deb ... 167s Unpacking python3-retry (0.9.2-5) ... 167s Selecting previously unselected package python3-wrapt. 167s Preparing to unpack .../39-python3-wrapt_1.17.3-3_amd64.deb ... 167s Unpacking python3-wrapt (1.17.3-3) ... 167s Selecting previously unselected package python3-smart-open. 167s Preparing to unpack .../40-python3-smart-open_7.5.0-1_all.deb ... 167s Unpacking python3-smart-open (7.5.0-1) ... 167s Selecting previously unselected package python3-stopit. 168s Preparing to unpack .../41-python3-stopit_1.1.2-3_all.deb ... 168s Unpacking python3-stopit (1.1.2-3) ... 168s Selecting previously unselected package python3-tabulate. 168s Preparing to unpack .../42-python3-tabulate_0.9.0-1build1_all.deb ... 168s Unpacking python3-tabulate (0.9.0-1build1) ... 168s Selecting previously unselected package python3-throttler. 168s Preparing to unpack .../43-python3-throttler_1.2.2-4ubuntu1_all.deb ... 168s Unpacking python3-throttler (1.2.2-4ubuntu1) ... 168s Selecting previously unselected package python3-toposort. 168s Preparing to unpack .../44-python3-toposort_1.10-2_all.deb ... 168s Unpacking python3-toposort (1.10-2) ... 168s Selecting previously unselected package python3-yte. 168s Preparing to unpack .../45-python3-yte_1.5.4-1_all.deb ... 168s Unpacking python3-yte (1.5.4-1) ... 168s Selecting previously unselected package snakemake. 168s Preparing to unpack .../46-snakemake_7.32.4-8.1_all.deb ... 168s Unpacking snakemake (7.32.4-8.1) ... 168s Setting up python3-toposort (1.10-2) ... 168s Setting up python3-configargparse (1.7-2) ... 168s Setting up libdatrie1:amd64 (0.2.14-1) ... 168s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 168s Setting up python3-tabulate (0.9.0-1build1) ... 168s Setting up python3-plac (1.4.3-2) ... 168s Setting up python3-platformdirs (4.5.1-1) ... 168s Setting up python3-psutil (7.1.0-1ubuntu1) ... 168s Setting up liberror-perl (0.17030-1) ... 168s Setting up python3-decorator (5.2.1-2) ... 168s Setting up libblas3:amd64 (3.12.1-7ubuntu1) ... 168s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 168s Setting up python3-humanfriendly (10.0-6build1) ... 168s /usr/lib/python3/dist-packages/humanfriendly/testing.py:546: SyntaxWarning: 'return' in a 'finally' block 168s return super(MockedProgram, self).__exit__(*args, **kw) 168s Setting up python3-dpath (2.2.0-2) ... 168s Setting up python3-connection-pool (0.0.3-2build1) ... 168s Setting up python3-wrapt (1.17.3-3) ... 169s Setting up python3-throttler (1.2.2-4ubuntu1) ... 169s Setting up python3-retry (0.9.2-5) ... 169s Setting up libgfortran5:amd64 (15.2.0-12ubuntu1) ... 169s Setting up python3-fastjsonschema (2.21.1-1) ... 169s Setting up python3-stopit (1.1.2-3) ... 169s Setting up python3-traitlets (5.14.3+really5.14.3-2) ... 169s Setting up python3-roman-numerals (4.1.0-1) ... 169s Setting up git-man (1:2.51.0-1ubuntu1) ... 169s Setting up sgml-base (1.31+nmu1) ... 169s Setting up python3-datrie (0.8.3-2) ... 169s Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 169s Setting up python3-smmap (6.0.0-1build1) ... 169s Setting up python3-jupyter-core (5.9.1-1) ... 169s Setting up libjs-bootstrap (3.4.1+dfsg-6) ... 169s Setting up liblapack3:amd64 (3.12.1-7ubuntu1) ... 169s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 169s Setting up python3-smart-open (7.5.0-1) ... 169s Setting up python3-nbformat (5.10.4-1) ... 169s Setting up python3-gitdb (4.0.12-1) ... 170s Setting up python3-yte (1.5.4-1) ... 170s Setting up coinor-libcoinutils3v5:amd64 (2.11.12+ds-1) ... 170s Setting up git (1:2.51.0-1ubuntu1) ... 170s Setting up coinor-libosi1v5:amd64 (0.108.11+ds-1) ... 170s Setting up xml-core (0.19build1) ... 170s Setting up coinor-libclp1:amd64 (1.17.10+ds-1build1) ... 170s Setting up python3-git (3.1.46-1) ... 170s Setting up coinor-libcgl1:amd64 (0.60.9+ds-1build1) ... 170s Setting up coinor-libcbc3.1:amd64 (2.10.12+ds-1build1) ... 170s Setting up coinor-cbc (2.10.12+ds-1build1) ... 170s Setting up python3-pulp (2.7.0+dfsg-4) ... 170s /usr/lib/python3/dist-packages/pulp/apis/xpress_api.py:325: SyntaxWarning: "\ " is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\ "? A raw string is also an option. 170s otherwise be interpreted by the Tcl shell: \ $ " [ 170s Processing triggers for libc-bin (2.42-2ubuntu4) ... 170s Processing triggers for man-db (2.13.1-1) ... 171s Processing triggers for sgml-base (1.31+nmu1) ... 171s Setting up docutils-common (0.22.4+dfsg-1) ... 171s Processing triggers for sgml-base (1.31+nmu1) ... 171s Setting up python3-docutils (0.22.4+dfsg-1) ... 171s Setting up snakemake (7.32.4-8.1) ... 172s autopkgtest [20:30:15]: test environment configured for cross building 172s autopkgtest [20:30:15]: test command1: cp tests/test_bash/Snakefile $AUTOPKGTEST_TMP && cd $AUTOPKGTEST_TMP && snakemake --cores 1 && grep -e bash test.out 172s autopkgtest [20:30:15]: test command1: [----------------------- 173s Building DAG of jobs... 173s Using shell: /usr/bin/bash 173s Provided cores: 1 (use --cores to define parallelism) 173s Rules claiming more threads will be scaled down. 173s Job stats: 173s job count 173s ----- ------- 173s a 1 173s total 1 173s 173s Select jobs to execute... 173s 173s [Fri Jan 23 20:30:15 2026] 173s rule a: 173s output: test.out 173s jobid: 0 173s reason: Missing output files: test.out 173s resources: tmpdir=/tmp 173s 173s [Fri Jan 23 20:30:15 2026] 173s Finished job 0. 173s 1 of 1 steps (100%) done 173s Complete log: .snakemake/log/2026-01-23T203015.448528.snakemake.log 173s bash 173s autopkgtest [20:30:16]: test command1: -----------------------] 174s autopkgtest [20:30:17]: test command1: - - - - - - - - - - results - - - - - - - - - - 174s command1 PASS 174s autopkgtest [20:30:17]: test run-unit-test: preparing testbed 174s Reading package lists... 174s Building dependency tree... 174s Reading state information... 174s Solving dependencies... 175s The following NEW packages will be installed: 175s environment-modules fontconfig fontconfig-config fonts-dejavu-core 175s fonts-dejavu-mono glpk-utils graphviz libamd3 libaom3 libcairo2 libcdt6 175s libcgraph8 libcolamd3 libde265-0 libdeflate0 libfontconfig1 libgd3 libglpk40 175s libgomp1 libgraphite2-3 libgvc7 libgvplugin-gd8 libgvplugin-pango8 libgvpr2 175s libharfbuzz0b libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libice6 175s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblerc4 libltdl7 175s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 175s libpaper2 libpathplan4 libpixman-1-0 libsharpyuv0 libsm6 175s libsuitesparseconfig7 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 175s libwebp7 libxcb-render0 libxcb-shm0 libxdot4 libxft2 libxpm4 libxrender1 175s libxss1 libxt6t64 python3-ftputil python3-iniconfig python3-numpy 175s python3-numpy-dev python3-pandas python3-pandas-lib python3-pluggy 175s python3-pytest python3-pytest-mock python3-pytz python3-requests-mock 175s r-base-core stress tcl8.6 unzip x11-common xdg-utils zip 175s 0 upgraded, 77 newly installed, 0 to remove and 0 not upgraded. 175s Need to get 59.6 MB of archives. 175s After this operation, 196 MB of additional disk space will be used. 175s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy-dev amd64 1:2.3.5+ds-3 [147 kB] 175s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy amd64 1:2.3.5+ds-3 [8129 kB] 175s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1036 kB] 175s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 tcl8.6 amd64 8.6.17+dfsg-1 [15.0 kB] 175s Get:5 http://ftpmaster.internal/ubuntu resolute/universe amd64 environment-modules amd64 5.6.1-1 [365 kB] 175s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 175s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 175s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.15.0-2.4ubuntu1 [38.1 kB] 175s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.15.0-2.4ubuntu1 [143 kB] 175s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.15.0-2.4ubuntu1 [178 kB] 175s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libgomp1 amd64 15.2.0-12ubuntu1 [151 kB] 175s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libsuitesparseconfig7 amd64 1:7.12.1+dfsg-1 [22.0 kB] 175s Get:13 http://ftpmaster.internal/ubuntu resolute/universe amd64 libamd3 amd64 1:7.12.1+dfsg-1 [35.8 kB] 175s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libcolamd3 amd64 1:7.12.1+dfsg-1 [27.4 kB] 175s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libltdl7 amd64 2.5.4-9 [43.7 kB] 175s Get:16 http://ftpmaster.internal/ubuntu resolute/universe amd64 libglpk40 amd64 5.0-2 [380 kB] 175s Get:17 http://ftpmaster.internal/ubuntu resolute/universe amd64 glpk-utils amd64 5.0-2 [227 kB] 175s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 libcdt6 amd64 14.1.1-2ubuntu3 [20.2 kB] 175s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 libcgraph8 amd64 14.1.1-2ubuntu3 [55.3 kB] 175s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 libpathplan4 amd64 14.1.1-2ubuntu3 [26.3 kB] 175s Get:21 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 libxdot4 amd64 14.1.1-2ubuntu3 [23.5 kB] 175s Get:22 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 libgvc7 amd64 14.1.1-2ubuntu3 [397 kB] 175s Get:23 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 libgvpr2 amd64 14.1.1-2ubuntu3 [128 kB] 175s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 175s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2build1 [17.4 kB] 175s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2build1 [6120 B] 175s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 175s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 175s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 175s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 libaom3 amd64 3.13.1-2 [1970 kB] 175s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-aomdec amd64 1.21.2-1 [14.2 kB] 175s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libde265-0 amd64 1.0.16-1build1 [172 kB] 175s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-libde265 amd64 1.21.2-1 [9978 B] 175s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif1 amd64 1.21.2-1 [544 kB] 175s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 175s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 175s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 175s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 175s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 175s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 175s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 175s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 175s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libxpm4 amd64 1:3.5.17-1build3 [37.3 kB] 175s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libgd3 amd64 2.3.3-13ubuntu1 [130 kB] 175s Get:45 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 libgvplugin-gd8 amd64 14.1.1-2ubuntu3 [25.5 kB] 175s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 175s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.0-4 [529 kB] 175s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB] 175s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB] 175s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.56.4-1 [240 kB] 175s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.56.4-1 [53.2 kB] 175s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.56.4-1 [29.0 kB] 175s Get:53 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 libgvplugin-pango8 amd64 14.1.1-2ubuntu3 [24.6 kB] 175s Get:54 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 graphviz amd64 14.1.1-2ubuntu3 [58.5 kB] 175s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 175s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB] 175s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB] 175s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB] 175s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1 [16.4 kB] 175s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 175s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 175s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 175s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB] 175s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ftputil all 5.1.0-1build1 [41.3 kB] 175s Get:65 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-iniconfig all 2.1.0-2 [6962 B] 175s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytz all 2025.2-5 [32.4 kB] 175s Get:67 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pandas-lib amd64 2.3.3+dfsg-3 [6929 kB] 176s Get:68 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pandas all 2.3.3+dfsg-3 [2948 kB] 176s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pluggy all 1.6.0-2 [21.1 kB] 176s Get:70 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest all 9.0.2-2 [277 kB] 176s Get:71 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest-mock all 3.15.1-1 [11.9 kB] 176s Get:72 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-requests-mock all 1.12.1-4 [17.9 kB] 176s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu2 [178 kB] 176s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB] 176s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 176s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB] 176s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 stress amd64 1.0.7-2 [18.2 kB] 176s Preconfiguring packages ... 176s Fetched 59.6 MB in 1s (40.8 MB/s) 176s Selecting previously unselected package python3-numpy-dev:amd64. 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 127489 files and directories currently installed.) 176s Preparing to unpack .../00-python3-numpy-dev_1%3a2.3.5+ds-3_amd64.deb ... 176s Unpacking python3-numpy-dev:amd64 (1:2.3.5+ds-3) ... 176s Selecting previously unselected package python3-numpy. 176s Preparing to unpack .../01-python3-numpy_1%3a2.3.5+ds-3_amd64.deb ... 176s Unpacking python3-numpy (1:2.3.5+ds-3) ... 176s Selecting previously unselected package libtcl8.6:amd64. 176s Preparing to unpack .../02-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... 176s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... 176s Selecting previously unselected package tcl8.6. 176s Preparing to unpack .../03-tcl8.6_8.6.17+dfsg-1_amd64.deb ... 176s Unpacking tcl8.6 (8.6.17+dfsg-1) ... 176s Selecting previously unselected package environment-modules. 176s Preparing to unpack .../04-environment-modules_5.6.1-1_amd64.deb ... 176s Unpacking environment-modules (5.6.1-1) ... 176s Selecting previously unselected package fonts-dejavu-mono. 176s Preparing to unpack .../05-fonts-dejavu-mono_2.37-8build1_all.deb ... 176s Unpacking fonts-dejavu-mono (2.37-8build1) ... 176s Selecting previously unselected package fonts-dejavu-core. 176s Preparing to unpack .../06-fonts-dejavu-core_2.37-8build1_all.deb ... 176s Unpacking fonts-dejavu-core (2.37-8build1) ... 177s Selecting previously unselected package fontconfig-config. 177s Preparing to unpack .../07-fontconfig-config_2.15.0-2.4ubuntu1_amd64.deb ... 177s Unpacking fontconfig-config (2.15.0-2.4ubuntu1) ... 177s Selecting previously unselected package libfontconfig1:amd64. 177s Preparing to unpack .../08-libfontconfig1_2.15.0-2.4ubuntu1_amd64.deb ... 177s Unpacking libfontconfig1:amd64 (2.15.0-2.4ubuntu1) ... 177s Selecting previously unselected package fontconfig. 177s Preparing to unpack .../09-fontconfig_2.15.0-2.4ubuntu1_amd64.deb ... 177s Unpacking fontconfig (2.15.0-2.4ubuntu1) ... 177s Selecting previously unselected package libgomp1:amd64. 177s Preparing to unpack .../10-libgomp1_15.2.0-12ubuntu1_amd64.deb ... 177s Unpacking libgomp1:amd64 (15.2.0-12ubuntu1) ... 177s Selecting previously unselected package libsuitesparseconfig7:amd64. 177s Preparing to unpack .../11-libsuitesparseconfig7_1%3a7.12.1+dfsg-1_amd64.deb ... 177s Unpacking libsuitesparseconfig7:amd64 (1:7.12.1+dfsg-1) ... 177s Selecting previously unselected package libamd3:amd64. 177s Preparing to unpack .../12-libamd3_1%3a7.12.1+dfsg-1_amd64.deb ... 177s Unpacking libamd3:amd64 (1:7.12.1+dfsg-1) ... 177s Selecting previously unselected package libcolamd3:amd64. 177s Preparing to unpack .../13-libcolamd3_1%3a7.12.1+dfsg-1_amd64.deb ... 177s Unpacking libcolamd3:amd64 (1:7.12.1+dfsg-1) ... 177s Selecting previously unselected package libltdl7:amd64. 177s Preparing to unpack .../14-libltdl7_2.5.4-9_amd64.deb ... 177s Unpacking libltdl7:amd64 (2.5.4-9) ... 177s Selecting previously unselected package libglpk40:amd64. 177s Preparing to unpack .../15-libglpk40_5.0-2_amd64.deb ... 177s Unpacking libglpk40:amd64 (5.0-2) ... 177s Selecting previously unselected package glpk-utils. 177s Preparing to unpack .../16-glpk-utils_5.0-2_amd64.deb ... 177s Unpacking glpk-utils (5.0-2) ... 177s Selecting previously unselected package libcdt6:amd64. 177s Preparing to unpack .../17-libcdt6_14.1.1-2ubuntu3_amd64.deb ... 177s Unpacking libcdt6:amd64 (14.1.1-2ubuntu3) ... 177s Selecting previously unselected package libcgraph8:amd64. 177s Preparing to unpack .../18-libcgraph8_14.1.1-2ubuntu3_amd64.deb ... 177s Unpacking libcgraph8:amd64 (14.1.1-2ubuntu3) ... 177s Selecting previously unselected package libpathplan4:amd64. 177s Preparing to unpack .../19-libpathplan4_14.1.1-2ubuntu3_amd64.deb ... 177s Unpacking libpathplan4:amd64 (14.1.1-2ubuntu3) ... 177s Selecting previously unselected package libxdot4:amd64. 177s Preparing to unpack .../20-libxdot4_14.1.1-2ubuntu3_amd64.deb ... 177s Unpacking libxdot4:amd64 (14.1.1-2ubuntu3) ... 177s Selecting previously unselected package libgvc7:amd64. 177s Preparing to unpack .../21-libgvc7_14.1.1-2ubuntu3_amd64.deb ... 177s Unpacking libgvc7:amd64 (14.1.1-2ubuntu3) ... 177s Selecting previously unselected package libgvpr2:amd64. 177s Preparing to unpack .../22-libgvpr2_14.1.1-2ubuntu3_amd64.deb ... 177s Unpacking libgvpr2:amd64 (14.1.1-2ubuntu3) ... 177s Selecting previously unselected package libpixman-1-0:amd64. 177s Preparing to unpack .../23-libpixman-1-0_0.46.4-1_amd64.deb ... 177s Unpacking libpixman-1-0:amd64 (0.46.4-1) ... 177s Selecting previously unselected package libxcb-render0:amd64. 177s Preparing to unpack .../24-libxcb-render0_1.17.0-2build1_amd64.deb ... 177s Unpacking libxcb-render0:amd64 (1.17.0-2build1) ... 177s Selecting previously unselected package libxcb-shm0:amd64. 177s Preparing to unpack .../25-libxcb-shm0_1.17.0-2build1_amd64.deb ... 177s Unpacking libxcb-shm0:amd64 (1.17.0-2build1) ... 177s Selecting previously unselected package libxrender1:amd64. 177s Preparing to unpack .../26-libxrender1_1%3a0.9.12-1_amd64.deb ... 177s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 177s Selecting previously unselected package libcairo2:amd64. 177s Preparing to unpack .../27-libcairo2_1.18.4-3_amd64.deb ... 177s Unpacking libcairo2:amd64 (1.18.4-3) ... 177s Selecting previously unselected package libsharpyuv0:amd64. 177s Preparing to unpack .../28-libsharpyuv0_1.5.0-0.1build1_amd64.deb ... 177s Unpacking libsharpyuv0:amd64 (1.5.0-0.1build1) ... 177s Selecting previously unselected package libaom3:amd64. 177s Preparing to unpack .../29-libaom3_3.13.1-2_amd64.deb ... 177s Unpacking libaom3:amd64 (3.13.1-2) ... 177s Selecting previously unselected package libheif-plugin-aomdec:amd64. 177s Preparing to unpack .../30-libheif-plugin-aomdec_1.21.2-1_amd64.deb ... 177s Unpacking libheif-plugin-aomdec:amd64 (1.21.2-1) ... 177s Selecting previously unselected package libde265-0:amd64. 177s Preparing to unpack .../31-libde265-0_1.0.16-1build1_amd64.deb ... 177s Unpacking libde265-0:amd64 (1.0.16-1build1) ... 177s Selecting previously unselected package libheif-plugin-libde265:amd64. 177s Preparing to unpack .../32-libheif-plugin-libde265_1.21.2-1_amd64.deb ... 177s Unpacking libheif-plugin-libde265:amd64 (1.21.2-1) ... 177s Selecting previously unselected package libheif1:amd64. 177s Preparing to unpack .../33-libheif1_1.21.2-1_amd64.deb ... 177s Unpacking libheif1:amd64 (1.21.2-1) ... 177s Selecting previously unselected package libimagequant0:amd64. 177s Preparing to unpack .../34-libimagequant0_2.18.0-1build1_amd64.deb ... 177s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 177s Selecting previously unselected package libjpeg-turbo8:amd64. 177s Preparing to unpack .../35-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 177s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 177s Selecting previously unselected package libjpeg8:amd64. 177s Preparing to unpack .../36-libjpeg8_8c-2ubuntu11_amd64.deb ... 177s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 177s Selecting previously unselected package libdeflate0:amd64. 177s Preparing to unpack .../37-libdeflate0_1.23-2_amd64.deb ... 177s Unpacking libdeflate0:amd64 (1.23-2) ... 177s Selecting previously unselected package libjbig0:amd64. 177s Preparing to unpack .../38-libjbig0_2.1-6.1ubuntu3_amd64.deb ... 177s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ... 177s Selecting previously unselected package liblerc4:amd64. 177s Preparing to unpack .../39-liblerc4_4.0.0+ds-5ubuntu2_amd64.deb ... 177s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 177s Selecting previously unselected package libwebp7:amd64. 177s Preparing to unpack .../40-libwebp7_1.5.0-0.1build1_amd64.deb ... 177s Unpacking libwebp7:amd64 (1.5.0-0.1build1) ... 177s Selecting previously unselected package libtiff6:amd64. 177s Preparing to unpack .../41-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 177s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 177s Selecting previously unselected package libxpm4:amd64. 177s Preparing to unpack .../42-libxpm4_1%3a3.5.17-1build3_amd64.deb ... 177s Unpacking libxpm4:amd64 (1:3.5.17-1build3) ... 177s Selecting previously unselected package libgd3:amd64. 177s Preparing to unpack .../43-libgd3_2.3.3-13ubuntu1_amd64.deb ... 177s Unpacking libgd3:amd64 (2.3.3-13ubuntu1) ... 177s Selecting previously unselected package libgvplugin-gd8:amd64. 177s Preparing to unpack .../44-libgvplugin-gd8_14.1.1-2ubuntu3_amd64.deb ... 177s Unpacking libgvplugin-gd8:amd64 (14.1.1-2ubuntu3) ... 177s Selecting previously unselected package libgraphite2-3:amd64. 177s Preparing to unpack .../45-libgraphite2-3_1.3.14-11ubuntu1_amd64.deb ... 177s Unpacking libgraphite2-3:amd64 (1.3.14-11ubuntu1) ... 177s Selecting previously unselected package libharfbuzz0b:amd64. 177s Preparing to unpack .../46-libharfbuzz0b_12.3.0-4_amd64.deb ... 177s Unpacking libharfbuzz0b:amd64 (12.3.0-4) ... 177s Selecting previously unselected package libthai-data. 177s Preparing to unpack .../47-libthai-data_0.1.30-1_all.deb ... 177s Unpacking libthai-data (0.1.30-1) ... 177s Selecting previously unselected package libthai0:amd64. 177s Preparing to unpack .../48-libthai0_0.1.30-1_amd64.deb ... 177s Unpacking libthai0:amd64 (0.1.30-1) ... 177s Selecting previously unselected package libpango-1.0-0:amd64. 177s Preparing to unpack .../49-libpango-1.0-0_1.56.4-1_amd64.deb ... 177s Unpacking libpango-1.0-0:amd64 (1.56.4-1) ... 177s Selecting previously unselected package libpangoft2-1.0-0:amd64. 177s Preparing to unpack .../50-libpangoft2-1.0-0_1.56.4-1_amd64.deb ... 177s Unpacking libpangoft2-1.0-0:amd64 (1.56.4-1) ... 177s Selecting previously unselected package libpangocairo-1.0-0:amd64. 177s Preparing to unpack .../51-libpangocairo-1.0-0_1.56.4-1_amd64.deb ... 177s Unpacking libpangocairo-1.0-0:amd64 (1.56.4-1) ... 177s Selecting previously unselected package libgvplugin-pango8:amd64. 177s Preparing to unpack .../52-libgvplugin-pango8_14.1.1-2ubuntu3_amd64.deb ... 177s Unpacking libgvplugin-pango8:amd64 (14.1.1-2ubuntu3) ... 177s Selecting previously unselected package graphviz. 177s Preparing to unpack .../53-graphviz_14.1.1-2ubuntu3_amd64.deb ... 177s Unpacking graphviz (14.1.1-2ubuntu3) ... 177s Selecting previously unselected package x11-common. 177s Preparing to unpack .../54-x11-common_1%3a7.7+24ubuntu1_all.deb ... 177s Unpacking x11-common (1:7.7+24ubuntu1) ... 177s Selecting previously unselected package libice6:amd64. 177s Preparing to unpack .../55-libice6_2%3a1.1.1-1build1_amd64.deb ... 177s Unpacking libice6:amd64 (2:1.1.1-1build1) ... 177s Selecting previously unselected package libpaper2:amd64. 177s Preparing to unpack .../56-libpaper2_2.2.5-0.3build1_amd64.deb ... 177s Unpacking libpaper2:amd64 (2.2.5-0.3build1) ... 177s Selecting previously unselected package libpaper-utils. 177s Preparing to unpack .../57-libpaper-utils_2.2.5-0.3build1_amd64.deb ... 177s Unpacking libpaper-utils (2.2.5-0.3build1) ... 177s Selecting previously unselected package libsm6:amd64. 177s Preparing to unpack .../58-libsm6_2%3a1.2.6-1_amd64.deb ... 177s Unpacking libsm6:amd64 (2:1.2.6-1) ... 177s Selecting previously unselected package libxft2:amd64. 177s Preparing to unpack .../59-libxft2_2.3.6-1build2_amd64.deb ... 177s Unpacking libxft2:amd64 (2.3.6-1build2) ... 177s Selecting previously unselected package libxss1:amd64. 177s Preparing to unpack .../60-libxss1_1%3a1.2.3-1build4_amd64.deb ... 177s Unpacking libxss1:amd64 (1:1.2.3-1build4) ... 177s Selecting previously unselected package libtk8.6:amd64. 177s Preparing to unpack .../61-libtk8.6_8.6.17-1_amd64.deb ... 177s Unpacking libtk8.6:amd64 (8.6.17-1) ... 177s Selecting previously unselected package libxt6t64:amd64. 177s Preparing to unpack .../62-libxt6t64_1%3a1.2.1-1.3_amd64.deb ... 177s Unpacking libxt6t64:amd64 (1:1.2.1-1.3) ... 177s Selecting previously unselected package python3-ftputil. 177s Preparing to unpack .../63-python3-ftputil_5.1.0-1build1_all.deb ... 177s Unpacking python3-ftputil (5.1.0-1build1) ... 177s Selecting previously unselected package python3-iniconfig. 177s Preparing to unpack .../64-python3-iniconfig_2.1.0-2_all.deb ... 177s Unpacking python3-iniconfig (2.1.0-2) ... 177s Selecting previously unselected package python3-pytz. 177s Preparing to unpack .../65-python3-pytz_2025.2-5_all.deb ... 177s Unpacking python3-pytz (2025.2-5) ... 177s Selecting previously unselected package python3-pandas-lib:amd64. 177s Preparing to unpack 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python3-requests-mock (1.12.1-4) ... 178s Selecting previously unselected package zip. 178s Preparing to unpack .../72-zip_3.0-15ubuntu2_amd64.deb ... 178s Unpacking zip (3.0-15ubuntu2) ... 178s Selecting previously unselected package unzip. 178s Preparing to unpack .../73-unzip_6.0-29ubuntu1_amd64.deb ... 178s Unpacking unzip (6.0-29ubuntu1) ... 178s Selecting previously unselected package xdg-utils. 178s Preparing to unpack .../74-xdg-utils_1.2.1-2ubuntu2_all.deb ... 178s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 178s Selecting previously unselected package r-base-core. 178s Preparing to unpack .../75-r-base-core_4.5.2-1ubuntu2_amd64.deb ... 178s Unpacking r-base-core (4.5.2-1ubuntu2) ... 178s Selecting previously unselected package stress. 178s Preparing to unpack .../76-stress_1.0.7-2_amd64.deb ... 178s Unpacking stress (1.0.7-2) ... 178s Setting up libxdot4:amd64 (14.1.1-2ubuntu3) ... 178s Setting up libgraphite2-3:amd64 (1.3.14-11ubuntu1) ... 178s Setting up python3-iniconfig (2.1.0-2) ... 178s Setting up libcdt6:amd64 (14.1.1-2ubuntu3) ... 178s Setting up libpixman-1-0:amd64 (0.46.4-1) ... 178s Setting up libsharpyuv0:amd64 (1.5.0-0.1build1) ... 178s Setting up libaom3:amd64 (3.13.1-2) ... 178s Setting up python3-ftputil (5.1.0-1build1) ... 178s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 178s Setting up libxpm4:amd64 (1:3.5.17-1build3) ... 178s Setting up libxrender1:amd64 (1:0.9.12-1) ... 178s Setting up libxcb-render0:amd64 (1.17.0-2build1) ... 178s Setting up stress (1.0.7-2) ... 178s Setting up unzip (6.0-29ubuntu1) ... 178s Setting up x11-common (1:7.7+24ubuntu1) ... 178s Setting up libdeflate0:amd64 (1.23-2) ... 178s Setting up python3-pytz (2025.2-5) ... 179s Setting up libxcb-shm0:amd64 (1.17.0-2build1) ... 179s Setting up libgomp1:amd64 (15.2.0-12ubuntu1) ... 179s Setting up libjbig0:amd64 (2.1-6.1ubuntu3) ... 179s Setting up zip (3.0-15ubuntu2) ... 179s Setting up libpathplan4:amd64 (14.1.1-2ubuntu3) ... 179s Setting up python3-requests-mock (1.12.1-4) ... 179s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 179s Setting up fonts-dejavu-mono (2.37-8build1) ... 179s Setting up python3-numpy-dev:amd64 (1:2.3.5+ds-3) ... 179s Setting up libtcl8.6:amd64 (8.6.17+dfsg-1) ... 179s Setting up fonts-dejavu-core (2.37-8build1) ... 179s Setting up libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 179s Setting up python3-numpy (1:2.3.5+ds-3) ... 180s Setting up libltdl7:amd64 (2.5.4-9) ... 180s Setting up python3-pluggy (1.6.0-2) ... 180s Setting up libcgraph8:amd64 (14.1.1-2ubuntu3) ... 180s Setting up libwebp7:amd64 (1.5.0-0.1build1) ... 180s Setting up libgvpr2:amd64 (14.1.1-2ubuntu3) ... 180s Setting up libsuitesparseconfig7:amd64 (1:7.12.1+dfsg-1) ... 180s Setting up libharfbuzz0b:amd64 (12.3.0-4) ... 180s Setting up libthai-data (0.1.30-1) ... 180s Setting up libxss1:amd64 (1:1.2.3-1build4) ... 180s Setting up libpaper2:amd64 (2.2.5-0.3build1) ... 180s Setting up libde265-0:amd64 (1.0.16-1build1) ... 180s Setting up xdg-utils (1.2.1-2ubuntu2) ... 180s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 180s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 180s Setting up libice6:amd64 (2:1.1.1-1build1) ... 180s Setting up tcl8.6 (8.6.17+dfsg-1) ... 180s Setting up libamd3:amd64 (1:7.12.1+dfsg-1) ... 180s Setting up libcolamd3:amd64 (1:7.12.1+dfsg-1) ... 180s Setting up fontconfig-config (2.15.0-2.4ubuntu1) ... 180s Setting up python3-pytest (9.0.2-2) ... 180s Setting up python3-pandas-lib:amd64 (2.3.3+dfsg-3) ... 180s Setting up libpaper-utils (2.2.5-0.3build1) ... 180s Setting up libthai0:amd64 (0.1.30-1) ... 180s Setting up python3-pandas (2.3.3+dfsg-3) ... 183s Setting up libglpk40:amd64 (5.0-2) ... 183s Setting up glpk-utils (5.0-2) ... 183s Setting up libgvc7:amd64 (14.1.1-2ubuntu3) ... 183s Setting up python3-pytest-mock (3.15.1-1) ... 183s Setting up libtiff6:amd64 (4.7.0-3ubuntu3) ... 183s Setting up environment-modules (5.6.1-1) ... 183s Setting up libsm6:amd64 (2:1.2.6-1) ... 183s Setting up libxt6t64:amd64 (1:1.2.1-1.3) ... 183s Setting up libheif-plugin-libde265:amd64 (1.21.2-1) ... 183s Setting up libheif1:amd64 (1.21.2-1) ... 183s Setting up libheif-plugin-aomdec:amd64 (1.21.2-1) ... 183s Processing triggers for libc-bin (2.42-2ubuntu4) ... 183s Processing triggers for man-db (2.13.1-1) ... 184s Processing triggers for sgml-base (1.31+nmu1) ... 184s Setting up libfontconfig1:amd64 (2.15.0-2.4ubuntu1) ... 184s Processing triggers for install-info (7.2-5) ... 184s Setting up fontconfig (2.15.0-2.4ubuntu1) ... 186s Regenerating fonts cache... done. 186s Setting up libxft2:amd64 (2.3.6-1build2) ... 186s Setting up libtk8.6:amd64 (8.6.17-1) ... 186s Setting up libpango-1.0-0:amd64 (1.56.4-1) ... 186s Setting up libcairo2:amd64 (1.18.4-3) ... 186s Setting up libgd3:amd64 (2.3.3-13ubuntu1) ... 186s Setting up libpangoft2-1.0-0:amd64 (1.56.4-1) ... 186s Setting up libpangocairo-1.0-0:amd64 (1.56.4-1) ... 186s Setting up libgvplugin-pango8:amd64 (14.1.1-2ubuntu3) ... 186s Setting up libgvplugin-gd8:amd64 (14.1.1-2ubuntu3) ... 186s Setting up r-base-core (4.5.2-1ubuntu2) ... 186s Creating config file /etc/R/Renviron with new version 186s Setting up graphviz (14.1.1-2ubuntu3) ... 186s Processing triggers for libc-bin (2.42-2ubuntu4) ... 187s autopkgtest [20:30:30]: test environment configured for cross building 187s autopkgtest [20:30:30]: test run-unit-test: [----------------------- 187s ============================= test session starts ============================== 187s platform linux -- Python 3.14.2, pytest-9.0.2, pluggy-1.6.0 -- /usr/bin/python3 187s cachedir: .pytest_cache 187s rootdir: /tmp/autopkgtest.gac9VV/autopkgtest_tmp 187s plugins: typeguard-4.4.4, requests_mock-1.12.1, mock-3.15.1 189s collecting ... collected 395 items / 97 deselected / 298 selected 189s 189s tests/test_expand.py::test_simple_expand PASSED [ 0%] 189s tests/test_expand.py::test_allow_missing PASSED [ 0%] 189s tests/test_google_lifesciences.py::test_google_lifesciences SKIPPED [ 1%] 189s tests/test_google_lifesciences.py::test_touch_remote_prefix SKIPPED [ 1%] 189s tests/test_google_lifesciences.py::test_cloud_checkpoints_issue574 SKIPPED [ 1%] 189s tests/test_io.py::test_wildcard_regex PASSED [ 2%] 189s tests/test_io.py::test_expand PASSED [ 2%] 189s tests/test_kubernetes.py::test_kubernetes_plain SKIPPED (Skipping GC...) [ 2%] 189s tests/test_kubernetes.py::test_kubernetes_conda SKIPPED (Skipping GC...) [ 3%] 189s tests/test_kubernetes.py::test_kubernetes_singularity SKIPPED (Skipp...) [ 3%] 189s tests/test_kubernetes.py::test_kubernetes_conda_singularity SKIPPED [ 3%] 189s tests/test_kubernetes.py::test_issue1041 SKIPPED (Skipping GCLOUD te...) [ 4%] 189s tests/test_linting.py::test_lint[params_prefix-positive] SKIPPED (Th...) [ 4%] 189s tests/test_linting.py::test_lint[params_prefix-negative] SKIPPED (Th...) [ 4%] 189s tests/test_linting.py::test_lint[absolute_paths-positive] SKIPPED (T...) [ 5%] 189s tests/test_linting.py::test_lint[absolute_paths-negative] SKIPPED (T...) [ 5%] 189s tests/test_linting.py::test_lint[long_run-positive] SKIPPED (This te...) [ 5%] 189s tests/test_linting.py::test_lint[long_run-negative] SKIPPED (This te...) 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[ 12%] 189s tests/test_linting.py::test_lint[mixed_func_and_rules-positive] SKIPPED [ 13%] 189s tests/test_linting.py::test_lint[mixed_func_and_rules-negative] SKIPPED [ 13%] 189s tests/test_persistence.py::TestCleanupContainers::test_one_unrequired_container_gets_removed PASSED [ 13%] 189s tests/test_schema.py::test_config PASSED [ 14%] 189s tests/test_schema.py::test_config_ref FAILED [ 14%] 189s tests/test_schema.py::test_dataframe PASSED [ 14%] 189s tests/test_slurm.py::test_slurm_mpi SKIPPED (Slurm is not setup when...) [ 15%] 189s tests/test_slurm.py::test_slurm_group_job SKIPPED (Slurm is not setu...) [ 15%] 189s tests/test_slurm.py::test_slurm_group_parallel SKIPPED (Slurm is not...) [ 15%] 189s tests/test_slurm.py::test_slurm_complex SKIPPED (Slurm is not setup ...) [ 16%] 189s tests/test_slurm.py::test_slurm_extra_arguments SKIPPED (Slurm and C...) 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tests/tests.py::test_new_resources_can_be_defined_as_local PASSED [ 55%] 826s tests/tests.py::test_resources_can_be_overwritten_as_global PASSED [ 55%] 846s tests/tests.py::test_scopes_submitted_to_cluster PASSED [ 56%] 866s tests/tests.py::test_resources_submitted_to_cluster PASSED [ 56%] 886s tests/tests.py::test_excluded_resources_not_submitted_to_cluster PASSED [ 56%] 906s tests/tests.py::test_group_job_fail PASSED [ 57%] 906s tests/tests.py::test_validate PASSED [ 57%] 906s tests/tests.py::test_validate_fail PASSED [ 57%] 906s tests/tests.py::test_issue854 PASSED [ 58%] 936s tests/tests.py::test_issue850 PASSED [ 58%] 966s tests/tests.py::test_issue860 PASSED [ 58%] 966s tests/tests.py::test_issue894 PASSED [ 59%] 966s tests/tests.py::test_issue584 PASSED [ 59%] 966s tests/tests.py::test_issue912 PASSED [ 59%] 996s tests/tests.py::test_job_properties PASSED [ 60%] 997s tests/tests.py::test_issue916 PASSED [ 60%] 1037s tests/tests.py::test_issue930 PASSED [ 60%] 1037s tests/tests.py::test_issue1037 PASSED [ 61%] 1037s tests/tests.py::test_issue1046 PASSED [ 61%] 1037s tests/tests.py::test_checkpoints PASSED [ 61%] 1037s tests/tests.py::test_checkpoints_dir PASSED [ 62%] 1038s tests/tests.py::test_issue1092 PASSED [ 62%] 1038s tests/tests.py::test_issue958 PASSED [ 62%] 1038s tests/tests.py::test_issue471 PASSED [ 63%] 1038s tests/tests.py::test_issue1085 PASSED [ 63%] 1038s tests/tests.py::test_expand_flag PASSED [ 63%] 1038s tests/tests.py::test_tmpdir PASSED [ 64%] 1038s tests/tests.py::test_tmpdir_default PASSED [ 64%] 1038s tests/tests.py::test_issue1284 PASSED [ 64%] 1038s tests/tests.py::test_issue1281 PASSED [ 65%] 1038s tests/tests.py::test_filegraph PASSED [ 65%] 1038s tests/tests.py::test_batch PASSED [ 65%] 1038s tests/tests.py::test_batch_final PASSED [ 66%] 1038s tests/tests.py::test_batch_fail PASSED [ 66%] 1038s tests/tests.py::test_github_issue52 PASSED [ 66%] 1039s tests/tests.py::test_envvars PASSED [ 67%] 1039s 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tests/tests.py::TestParseCoresJobs::test_non_local_job[input2-output2] PASSED [ 72%] 1040s tests/tests.py::TestParseCoresJobs::test_non_local_job[input3-None] PASSED [ 72%] 1040s tests/tests.py::TestParseCoresJobs::test_non_local_job[input4-None] PASSED [ 72%] 1040s tests/tests.py::TestParseCoresJobs::test_non_local_job[input5-output5] PASSED [ 73%] 1040s tests/tests.py::TestParseCoresJobs::test_local_job[input0-output0] PASSED [ 73%] 1040s tests/tests.py::TestParseCoresJobs::test_local_job[input1-output1] PASSED [ 73%] 1040s tests/tests.py::TestParseCoresJobs::test_local_job[input2-output2] PASSED [ 74%] 1040s tests/tests.py::TestParseCoresJobs::test_local_job[input3-None] PASSED [ 74%] 1040s tests/tests.py::TestParseCoresJobs::test_local_job[input4-output4] PASSED [ 74%] 1040s tests/tests.py::TestParseCoresJobs::test_local_job[input5-output5] PASSED [ 75%] 1040s tests/tests.py::TestParseCoresJobs::test_local_job[input6-None] PASSED [ 75%] 1040s tests/tests.py::TestParseCoresJobs::test_local_job[input7-output7] PASSED [ 75%] 1040s tests/tests.py::test_linting PASSED [ 76%] 1070s tests/tests.py::test_string_resources PASSED [ 76%] 1070s tests/tests.py::test_github_issue456 PASSED [ 76%] 1070s tests/tests.py::test_scatter_gather PASSED [ 77%] 1070s tests/tests.py::test_parsing_terminal_comment_following_statement PASSED [ 77%] 1071s tests/tests.py::test_github_issue640 PASSED [ 77%] 1072s tests/tests.py::test_generate_unit_tests PASSED [ 78%] 1072s tests/tests.py::test_metadata_migration PASSED [ 78%] 1074s tests/tests.py::test_paramspace PASSED [ 78%] 1076s tests/tests.py::test_paramspace_single_wildcard PASSED [ 79%] 1094s tests/tests.py::test_github_issue806 PASSED [ 79%] 1095s tests/tests.py::test_long_shell PASSED [ 79%] 1095s tests/tests.py::test_modules_all PASSED [ 80%] 1095s tests/tests.py::test_module_nested PASSED [ 80%] 1095s tests/tests.py::test_modules_all_exclude_1 PASSED [ 80%] 1095s tests/tests.py::test_modules_all_exclude_2 PASSED [ 81%] 1095s tests/tests.py::test_modules_specific PASSED [ 81%] 1095s tests/tests.py::test_use_rule_same_module PASSED [ 81%] 1095s tests/tests.py::test_module_no_prefixing_modified_paths PASSED [ 82%] 1095s tests/tests.py::test_module_worfklow_namespacing PASSED [ 82%] 1095s tests/tests.py::test_handover PASSED [ 82%] 1095s tests/tests.py::test_source_path PASSED [ 83%] 1095s tests/tests.py::test_filesep_windows_targets SKIPPED (Windows stuff) [ 83%] 1095s tests/tests.py::test_filesep_on_windows SKIPPED (Windows stuff) [ 83%] 1095s tests/tests.py::test_set_resources PASSED [ 84%] 1095s tests/tests.py::test_github_issue1069 PASSED [ 84%] 1096s tests/tests.py::test_touch_pipeline_with_temp_dir PASSED [ 84%] 1096s tests/tests.py::test_all_temp PASSED [ 85%] 1096s tests/tests.py::test_strict_mode PASSED [ 85%] 1116s tests/tests.py::test_github_issue1158 PASSED [ 85%] 1117s tests/tests.py::test_converting_path_for_r_script PASSED [ 86%] 1137s tests/tests.py::test_checkpoint_allowed_rules PASSED [ 86%] 1137s tests/tests.py::test_modules_ruledeps_inheritance PASSED [ 86%] 1218s tests/tests.py::test_issue1331 PASSED [ 87%] 1218s tests/tests.py::test_default_target PASSED [ 87%] 1218s tests/tests.py::test_cache_multioutput PASSED [ 87%] 1220s tests/tests.py::test_github_issue1384 PASSED [ 88%] 1220s tests/tests.py::test_template_engine PASSED [ 88%] 1220s tests/tests.py::test_groupid_expand_local PASSED [ 88%] 1240s tests/tests.py::test_groupid_expand_cluster PASSED [ 89%] 1242s tests/tests.py::test_service_jobs PASSED [ 89%] 1242s tests/tests.py::test_incomplete_params PASSED [ 89%] 1243s tests/tests.py::test_github_issue261 PASSED [ 90%] 1243s tests/tests.py::test_pipe_depend PASSED [ 90%] 1243s tests/tests.py::test_pipe_depend_target_file PASSED [ 90%] 1243s tests/tests.py::test_github_issue1500 PASSED [ 91%] 1243s tests/tests.py::test_github_issue1542 PASSED [ 91%] 1243s tests/tests.py::test_github_issue1550 PASSED [ 91%] 1243s tests/tests.py::test_github_issue1498 PASSED [ 92%] 1243s tests/tests.py::test_lazy_resources PASSED [ 92%] 1243s tests/tests.py::test_cleanup_metadata_fail PASSED [ 92%] 1243s tests/tests.py::test_github_issue1389 PASSED [ 93%] 1243s tests/tests.py::test_github_issue2142 PASSED [ 93%] 1243s tests/tests.py::test_ensure_nonempty_fail PASSED [ 93%] 1243s tests/tests.py::test_ensure_success PASSED [ 94%] 1243s tests/tests.py::test_ensure_checksum_fail PASSED [ 94%] 1244s tests/tests.py::test_fstring PASSED [ 94%] 1255s tests/tests.py::test_github_issue1261 PASSED [ 95%] 1256s tests/tests.py::test_retries PASSED [ 95%] 1256s tests/tests.py::test_retries_not_overriden PASSED [ 95%] 1256s tests/tests.py::test_module_input_func PASSED [ 96%] 1256s tests/tests.py::test_github_issue1618 PASSED [ 96%] 1256s tests/tests.py::test_github_issue1818 PASSED [ 96%] 1257s tests/tests.py::test_match_by_wildcard_names PASSED [ 97%] 1257s tests/tests.py::test_github_issue929 PASSED [ 97%] 1258s tests/tests.py::test_github_issue1882 PASSED [ 97%] 1258s tests/tests.py::test_inferred_resources PASSED [ 98%] 1258s tests/tests.py::test_workflow_profile PASSED [ 98%] 1259s tests/tests.py::test_no_workflow_profile PASSED [ 98%] 1259s tests/tests.py::test_localrule PASSED [ 99%] 1259s tests/tests.py::test_module_wildcard_constraints PASSED [ 99%] 1260s tests/tests.py::test_config_yte PASSED [100%] 1260s 1260s =================================== FAILURES =================================== 1260s _______________________________ test_config_ref ________________________________ 1260s 1260s self = 1260s url = 'file:/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1260s 1260s def resolve_from_url(self, url): 1260s """ 1260s Resolve the given URL. 1260s """ 1260s url, fragment = urldefrag(url) 1260s if not url: 1260s url = self.base_uri 1260s 1260s try: 1260s > document = self.store[url] 1260s ^^^^^^^^^^^^^^^ 1260s 1260s /usr/lib/python3/dist-packages/jsonschema/validators.py:1096: 1260s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1260s 1260s self = {'https://json-schema.org/draft/2019-09/schema': {'$schema': 'https://json-schema.org/draft/2019-09/schema', '$id': 'h...t': 'json', '$ref': '/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.json#/definitions/jsonbar'}}}}}} 1260s uri = 'file:/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1260s 1260s def __getitem__(self, uri): 1260s > return self.store[self.normalize(uri)] 1260s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1260s E KeyError: 'file:///tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1260s 1260s /usr/lib/python3/dist-packages/jsonschema/_utils.py:20: KeyError 1260s 1260s During handling of the above exception, another exception occurred: 1260s 1260s self = 1260s url = 'file:/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1260s 1260s def resolve_from_url(self, url): 1260s """ 1260s Resolve the given URL. 1260s """ 1260s url, fragment = urldefrag(url) 1260s if not url: 1260s url = self.base_uri 1260s 1260s try: 1260s document = self.store[url] 1260s except KeyError: 1260s try: 1260s > document = self.resolve_remote(url) 1260s ^^^^^^^^^^^^^^^^^^^^^^^^ 1260s 1260s /usr/lib/python3/dist-packages/jsonschema/validators.py:1099: 1260s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1260s /usr/lib/python3/dist-packages/jsonschema/validators.py:1196: in resolve_remote 1260s result = self.handlers[scheme](uri) 1260s ^^^^^^^^^^^^^^^^^^^^^^^^^^ 1260s /usr/lib/python3/dist-packages/snakemake/utils.py:74: in 1260s "file": lambda uri: _load_configfile(re.sub("^file://", "", uri)) 1260s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1260s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1260s 1260s configpath_or_obj = 'file:/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1260s filetype = 'Config' 1260s 1260s def _load_configfile(configpath_or_obj, filetype="Config"): 1260s "Tries to load a configfile first as JSON, then as YAML, into a dict." 1260s import yaml 1260s 1260s if isinstance(configpath_or_obj, str) or isinstance(configpath_or_obj, Path): 1260s > obj = open(configpath_or_obj, encoding="utf-8") 1260s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1260s E FileNotFoundError: [Errno 2] No such file or directory: 'file:/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1260s 1260s /usr/lib/python3/dist-packages/snakemake/io.py:1694: FileNotFoundError 1260s 1260s During handling of the above exception, another exception occurred: 1260s 1260s config_schema_ref = local('/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/config.ref.schema.yaml') 1260s 1260s def test_config_ref(config_schema_ref): 1260s config = {} 1260s > validate(config, str(config_schema_ref)) 1260s 1260s tests/test_schema.py:127: 1260s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1260s /usr/lib/python3/dist-packages/snakemake/utils.py:141: in validate 1260s DefaultValidator(schema, resolver=resolver).validate(data) 1260s /usr/lib/python3/dist-packages/jsonschema/validators.py:434: in validate 1260s for error in self.iter_errors(*args, **kwargs): 1260s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1260s /usr/lib/python3/dist-packages/jsonschema/validators.py:368: in iter_errors 1260s for error in errors: 1260s ^^^^^^ 1260s /usr/lib/python3/dist-packages/snakemake/utils.py:89: in set_defaults 1260s for error in validate_properties(validator, properties, instance, schema): 1260s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1260s /usr/lib/python3/dist-packages/jsonschema/_keywords.py:295: in properties 1260s yield from validator.descend( 1260s /usr/lib/python3/dist-packages/jsonschema/validators.py:416: in descend 1260s for error in errors: 1260s ^^^^^^ 1260s /usr/lib/python3/dist-packages/snakemake/utils.py:89: in set_defaults 1260s for error in validate_properties(validator, properties, instance, schema): 1260s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1260s /usr/lib/python3/dist-packages/jsonschema/_keywords.py:295: in properties 1260s yield from validator.descend( 1260s /usr/lib/python3/dist-packages/jsonschema/validators.py:416: in descend 1260s for error in errors: 1260s ^^^^^^ 1260s /usr/lib/python3/dist-packages/jsonschema/_keywords.py:274: in ref 1260s yield from validator._validate_reference(ref=ref, instance=instance) 1260s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1260s /usr/lib/python3/dist-packages/jsonschema/validators.py:461: in _validate_reference 1260s scope, resolved = resolve(ref) 1260s ^^^^^^^^^^^^ 1260s /usr/lib/python3/dist-packages/jsonschema/validators.py:1085: in resolve 1260s return url, self._remote_cache(url) 1260s ^^^^^^^^^^^^^^^^^^^^^^^ 1260s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 1260s 1260s self = 1260s url = 'file:/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1260s 1260s def resolve_from_url(self, url): 1260s """ 1260s Resolve the given URL. 1260s """ 1260s url, fragment = urldefrag(url) 1260s if not url: 1260s url = self.base_uri 1260s 1260s try: 1260s document = self.store[url] 1260s except KeyError: 1260s try: 1260s document = self.resolve_remote(url) 1260s except Exception as exc: 1260s > raise exceptions._RefResolutionError(exc) 1260s E jsonschema.exceptions._RefResolutionError: [Errno 2] No such file or directory: 'file:/tmp/pytest-of-ubuntu/pytest-0/test_config_ref0/schema/bar.schema.yaml' 1260s 1260s /usr/lib/python3/dist-packages/jsonschema/validators.py:1101: _RefResolutionError 1260s ------------------------------ Captured log call ------------------------------- 1260s CRITICAL snakemake.logging:logging.py:582 No validator found for JSON Schema version identifier 'https://json-schema.org/draft/2020-12/schema#' 1260s CRITICAL snakemake.logging:logging.py:582 Defaulting to validator for JSON Schema version 'https://json-schema.org/draft/2020-12/schema' 1260s CRITICAL snakemake.logging:logging.py:582 Note that schema file may not be validated correctly. 1260s =============================== warnings summary =============================== 1260s tests/test_schema.py: 10 warnings 1260s tests/tests.py: 6 warnings 1260s /usr/lib/python3/dist-packages/snakemake/utils.py:50: DeprecationWarning: jsonschema.RefResolver is deprecated as of v4.18.0, in favor of the https://github.com/python-jsonschema/referencing library, which provides more compliant referencing behavior as well as more flexible APIs for customization. A future release will remove RefResolver. Please file a feature request (on referencing) if you are missing an API for the kind of customization you need. 1260s from jsonschema import validators, RefResolver 1260s 1260s tests/testapi.py::test_keep_logger 1260s /usr/lib/python3/dist-packages/stopit/__init__.py:10: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 1260s import pkg_resources 1260s 1260s tests/testapi.py::test_lockexception 1260s /usr/lib/python3/dist-packages/_pytest/python.py:170: PytestReturnNotNoneWarning: Test functions should return None, but tests/testapi.py::test_lockexception returned . 1260s Did you mean to use `assert` instead of `return`? 1260s See https://docs.pytest.org/en/stable/how-to/assert.html#return-not-none for more information. 1260s warnings.warn( 1260s 1260s tests/tests.py::test_glpk_solver 1260s :898: DeprecationWarning: This process (pid=3819) is multi-threaded, use of fork() may lead to deadlocks in the child. 1260s 1260s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 1260s =========================== short test summary info ============================ 1260s FAILED tests/test_schema.py::test_config_ref - jsonschema.exceptions._RefReso... 1260s = 1 failed, 251 passed, 46 skipped, 97 deselected, 19 warnings in 1071.75s (0:17:51) = 1260s autopkgtest [20:48:23]: test run-unit-test: -----------------------] 1261s run-unit-test FAIL non-zero exit status 1 1261s autopkgtest [20:48:24]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 1261s autopkgtest [20:48:24]: @@@@@@@@@@@@@@@@@@@@ summary 1261s command1 PASS 1261s run-unit-test FAIL non-zero exit status 1