0s autopkgtest [19:36:55]: starting date and time: 2026-02-05 19:36:55+0000 0s autopkgtest [19:36:55]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [19:36:55]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.33dyzhzi/out --timeout-copy=6000 --needs-internet=try -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-testthat --apt-upgrade r-cran-stars --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-testthat/3.3.2-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-27.secgroup --name adt-resolute-i386-r-cran-stars-20260205-193654-juju-7f2275-prod-proposed-migration-environment-2-ef8e8637-8615-4a32-9cef-89ce532dc529 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-i386-r-cran-stars-20260205-193654-juju-7f2275-prod-proposed-migration-environment-2-ef8e8637-8615-4a32-9cef-89ce532dc529 from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)... 73s autopkgtest [19:38:08]: testbed dpkg architecture: amd64 74s autopkgtest [19:38:09]: testbed apt version: 3.1.14 74s autopkgtest [19:38:09]: @@@@@@@@@@@@@@@@@@@@ test bed setup 74s autopkgtest [19:38:09]: testbed release detected to be: None 75s autopkgtest [19:38:10]: updating testbed package index (apt update) 75s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 75s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 75s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 75s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 75s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [35.2 kB] 75s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1759 kB] 75s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [231 kB] 75s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 75s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [277 kB] 75s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [205 kB] 75s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [7260 B] 76s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [32.9 kB] 76s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3692 B] 76s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 76s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1541 kB] 76s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [603 kB] 76s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [40.1 kB] 76s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [29.9 kB] 76s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5460 B] 76s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [1116 B] 77s Fetched 4901 kB in 1s (5081 kB/s) 77s Reading package lists... 78s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 78s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 78s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 78s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 78s Reading package lists... 78s Reading package lists... 78s Building dependency tree... 78s Reading state information... 79s Calculating upgrade... 79s The following packages will be upgraded: 79s amd64-microcode pollinate python3-linkify-it python3-referencing sed 79s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 79s Need to get 561 kB of archives. 79s After this operation, 4096 B disk space will be freed. 79s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB] 79s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 79s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB] 79s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 79s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20250708.1ubuntu2 [310 kB] 79s dpkg-preconfigure: unable to re-open stdin: No such file or directory 79s Fetched 561 kB in 0s (55.6 MB/s) 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 79s Preparing to unpack .../sed_4.9-2build3_amd64.deb ... 79s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 79s Setting up sed (4.9-2build3) ... 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 79s Preparing to unpack .../python3-linkify-it_2.0.3-1ubuntu3_all.deb ... 79s Unpacking python3-linkify-it (2.0.3-1ubuntu3) over (2.0.3-1ubuntu2) ... 79s Preparing to unpack .../pollinate_4.33-4ubuntu5_all.deb ... 79s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ... 79s Preparing to unpack .../python3-referencing_0.36.2-1ubuntu2_all.deb ... 79s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ... 79s Preparing to unpack .../amd64-microcode_3.20250708.1ubuntu2_amd64.deb ... 79s Unpacking amd64-microcode (3.20250708.1ubuntu2) over (3.20250708.1ubuntu1) ... 79s Setting up amd64-microcode (3.20250708.1ubuntu2) ... 79s amd64-microcode: microcode will be updated at next boot 79s Setting up pollinate (4.33-4ubuntu5) ... 90s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 90s Setting up python3-referencing (0.36.2-1ubuntu2) ... 90s Processing triggers for install-info (7.2-5) ... 90s Processing triggers for man-db (2.13.1-1) ... 90s Processing triggers for initramfs-tools (0.150ubuntu7) ... 90s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 95s autopkgtest [19:38:30]: upgrading testbed (apt dist-upgrade and autopurge) 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 95s Calculating upgrade... 95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 96s Reading package lists... 96s Building dependency tree... 96s Reading state information... 96s Solving dependencies... 96s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 96s autopkgtest [19:38:31]: rebooting testbed after setup commands that affected boot 125s autopkgtest [19:39:00]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:49:02 UTC 2026 127s autopkgtest [19:39:02]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-stars 129s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-cran-stars 0.6-8-1 (dsc) [2749 B] 129s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-cran-stars 0.6-8-1 (tar) [4038 kB] 129s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-cran-stars 0.6-8-1 (diff) [4400 B] 129s gpgv: Signature made Wed Feb 19 23:48:57 2025 UTC 129s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 129s gpgv: issuer "plessy@debian.org" 129s gpgv: Can't check signature: No public key 129s dpkg-source: warning: cannot verify inline signature for ./r-cran-stars_0.6-8-1.dsc: no acceptable signature found 129s autopkgtest [19:39:04]: testing package r-cran-stars version 0.6-8-1 130s autopkgtest [19:39:05]: build not needed 132s autopkgtest [19:39:07]: test run-unit-test: preparing testbed 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 132s Solving dependencies... 132s Some packages could not be installed. This may mean that you have 132s requested an impossible situation or if you are using the unstable 132s distribution that some required packages have not yet been created 132s or been moved out of Incoming. 132s The following information may help to resolve the situation: 132s 132s The following packages have unmet dependencies: 132s satisfy:command-line : Depends: r-cran-stars but it is not going to be installed 132s Depends: r-cran-cairo but it is not going to be installed 132s Depends: r-cran-pcict but it is not going to be installed 132s Depends: r-cran-rnetcdf (>= 1.8-2) but it is not going to be installed 132s Depends: r-cran-clue but it is not going to be installed 132s Depends: r-cran-covr but it is not going to be installed 132s Depends: r-cran-cubelyr but it is not going to be installed 132s Depends: r-cran-digest but it is not going to be installed 132s Depends: r-cran-dplyr (>= 0.7-0) but it is not going to be installed 132s Depends: r-cran-exactextractr but it is not going to be installed 132s Depends: r-cran-fnn but it is not going to be installed 132s Depends: r-cran-future.apply but it is not going to be installed 132s Depends: r-cran-ggforce but it is not going to be installed 132s Depends: r-cran-ggplot2 but it is not going to be installed 132s Depends: r-cran-ggthemes but it is not going to be installed 132s Depends: r-cran-gstat but it is not going to be installed 132s Depends: r-cran-httr but it is not going to be installed 132s Depends: r-cran-jsonlite but it is not going to be installed 132s Depends: r-cran-knitr but it is not going to be installed 132s Depends: r-cran-lwgeom but it is not going to be installed 132s Depends: r-cran-maps but it is not going to be installed 132s Depends: r-cran-mapdata but it is not going to be installed 132s Depends: r-cran-ncdfgeom but it is not going to be installed 132s Depends: r-cran-ncmeta (>= 0.0.3) but it is not going to be installed 132s Depends: r-cran-pbapply but it is not going to be installed 132s Depends: r-cran-plm but it is not going to be installed 132s Depends: r-cran-randomforest but it is not going to be installed 132s Depends: r-cran-raster but it is not going to be installed 132s Depends: r-cran-rmarkdown but it is not going to be installed 132s Depends: r-cran-sp but it is not going to be installed 132s Depends: r-cran-spacetime but it is not going to be installed 132s Depends: r-cran-spatstat (>= 2.0-1) but it is not going to be installed 132s Depends: r-cran-spatstat.geom but it is not going to be installed 132s Depends: r-cran-terra (>= 1.4-22) but it is not going to be installed 132s Depends: r-cran-testthat but it is not going to be installed 132s Depends: r-cran-tibble but it is not going to be installed 132s Depends: r-cran-tidyr but it is not going to be installed 132s Depends: r-cran-viridis but it is not going to be installed 132s Depends: r-cran-xts but it is not going to be installed 132s Depends: r-cran-zoo but it is not going to be installed 132s E: Unable to satisfy dependencies. Reached two conflicting assignments: 132s 1. r-cran-mime:amd64 is selected for install because: 132s 1. satisfy:command-line:amd64=1 is selected for install 132s 2. satisfy:command-line:amd64 Depends r-cran-httr 132s 3. r-cran-httr:amd64 Depends r-cran-mime 132s 2. r-cran-mime:amd64 is available in versions 0.12-2, 0.13-1 132s but none of the choices are installable: 132s - r-cran-mime:amd64=0.12-2 is not selected for install 132s - r-cran-mime:amd64=0.13-1 is not selected for install 132s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from resolute-proposed 133s Reading package lists... 133s Building dependency tree... 133s Reading state information... 133s Solving dependencies... 133s The following NEW packages will be installed: 133s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 133s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gdal-data 133s gdal-plugins javascript-common libabsl20260107 libaec0 libaom3 133s libarmadillo15 libarpack2t64 libavif16 libblas3 libblosc1 libcairo2 133s libcfitsio10t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libfontconfig1 133s libfreexl1 libfyba0t64 libgav1-2 libgdal38 libgeos-c1t64 libgeos3.14.1 133s libgeotiff5 libgfortran5 libgif7 libgomp1 libgpgmepp6t64 libgraphite2-3 133s libharfbuzz0b libhdf4-0 libhdf5-310 libhdf5-hl-310 libheif-plugin-aomdec 133s libheif-plugin-libde265 libheif1 libhwy1t64 libice6 libjbig0 libjpeg-turbo8 133s libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 133s libjs-highlight.js libjs-jquery libjs-jquery-datatables 133s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 133s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 133s libjs-sifter.js libjs-twitter-bootstrap-datepicker libjxl0.11 libkmlbase1t64 133s libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 libltdl7 133s liblua5.4-0 libminizip1t64 libmuparser2v5 libmysqlclient24 libnetcdf22 133s libodbc2 libodbcinst2 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 133s libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpoppler147 133s libpq5 libproj25 libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 133s libspatialite8t64 libsuperlu7 libsz2 libtcl8.6 libthai-data libthai0 133s libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 libwebp7 133s libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 133s libxt6t64 libyuv0 mysql-common node-bootstrap-sass node-html5shiv 133s node-normalize.css pandoc pandoc-data proj-data r-base-core r-cran-abind 133s r-cran-areal r-cran-askpass r-cran-base64enc r-cran-bdsmatrix r-cran-brio 133s r-cran-bslib r-cran-cachem r-cran-cairo r-cran-callr r-cran-cftime 133s r-cran-class r-cran-classint r-cran-cli r-cran-clue r-cran-cluster 133s r-cran-codetools r-cran-collapse r-cran-commonmark r-cran-covr r-cran-cpp11 133s r-cran-crayon r-cran-cubelyr r-cran-curl r-cran-dbi r-cran-deldir 133s r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 133s r-cran-evaluate r-cran-exactextractr r-cran-fansi r-cran-farver 133s r-cran-fastmap r-cran-fnn r-cran-fontawesome r-cran-formula r-cran-fs 133s r-cran-future r-cran-future.apply r-cran-generics r-cran-ggforce 133s r-cran-ggplot2 r-cran-ggthemes r-cran-globals r-cran-glue r-cran-goftest 133s r-cran-gridextra r-cran-gstat r-cran-gtable r-cran-highr r-cran-htmltools 133s r-cran-httpuv r-cran-httr r-cran-intervals r-cran-isoband r-cran-jquerylib 133s r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later 133s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-listenv 133s r-cran-littler r-cran-lmtest r-cran-lwgeom r-cran-magrittr r-cran-mapdata 133s r-cran-maps r-cran-mass r-cran-matrix r-cran-maxlik r-cran-memoise 133s r-cran-mgcv r-cran-mime r-cran-misctools r-cran-ncdfgeom r-cran-ncmeta 133s r-cran-nlme r-cran-openssl r-cran-parallelly r-cran-pbapply r-cran-pcict 133s r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 133s r-cran-pkgload r-cran-plm r-cran-polyclip r-cran-praise r-cran-processx 133s r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr r-cran-r6 133s r-cran-randomforest r-cran-rappdirs r-cran-raster r-cran-rbibutils 133s r-cran-rcolorbrewer r-cran-rcpp r-cran-rdpack r-cran-rex r-cran-rlang 133s r-cran-rmarkdown r-cran-rnetcdf r-cran-rpart r-cran-rprojroot r-cran-s2 133s r-cran-s7 r-cran-sandwich r-cran-sass r-cran-scales r-cran-sf r-cran-sftime 133s r-cran-shiny r-cran-sourcetools r-cran-sp r-cran-spacetime r-cran-spatstat 133s r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom 133s r-cran-spatstat.linnet r-cran-spatstat.model r-cran-spatstat.random 133s r-cran-spatstat.sparse r-cran-spatstat.univar r-cran-spatstat.utils 133s r-cran-stars r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 133s r-cran-systemfonts r-cran-tensor r-cran-terra r-cran-testthat r-cran-tibble 133s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tweenr r-cran-units 133s r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-waldo 133s r-cran-withr r-cran-wk r-cran-xfun r-cran-xtable r-cran-xts r-cran-yaml 133s r-cran-zoo unixodbc-common unzip x11-common xdg-utils zip 133s 0 upgraded, 292 newly installed, 0 to remove and 174 not upgraded. 133s Need to get 299 MB of archives. 133s After this operation, 774 MB of additional disk space will be used. 133s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 133s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 134s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB] 134s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB] 134s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB] 134s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 134s Get:7 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 134s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 134s Get:9 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-data all 3.12.1+dfsg-1 [278 kB] 134s Get:10 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-plugins amd64 3.12.1+dfsg-1 [26.8 kB] 134s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 javascript-common all 12+nmu1build1 [4864 B] 134s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libabsl20260107 amd64 20260107.0-1 [587 kB] 134s Get:13 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.5-1 [22.5 kB] 134s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libaom3 amd64 3.13.1-2 [1970 kB] 134s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 134s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-12ubuntu1 [939 kB] 134s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 134s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 libarpack2t64 amd64 3.9.1-6build1 [106 kB] 134s Get:19 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsuperlu7 amd64 7.0.1+dfsg1-2 [186 kB] 134s Get:20 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarmadillo15 amd64 1:15.2.1+dfsg-2 [109 kB] 134s Get:21 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdav1d7 amd64 1.5.3-1 [626 kB] 134s Get:22 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgav1-2 amd64 0.20.0-2build1 [402 kB] 134s Get:23 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu3 [156 kB] 134s Get:24 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libjpeg8 amd64 8c-2ubuntu12 [2142 B] 134s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libyuv0 amd64 0.0.1922.20260106-1 [184 kB] 134s Get:26 http://ftpmaster.internal/ubuntu resolute/universe amd64 libavif16 amd64 1.3.0-1ubuntu3 [117 kB] 134s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libsnappy1v5 amd64 1.2.2-2 [30.8 kB] 134s Get:28 http://ftpmaster.internal/ubuntu resolute/universe amd64 libblosc1 amd64 1.21.5+ds-2 [35.8 kB] 134s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 134s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB] 134s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B] 134s Get:32 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libxrender1 amd64 1:0.9.12-1build1 [19.2 kB] 134s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 134s Get:34 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcfitsio10t64 amd64 4.6.3-1 [549 kB] 134s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB] 134s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libde265-0 amd64 1.0.16-1build1 [172 kB] 134s Get:37 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libdeflate0 amd64 1.23-2build1 [51.6 kB] 134s Get:38 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfyba0t64 amd64 4.1.1-11build2 [120 kB] 134s Get:39 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu3 [22.6 kB] 134s Get:40 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfreexl1 amd64 2.0.0-1build3 [42.9 kB] 134s Get:41 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos3.14.1 amd64 3.14.1-2 [976 kB] 134s Get:42 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos-c1t64 amd64 3.14.1-2 [116 kB] 134s Get:43 http://ftpmaster.internal/ubuntu resolute/universe amd64 proj-data all 9.7.1-1 [7950 kB] 134s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 134s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 134s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 134s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 134s Get:48 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libtiff6 amd64 4.7.0-3ubuntu4 [209 kB] 134s Get:49 http://ftpmaster.internal/ubuntu resolute/universe amd64 libproj25 amd64 9.7.1-1 [1499 kB] 134s Get:50 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 libgeotiff5 amd64 1.7.4-1build1 [61.5 kB] 134s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libgif7 amd64 5.2.2-1ubuntu3 [36.0 kB] 134s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.5-1 [17.9 kB] 134s Get:53 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf4-0 amd64 4.3.1-2 [318 kB] 134s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.6+repack-2 [1433 kB] 134s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-aomdec amd64 1.21.2-1 [14.2 kB] 134s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-libde265 amd64 1.21.2-1 [9978 B] 134s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif1 amd64 1.21.2-1 [544 kB] 134s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwy1t64 amd64 1.3.0-2 [768 kB] 134s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.17-1 [170 kB] 135s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libjxl0.11 amd64 0.11.1-6ubuntu1 [1122 kB] 135s Get:61 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 liburiparser1 amd64 0.9.8+dfsg-2build1 [37.6 kB] 135s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlbase1t64 amd64 1.3.0-13 [51.7 kB] 135s Get:63 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmldom1t64 amd64 1.3.0-13 [156 kB] 135s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlengine1t64 amd64 1.3.0-13 [74.1 kB] 135s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-12ubuntu1 [151 kB] 135s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmuparser2v5 amd64 2.3.4-2 [143 kB] 135s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 mysql-common all 5.8+1.1.1ubuntu2 [7002 B] 135s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libmysqlclient24 amd64 8.4.8-0ubuntu1 [1258 kB] 135s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.6+repack-2 [59.9 kB] 135s Get:70 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnetcdf22 amd64 1:4.9.3-1build1 [561 kB] 135s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libltdl7 amd64 2.5.4-9 [43.7 kB] 135s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbc2 amd64 2.3.14-1 [160 kB] 135s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 unixodbc-common all 2.3.14-1 [8792 B] 135s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbcinst2 amd64 2.3.14-1 [32.0 kB] 135s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.4-1 [188 kB] 135s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpgmepp6t64 amd64 1.24.2-3ubuntu2 [124 kB] 135s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libpoppler147 amd64 25.03.0-11.1 [1224 kB] 135s Get:78 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpq5 amd64 18.1-2build1 [155 kB] 135s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-8 [197 kB] 135s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 librttopo1 amd64 1.1.0-4 [205 kB] 135s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 libspatialite8t64 amd64 5.1.0-3ubuntu1 [1927 kB] 135s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3build2 [991 kB] 135s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgdal38 amd64 3.12.1+dfsg-1 [11.4 MB] 135s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 135s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB] 135s Get:86 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 x11-common all 1:7.7+24ubuntu2 [22.4 kB] 135s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB] 135s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 135s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB] 135s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 135s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-d3 all 3.5.17-4build1 [136 kB] 135s Get:92 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 135s Get:93 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 135s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 135s Get:95 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 135s Get:96 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 135s Get:97 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B] 135s Get:98 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 135s Get:99 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB] 135s Get:100 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB] 135s Get:101 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-prettify all 2015.12.04+dfsg-2 [41.3 kB] 135s Get:102 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 liblua5.4-0 amd64 5.4.8-1build1 [163 kB] 135s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB] 135s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB] 135s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB] 135s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB] 135s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB] 135s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB] 135s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB] 135s Get:110 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB] 135s Get:111 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB] 135s Get:112 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 135s Get:113 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 135s Get:114 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libtk8.6 amd64 8.6.17-1build1 [793 kB] 135s Get:115 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-data all 2.2.28-8 [19.3 kB] 135s Get:116 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-0 amd64 2.2.28-8 [54.6 kB] 135s Get:117 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB] 135s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 135s Get:119 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 135s Get:120 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 135s Get:121 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 135s Get:122 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc amd64 3.1.11.1+ds-4 [27.2 MB] 136s Get:123 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 zip amd64 3.0-15ubuntu3 [175 kB] 136s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB] 136s Get:125 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 136s Get:126 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB] 137s Get:127 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-abind all 1.4-8-1build1 [67.0 kB] 137s Get:128 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-cli amd64 3.6.5-1 [1383 kB] 137s Get:129 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-generics all 0.1.4-1 [84.0 kB] 137s Get:130 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 137s Get:131 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-rlang amd64 1.1.6-1 [1708 kB] 137s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 137s Get:133 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-magrittr amd64 2.0.4-1 [160 kB] 137s Get:134 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-utf8 amd64 1.2.6-1 [145 kB] 137s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 137s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB] 137s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 137s Get:138 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-fansi amd64 1.0.7-1 [798 kB] 137s Get:139 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 137s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 137s Get:141 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 137s Get:142 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 137s Get:143 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 137s Get:144 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 137s Get:145 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB] 137s Get:146 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 137s Get:147 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 137s Get:148 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-e1071 amd64 1.7-17-1 [579 kB] 137s Get:149 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-kernsmooth amd64 2.23-26-1build1 [93.6 kB] 137s Get:150 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-classint amd64 0.4-11+dfsg-1 [108 kB] 137s Get:151 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbi all 1.2.3-1build1 [855 kB] 137s Get:152 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-littler amd64 0.3.22-1 [85.5 kB] 137s Get:153 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 137s Get:154 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-rcpp amd64 1.1.1-2 [2055 kB] 137s Get:155 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-wk amd64 0.9.5-1 [1793 kB] 137s Get:156 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s2 amd64 1.1.9-1build1 [1815 kB] 138s Get:157 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-units amd64 1.0-0+dfsg-1 [315 kB] 138s Get:158 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-sf amd64 1.0-24+dfsg-1 [3307 kB] 138s Get:159 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-areal all 0.1.8+dfsg-2 [1004 kB] 138s Get:160 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 138s Get:161 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 138s Get:162 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-base64enc amd64 0.1-6-1 [30.7 kB] 138s Get:163 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bdsmatrix amd64 1.3-7-1 [299 kB] 138s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 138s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 138s Get:166 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 138s Get:167 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB] 138s Get:168 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-htmltools amd64 0.5.9-1 [373 kB] 138s Get:169 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB] 138s Get:170 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-jsonlite amd64 2.0.0+dfsg-1 [447 kB] 138s Get:171 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-memoise all 2.0.1-1build1 [54.5 kB] 138s Get:172 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-mime amd64 0.13-1 [47.4 kB] 138s Get:173 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-fs amd64 1.6.6+dfsg-1 [245 kB] 138s Get:174 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-rappdirs amd64 0.3.4-1 [50.1 kB] 138s Get:175 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 138s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB] 138s Get:177 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-cairo amd64 1.7-0-1 [91.1 kB] 138s Get:178 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-ps amd64 1.9.1-1 [409 kB] 138s Get:179 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 138s Get:180 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 138s Get:181 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cftime all 1.7.2-1 [918 kB] 138s Get:182 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cluster amd64 2.1.8.1-1build1 [570 kB] 138s Get:183 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-clue amd64 0.3-66-1 [968 kB] 138s Get:184 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-codetools all 0.2-20-1build1 [91.1 kB] 138s Get:185 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-collapse amd64 2.1.6-1 [3317 kB] 138s Get:186 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-commonmark amd64 2.0.0-1 [135 kB] 138s Get:187 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lazyeval amd64 0.2.2-1build2 [146 kB] 138s Get:188 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rex all 1.2.1-1build1 [126 kB] 138s Get:189 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-curl amd64 7.0.0+dfsg-1 [202 kB] 138s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 138s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 138s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 138s Get:193 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-covr amd64 3.6.5+dfsg-1 [323 kB] 138s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cpp11 all 0.5.3-1 [242 kB] 138s Get:195 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 138s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cubelyr all 1.0.2-1 [347 kB] 138s Get:197 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 138s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 138s Get:199 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-diffobj amd64 0.3.6-1 [1156 kB] 138s Get:200 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-evaluate all 1.0.5-1 [117 kB] 138s Get:201 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lattice amd64 0.22-7-1 [1367 kB] 138s Get:202 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sp amd64 1:2.2-0+dfsg-1 [1444 kB] 138s Get:203 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-terra amd64 1.8-70-1build2 [4344 kB] 139s Get:204 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-raster amd64 3.6-32-1 [3186 kB] 139s Get:205 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-exactextractr amd64 0.10.1-1 [587 kB] 139s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 139s Get:207 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB] 139s Get:208 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 139s Get:209 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 139s Get:210 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-globals all 0.19.0-1 [160 kB] 139s Get:211 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-listenv all 0.10.0+dfsg-1 [113 kB] 139s Get:212 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-parallelly amd64 1.46.0-1 [593 kB] 139s Get:213 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-future all 1.69.0+dfsg-1 [910 kB] 139s Get:214 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-future.apply all 1.20.1+dfsg-1 [190 kB] 139s Get:215 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 139s Get:216 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-isoband amd64 0.3.0-1 [1513 kB] 139s Get:217 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-s7 amd64 0.2.1-1 [330 kB] 139s Get:218 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 139s Get:219 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 139s Get:220 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 139s Get:221 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB] 139s Get:222 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-ggplot2 all 4.0.1+dfsg-1 [4935 kB] 140s Get:223 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tweenr amd64 2.0.3-1 [410 kB] 140s Get:224 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB] 140s Get:225 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-systemfonts amd64 1.3.1-1 [690 kB] 140s Get:226 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-ggforce amd64 0.5.0-1 [1935 kB] 140s Get:227 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringi amd64 1.8.4-1build2 [908 kB] 140s Get:228 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 140s Get:229 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggthemes all 5.2.0-1 [760 kB] 140s Get:230 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-goftest amd64 1.2-3-1build1 [60.5 kB] 140s Get:231 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gridextra all 2.3-3build2 [1032 kB] 140s Get:232 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-zoo amd64 1.8-15-1 [1025 kB] 140s Get:233 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sftime all 0.2-0-6 [168 kB] 140s Get:234 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xts amd64 0.14.1-1 [1198 kB] 140s Get:235 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-intervals amd64 0.15.5-1 [602 kB] 140s Get:236 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spacetime all 1.3-3-2 [2780 kB] 140s Get:237 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stars all 0.6-8-1 [4414 kB] 140s Get:238 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gstat amd64 2.1-3-2 [2334 kB] 140s Get:239 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB] 140s Get:240 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 140s Get:241 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-later amd64 1.4.5+dfsg-1 [146 kB] 140s Get:242 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 140s Get:243 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-httpuv amd64 1.6.16+dfsg-1 [532 kB] 140s Get:244 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 141s Get:245 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 141s Get:246 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lmtest amd64 0.9.40-1build1 [400 kB] 141s Get:247 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lwgeom amd64 0.2-14-1 [463 kB] 141s Get:248 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-maps amd64 3.4.3-1 [2351 kB] 141s Get:249 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mapdata amd64 2.3.1-1 [23.5 MB] 141s Get:250 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrix amd64 1.7-4-1 [4220 kB] 141s Get:251 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-misctools all 0.6-28-1 [99.9 kB] 141s Get:252 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sandwich all 3.1-1-1build1 [1483 kB] 141s Get:253 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-maxlik all 1.5-2.2-1 [1115 kB] 141s Get:254 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-nlme amd64 3.1.168-1 [2320 kB] 141s Get:255 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mgcv amd64 1.9-4-1 [3556 kB] 141s Get:256 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-rnetcdf amd64 2.11-1-1 [242 kB] 142s Get:257 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 142s Get:258 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ncmeta all 0.4.0-1 [362 kB] 142s Get:259 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ncdfgeom all 1.1.6+dfsg-1 [4124 kB] 142s Get:260 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 142s Get:261 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pcict amd64 0.5-4.4-1 [94.4 kB] 142s Get:262 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgbuild all 1.4.8-1 [219 kB] 142s Get:263 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rprojroot all 2.1.1-1 [131 kB] 142s Get:264 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgload all 1.4.1-1 [252 kB] 142s Get:265 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-rbibutils amd64 2.4.1-1 [1076 kB] 142s Get:266 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-rdpack all 2.6.5-1 [635 kB] 142s Get:267 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plm all 2.6-7-1 [1823 kB] 142s Get:268 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-praise all 1.0.0-4build2 [20.9 kB] 142s Get:269 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-randomforest amd64 4.7-1.2-1 [216 kB] 142s Get:270 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tinytex all 0.58-1 [148 kB] 142s Get:271 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-modernizr all 3.13.0-0.1build1 [100 kB] 142s Get:272 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xtable all 1:1.8-4-2build1 [691 kB] 142s Get:273 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 142s Get:274 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 142s Get:275 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 142s Get:276 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-rmarkdown all 2.30+dfsg-1 [1501 kB] 142s Get:277 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-survival amd64 3.8-6-1 [8274 kB] 142s Get:278 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rpart amd64 4.1.24-1build1 [666 kB] 142s Get:279 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.utils amd64 3.1-3-1 [387 kB] 142s Get:280 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.data all 3.1-6-1 [4153 kB] 142s Get:281 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.univar amd64 3.1-2-1 [315 kB] 142s Get:282 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.geom amd64 3.3-6-1 [3968 kB] 142s Get:283 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.random amd64 3.3-3-1 [1177 kB] 143s Get:284 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tensor all 1.5-4build1 [16.3 kB] 143s Get:285 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.sparse amd64 3.1-0-1 [221 kB] 143s Get:286 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.explore amd64 3.3-4-1 [3347 kB] 143s Get:287 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.model amd64 3.3-4-1 [3397 kB] 143s Get:288 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.linnet amd64 3.2-5-1 [1509 kB] 143s Get:289 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat amd64 3.3-1-1 [4121 kB] 143s Get:290 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-waldo all 0.6.2-1 [153 kB] 143s Get:291 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-testthat amd64 3.3.2-1 [1890 kB] 143s Get:292 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 143s Preconfiguring packages ... 143s Fetched 299 MB in 10s (30.3 MB/s) 143s Selecting previously unselected package fonts-dejavu-mono. 144s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 144s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8build1_all.deb ... 144s Unpacking fonts-dejavu-mono (2.37-8build1) ... 144s Selecting previously unselected package fonts-dejavu-core. 144s Preparing to unpack .../001-fonts-dejavu-core_2.37-8build1_all.deb ... 144s Unpacking fonts-dejavu-core (2.37-8build1) ... 144s Selecting previously unselected package fontconfig-config. 144s Preparing to unpack .../002-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ... 144s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 144s Selecting previously unselected package libfontconfig1:amd64. 144s Preparing to unpack .../003-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ... 144s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ... 144s Selecting previously unselected package fontconfig. 144s Preparing to unpack .../004-fontconfig_2.17.1-3ubuntu1_amd64.deb ... 144s Unpacking fontconfig (2.17.1-3ubuntu1) ... 144s Selecting previously unselected package fonts-font-awesome. 144s Preparing to unpack .../005-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ... 144s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 144s Selecting previously unselected package fonts-glyphicons-halflings. 144s Preparing to unpack .../006-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 144s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 144s Selecting previously unselected package fonts-mathjax. 144s Preparing to unpack .../007-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ... 144s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ... 144s Selecting previously unselected package gdal-data. 144s Preparing to unpack .../008-gdal-data_3.12.1+dfsg-1_all.deb ... 144s Unpacking gdal-data (3.12.1+dfsg-1) ... 144s Selecting previously unselected package gdal-plugins:amd64. 144s Preparing to unpack .../009-gdal-plugins_3.12.1+dfsg-1_amd64.deb ... 144s Unpacking gdal-plugins:amd64 (3.12.1+dfsg-1) ... 144s Selecting previously unselected package javascript-common. 144s Preparing to unpack .../010-javascript-common_12+nmu1build1_all.deb ... 144s Unpacking javascript-common (12+nmu1build1) ... 144s Selecting previously unselected package libabsl20260107:amd64. 144s Preparing to unpack .../011-libabsl20260107_20260107.0-1_amd64.deb ... 144s Unpacking libabsl20260107:amd64 (20260107.0-1) ... 144s Selecting previously unselected package libaec0:amd64. 144s Preparing to unpack .../012-libaec0_1.1.5-1_amd64.deb ... 144s Unpacking libaec0:amd64 (1.1.5-1) ... 144s Selecting previously unselected package libaom3:amd64. 144s Preparing to unpack .../013-libaom3_3.13.1-2_amd64.deb ... 144s Unpacking libaom3:amd64 (3.13.1-2) ... 144s Selecting previously unselected package libblas3:amd64. 144s Preparing to unpack .../014-libblas3_3.12.1-7ubuntu1_amd64.deb ... 144s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ... 144s Selecting previously unselected package libgfortran5:amd64. 144s Preparing to unpack .../015-libgfortran5_15.2.0-12ubuntu1_amd64.deb ... 144s Unpacking libgfortran5:amd64 (15.2.0-12ubuntu1) ... 144s Selecting previously unselected package liblapack3:amd64. 144s Preparing to unpack .../016-liblapack3_3.12.1-7ubuntu1_amd64.deb ... 144s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ... 144s Selecting previously unselected package libarpack2t64:amd64. 144s Preparing to unpack .../017-libarpack2t64_3.9.1-6build1_amd64.deb ... 144s Unpacking libarpack2t64:amd64 (3.9.1-6build1) ... 144s Selecting previously unselected package libsuperlu7:amd64. 144s Preparing to unpack .../018-libsuperlu7_7.0.1+dfsg1-2_amd64.deb ... 144s Unpacking libsuperlu7:amd64 (7.0.1+dfsg1-2) ... 144s Selecting previously unselected package libarmadillo15. 144s Preparing to unpack .../019-libarmadillo15_1%3a15.2.1+dfsg-2_amd64.deb ... 144s Unpacking libarmadillo15 (1:15.2.1+dfsg-2) ... 144s Selecting previously unselected package libdav1d7:amd64. 144s Preparing to unpack .../020-libdav1d7_1.5.3-1_amd64.deb ... 144s Unpacking libdav1d7:amd64 (1.5.3-1) ... 144s Selecting previously unselected package libgav1-2:amd64. 144s Preparing to unpack .../021-libgav1-2_0.20.0-2build1_amd64.deb ... 144s Unpacking libgav1-2:amd64 (0.20.0-2build1) ... 144s Selecting previously unselected package libjpeg-turbo8:amd64. 144s Preparing to unpack .../022-libjpeg-turbo8_2.1.5-4ubuntu3_amd64.deb ... 144s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu3) ... 144s Selecting previously unselected package libjpeg8:amd64. 144s Preparing to unpack .../023-libjpeg8_8c-2ubuntu12_amd64.deb ... 144s Unpacking libjpeg8:amd64 (8c-2ubuntu12) ... 144s Selecting previously unselected package libyuv0:amd64. 144s Preparing to unpack .../024-libyuv0_0.0.1922.20260106-1_amd64.deb ... 144s Unpacking libyuv0:amd64 (0.0.1922.20260106-1) ... 144s Selecting previously unselected package libavif16:amd64. 144s Preparing to unpack .../025-libavif16_1.3.0-1ubuntu3_amd64.deb ... 144s Unpacking libavif16:amd64 (1.3.0-1ubuntu3) ... 144s Selecting previously unselected package libsnappy1v5:amd64. 144s Preparing to unpack .../026-libsnappy1v5_1.2.2-2_amd64.deb ... 144s Unpacking libsnappy1v5:amd64 (1.2.2-2) ... 144s Selecting previously unselected package libblosc1:amd64. 144s Preparing to unpack .../027-libblosc1_1.21.5+ds-2_amd64.deb ... 144s Unpacking libblosc1:amd64 (1.21.5+ds-2) ... 144s Selecting previously unselected package libpixman-1-0:amd64. 144s Preparing to unpack .../028-libpixman-1-0_0.46.4-1_amd64.deb ... 144s Unpacking libpixman-1-0:amd64 (0.46.4-1) ... 144s Selecting previously unselected package libxcb-render0:amd64. 144s Preparing to unpack .../029-libxcb-render0_1.17.0-2ubuntu1_amd64.deb ... 144s Unpacking libxcb-render0:amd64 (1.17.0-2ubuntu1) ... 144s Selecting previously unselected package libxcb-shm0:amd64. 144s Preparing to unpack .../030-libxcb-shm0_1.17.0-2ubuntu1_amd64.deb ... 144s Unpacking libxcb-shm0:amd64 (1.17.0-2ubuntu1) ... 144s Selecting previously unselected package libxrender1:amd64. 144s Preparing to unpack .../031-libxrender1_1%3a0.9.12-1build1_amd64.deb ... 144s Unpacking libxrender1:amd64 (1:0.9.12-1build1) ... 144s Selecting previously unselected package libcairo2:amd64. 144s Preparing to unpack .../032-libcairo2_1.18.4-3_amd64.deb ... 144s Unpacking libcairo2:amd64 (1.18.4-3) ... 144s Selecting previously unselected package libcfitsio10t64:amd64. 144s Preparing to unpack .../033-libcfitsio10t64_4.6.3-1_amd64.deb 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previously unselected package libheif-plugin-libde265:amd64. 145s Preparing to unpack .../055-libheif-plugin-libde265_1.21.2-1_amd64.deb ... 145s Unpacking libheif-plugin-libde265:amd64 (1.21.2-1) ... 145s Selecting previously unselected package libheif1:amd64. 145s Preparing to unpack .../056-libheif1_1.21.2-1_amd64.deb ... 145s Unpacking libheif1:amd64 (1.21.2-1) ... 145s Selecting previously unselected package libhwy1t64:amd64. 145s Preparing to unpack .../057-libhwy1t64_1.3.0-2_amd64.deb ... 145s Unpacking libhwy1t64:amd64 (1.3.0-2) ... 145s Selecting previously unselected package liblcms2-2:amd64. 145s Preparing to unpack .../058-liblcms2-2_2.17-1_amd64.deb ... 145s Unpacking liblcms2-2:amd64 (2.17-1) ... 145s Selecting previously unselected package libjxl0.11:amd64. 145s Preparing to unpack .../059-libjxl0.11_0.11.1-6ubuntu1_amd64.deb ... 145s Unpacking libjxl0.11:amd64 (0.11.1-6ubuntu1) ... 145s Selecting previously unselected package liburiparser1:amd64. 145s Preparing to unpack .../060-liburiparser1_0.9.8+dfsg-2build1_amd64.deb ... 145s Unpacking liburiparser1:amd64 (0.9.8+dfsg-2build1) ... 145s Selecting previously unselected package libkmlbase1t64:amd64. 145s Preparing to unpack .../061-libkmlbase1t64_1.3.0-13_amd64.deb ... 145s Unpacking libkmlbase1t64:amd64 (1.3.0-13) ... 145s Selecting previously unselected package libkmldom1t64:amd64. 145s Preparing to unpack .../062-libkmldom1t64_1.3.0-13_amd64.deb ... 145s Unpacking libkmldom1t64:amd64 (1.3.0-13) ... 145s Selecting previously unselected package libkmlengine1t64:amd64. 145s Preparing to unpack .../063-libkmlengine1t64_1.3.0-13_amd64.deb ... 145s Unpacking libkmlengine1t64:amd64 (1.3.0-13) ... 145s Selecting previously unselected package libgomp1:amd64. 145s Preparing to unpack .../064-libgomp1_15.2.0-12ubuntu1_amd64.deb ... 145s Unpacking libgomp1:amd64 (15.2.0-12ubuntu1) ... 145s Selecting previously unselected package libmuparser2v5:amd64. 145s Preparing to unpack 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.../070-libltdl7_2.5.4-9_amd64.deb ... 145s Unpacking libltdl7:amd64 (2.5.4-9) ... 145s Selecting previously unselected package libodbc2:amd64. 145s Preparing to unpack .../071-libodbc2_2.3.14-1_amd64.deb ... 145s Unpacking libodbc2:amd64 (2.3.14-1) ... 145s Selecting previously unselected package unixodbc-common. 145s Preparing to unpack .../072-unixodbc-common_2.3.14-1_all.deb ... 145s Unpacking unixodbc-common (2.3.14-1) ... 145s Selecting previously unselected package libodbcinst2:amd64. 145s Preparing to unpack .../073-libodbcinst2_2.3.14-1_amd64.deb ... 145s Unpacking libodbcinst2:amd64 (2.3.14-1) ... 145s Selecting previously unselected package libopenjp2-7:amd64. 145s Preparing to unpack .../074-libopenjp2-7_2.5.4-1_amd64.deb ... 145s Unpacking libopenjp2-7:amd64 (2.5.4-1) ... 145s Selecting previously unselected package libgpgmepp6t64:amd64. 145s Preparing to unpack .../075-libgpgmepp6t64_1.24.2-3ubuntu2_amd64.deb ... 145s Unpacking libgpgmepp6t64:amd64 (1.24.2-3ubuntu2) ... 145s Selecting previously unselected package libpoppler147:amd64. 145s Preparing to unpack .../076-libpoppler147_25.03.0-11.1_amd64.deb ... 145s Unpacking libpoppler147:amd64 (25.03.0-11.1) ... 145s Selecting previously unselected package libpq5:amd64. 145s Preparing to unpack .../077-libpq5_18.1-2build1_amd64.deb ... 145s Unpacking libpq5:amd64 (18.1-2build1) ... 145s Selecting previously unselected package libqhull-r8.0:amd64. 145s Preparing to unpack .../078-libqhull-r8.0_2020.2-8_amd64.deb ... 145s Unpacking libqhull-r8.0:amd64 (2020.2-8) ... 145s Selecting previously unselected package librttopo1:amd64. 145s Preparing to unpack .../079-librttopo1_1.1.0-4_amd64.deb ... 145s Unpacking librttopo1:amd64 (1.1.0-4) ... 145s Selecting previously unselected package libspatialite8t64:amd64. 145s Preparing to unpack .../080-libspatialite8t64_5.1.0-3ubuntu1_amd64.deb ... 145s Unpacking libspatialite8t64:amd64 (5.1.0-3ubuntu1) ... 145s Selecting previously unselected package libxerces-c3.2t64:amd64. 145s Preparing to unpack .../081-libxerces-c3.2t64_3.2.4+debian-1.3build2_amd64.deb ... 145s Unpacking libxerces-c3.2t64:amd64 (3.2.4+debian-1.3build2) ... 145s Selecting previously unselected package libgdal38:amd64. 145s Preparing to unpack .../082-libgdal38_3.12.1+dfsg-1_amd64.deb ... 145s Unpacking libgdal38:amd64 (3.12.1+dfsg-1) ... 145s Selecting previously unselected package libgraphite2-3:amd64. 145s Preparing to unpack .../083-libgraphite2-3_1.3.14-11ubuntu1_amd64.deb ... 145s Unpacking libgraphite2-3:amd64 (1.3.14-11ubuntu1) ... 145s Selecting previously unselected package libharfbuzz0b:amd64. 145s Preparing to unpack .../084-libharfbuzz0b_12.3.2-1_amd64.deb ... 145s Unpacking libharfbuzz0b:amd64 (12.3.2-1) ... 145s Selecting previously unselected package x11-common. 145s Preparing to unpack .../085-x11-common_1%3a7.7+24ubuntu2_all.deb ... 145s Unpacking x11-common (1:7.7+24ubuntu2) ... 145s Selecting previously unselected package libice6:amd64. 145s 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.../123-unzip_6.0-29ubuntu1_amd64.deb ... 146s Unpacking unzip (6.0-29ubuntu1) ... 146s Selecting previously unselected package xdg-utils. 146s Preparing to unpack .../124-xdg-utils_1.2.1-2ubuntu2_all.deb ... 146s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 146s Selecting previously unselected package r-base-core. 146s Preparing to unpack .../125-r-base-core_4.5.2-1ubuntu2_amd64.deb ... 146s Unpacking r-base-core (4.5.2-1ubuntu2) ... 146s Selecting previously unselected package r-cran-abind. 146s Preparing to unpack .../126-r-cran-abind_1.4-8-1build1_all.deb ... 146s Unpacking r-cran-abind (1.4-8-1build1) ... 146s Selecting previously unselected package r-cran-cli. 146s Preparing to unpack .../127-r-cran-cli_3.6.5-1_amd64.deb ... 146s Unpacking r-cran-cli (3.6.5-1) ... 146s Selecting previously unselected package r-cran-generics. 146s Preparing to unpack .../128-r-cran-generics_0.1.4-1_all.deb ... 146s Unpacking r-cran-generics (0.1.4-1) ... 146s Selecting previously unselected package r-cran-glue. 146s Preparing to unpack .../129-r-cran-glue_1.8.0-1_amd64.deb ... 146s Unpacking r-cran-glue (1.8.0-1) ... 146s Selecting previously unselected package r-cran-rlang. 146s Preparing to unpack .../130-r-cran-rlang_1.1.6-1_amd64.deb ... 146s Unpacking r-cran-rlang (1.1.6-1) ... 146s Selecting previously unselected package r-cran-lifecycle. 146s Preparing to unpack .../131-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 146s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 146s Selecting previously unselected package r-cran-magrittr. 146s Preparing to unpack .../132-r-cran-magrittr_2.0.4-1_amd64.deb ... 146s Unpacking r-cran-magrittr (2.0.4-1) ... 146s Selecting previously unselected package r-cran-utf8. 146s Preparing to unpack .../133-r-cran-utf8_1.2.6-1_amd64.deb ... 146s Unpacking r-cran-utf8 (1.2.6-1) ... 146s Selecting previously unselected package r-cran-vctrs. 146s Preparing to unpack .../134-r-cran-vctrs_0.6.5-1_amd64.deb ... 146s Unpacking r-cran-vctrs (0.6.5-1) ... 146s Selecting previously unselected package r-cran-pillar. 146s Preparing to unpack .../135-r-cran-pillar_1.11.1+dfsg-1_all.deb ... 146s Unpacking r-cran-pillar (1.11.1+dfsg-1) ... 146s Selecting previously unselected package r-cran-r6. 147s Preparing to unpack .../136-r-cran-r6_2.6.1-1_all.deb ... 147s Unpacking r-cran-r6 (2.6.1-1) ... 147s Selecting previously unselected package r-cran-fansi. 147s Preparing to unpack .../137-r-cran-fansi_1.0.7-1_amd64.deb ... 147s Unpacking r-cran-fansi (1.0.7-1) ... 147s Selecting previously unselected package r-cran-pkgconfig. 147s Preparing to unpack .../138-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 147s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 147s Selecting previously unselected package r-cran-tibble. 147s Preparing to unpack .../139-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 147s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 147s Selecting previously unselected package r-cran-withr. 147s Preparing to unpack .../140-r-cran-withr_3.0.2+dfsg-1_all.deb ... 147s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 147s Selecting previously unselected package r-cran-tidyselect. 147s Preparing to unpack .../141-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 147s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 147s Selecting previously unselected package r-cran-dplyr. 147s Preparing to unpack .../142-r-cran-dplyr_1.1.4-4_amd64.deb ... 147s Unpacking r-cran-dplyr (1.1.4-4) ... 147s Selecting previously unselected package r-cran-purrr. 147s Preparing to unpack .../143-r-cran-purrr_1.0.4-1_amd64.deb ... 147s Unpacking r-cran-purrr (1.0.4-1) ... 147s Selecting previously unselected package r-cran-mass. 147s Preparing to unpack .../144-r-cran-mass_7.3-65-1_amd64.deb ... 147s Unpacking r-cran-mass (7.3-65-1) ... 147s Selecting previously unselected package r-cran-class. 147s Preparing to unpack .../145-r-cran-class_7.3-23-1_amd64.deb ... 147s Unpacking r-cran-class (7.3-23-1) ... 147s Selecting previously unselected package r-cran-proxy. 147s Preparing to unpack .../146-r-cran-proxy_0.4-27-1_amd64.deb ... 147s Unpacking r-cran-proxy (0.4-27-1) ... 147s Selecting previously unselected package r-cran-e1071. 147s Preparing to unpack .../147-r-cran-e1071_1.7-17-1_amd64.deb ... 147s Unpacking r-cran-e1071 (1.7-17-1) ... 147s Selecting previously unselected package r-cran-kernsmooth. 147s Preparing to unpack .../148-r-cran-kernsmooth_2.23-26-1build1_amd64.deb ... 147s Unpacking r-cran-kernsmooth (2.23-26-1build1) ... 147s Selecting previously unselected package r-cran-classint. 147s Preparing to unpack .../149-r-cran-classint_0.4-11+dfsg-1_amd64.deb ... 147s Unpacking r-cran-classint (0.4-11+dfsg-1) ... 147s Selecting previously unselected package r-cran-dbi. 147s Preparing to unpack .../150-r-cran-dbi_1.2.3-1build1_all.deb ... 147s Unpacking r-cran-dbi (1.2.3-1build1) ... 147s Selecting previously unselected package r-cran-littler. 147s Preparing to unpack .../151-r-cran-littler_0.3.22-1_amd64.deb ... 147s Unpacking r-cran-littler (0.3.22-1) ... 147s Selecting previously unselected package r-cran-pkgkitten. 147s Preparing to unpack .../152-r-cran-pkgkitten_0.2.4-1_all.deb ... 147s Unpacking r-cran-pkgkitten (0.2.4-1) ... 147s Selecting previously unselected package r-cran-rcpp. 147s Preparing to unpack .../153-r-cran-rcpp_1.1.1-2_amd64.deb ... 147s Unpacking r-cran-rcpp (1.1.1-2) ... 147s Selecting previously unselected package r-cran-wk. 147s Preparing to unpack .../154-r-cran-wk_0.9.5-1_amd64.deb ... 147s Unpacking r-cran-wk (0.9.5-1) ... 147s Selecting previously unselected package r-cran-s2. 147s Preparing to unpack .../155-r-cran-s2_1.1.9-1build1_amd64.deb ... 147s Unpacking r-cran-s2 (1.1.9-1build1) ... 147s Selecting previously unselected package r-cran-units. 147s Preparing to unpack .../156-r-cran-units_1.0-0+dfsg-1_amd64.deb ... 147s Unpacking r-cran-units (1.0-0+dfsg-1) ... 147s Selecting previously unselected package r-cran-sf. 147s Preparing to unpack .../157-r-cran-sf_1.0-24+dfsg-1_amd64.deb ... 147s Unpacking r-cran-sf (1.0-24+dfsg-1) ... 147s Selecting previously unselected package r-cran-areal. 147s Preparing to unpack .../158-r-cran-areal_0.1.8+dfsg-2_all.deb ... 147s Unpacking r-cran-areal (0.1.8+dfsg-2) ... 147s Selecting previously unselected package r-cran-sys. 147s Preparing to unpack .../159-r-cran-sys_3.4.3-1_amd64.deb ... 147s Unpacking r-cran-sys (3.4.3-1) ... 147s Selecting previously unselected package r-cran-askpass. 147s Preparing to unpack .../160-r-cran-askpass_1.2.1-1_amd64.deb ... 147s Unpacking r-cran-askpass (1.2.1-1) ... 147s Selecting previously unselected package r-cran-base64enc. 147s Preparing to unpack .../161-r-cran-base64enc_0.1-6-1_amd64.deb ... 147s Unpacking r-cran-base64enc (0.1-6-1) ... 147s Selecting previously unselected package r-cran-bdsmatrix. 147s Preparing to unpack .../162-r-cran-bdsmatrix_1.3-7-1_amd64.deb ... 147s Unpacking r-cran-bdsmatrix (1.3-7-1) ... 147s Selecting previously unselected package r-cran-brio. 147s Preparing to unpack .../163-r-cran-brio_1.1.5-1_amd64.deb ... 147s Unpacking r-cran-brio (1.1.5-1) ... 147s Selecting previously unselected package r-cran-fastmap. 147s Preparing to unpack .../164-r-cran-fastmap_1.2.0-1_amd64.deb ... 147s Unpacking r-cran-fastmap (1.2.0-1) ... 147s Selecting previously unselected package r-cran-cachem. 147s Preparing to unpack .../165-r-cran-cachem_1.1.0-1_amd64.deb ... 147s Unpacking r-cran-cachem (1.1.0-1) ... 147s Selecting previously unselected package r-cran-digest. 147s Preparing to unpack .../166-r-cran-digest_0.6.39-1_amd64.deb ... 147s Unpacking r-cran-digest (0.6.39-1) ... 147s Selecting previously unselected package r-cran-htmltools. 147s Preparing to unpack .../167-r-cran-htmltools_0.5.9-1_amd64.deb ... 147s Unpacking r-cran-htmltools (0.5.9-1) ... 147s Selecting previously unselected package r-cran-jquerylib. 147s Preparing to unpack .../168-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ... 147s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ... 147s Selecting previously unselected package r-cran-jsonlite. 147s Preparing to unpack .../169-r-cran-jsonlite_2.0.0+dfsg-1_amd64.deb ... 147s Unpacking r-cran-jsonlite (2.0.0+dfsg-1) ... 147s Selecting previously unselected package r-cran-memoise. 147s Preparing to unpack .../170-r-cran-memoise_2.0.1-1build1_all.deb ... 147s Unpacking r-cran-memoise (2.0.1-1build1) ... 147s Selecting previously unselected package r-cran-mime. 147s Preparing to unpack .../171-r-cran-mime_0.13-1_amd64.deb ... 147s Unpacking r-cran-mime (0.13-1) ... 147s Selecting previously unselected package r-cran-fs. 147s Preparing to unpack .../172-r-cran-fs_1.6.6+dfsg-1_amd64.deb ... 147s Unpacking r-cran-fs (1.6.6+dfsg-1) ... 147s Selecting previously unselected package r-cran-rappdirs. 147s Preparing to unpack .../173-r-cran-rappdirs_0.3.4-1_amd64.deb ... 147s Unpacking r-cran-rappdirs (0.3.4-1) ... 147s Selecting previously unselected package r-cran-sass. 147s Preparing to unpack .../174-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 147s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 147s Selecting previously unselected package r-cran-bslib. 147s Preparing to unpack .../175-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ... 147s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ... 147s Selecting previously unselected package r-cran-cairo. 147s Preparing to unpack .../176-r-cran-cairo_1.7-0-1_amd64.deb ... 147s Unpacking r-cran-cairo (1.7-0-1) ... 147s Selecting previously unselected package r-cran-ps. 147s Preparing to unpack .../177-r-cran-ps_1.9.1-1_amd64.deb ... 147s Unpacking r-cran-ps (1.9.1-1) ... 147s Selecting previously unselected package r-cran-processx. 147s Preparing to unpack .../178-r-cran-processx_3.8.6-1_amd64.deb ... 147s Unpacking r-cran-processx (3.8.6-1) ... 147s Selecting previously unselected package r-cran-callr. 147s Preparing to unpack .../179-r-cran-callr_3.7.6-1_all.deb ... 147s Unpacking r-cran-callr (3.7.6-1) ... 147s Selecting previously unselected package r-cran-cftime. 147s Preparing to unpack .../180-r-cran-cftime_1.7.2-1_all.deb ... 147s Unpacking r-cran-cftime (1.7.2-1) ... 147s Selecting previously unselected package r-cran-cluster. 147s Preparing to unpack .../181-r-cran-cluster_2.1.8.1-1build1_amd64.deb ... 147s Unpacking r-cran-cluster (2.1.8.1-1build1) ... 147s Selecting previously unselected package r-cran-clue. 147s Preparing to unpack .../182-r-cran-clue_0.3-66-1_amd64.deb ... 147s Unpacking r-cran-clue (0.3-66-1) ... 147s Selecting previously unselected package r-cran-codetools. 147s Preparing to unpack .../183-r-cran-codetools_0.2-20-1build1_all.deb ... 147s Unpacking r-cran-codetools (0.2-20-1build1) ... 147s Selecting previously unselected package r-cran-collapse. 147s Preparing to unpack .../184-r-cran-collapse_2.1.6-1_amd64.deb ... 147s Unpacking r-cran-collapse (2.1.6-1) ... 147s Selecting previously unselected package r-cran-commonmark. 147s Preparing to unpack .../185-r-cran-commonmark_2.0.0-1_amd64.deb ... 147s Unpacking r-cran-commonmark (2.0.0-1) ... 147s Selecting previously unselected package r-cran-lazyeval. 147s Preparing to unpack .../186-r-cran-lazyeval_0.2.2-1build2_amd64.deb ... 147s Unpacking r-cran-lazyeval (0.2.2-1build2) ... 147s Selecting previously unselected package r-cran-rex. 147s Preparing to unpack .../187-r-cran-rex_1.2.1-1build1_all.deb ... 147s Unpacking r-cran-rex (1.2.1-1build1) ... 147s Selecting previously unselected package r-cran-curl. 147s Preparing to unpack .../188-r-cran-curl_7.0.0+dfsg-1_amd64.deb ... 147s Unpacking r-cran-curl (7.0.0+dfsg-1) ... 147s Selecting previously unselected package r-cran-openssl. 147s Preparing to unpack .../189-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 147s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 147s Selecting previously unselected package r-cran-httr. 147s Preparing to unpack .../190-r-cran-httr_1.4.7+dfsg-1_all.deb ... 147s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 147s Selecting previously unselected package r-cran-yaml. 147s Preparing to unpack .../191-r-cran-yaml_2.3.10-1_amd64.deb ... 147s Unpacking r-cran-yaml (2.3.10-1) ... 147s Selecting previously unselected package r-cran-covr. 147s Preparing to unpack .../192-r-cran-covr_3.6.5+dfsg-1_amd64.deb ... 147s Unpacking r-cran-covr (3.6.5+dfsg-1) ... 148s Selecting previously unselected package r-cran-cpp11. 148s Preparing to unpack .../193-r-cran-cpp11_0.5.3-1_all.deb ... 148s Unpacking r-cran-cpp11 (0.5.3-1) ... 148s Selecting previously unselected package r-cran-crayon. 148s Preparing to unpack .../194-r-cran-crayon_1.5.3-1_all.deb ... 148s Unpacking r-cran-crayon (1.5.3-1) ... 148s Selecting previously unselected package r-cran-cubelyr. 148s Preparing to unpack .../195-r-cran-cubelyr_1.0.2-1_all.deb ... 148s Unpacking r-cran-cubelyr (1.0.2-1) ... 148s Selecting previously unselected package r-cran-deldir. 148s Preparing to unpack .../196-r-cran-deldir_2.0-4-1build1_amd64.deb ... 148s Unpacking r-cran-deldir (2.0-4-1build1) ... 148s Selecting previously unselected package r-cran-desc. 148s Preparing to unpack .../197-r-cran-desc_1.4.3-1_all.deb ... 148s Unpacking r-cran-desc (1.4.3-1) ... 148s Selecting previously unselected package r-cran-diffobj. 148s Preparing to unpack .../198-r-cran-diffobj_0.3.6-1_amd64.deb ... 148s Unpacking r-cran-diffobj (0.3.6-1) ... 148s Selecting previously unselected package r-cran-evaluate. 148s Preparing to unpack .../199-r-cran-evaluate_1.0.5-1_all.deb ... 148s Unpacking r-cran-evaluate (1.0.5-1) ... 148s Selecting previously unselected package r-cran-lattice. 148s Preparing to unpack .../200-r-cran-lattice_0.22-7-1_amd64.deb ... 148s Unpacking r-cran-lattice (0.22-7-1) ... 148s Selecting previously unselected package r-cran-sp. 148s Preparing to unpack .../201-r-cran-sp_1%3a2.2-0+dfsg-1_amd64.deb ... 148s Unpacking r-cran-sp (1:2.2-0+dfsg-1) ... 148s Selecting previously unselected package r-cran-terra. 148s Preparing to unpack .../202-r-cran-terra_1.8-70-1build2_amd64.deb ... 148s Unpacking r-cran-terra (1.8-70-1build2) ... 148s Selecting previously unselected package r-cran-raster. 148s Preparing to unpack .../203-r-cran-raster_3.6-32-1_amd64.deb ... 148s Unpacking r-cran-raster (3.6-32-1) ... 148s Selecting previously unselected package r-cran-exactextractr. 148s Preparing to unpack .../204-r-cran-exactextractr_0.10.1-1_amd64.deb ... 148s Unpacking r-cran-exactextractr (0.10.1-1) ... 148s Selecting previously unselected package r-cran-farver. 148s Preparing to unpack .../205-r-cran-farver_2.1.2-1_amd64.deb ... 148s Unpacking r-cran-farver (2.1.2-1) ... 148s Selecting previously unselected package r-cran-fnn. 148s Preparing to unpack .../206-r-cran-fnn_1.1.4.1-1_amd64.deb ... 148s Unpacking r-cran-fnn (1.1.4.1-1) ... 148s Selecting previously unselected package r-cran-fontawesome. 148s Preparing to unpack .../207-r-cran-fontawesome_0.5.3-1_all.deb ... 148s Unpacking r-cran-fontawesome (0.5.3-1) ... 148s Selecting previously unselected package r-cran-formula. 148s Preparing to unpack .../208-r-cran-formula_1.2-5-1_all.deb ... 148s Unpacking r-cran-formula (1.2-5-1) ... 148s Selecting previously unselected package r-cran-globals. 148s Preparing to unpack .../209-r-cran-globals_0.19.0-1_all.deb ... 148s Unpacking r-cran-globals (0.19.0-1) ... 148s Selecting previously unselected package r-cran-listenv. 148s Preparing to unpack .../210-r-cran-listenv_0.10.0+dfsg-1_all.deb ... 148s Unpacking r-cran-listenv (0.10.0+dfsg-1) ... 148s Selecting previously unselected package r-cran-parallelly. 148s Preparing to unpack .../211-r-cran-parallelly_1.46.0-1_amd64.deb ... 148s Unpacking r-cran-parallelly (1.46.0-1) ... 148s Selecting previously unselected package r-cran-future. 148s Preparing to unpack .../212-r-cran-future_1.69.0+dfsg-1_all.deb ... 148s Unpacking r-cran-future (1.69.0+dfsg-1) ... 148s Selecting previously unselected package r-cran-future.apply. 148s Preparing to unpack .../213-r-cran-future.apply_1.20.1+dfsg-1_all.deb ... 148s Unpacking r-cran-future.apply (1.20.1+dfsg-1) ... 148s Selecting previously unselected package r-cran-gtable. 148s Preparing to unpack .../214-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 148s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 148s Selecting previously unselected package r-cran-isoband. 148s Preparing to unpack .../215-r-cran-isoband_0.3.0-1_amd64.deb ... 148s Unpacking r-cran-isoband (0.3.0-1) ... 148s Selecting previously unselected package r-cran-s7. 148s Preparing to unpack .../216-r-cran-s7_0.2.1-1_amd64.deb ... 148s Unpacking r-cran-s7 (0.2.1-1) ... 148s Selecting previously unselected package r-cran-labeling. 148s Preparing to unpack .../217-r-cran-labeling_0.4.3-1_all.deb ... 148s Unpacking r-cran-labeling (0.4.3-1) ... 148s Selecting previously unselected package r-cran-rcolorbrewer. 148s Preparing to unpack .../218-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ... 148s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ... 148s Selecting previously unselected package r-cran-viridislite. 148s Preparing to unpack .../219-r-cran-viridislite_0.4.2-2_all.deb ... 148s Unpacking r-cran-viridislite (0.4.2-2) ... 148s Selecting previously unselected package r-cran-scales. 148s Preparing to unpack .../220-r-cran-scales_1.4.0-1_all.deb ... 148s Unpacking r-cran-scales (1.4.0-1) ... 148s Selecting previously unselected package r-cran-ggplot2. 148s Preparing to unpack .../221-r-cran-ggplot2_4.0.1+dfsg-1_all.deb ... 148s Unpacking r-cran-ggplot2 (4.0.1+dfsg-1) ... 148s Selecting previously unselected package r-cran-tweenr. 148s Preparing to unpack .../222-r-cran-tweenr_2.0.3-1_amd64.deb ... 148s Unpacking r-cran-tweenr (2.0.3-1) ... 148s Selecting previously unselected package r-cran-polyclip. 148s Preparing to unpack .../223-r-cran-polyclip_1.10-7-1_amd64.deb ... 148s Unpacking r-cran-polyclip (1.10-7-1) ... 148s Selecting previously unselected package r-cran-systemfonts. 148s Preparing to unpack .../224-r-cran-systemfonts_1.3.1-1_amd64.deb ... 148s Unpacking r-cran-systemfonts (1.3.1-1) ... 148s Selecting previously unselected package r-cran-ggforce. 148s Preparing to unpack .../225-r-cran-ggforce_0.5.0-1_amd64.deb ... 148s Unpacking r-cran-ggforce (0.5.0-1) ... 148s Selecting previously unselected package r-cran-stringi. 148s Preparing to unpack .../226-r-cran-stringi_1.8.4-1build2_amd64.deb ... 148s Unpacking r-cran-stringi (1.8.4-1build2) ... 148s Selecting previously unselected package r-cran-stringr. 148s Preparing to unpack .../227-r-cran-stringr_1.5.1-1_all.deb ... 148s Unpacking r-cran-stringr (1.5.1-1) ... 148s Selecting previously unselected package r-cran-ggthemes. 148s Preparing to unpack .../228-r-cran-ggthemes_5.2.0-1_all.deb ... 148s Unpacking r-cran-ggthemes (5.2.0-1) ... 148s Selecting previously unselected package r-cran-goftest. 148s Preparing to unpack .../229-r-cran-goftest_1.2-3-1build1_amd64.deb ... 148s Unpacking r-cran-goftest (1.2-3-1build1) ... 148s Selecting previously unselected package r-cran-gridextra. 148s Preparing to unpack .../230-r-cran-gridextra_2.3-3build2_all.deb ... 148s Unpacking r-cran-gridextra (2.3-3build2) ... 148s Selecting previously unselected package r-cran-zoo. 148s Preparing to unpack .../231-r-cran-zoo_1.8-15-1_amd64.deb ... 148s Unpacking r-cran-zoo (1.8-15-1) ... 148s Selecting previously unselected package r-cran-sftime. 148s Preparing to unpack .../232-r-cran-sftime_0.2-0-6_all.deb ... 148s Unpacking r-cran-sftime (0.2-0-6) ... 148s Selecting previously unselected package r-cran-xts. 148s Preparing to unpack .../233-r-cran-xts_0.14.1-1_amd64.deb ... 148s Unpacking r-cran-xts (0.14.1-1) ... 148s Selecting previously unselected package r-cran-intervals. 148s Preparing to unpack .../234-r-cran-intervals_0.15.5-1_amd64.deb ... 148s Unpacking r-cran-intervals (0.15.5-1) ... 148s Selecting previously unselected package r-cran-spacetime. 148s Preparing to unpack .../235-r-cran-spacetime_1.3-3-2_all.deb ... 148s Unpacking r-cran-spacetime (1.3-3-2) ... 148s Selecting previously unselected package r-cran-stars. 148s Preparing to unpack .../236-r-cran-stars_0.6-8-1_all.deb ... 148s Unpacking r-cran-stars (0.6-8-1) ... 148s Selecting previously unselected package r-cran-gstat. 149s Preparing to unpack .../237-r-cran-gstat_2.1-3-2_amd64.deb ... 149s Unpacking r-cran-gstat (2.1-3-2) ... 149s Selecting previously unselected package r-cran-xfun. 149s Preparing to unpack .../238-r-cran-xfun_0.55+dfsg-1_amd64.deb ... 149s Unpacking r-cran-xfun (0.55+dfsg-1) ... 149s Selecting previously unselected package r-cran-highr. 149s Preparing to unpack .../239-r-cran-highr_0.11+dfsg-1_all.deb ... 149s Unpacking r-cran-highr (0.11+dfsg-1) ... 149s Selecting previously unselected package r-cran-later. 149s Preparing to unpack .../240-r-cran-later_1.4.5+dfsg-1_amd64.deb ... 149s Unpacking r-cran-later (1.4.5+dfsg-1) ... 149s Selecting previously unselected package r-cran-promises. 149s Preparing to unpack .../241-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 149s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 149s Selecting previously unselected package r-cran-httpuv. 149s Preparing to unpack .../242-r-cran-httpuv_1.6.16+dfsg-1_amd64.deb ... 149s Unpacking r-cran-httpuv (1.6.16+dfsg-1) ... 149s Selecting previously unselected package libjs-mathjax. 149s Preparing to unpack .../243-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ... 149s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ... 149s Selecting previously unselected package r-cran-knitr. 149s Preparing to unpack .../244-r-cran-knitr_1.51+dfsg-1_all.deb ... 149s Unpacking r-cran-knitr (1.51+dfsg-1) ... 149s Selecting previously unselected package r-cran-lmtest. 149s Preparing to unpack .../245-r-cran-lmtest_0.9.40-1build1_amd64.deb ... 149s Unpacking r-cran-lmtest (0.9.40-1build1) ... 149s Selecting previously unselected package r-cran-lwgeom. 149s Preparing to unpack .../246-r-cran-lwgeom_0.2-14-1_amd64.deb ... 149s Unpacking r-cran-lwgeom (0.2-14-1) ... 149s Selecting previously unselected package r-cran-maps. 149s Preparing to unpack .../247-r-cran-maps_3.4.3-1_amd64.deb ... 149s Unpacking r-cran-maps (3.4.3-1) ... 149s Selecting previously unselected package r-cran-mapdata. 149s Preparing to unpack .../248-r-cran-mapdata_2.3.1-1_amd64.deb ... 149s Unpacking r-cran-mapdata (2.3.1-1) ... 149s Selecting previously unselected package r-cran-matrix. 149s Preparing to unpack .../249-r-cran-matrix_1.7-4-1_amd64.deb ... 149s Unpacking r-cran-matrix (1.7-4-1) ... 149s Selecting previously unselected package r-cran-misctools. 149s Preparing to unpack .../250-r-cran-misctools_0.6-28-1_all.deb ... 149s Unpacking r-cran-misctools (0.6-28-1) ... 149s Selecting previously unselected package r-cran-sandwich. 149s Preparing to unpack .../251-r-cran-sandwich_3.1-1-1build1_all.deb ... 149s Unpacking r-cran-sandwich (3.1-1-1build1) ... 149s Selecting previously unselected package r-cran-maxlik. 149s Preparing to unpack .../252-r-cran-maxlik_1.5-2.2-1_all.deb ... 149s Unpacking r-cran-maxlik (1.5-2.2-1) ... 149s Selecting previously unselected package r-cran-nlme. 149s Preparing to unpack .../253-r-cran-nlme_3.1.168-1_amd64.deb ... 149s Unpacking r-cran-nlme (3.1.168-1) ... 149s Selecting previously unselected package r-cran-mgcv. 149s Preparing to unpack .../254-r-cran-mgcv_1.9-4-1_amd64.deb ... 149s Unpacking r-cran-mgcv (1.9-4-1) ... 149s Selecting previously unselected package r-cran-rnetcdf. 149s Preparing to unpack .../255-r-cran-rnetcdf_2.11-1-1_amd64.deb ... 149s Unpacking r-cran-rnetcdf (2.11-1-1) ... 149s Selecting previously unselected package r-cran-tidyr. 149s Preparing to unpack .../256-r-cran-tidyr_1.3.1-1_amd64.deb ... 149s Unpacking r-cran-tidyr (1.3.1-1) ... 149s Selecting previously unselected package r-cran-ncmeta. 149s Preparing to unpack .../257-r-cran-ncmeta_0.4.0-1_all.deb ... 149s Unpacking r-cran-ncmeta (0.4.0-1) ... 149s Selecting previously unselected package r-cran-ncdfgeom. 149s Preparing to unpack .../258-r-cran-ncdfgeom_1.1.6+dfsg-1_all.deb ... 149s Unpacking r-cran-ncdfgeom (1.1.6+dfsg-1) ... 149s Selecting previously unselected package r-cran-pbapply. 149s Preparing to unpack .../259-r-cran-pbapply_1.7-2-1_all.deb ... 149s Unpacking r-cran-pbapply (1.7-2-1) ... 149s Selecting previously unselected package r-cran-pcict. 149s Preparing to unpack .../260-r-cran-pcict_0.5-4.4-1_amd64.deb ... 149s Unpacking r-cran-pcict (0.5-4.4-1) ... 149s Selecting previously unselected package r-cran-pkgbuild. 149s Preparing to unpack .../261-r-cran-pkgbuild_1.4.8-1_all.deb ... 149s Unpacking r-cran-pkgbuild (1.4.8-1) ... 149s Selecting previously unselected package r-cran-rprojroot. 149s Preparing to unpack .../262-r-cran-rprojroot_2.1.1-1_all.deb ... 149s Unpacking r-cran-rprojroot (2.1.1-1) ... 149s Selecting previously unselected package r-cran-pkgload. 149s Preparing to unpack .../263-r-cran-pkgload_1.4.1-1_all.deb ... 149s Unpacking r-cran-pkgload (1.4.1-1) ... 149s Selecting previously unselected package r-cran-rbibutils. 149s Preparing to unpack .../264-r-cran-rbibutils_2.4.1-1_amd64.deb ... 149s Unpacking r-cran-rbibutils (2.4.1-1) ... 149s Selecting previously unselected package r-cran-rdpack. 149s Preparing to unpack .../265-r-cran-rdpack_2.6.5-1_all.deb ... 149s Unpacking r-cran-rdpack (2.6.5-1) ... 149s Selecting previously unselected package r-cran-plm. 149s Preparing to unpack .../266-r-cran-plm_2.6-7-1_all.deb ... 149s Unpacking r-cran-plm (2.6-7-1) ... 149s Selecting previously unselected package r-cran-praise. 150s Preparing to unpack .../267-r-cran-praise_1.0.0-4build2_all.deb ... 150s Unpacking r-cran-praise (1.0.0-4build2) ... 150s Selecting previously unselected package r-cran-randomforest. 150s Preparing to unpack .../268-r-cran-randomforest_4.7-1.2-1_amd64.deb ... 150s Unpacking r-cran-randomforest (4.7-1.2-1) ... 150s Selecting previously unselected package r-cran-tinytex. 150s Preparing to unpack .../269-r-cran-tinytex_0.58-1_all.deb ... 150s Unpacking r-cran-tinytex (0.58-1) ... 150s Selecting previously unselected package libjs-modernizr. 150s Preparing to unpack .../270-libjs-modernizr_3.13.0-0.1build1_all.deb ... 150s Unpacking libjs-modernizr (3.13.0-0.1build1) ... 150s Selecting previously unselected package r-cran-xtable. 150s Preparing to unpack .../271-r-cran-xtable_1%3a1.8-4-2build1_all.deb ... 150s Unpacking r-cran-xtable (1:1.8-4-2build1) ... 150s Selecting previously unselected package r-cran-sourcetools. 150s Preparing to unpack .../272-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 150s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 150s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 150s Preparing to unpack .../273-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 150s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 150s Selecting previously unselected package r-cran-shiny. 150s Preparing to unpack .../274-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 150s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 150s Selecting previously unselected package r-cran-rmarkdown. 150s Preparing to unpack .../275-r-cran-rmarkdown_2.30+dfsg-1_all.deb ... 150s Unpacking r-cran-rmarkdown (2.30+dfsg-1) ... 150s Selecting previously unselected package r-cran-survival. 150s Preparing to unpack .../276-r-cran-survival_3.8-6-1_amd64.deb ... 150s Unpacking r-cran-survival (3.8-6-1) ... 150s Selecting previously unselected package r-cran-rpart. 150s Preparing to unpack .../277-r-cran-rpart_4.1.24-1build1_amd64.deb ... 150s Unpacking r-cran-rpart (4.1.24-1build1) ... 150s Selecting previously unselected package r-cran-spatstat.utils. 150s Preparing to unpack .../278-r-cran-spatstat.utils_3.1-3-1_amd64.deb ... 150s Unpacking r-cran-spatstat.utils (3.1-3-1) ... 150s Selecting previously unselected package r-cran-spatstat.data. 150s Preparing to unpack .../279-r-cran-spatstat.data_3.1-6-1_all.deb ... 150s Unpacking r-cran-spatstat.data (3.1-6-1) ... 150s Selecting previously unselected package r-cran-spatstat.univar. 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(1.8-70-1build2) ... 153s Setting up r-cran-sf (1.0-24+dfsg-1) ... 153s Setting up r-cran-stars (0.6-8-1) ... 153s Setting up r-cran-sftime (0.2-0-6) ... 153s Setting up r-cran-areal (0.1.8+dfsg-2) ... 153s Setting up r-cran-gstat (2.1-3-2) ... 153s Setting up r-cran-raster (3.6-32-1) ... 153s Setting up r-cran-lwgeom (0.2-14-1) ... 153s Setting up r-cran-exactextractr (0.10.1-1) ... 153s Setting up r-cran-ncdfgeom (1.1.6+dfsg-1) ... 153s Processing triggers for libc-bin (2.42-2ubuntu4) ... 153s Processing triggers for man-db (2.13.1-1) ... 154s Processing triggers for install-info (7.2-5) ... 155s autopkgtest [19:39:30]: test environment configured for cross building 155s autopkgtest [19:39:30]: test run-unit-test: [----------------------- 155s BEGIN TEST aggregate.R 155s 155s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 155s Copyright (C) 2025 The R Foundation for Statistical Computing 155s Platform: x86_64-pc-linux-gnu 155s 155s R is free software and comes with ABSOLUTELY NO WARRANTY. 155s You are welcome to redistribute it under certain conditions. 155s Type 'license()' or 'licence()' for distribution details. 155s 155s R is a collaborative project with many contributors. 155s Type 'contributors()' for more information and 155s 'citation()' on how to cite R or R packages in publications. 155s 155s Type 'demo()' for some demos, 'help()' for on-line help, or 155s 'help.start()' for an HTML browser interface to help. 155s Type 'q()' to quit R. 155s 155s > ## IGNORE_RDIFF_BEGIN 155s > library(stars) 155s Loading required package: abind 155s Loading required package: sf 155s Linking to GEOS 3.14.1, GDAL 3.12.1, PROJ 9.7.1; sf_use_s2() is TRUE 155s > ## IGNORE_RDIFF_END 155s > 155s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 155s + data(air) # this loads several datasets in .GlobalEnv 155s + dim(air) 155s + d = st_dimensions(station = st_set_crs(st_as_sfc(stations), 4326), time = dates) 155s + 155s + blocks = st_make_grid(st_as_sfc("POLYGON ((5.871619 47.26986, 15.03811 47.26986, 15.03811 55.05653, 5.871619 55.05653, 5.871619 47.26986))", crs = 4326), 155s + n = c(3,3)) 155s + 155s + print(aq <- st_as_stars(list(PM10 = air), dimensions = d)) 155s + print(a <- aggregate(aq, blocks, mean, na.rm = TRUE)) 155s + } 156s stars object with 2 dimensions and 1 attribute 156s attribute(s): 156s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 156s PM10 0 9.921 14.792 17.69728 21.992 274.333 157659 156s dimension(s): 156s from to offset delta refsys point 156s station 1 70 NA NA WGS 84 TRUE 156s time 1 4383 1998-01-01 1 days Date FALSE 156s values 156s station POINT (9.585911 53.67057),...,POINT (9.446661 49.24068) 156s time NULL 156s stars object with 2 dimensions and 1 attribute 156s attribute(s): 156s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 156s PM10 1 11 15.57425 18.1715 22.17197 183.271 8429 156s dimension(s): 156s from to offset delta refsys point 156s geometry 1 9 NA NA WGS 84 FALSE 156s time 1 4383 1998-01-01 1 days Date FALSE 156s values 156s geometry POLYGON ((5.871619 47.269...,...,POLYGON ((11.98261 52.460... 156s time NULL 156s > 156s > # adapted from ?read_stars: 156s > m = array(1:720, dim = c(x = 10, y = 12, t = 6)) # named dim 156s > st = st_as_stars(m) 156s > attr(st, "dimensions")$y$delta = -1 156s > attr(st, "dimensions")$y$offset = 12 156s > tm = as.Date("2019-02-19") + 1:6 156s > st = st_set_crs(st_set_dimensions(st, 3, values = tm), 4326) 156s > 156s > tmp = tempfile(fileext = ".tif") 156s > write_stars(st, tmp) 156s > 156s > (red <- setNames(read_stars(tmp, RasterIO = list(nXOff = 1, nYOff = 1, nXsize = 10, nYSize = 12, 156s + nBufXSize = 2, nBufYSize = 2)), "foo")) 156s stars object with 3 dimensions and 1 attribute 156s attribute(s): 156s Min. 1st Qu. Median Mean 3rd Qu. Max. 156s foo 33 199.25 365.5 365.5 531.75 698 156s dimension(s): 156s from to offset delta refsys point x/y 156s x 1 2 0 5 WGS 84 FALSE [x] 156s y 1 2 12 -6 WGS 84 FALSE [y] 156s band 1 6 NA NA NA NA 156s > 156s > sfc = st_set_crs(st_as_sfc(red, as_points = FALSE), st_crs(st)) 156s > (a = aggregate(st, st_sf(a = 1, geom = sfc), mean)) 156s stars object with 2 dimensions and 1 attribute 156s attribute(s): 156s Min. 1st Qu. Median Mean 3rd Qu. Max. 156s A1 28 194.25 360.5 360.5 526.75 693 156s dimension(s): 156s from to offset delta refsys point 156s geom 1 4 NA NA WGS 84 FALSE 156s t 1 6 2019-02-20 1 days Date FALSE 156s values 156s geom POLYGON ((0 12, 5 12, 5 6...,...,POLYGON ((5 6, 10 6, 10 0... 156s t NULL 156s > (a = aggregate(st, sfc, mean)) 156s stars object with 2 dimensions and 1 attribute 156s attribute(s): 156s Min. 1st Qu. Median Mean 3rd Qu. Max. 156s A1 28 194.25 360.5 360.5 526.75 693 156s dimension(s): 156s from to offset delta refsys point 156s geometry 1 4 NA NA WGS 84 FALSE 156s t 1 6 2019-02-20 1 days Date FALSE 156s values 156s geometry POLYGON ((0 12, 5 12, 5 6...,...,POLYGON ((5 6, 10 6, 10 0... 156s t NULL 156s > 156s > tm0 = as.Date("2019-02-19") + -1:8 156s > (a = aggregate(st, tm0, mean, na.rm = TRUE)) 156s stars object with 3 dimensions and 1 attribute 156s attribute(s): 156s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 156s A1 1 180.75 360.5 360.5 540.25 720 480 156s dimension(s): 156s from to offset delta refsys point x/y 156s time 1 10 2019-02-18 1 days Date NA 156s x 1 10 0 1 WGS 84 FALSE [x] 156s y 1 12 12 -1 WGS 84 FALSE [y] 156s > (a = aggregate(st, "days", mean, na.rm = TRUE)) 156s stars object with 3 dimensions and 1 attribute 156s attribute(s): 156s Min. 1st Qu. Median Mean 3rd Qu. Max. 156s A1 1 180.75 360.5 360.5 540.25 720 156s dimension(s): 156s from to offset delta refsys point x/y 156s time 1 6 2019-02-20 1 days Date NA 156s x 1 10 0 1 WGS 84 FALSE [x] 156s y 1 12 12 -1 WGS 84 FALSE [y] 156s > yd = function(x) as.POSIXlt(x)$yday 156s > (a = aggregate(st, yd, mean, na.rm = TRUE)) 156s stars object with 3 dimensions and 1 attribute 156s attribute(s): 156s Min. 1st Qu. Median Mean 3rd Qu. Max. 156s A1 1 180.75 360.5 360.5 540.25 720 156s dimension(s): 156s from to offset delta refsys point values x/y 156s geometry 1 6 NA NA NA NA 50,...,55 156s x 1 10 0 1 WGS 84 FALSE NULL [x] 156s y 1 12 12 -1 WGS 84 FALSE NULL [y] 156s > 156s > # with "by" geometry not overlapping x 156s > pt = st_point(c(-10,-10)) 156s > (sfc = c(sfc, st_sfc(pt, crs = st_crs(sfc)))) 156s Geometry set for 5 features 156s Geometry type: GEOMETRY 156s Dimension: XY 156s Bounding box: xmin: -10 ymin: -10 xmax: 10 ymax: 12 156s Geodetic CRS: WGS 84 156s POLYGON ((0 12, 5 12, 5 6, 0 6, 0 12)) 156s POLYGON ((5 12, 10 12, 10 6, 5 6, 5 12)) 156s POLYGON ((0 6, 5 6, 5 0, 0 0, 0 6)) 156s POLYGON ((5 6, 10 6, 10 0, 5 0, 5 6)) 156s > (a = aggregate(st, sfc, mean)) 156s POINT (-10 -10) 156s stars object with 2 dimensions and 1 attribute 156s attribute(s): 156s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 156s A1 28 194.25 360.5 360.5 526.75 693 6 156s dimension(s): 156s from to offset delta refsys point 156s geometry 1 5 NA NA WGS 84 FALSE 156s t 1 6 2019-02-20 1 days Date FALSE 156s values 156s geometry POLYGON ((0 12, 5 12, 5 6...,...,POINT (-10 -10) 156s t NULL 156s > (a = aggregate(st, st, mean)) 156s stars object with 2 dimensions and 1 attribute 156s attribute(s): 156s Min. 1st Qu. Median Mean 3rd Qu. Max. 156s A1 1 180.75 360.5 360.5 540.25 720 156s dimension(s): 156s from to offset delta refsys point 156s geometry 1 120 NA NA WGS 84 FALSE 156s t 1 6 2019-02-20 1 days Date FALSE 156s values 156s geometry POLYGON ((0 12, 1 12, 1 1...,...,POLYGON ((9 1, 10 1, 10 0... 156s t NULL 156s > 156s BEGIN TEST align.R 156s 156s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 156s Copyright (C) 2025 The R Foundation for Statistical Computing 156s Platform: x86_64-pc-linux-gnu 156s 156s R is free software and comes with ABSOLUTELY NO WARRANTY. 156s You are welcome to redistribute it under certain conditions. 156s Type 'license()' or 'licence()' for distribution details. 156s 156s R is a collaborative project with many contributors. 156s Type 'contributors()' for more information and 156s 'citation()' on how to cite R or R packages in publications. 156s 156s Type 'demo()' for some demos, 'help()' for on-line help, or 156s 'help.start()' for an HTML browser interface to help. 156s Type 'q()' to quit R. 156s 156s > suppressPackageStartupMessages(library(stars)) 156s > set.seed(1331) 156s > st_sample(st_as_sfc(st_bbox(L7_ETMs)), 1) 156s Geometry set for 1 feature 156s Geometry type: POINT 156s Dimension: XY 156s Bounding box: xmin: 291430.8 ymin: 9111430 xmax: 291430.8 ymax: 9111430 156s Projected CRS: SIRGAS 2000 / UTM zone 25S 156s > b = st_buffer(st_sample(st_as_sfc(st_bbox(L7_ETMs)), 1), 335) 156s POINT (291430.8 9111430) 156s > bba = stars:::st_align(st_bbox(b), st_dimensions(L7_ETMs)) 156s > 156s > plot(L7_ETMs[,,,1], extent = st_buffer(b, 20), reset = FALSE, key.pos = NULL) 156s > plot(b, add = TRUE, col = NA, border = 'red') 156s > plot(st_as_sfc(st_bbox(b)), col = NA, border = 'red', add = TRUE) 156s > plot(st_as_sfc(bba), col = NA, border = 'blue', add = TRUE) 156s > st_bbox(b) 156s xmin ymin xmax ymax 156s 297116.8 9119404.1 297786.8 9120074.1 156s > bba 156s xmin ymin xmax ymax 156s 297098.3 9119392.8 297810.8 9120076.8 156s > 156s > plot(L7_ETMs[,,,1], reset = FALSE, key.pos = NULL) 156s > plot(b, col = 'red', add = TRUE) 156s > plot(st_as_sfc(bba), col = NA, border = 'blue', add = TRUE) 156s > 156s > b0 = st_buffer(b, -100) 156s > L7 = st_as_stars(L7_ETMs)[b0][,,,1] |> st_normalize() 156s > bbb = stars:::st_align(st_bbox(b), st_dimensions(L7)) 156s > plot(L7, extent = st_buffer(b, 120), reset = FALSE, key.pos = NULL) 156s > plot(st_as_sfc(st_bbox(L7)), col = NA, border = 'black', add = TRUE) 156s > plot(st_as_sfc(bbb), col = NA, border = 'blue', add = TRUE) 156s > plot(b, col = NA, border = 'red', add = TRUE) 156s > 156s > all.equal(bbb, bba) 156s [1] TRUE 156s > 157s BEGIN TEST area.R 157s 157s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 157s Copyright (C) 2025 The R Foundation for Statistical Computing 157s Platform: x86_64-pc-linux-gnu 157s 157s R is free software and comes with ABSOLUTELY NO WARRANTY. 157s You are welcome to redistribute it under certain conditions. 157s Type 'license()' or 'licence()' for distribution details. 157s 157s R is a collaborative project with many contributors. 157s Type 'contributors()' for more information and 157s 'citation()' on how to cite R or R packages in publications. 157s 157s Type 'demo()' for some demos, 'help()' for on-line help, or 157s 'help.start()' for an HTML browser interface to help. 157s Type 'q()' to quit R. 157s 157s > suppressPackageStartupMessages(library(stars)) 157s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 157s > x = read_stars(tif) 157s > (a = st_area(x[,1:5,1:5])) 157s stars object with 2 dimensions and 1 attribute 157s attribute(s): 157s Min. 1st Qu. Median Mean 3rd Qu. Max. 157s area [m^2] 812.25 812.25 812.25 812.25 812.25 812.25 157s dimension(s): 157s from to offset delta refsys point x/y 157s x 1 5 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 157s y 1 5 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 157s > 157s > m = matrix(1:20, nrow = 5, ncol = 4) 157s > x = c(0, 0.5, 1, 2, 4, 5) # 6 numbers: boundaries! 157s > y = c(0.3, 0.5, 1, 2, 2.2) # 5 numbers: boundaries! 157s > (r = st_as_stars(list(m = m), dimensions = st_dimensions(x = x, y = y))) 157s stars object with 2 dimensions and 1 attribute 157s attribute(s): 157s Min. 1st Qu. Median Mean 3rd Qu. Max. 157s m 1 5.75 10.5 10.5 15.25 20 157s dimension(s): 157s Missing coordinate reference system: assuming Cartesian coordinates 157s from to point values x/y 157s x 1 5 FALSE [0,0.5),...,[4,5) [x] 157s y 1 4 FALSE [0.3,0.5),...,[2,2.2) [y] 157s > # image(r, axes = TRUE, col = grey((1:20)/20)) 157s > (a = st_area(r)) 157s stars object with 2 dimensions and 1 attribute 157s attribute(s): 157s Min. 1st Qu. Median Mean 3rd Qu. Max. 157s area 0.1 0.2 0.325 0.475 0.5 2 157s dimension(s): 157s from to point values x/y 157s x 1 5 FALSE [0,0.5),...,[4,5) [x] 157s y 1 4 FALSE [0.3,0.5),...,[2,2.2) [y] 157s > #plot(a, axes = TRUE) 157s > 157s > s5p = system.file("sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", package = "starsdata") 157s > if (s5p != "") { 157s + nit.c = read_stars(s5p, sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 157s + curvilinear = c("//PRODUCT/longitude", "//PRODUCT/latitude"), driver = NULL) 157s + if (inherits(nit.c[[1]], "units")) 157s + nit.c[[1]] = units::drop_units(nit.c[[1]]) 157s + nit.c[[1]][nit.c[[1]] > 9e+36] = NA 157s + st_crs(nit.c) = 4326 157s + print((a <- st_area(nit.c[,1:5,1:5]))) 157s + # plot(a, axes = TRUE, border = NA) 157s + } 157s > 157s BEGIN TEST crop.R 157s 157s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 157s Copyright (C) 2025 The R Foundation for Statistical Computing 157s Platform: x86_64-pc-linux-gnu 157s 157s R is free software and comes with ABSOLUTELY NO WARRANTY. 157s You are welcome to redistribute it under certain conditions. 157s Type 'license()' or 'licence()' for distribution details. 157s 157s R is a collaborative project with many contributors. 157s Type 'contributors()' for more information and 157s 'citation()' on how to cite R or R packages in publications. 157s 157s Type 'demo()' for some demos, 'help()' for on-line help, or 157s 'help.start()' for an HTML browser interface to help. 157s Type 'q()' to quit R. 157s 157s > suppressPackageStartupMessages(library(stars)) 157s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 157s > x = read_stars(tif) 157s > xy = structure(list(x = c(293253.999046018, 296400.196497684), y = c(9113801.64775462, 157s + 9111328.49619133)), .Names = c("x", "y")) 157s > pts = st_as_sf(data.frame(do.call(cbind, xy)), coords = c("x", "y"), crs = st_crs(x)) 157s > image(x, axes = TRUE) 157s > plot(st_as_sfc(st_bbox(pts)), col = NA, add = TRUE) 157s > 157s > bb = st_bbox(pts) 157s > (xx = x[bb]) 157s stars object with 3 dimensions and 1 attribute 157s attribute(s): 157s Min. 1st Qu. Median Mean 3rd Qu. Max. 157s L7_ETMs.tif 3 56 73 70.87303 89 255 157s dimension(s): 157s from to offset delta refsys point x/y 157s x 158 268 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 157s y 245 331 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 157s band 1 6 NA NA NA NA 157s > image(xx) 157s > plot(st_as_sfc(bb), add = TRUE, col = NA) 157s > st_contains(st_as_sfc(st_bbox(xx)), st_as_sfc(st_bbox(pts))) 157s Sparse geometry binary predicate list of length 1, where the predicate 157s was `contains' 157s 1: 1 157s > 157s > image(x) 158s > pt = st_point(c(x = 290462.103109179, y = 9114202.32594085)) 158s > buf = st_buffer(st_sfc(pt, crs = st_crs(x)), 1500) 158s > plot(buf, add = TRUE) 158s > 158s > buf = st_sfc(st_polygon(list(st_buffer(pt, 1500)[[1]], st_buffer(pt, 1000)[[1]])), 158s + crs = st_crs(x)) 158s > image(x[buf]) 158s > plot(buf, add = TRUE, col = NA) 158s > image(x[buf,crop=FALSE]) 158s > plot(buf, add = TRUE, col = NA) 158s > 158s > plot(x, rgb = 1:3) 158s > 158s > # #638: 158s > l = st_as_stars(L7_ETMs) 158s > st_bbox(l) |> st_as_sfc() -> bb 158s > (bb + 1e6) |> st_set_crs(st_crs(l)) -> b 158s > st_crop(l, b) 158s stars object with 3 dimensions and 1 attribute 158s attribute(s): 158s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 158s L7_ETMs NA NA NA NaN NA NA 737088 158s dimension(s): 158s Warning message: 158s In st_crop.stars(l, b) : st_crop: bounding boxes of x and y do not overlap 158s from to offset delta refsys point x/y 158s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 158s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 158s band 1 6 NA NA NA NA 158s > st_intersects(b, st_as_sfc(st_bbox(l))) |> as.matrix() 158s [,1] 158s [1,] FALSE 158s > (bb - 1e6) |> st_set_crs(st_crs(l)) -> b 158s > st_crop(l, b) 159s stars object with 3 dimensions and 1 attribute 159s attribute(s): 159s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 159s L7_ETMs NA NA NA NaN NA NA 737088 159s dimension(s): 159s Warning message: 159s In st_crop.stars(l, b) : st_crop: bounding boxes of x and y do not overlap 159s from to offset delta refsys point x/y 159s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 159s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 159s band 1 6 NA NA NA NA 159s > 159s BEGIN TEST curvilinear.R 159s 159s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 159s Copyright (C) 2025 The R Foundation for Statistical Computing 159s Platform: x86_64-pc-linux-gnu 159s 159s R is free software and comes with ABSOLUTELY NO WARRANTY. 159s You are welcome to redistribute it under certain conditions. 159s Type 'license()' or 'licence()' for distribution details. 159s 159s R is a collaborative project with many contributors. 159s Type 'contributors()' for more information and 159s 'citation()' on how to cite R or R packages in publications. 159s 159s Type 'demo()' for some demos, 'help()' for on-line help, or 159s 'help.start()' for an HTML browser interface to help. 159s Type 'q()' to quit R. 159s 159s > suppressPackageStartupMessages(library(stars)) 159s > 159s > s5p = system.file("sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", package = "starsdata") 159s > if (s5p != "") { 159s + 159s + lat_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/latitude") 159s + lon_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/longitude") 159s + nit_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column") 159s + lat = read_stars(lat_ds) 159s + lon = read_stars(lon_ds) 159s + nit = read_stars(nit_ds) 159s + nit[[1]][nit[[1]] > 9e+36] = NA 159s + 159s + ll = setNames(c(lon, lat), c("x", "y")) 159s + nit.c0 = st_as_stars(nit, curvilinear = ll) 159s + 159s + # more direct method: 159s + nit.c = read_stars(s5p, sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 159s + curvilinear = c("//PRODUCT/longitude", "//PRODUCT/latitude"), driver = NULL) 159s + if (inherits(nit.c[[1]], "units")) 159s + nit.c[[1]] = units::drop_units(nit.c[[1]]) 159s + nit.c[[1]][nit.c[[1]] > 9e+36] = NA 159s + all.equal(nit.c0, nit.c) 159s + st_crs(nit.c) = 4326 159s + print(nit.c) 159s + 159s + if (FALSE && capabilities()["png"]) { 159s + png("nit1.png", 800, 800) 159s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = TRUE, pch = 16) 159s + maps::map('world', add = TRUE, col = 'red') 159s + dev.off() 159s + 159s + png("nit2.png", 800, 800) 159s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = FALSE, border = NA) 159s + maps::map('world', add = TRUE, col = 'red') 159s + dev.off() 159s + 159s + nit.c = stars:::st_downsample(nit.c, 8) 159s + print(nit.c) 159s + 159s + png("nit3.png", 800, 800) 159s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = TRUE, pch = 16) 159s + maps::map('world', add = TRUE, col = 'red') 159s + dev.off() 159s + 159s + png("nit4.png", 800, 800) 159s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = FALSE, border = NA) 159s + maps::map('world', add = TRUE, col = 'red') 159s + dev.off() 159s + } 159s + 159s + } 159s > 159s BEGIN TEST datasets.R 159s 159s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 159s Copyright (C) 2025 The R Foundation for Statistical Computing 159s Platform: x86_64-pc-linux-gnu 159s 159s R is free software and comes with ABSOLUTELY NO WARRANTY. 159s You are welcome to redistribute it under certain conditions. 159s Type 'license()' or 'licence()' for distribution details. 159s 159s R is a collaborative project with many contributors. 159s Type 'contributors()' for more information and 159s 'citation()' on how to cite R or R packages in publications. 159s 159s Type 'demo()' for some demos, 'help()' for on-line help, or 159s 'help.start()' for an HTML browser interface to help. 159s Type 'q()' to quit R. 159s 159s > suppressPackageStartupMessages(library(stars)) 160s > bcsd_obs 160s stars_proxy object with 2 attributes in 2 file(s): 160s $foo 160s [1] "[...]/bcsd_obs_1999.nc:pr" 160s 160s $bar 160s [1] "[...]/bcsd_obs_1999.nc:tas" 160s 160s dimension(s): 160s from to offset delta refsys values x/y 160s x 1 81 -85 0.125 NA NULL [x] 160s y 1 33 37.12 -0.125 NA NULL [y] 160s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 160s > L7_ETMs 160s stars_proxy object with 1 attribute in 1 file(s): 160s $L7_ETMs 160s [1] "[...]/L7_ETMs.tif" 160s 160s dimension(s): 160s from to offset delta refsys point x/y 160s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 160s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 160s band 1 6 NA NA NA NA 160s > if (require(starsdata, quietly = TRUE)) { 160s + print(stars_sentinel2) 160s + } 160s > 160s BEGIN TEST dimensions.R 160s 160s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 160s Copyright (C) 2025 The R Foundation for Statistical Computing 160s Platform: x86_64-pc-linux-gnu 160s 160s R is free software and comes with ABSOLUTELY NO WARRANTY. 160s You are welcome to redistribute it under certain conditions. 160s Type 'license()' or 'licence()' for distribution details. 160s 160s R is a collaborative project with many contributors. 160s Type 'contributors()' for more information and 160s 'citation()' on how to cite R or R packages in publications. 160s 160s Type 'demo()' for some demos, 'help()' for on-line help, or 160s 'help.start()' for an HTML browser interface to help. 160s Type 'q()' to quit R. 160s 160s > # https://github.com/r-spatial/stars/issues/295 160s > suppressPackageStartupMessages(library(stars)) 160s > raw <- read_stars(system.file("nc/bcsd_obs_1999.nc", package = "stars")) 160s pr, tas, 160s > foo <- function(x, idx) stats::lowess(idx, x)$y 160s > 160s > timeline <- st_get_dimension_values(raw, "time") 160s > smooth = st_apply(raw, 160s + MARGIN = c("x", "y"), 160s + FUN = foo, 160s + idx = st_get_dimension_values(raw, "time") 160s + ) 160s > 160s > st_set_dimensions(smooth, 160s + which = "foo", 160s + values = st_get_dimension_values(raw, "time"), 160s + names = "time" 160s + ) 160s stars object with 3 dimensions and 2 attributes 160s attribute(s): 160s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 160s pr 16.133519 70.371665 84.55774 87.72969 101.94830 278.6427 7116 160s tas -2.354958 9.632157 15.32671 14.61650 19.99331 24.7976 7116 160s dimension(s): 160s from to offset delta refsys values x/y 160s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 160s x 1 81 -85 0.125 NA NULL [x] 160s y 1 33 37.12 -0.125 NA NULL [y] 160s > 160s > raw %>% 160s + st_apply(MARGIN = c("x", "y"), FUN = foo, idx = timeline) %>% 160s + st_set_dimensions("foo", st_dimensions(raw)["time"]) 160s stars object with 3 dimensions and 2 attributes 160s attribute(s): 160s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 160s pr 16.133519 70.371665 84.55774 87.72969 101.94830 278.6427 7116 160s tas -2.354958 9.632157 15.32671 14.61650 19.99331 24.7976 7116 160s dimension(s): 160s from to offset delta refsys values x/y 160s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 160s x 1 81 -85 0.125 NA NULL [x] 160s y 1 33 37.12 -0.125 NA NULL [y] 160s > 160s BEGIN TEST downsample.R 160s 160s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 160s Copyright (C) 2025 The R Foundation for Statistical Computing 160s Platform: x86_64-pc-linux-gnu 160s 160s R is free software and comes with ABSOLUTELY NO WARRANTY. 160s You are welcome to redistribute it under certain conditions. 160s Type 'license()' or 'licence()' for distribution details. 160s 160s R is a collaborative project with many contributors. 160s Type 'contributors()' for more information and 160s 'citation()' on how to cite R or R packages in publications. 160s 160s Type 'demo()' for some demos, 'help()' for on-line help, or 160s 'help.start()' for an HTML browser interface to help. 160s Type 'q()' to quit R. 160s 160s > suppressPackageStartupMessages(library(stars)) 161s > m = matrix(1:121, 11, 11) 161s > m 161s [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] 161s [1,] 1 12 23 34 45 56 67 78 89 100 111 161s [2,] 2 13 24 35 46 57 68 79 90 101 112 161s [3,] 3 14 25 36 47 58 69 80 91 102 113 161s [4,] 4 15 26 37 48 59 70 81 92 103 114 161s [5,] 5 16 27 38 49 60 71 82 93 104 115 161s [6,] 6 17 28 39 50 61 72 83 94 105 116 161s [7,] 7 18 29 40 51 62 73 84 95 106 117 161s [8,] 8 19 30 41 52 63 74 85 96 107 118 161s [9,] 9 20 31 42 53 64 75 86 97 108 119 161s [10,] 10 21 32 43 54 65 76 87 98 109 120 161s [11,] 11 22 33 44 55 66 77 88 99 110 121 161s > s = st_as_stars(m) 161s > st_downsample(s, 1) 161s stars object with 2 dimensions and 1 attribute 161s attribute(s): 161s Min. 1st Qu. Median Mean 3rd Qu. Max. 161s A1 1 28.5 61 61 93.5 121 161s dimension(s): 161s from to offset delta point x/y 161s X1 1 6 0 2 FALSE [x] 161s X2 1 6 0 2 FALSE [y] 161s > st_downsample(s, 1)[[1]] 161s [,1] [,2] [,3] [,4] [,5] [,6] 161s [1,] 1 23 45 67 89 111 161s [2,] 3 25 47 69 91 113 161s [3,] 5 27 49 71 93 115 161s [4,] 7 29 51 73 95 117 161s [5,] 9 31 53 75 97 119 161s [6,] 11 33 55 77 99 121 161s > st_downsample(s, 1, offset = 1) 161s stars object with 2 dimensions and 1 attribute 161s attribute(s): 161s Min. 1st Qu. Median Mean 3rd Qu. Max. 161s A1 13 37 61 61 85 109 161s dimension(s): 161s from to offset delta point x/y 161s X1 1 5 1 2 FALSE [x] 161s X2 1 5 1 2 FALSE [y] 161s > st_downsample(s, 1, offset = 1)[[1]] 161s [,1] [,2] [,3] [,4] [,5] 161s [1,] 13 35 57 79 101 161s [2,] 15 37 59 81 103 161s [3,] 17 39 61 83 105 161s [4,] 19 41 63 85 107 161s [5,] 21 43 65 87 109 161s > st_downsample(s, 1, FUN = mean) 161s stars object with 2 dimensions and 1 attribute 161s attribute(s): 161s Min. 1st Qu. Median Mean 3rd Qu. Max. 161s A1 7 31 55 55 79 103 161s dimension(s): 161s from to offset delta point x/y 161s X1 1 5 0 2 FALSE [x] 161s X2 1 5 0 2 FALSE [y] 161s > st_downsample(s, 1, FUN = mean)[[1]] 161s [,1] [,2] [,3] [,4] [,5] 161s [1,] 7 29 51 73 95 161s [2,] 9 31 53 75 97 161s [3,] 11 33 55 77 99 161s [4,] 13 35 57 79 101 161s [5,] 15 37 59 81 103 161s > st_downsample(s, 1, offset = 1, FUN = mean) 161s stars object with 2 dimensions and 1 attribute 161s attribute(s): 161s Min. 1st Qu. Median Mean 3rd Qu. Max. 161s A1 19 43 67 67 91 115 161s dimension(s): 161s from to offset delta point x/y 161s X1 1 5 1 2 FALSE [x] 161s X2 1 5 1 2 FALSE [y] 161s > st_downsample(s, 1, offset = c(0,1), FUN = mean)[[1]] 161s [,1] [,2] [,3] [,4] [,5] 161s [1,] 18 40 62 84 106 161s [2,] 20 42 64 86 108 161s [3,] 22 44 66 88 110 161s [4,] 24 46 68 90 112 161s [5,] 26 48 70 92 114 161s > st_downsample(s, 1, offset = c(0,1)) 161s stars object with 2 dimensions and 1 attribute 161s attribute(s): 161s Min. 1st Qu. Median Mean 3rd Qu. Max. 161s A1 12 36.5 61 61 85.5 110 161s dimension(s): 161s from to offset delta point x/y 161s X1 1 6 0 2 FALSE [x] 161s X2 1 5 1 2 FALSE [y] 161s > st_downsample(s, 1, offset = c(0,1))[[1]] 161s [,1] [,2] [,3] [,4] [,5] 161s [1,] 12 34 56 78 100 161s [2,] 14 36 58 80 102 161s [3,] 16 38 60 82 104 161s [4,] 18 40 62 84 106 161s [5,] 20 42 64 86 108 161s [6,] 22 44 66 88 110 161s > 161s BEGIN TEST ee.R 161s 161s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 161s Copyright (C) 2025 The R Foundation for Statistical Computing 161s Platform: x86_64-pc-linux-gnu 161s 161s R is free software and comes with ABSOLUTELY NO WARRANTY. 161s You are welcome to redistribute it under certain conditions. 161s Type 'license()' or 'licence()' for distribution details. 161s 161s R is a collaborative project with many contributors. 161s Type 'contributors()' for more information and 161s 'citation()' on how to cite R or R packages in publications. 161s 161s Type 'demo()' for some demos, 'help()' for on-line help, or 161s 'help.start()' for an HTML browser interface to help. 161s Type 'q()' to quit R. 161s 161s > # show that extract with exact=TRUE equals st_interpolate_aw(), only much faster 161s > options(digits=15) 161s > suppressPackageStartupMessages(library(stars)) 161s > L = st_as_stars(L7_ETMs)[,,,1] 161s > set.seed(123432) 161s > st_bbox(L) |> 161s + st_as_sfc() |> 161s + st_centroid() |> 161s + st_buffer(50) |> 161s + st_sample(10) |> 161s + st_combine() |> 161s + st_convex_hull() -> ch 161s > if (interactive()) { 161s + plot(L, reset = FALSE) 161s + plot(ch, add = TRUE, border = 'red', col = NA) 161s + } 161s > if (FALSE) { 161s + e = st_extract(L, ch)[[1]] 161s + a = aggregate(L, ch, mean)[[1]] 161s + identical(e, a) # same code path 161s + ee = aggregate(L, ch, mean, exact = TRUE)[[1]] 161s + all.equal(e, ee) 161s + aw = suppressWarnings(st_interpolate_aw(L, ch, extensive = FALSE)$V1) 161s + all.equal(as.vector(ee), aw) 161s + ee0 = st_extract(L, ch, exact = TRUE)[[1]] 161s + all.equal(ee0, ee) # ?? 161s + } 161s > 161s BEGIN TEST extract.R 161s 161s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 161s Copyright (C) 2025 The R Foundation for Statistical Computing 161s Platform: x86_64-pc-linux-gnu 161s 161s R is free software and comes with ABSOLUTELY NO WARRANTY. 161s You are welcome to redistribute it under certain conditions. 161s Type 'license()' or 'licence()' for distribution details. 161s 161s R is a collaborative project with many contributors. 161s Type 'contributors()' for more information and 161s 'citation()' on how to cite R or R packages in publications. 161s 161s Type 'demo()' for some demos, 'help()' for on-line help, or 161s 'help.start()' for an HTML browser interface to help. 161s Type 'q()' to quit R. 161s 161s > # Create 'stars' object 161s > set.seed(1331) 161s > suppressPackageStartupMessages(library(stars)) 162s > volcano = rbind(volcano, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA) # add NA rows 162s > d = st_dimensions(x = 1:ncol(volcano), y = 1:nrow(volcano)) 162s > (r = st_as_stars(t(volcano))) 162s stars object with 2 dimensions and 1 attribute 162s attribute(s): 162s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 162s A1 94 108 124 130.1879 150 195 732 162s dimension(s): 162s from to offset delta point x/y 162s X1 1 61 0 1 FALSE [x] 162s X2 1 99 0 1 FALSE [y] 162s > r = st_set_dimensions(r, 1, offset = 0, delta = 1) 162s > r = st_set_dimensions(r, 2, offset = nrow(volcano), delta = -1) 162s > 162s > # Create points 162s > pnt = st_sample(st_as_sfc(st_bbox(r)), 100) 162s > pnt = st_as_sf(pnt) 162s > 162s > # Extract - 'st_join' 162s > x = st_join(pnt, st_as_sf(r)) 162s > 162s > # Extract - 'st_extract' 162s > y = st_extract(r, pnt) 162s > 162s > # check there are NA's: 162s > any(is.na(x)) 162s [1] TRUE 162s > # Compare 162s > all.equal(x$A1, y[[1]]) 162s [1] TRUE 162s > 162s > ################################################ 162s > if (FALSE) { 162s + 162s + ## tic: segfaults 162s + # check equal results with stars_proxy: 162s + #x = st_extract(stars:::st_as_stars_proxy(r), pnt) 162s + #all.equal(x$A1, y[[1]]) 162s + #all.equal(x, y) 162s + 162s + r = c(r, 2*r, 10*r) 162s + x = st_join(pnt, st_as_sf(r)) 162s + y = st_as_sf(st_extract(r, pnt)) 162s + all.equal(x, y) 162s + 162s + ## tic: segfaults 162s + #x = st_extract(stars:::st_as_stars_proxy(merge(r)), pnt) 162s + #all.equal(st_as_sf(x), y) 162s + 162s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 162s + xp = read_stars(tif, proxy = TRUE) 162s + xm = read_stars(tif, proxy = FALSE) 162s + pts = st_sample(st_as_sfc(st_bbox(xp)), 10) 162s + pts = c(pts, st_as_sfc("POINT(0 0)"), pts) 162s + em = st_extract(xm, pts) 162s + if (utils::packageVersion("sf") >= "0.9-7") { 162s + ep = st_extract(xp, pts) 162s + print(all.equal(ep, em, check.attributes = TRUE)) 162s + } 162s + 162s + # two-attribute objects: 162s + library(stars) 162s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 162s + xp = read_stars(c(tif, tif), proxy = TRUE) 162s + xm = read_stars(c(tif, tif), proxy = FALSE) 162s + pts = st_sample(st_as_sfc(st_bbox(xp)), 10) 162s + pts = c(pts, st_as_sfc("POINT(0 0)"), pts) 162s + em = st_extract(xm, pts) 162s + if (utils::packageVersion("sf") >= "0.9-7") { 162s + ep = st_extract(xp, pts) 162s + print(all.equal(ep, em, check.attributes = TRUE)) 162s + } 162s + 162s + # single-attribute, single raster objects: 162s + tif1 = paste0(tempfile(), ".tif") 162s + write_stars(xm[1,,,1], "x.tif") 162s + xp = read_stars("x.tif", proxy = TRUE) 162s + xm = read_stars("x.tif", proxy = FALSE) 162s + em = st_extract(xm, pts) 162s + if (utils::packageVersion("sf") >= "0.9-7") { 162s + ep = st_extract(xp, pts) 162s + print(all.equal(ep, em, check.attributes = TRUE)) 162s + } 162s + 162s + # multiple-file attributes: 162s + x = c( 162s + "avhrr-only-v2.19810901.nc", 162s + "avhrr-only-v2.19810902.nc", 162s + "avhrr-only-v2.19810903.nc", 162s + "avhrr-only-v2.19810904.nc", 162s + "avhrr-only-v2.19810905.nc", 162s + "avhrr-only-v2.19810906.nc", 162s + "avhrr-only-v2.19810907.nc", 162s + "avhrr-only-v2.19810908.nc", 162s + "avhrr-only-v2.19810909.nc" 162s + ) 162s + file_list = system.file(paste0("netcdf/", x), package = "starsdata") 162s + if (!identical(file_list, "")) { 162s + y = read_stars(file_list, quiet = TRUE) 162s + print(y) 162s + st_crs(y) = "OGC:CRS84" 162s + pts = st_sample(st_as_sfc(st_bbox(y)), 10) 162s + em = st_extract(y, pts) 162s + 162s + (y = read_stars(file_list, quiet = TRUE, proxy = TRUE)) 162s + print(y) 162s + st_crs(y) = "OGC:CRS84" 162s + if (utils::packageVersion("sf") >= "0.9-7") { 162s + ep = st_extract(y, pts) 162s + print(all.equal(em, ep)) 162s + } 162s + } 162s + 162s + # nearest & bilinear comparison: 162s + if (utils::packageVersion("sf") >= "0.9-7") { 162s + set.seed(12331) 162s + s = st_as_stars(matrix(rnorm(16), 4)) 162s + pts = st_sample(st_as_sfc(st_bbox(s)), 10000, type = "regular") 162s + s1 = st_extract(s, pts, bilinear = FALSE) 162s + s2 = st_extract(s, pts, bilinear = TRUE) 162s + s1$s2 = s2[[1]] 162s + names(s1)[c(1,3)] = c("nearest", "bilinear") 162s + print(s1[sample(10000, 5),]) 162s + } 162s + } 162s > 162s BEGIN TEST gridtypes.R 162s 162s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 162s Copyright (C) 2025 The R Foundation for Statistical Computing 162s Platform: x86_64-pc-linux-gnu 162s 162s R is free software and comes with ABSOLUTELY NO WARRANTY. 162s You are welcome to redistribute it under certain conditions. 162s Type 'license()' or 'licence()' for distribution details. 162s 162s R is a collaborative project with many contributors. 162s Type 'contributors()' for more information and 162s 'citation()' on how to cite R or R packages in publications. 162s 162s Type 'demo()' for some demos, 'help()' for on-line help, or 162s 'help.start()' for an HTML browser interface to help. 162s Type 'q()' to quit R. 162s 162s > suppressPackageStartupMessages(library(stars)) 162s > 162s > # regular, but not spatial: 162s > d = st_dimensions(a = 1:3, b = 1:3, band = c("foo", "bar")) 162s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 162s stars object with 3 dimensions and 1 attribute 162s attribute(s): 162s Min. 1st Qu. Median Mean 3rd Qu. Max. 162s X 1 5.25 9.5 9.5 13.75 18 162s dimension(s): 162s from to offset delta point values 162s a 1 3 1 1 FALSE NULL 162s b 1 3 1 1 FALSE NULL 162s band 1 2 NA NA FALSE foo, bar 162s > as.data.frame(st, add_max=FALSE)[1:4,] 162s a b band X 162s 1 1 1 foo 1 162s 2 2 1 foo 2 162s 3 3 1 foo 3 162s 4 1 2 foo 4 162s > try(x <- st_bbox(st)) # error 162s Error in st_bbox.dimensions(st_dimensions(obj), ...) : 162s dimensions table does not have x & y, nor an sfc dimension 162s > 162s > # regular, geotransform: 162s > d = st_dimensions(x = 1:3, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 162s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 162s stars object with 3 dimensions and 1 attribute 162s attribute(s): 162s Min. 1st Qu. Median Mean 3rd Qu. Max. 162s X 1 5.25 9.5 9.5 13.75 18 162s dimension(s): 162s from to offset delta point values x/y 162s x 1 3 1 1 FALSE NULL [x] 162s y 1 3 1 1 FALSE NULL [y] 162s band 1 2 NA NA FALSE foo, bar 162s > as.data.frame(st, add_max=FALSE)[1:4,] 162s x y band X 162s 1 1.5 1.5 foo 1 162s 2 2.5 1.5 foo 2 162s 3 3.5 1.5 foo 3 162s 4 1.5 2.5 foo 4 162s > as.data.frame(st, add_max=TRUE)[1:4,] 162s x y band x_max y_max X 162s 1 1 1 foo 2 2 1 162s 2 2 1 foo 3 2 2 162s 3 3 1 foo 4 2 3 162s 4 1 2 foo 2 3 4 162s > st_bbox(st) 162s xmin ymin xmax ymax 162s 1 1 4 4 162s > 162s > # rectilinear with offset given: 162s > xd = c(1, 2, 4) 162s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 162s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 162s stars object with 3 dimensions and 1 attribute 162s attribute(s): 162s Min. 1st Qu. Median Mean 3rd Qu. Max. 162s X 1 5.25 9.5 9.5 13.75 18 162s dimension(s): 162s from to offset delta point values x/y 162s x 1 3 NA NA FALSE [1,2), [2,4), [4,6) [x] 162s y 1 3 1 1 FALSE NULL [y] 162s band 1 2 NA NA FALSE foo, bar 162s > as.data.frame(st, add_max=FALSE)[1:4,] 162s x y band X 162s 1 1.5 1.5 foo 1 162s 2 3.0 1.5 foo 2 162s 3 5.0 1.5 foo 3 162s 4 1.5 2.5 foo 4 162s > as.data.frame(st, add_max=TRUE)[1:4,] 162s x y band x_max y_max X 162s 1 1 1 foo 2 2 1 162s 2 2 1 foo 4 2 2 162s 3 4 1 foo 6 2 3 162s 4 1 2 foo 2 3 4 162s > st_bbox(st) 162s xmin ymin xmax ymax 162s 1 1 6 4 162s > 162s > # rectilinear with midpoints given: 162s > xd = c(1, 2, 4) 162s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), cell_midpoints = TRUE) 162s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 162s stars object with 3 dimensions and 1 attribute 162s attribute(s): 162s Min. 1st Qu. Median Mean 3rd Qu. Max. 162s X 1 5.25 9.5 9.5 13.75 18 162s dimension(s): 162s from to offset delta point values x/y 162s x 1 3 NA NA FALSE [0.5,1.5), [1.5,3.0), [3.0,5.0) [x] 162s y 1 3 0.5 1 FALSE NULL [y] 162s band 1 2 NA NA FALSE foo, bar 162s > as.data.frame(st, add_max=FALSE)[1:4,] 162s x y band X 162s 1 1.00 1 foo 1 162s 2 2.25 1 foo 2 162s 3 4.00 1 foo 3 162s 4 1.00 2 foo 4 162s > as.data.frame(st, add_max=TRUE)[1:4,] 162s x y band x_max y_max X 162s 1 0.5 0.5 foo 1.5 1.5 1 162s 2 1.5 0.5 foo 3.0 1.5 2 162s 3 3.0 0.5 foo 5.0 1.5 3 162s 4 0.5 1.5 foo 1.5 2.5 4 162s > st_bbox(st) 162s xmin ymin xmax ymax 162s 0.5 0.5 5.0 3.5 162s > 162s > # rectilinear with midpoints given, point support 162s > xd = c(1, 2, 4) 162s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), cell_midpoints = TRUE, point = TRUE) 162s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 162s stars object with 3 dimensions and 1 attribute 162s attribute(s): 162s Min. 1st Qu. Median Mean 3rd Qu. Max. 162s X 1 5.25 9.5 9.5 13.75 18 162s dimension(s): 162s from to offset delta point values x/y 162s x 1 3 NA NA TRUE 1, 2, 4 [x] 162s y 1 3 0.5 1 TRUE NULL [y] 162s band 1 2 NA NA TRUE foo, bar 162s > as.data.frame(st, add_max=FALSE)[1:4,] 162s x y band X 162s 1 1 1 foo 1 162s 2 2 1 foo 2 162s 3 4 1 foo 3 162s 4 1 2 foo 4 162s > as.data.frame(st, add_max=TRUE)[1:4,] 162s x y band x_max y_max X 162s 1 1 0.5 foo 1 1.5 1 162s 2 2 0.5 foo 2 1.5 2 162s 3 4 0.5 foo 4 1.5 3 162s 4 1 1.5 foo 1 2.5 4 162s > st_bbox(st) 162s xmin ymin xmax ymax 162s 1.0 0.5 4.0 3.5 162s > 162s > # rectilinear with start/end given: 162s > #xd = stars:::make_intervals(start = c(1,2,4), end = c(2, 4, 8)) 162s > xd = c(1, 2, 4, 8) # one more than dim of the data array 162s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 162s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 162s stars object with 3 dimensions and 1 attribute 162s attribute(s): 162s Min. 1st Qu. Median Mean 3rd Qu. Max. 162s X 1 5.25 9.5 9.5 13.75 18 162s dimension(s): 162s from to offset delta point values x/y 162s x 1 3 NA NA FALSE [1,2), [2,4), [4,8) [x] 162s y 1 3 1 1 FALSE NULL [y] 162s band 1 2 NA NA FALSE foo, bar 162s > as.data.frame(st, add_max=FALSE)[1:4,] 162s x y band X 162s 1 1.5 1.5 foo 1 162s 2 3.0 1.5 foo 2 162s 3 6.0 1.5 foo 3 162s 4 1.5 2.5 foo 4 162s > as.data.frame(st, add_max=TRUE)[1:4,] 162s x y band x_max y_max X 162s 1 1 1 foo 2 2 1 162s 2 2 1 foo 4 2 2 162s 3 4 1 foo 8 2 3 162s 4 1 2 foo 2 3 4 162s > st_bbox(st) 162s xmin ymin xmax ymax 162s 1 1 8 4 162s > 162s > # with sfc: 162s > sfc = st_sfc(st_point(0:1), st_point(2:1), st_point(4:3)) 162s > d = st_dimensions(x = sfc, y = 1:3, band = c("foo", "bar")) 162s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 162s stars object with 3 dimensions and 1 attribute 162s attribute(s): 162s Min. 1st Qu. Median Mean 3rd Qu. Max. 162s X 1 5.25 9.5 9.5 13.75 18 162s dimension(s): 162s from to offset delta point values 162s x 1 3 NA NA TRUE POINT (0 1),...,POINT (4 3) 162s y 1 3 1 1 FALSE NULL 162s band 1 2 NA NA FALSE foo, bar 162s > as.data.frame(st, add_max=FALSE)[1:4,] 162s x y band X 162s 1 POINT (0 1) 1 foo 1 162s 2 POINT (2 1) 1 foo 2 162s 3 POINT (4 3) 1 foo 3 162s 4 POINT (0 1) 2 foo 4 162s > st_as_sf(st, long = TRUE)[1:4,] 162s Simple feature collection with 4 features and 3 fields 162s Geometry type: POINT 162s Dimension: XY 162s Bounding box: xmin: 0 ymin: 1 xmax: 4 ymax: 3 162s CRS: NA 162s y band X x 162s 1 1 foo 1 POINT (0 1) 162s 2 1 foo 2 POINT (2 1) 162s 3 1 foo 3 POINT (4 3) 162s 4 2 foo 4 POINT (0 1) 162s > st_bbox(st) 162s xmin ymin xmax ymax 162s 0 1 4 3 162s > 162s > # rotated/sheared: 162s > d = st_dimensions(x = 1:3, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), affine = c(0.2, -0.2)) 162s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 162s stars object with 3 dimensions and 1 attribute 162s attribute(s): 162s Min. 1st Qu. Median Mean 3rd Qu. Max. 162s X 1 5.25 9.5 9.5 13.75 18 162s dimension(s): 162s Error in st_coordinates.stars(x, add_max = add_max, center = center, ...) : 162s add_max will not work for rotated/shared rasters 162s from to offset delta point values x/y 162s x 1 3 1 1 FALSE NULL [x] 162s y 1 3 1 1 FALSE NULL [y] 162s band 1 2 NA NA FALSE foo, bar 162s sheared raster with parameters: 0.2 -0.2 162s > as.data.frame(st, add_max=FALSE)[1:4,] 162s x y X 162s 1 1.6 1.4 1 162s 2 2.6 1.2 2 162s 3 3.6 1.0 3 162s 4 1.8 2.4 4 162s > try(as.data.frame(st, add_max=TRUE)[1:4,]) # errors 162s > st_bbox(st) 162s xmin ymin xmax ymax 162s 1.0 0.4 4.6 4.0 162s > 162s > # curvilinear: 162s > set.seed(13531) 162s > lon = st_as_stars(matrix(signif(runif(9), 2), 3, 3)) 162s > lat = st_as_stars(matrix(signif(runif(9), 2), 3, 3)) 162s > ll = setNames(c(lon, lat), c("lon", "lat")) 162s > d = st_dimensions(lon = 1:3, lat = 1:3) 162s > a = st_as_stars(list(X = array(1:9, c(3,3))), dimensions = d) 162s > (st = st_as_stars(a, curvilinear = ll)) 162s stars object with 2 dimensions and 1 attribute 162s attribute(s): 162s Min. 1st Qu. Median Mean 3rd Qu. Max. 162s X 1 3 5 5 7 9 162s dimension(s): 162s from to refsys point values x/y 162s lon 1 3 WGS 84 (CRS84) FALSE [3x3] 0.03,...,0.89 [x] 162s lat 1 3 WGS 84 (CRS84) FALSE [3x3] 0.021,...,0.89 [y] 162s curvilinear grid 162s > as.data.frame(st) 162s lon lat X 162s 1 0.89 0.250 1 162s 2 0.64 0.510 2 162s 3 0.30 0.670 3 162s 4 0.69 0.890 4 162s 5 0.47 0.890 5 162s 6 0.26 0.190 6 162s 7 0.57 0.021 7 162s 8 0.27 0.220 8 162s 9 0.03 0.340 9 162s > st_bbox(st) 162s xmin ymin xmax ymax 162s 0.030 0.021 0.890 0.890 162s > 162s > # time regular: 162s > t = as.Date("2019-01-20") + 0:3 162s > d = st_dimensions(t, sfc) 162s > (st = st_as_stars(list(a = matrix(1:12, 4, 3)), dimensions = d)) 162s stars object with 2 dimensions and 1 attribute 162s attribute(s): 162s Min. 1st Qu. Median Mean 3rd Qu. Max. 162s a 1 3.75 6.5 6.5 9.25 12 162s dimension(s): 162s from to offset delta refsys point values 162s X1 1 4 2019-01-20 1 days Date FALSE NULL 162s X2 1 3 NA NA NA TRUE POINT (0 1),...,POINT (4 3) 162s > as.data.frame(st) 162s X1 X2 a 162s 1 2019-01-20 POINT (0 1) 1 162s 2 2019-01-21 POINT (0 1) 2 162s 3 2019-01-22 POINT (0 1) 3 162s 4 2019-01-23 POINT (0 1) 4 162s 5 2019-01-20 POINT (2 1) 5 162s 6 2019-01-21 POINT (2 1) 6 162s 7 2019-01-22 POINT (2 1) 7 162s 8 2019-01-23 POINT (2 1) 8 162s 9 2019-01-20 POINT (4 3) 9 162s 10 2019-01-21 POINT (4 3) 10 162s 11 2019-01-22 POINT (4 3) 11 162s 12 2019-01-23 POINT (4 3) 12 162s > 162s > # time, rectilinear 162s > t = as.Date("2019-01-20") + c(0, 2, 3, 10) 162s > d = st_dimensions(t, sfc) 162s > (st = st_as_stars(list(a = matrix(1:12, 4, 3)), dimensions = d)) 162s stars object with 2 dimensions and 1 attribute 162s attribute(s): 162s Min. 1st Qu. Median Mean 3rd Qu. Max. 162s a 1 3.75 6.5 6.5 9.25 12 162s dimension(s): 162s from to refsys point values 162s X1 1 4 Date FALSE 2019-01-20,...,2019-01-30 162s X2 1 3 NA TRUE POINT (0 1),...,POINT (4 3) 162s > as.data.frame(st) 162s X1 X2 a 162s 1 2019-01-20 POINT (0 1) 1 162s 2 2019-01-22 POINT (0 1) 2 162s 3 2019-01-23 POINT (0 1) 3 162s 4 2019-01-30 POINT (0 1) 4 162s 5 2019-01-20 POINT (2 1) 5 162s 6 2019-01-22 POINT (2 1) 6 162s 7 2019-01-23 POINT (2 1) 7 162s 8 2019-01-30 POINT (2 1) 8 162s 9 2019-01-20 POINT (4 3) 9 162s 10 2019-01-22 POINT (4 3) 10 162s 11 2019-01-23 POINT (4 3) 11 162s 12 2019-01-30 POINT (4 3) 12 162s > 162s BEGIN TEST mdim.R 162s 162s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 162s Copyright (C) 2025 The R Foundation for Statistical Computing 162s Platform: x86_64-pc-linux-gnu 162s 162s R is free software and comes with ABSOLUTELY NO WARRANTY. 162s You are welcome to redistribute it under certain conditions. 162s Type 'license()' or 'licence()' for distribution details. 162s 162s R is a collaborative project with many contributors. 162s Type 'contributors()' for more information and 162s 'citation()' on how to cite R or R packages in publications. 162s 162s Type 'demo()' for some demos, 'help()' for on-line help, or 162s 'help.start()' for an HTML browser interface to help. 162s Type 'q()' to quit R. 162s 162s > Sys.setenv(TZ="") 162s > suppressPackageStartupMessages(library(stars)) 163s > matrix(1:4,2) 163s [,1] [,2] 163s [1,] 1 3 163s [2,] 2 4 163s > m = matrix(1:4,2) 163s > s = st_as_stars(m) 163s > 163s > s = st_set_dimensions(s, st_dimensions(s), xy = NULL) 163s > sfc = st_sfc(st_point(0:1), st_point(3:2)) 163s > s = st_set_dimensions(s, 1, sfc) |> st_set_crs(4326) 163s > tm = as.POSIXct("2023-03-04 12:35") + c(0, 3600) 163s > s = st_set_dimensions(s, 2, tm) 163s > f = tempfile(fileext = ".nc") 163s > write_mdim(s, f, as_float = FALSE) 163s > s2 = read_mdim(f) 163s Warning messages: 163s 1: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 163s GDAL Error 6: SetIndexingVariable() not implemented 163s 2: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 163s GDAL Error 6: SetIndexingVariable() not implemented 163s > #print(s2) 163s > print(all.equal(s, s2, check.attributes = FALSE)) 163s [1] TRUE 163s > print(all.equal(s, s2)) 163s [1] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"refsys\": Component \"input\": 1 string mismatch >" 163s [2] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"refsys\": Component \"wkt\": 1 string mismatch >" 163s [3] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"values\": Attributes: < Component \"crs\": Component \"input\": 1 string mismatch > >" 163s [4] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"values\": Attributes: < Component \"crs\": Component \"wkt\": 1 string mismatch > >" 163s [5] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"offset\": 'tzone' attributes are inconsistent ('' and 'UTC') >" 163s [6] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"point\": 'is.NA' value mismatch: 1 in current 0 in target >" 163s > 163s > st_crs(sfc) = st_crs(s2) 163s > st_crs(s) = st_crs(s2) 163s > tm = as.Date("2023-02-25") + 0:1 163s > sd = st_set_dimensions(s, 2, tm) 163s > print(sd) 163s stars object with 2 dimensions and 1 attribute 163s attribute(s): 163s Min. 1st Qu. Median Mean 3rd Qu. Max. 163s A1 1 1.75 2.5 2.5 3.25 4 163s dimension(s): 163s from to offset delta refsys point values 163s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 163s X2 1 2 2023-02-25 1 days Date FALSE NULL 163s > sd = st_set_dimensions(sd, 1, sfc) 163s > print(sd) 163s stars object with 2 dimensions and 1 attribute 163s attribute(s): 163s Min. 1st Qu. Median Mean 3rd Qu. Max. 163s A1 1 1.75 2.5 2.5 3.25 4 163s dimension(s): 163s from to offset delta refsys point values 163s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 163s X2 1 2 2023-02-25 1 days Date FALSE NULL 163s > f = tempfile(fileext = ".nc") 163s > write_mdim(sd, f) 163s > sd2 = read_mdim(f) 163s Warning messages: 163s 1: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 163s GDAL Error 6: SetIndexingVariable() not implemented 163s 2: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 163s GDAL Error 6: SetIndexingVariable() not implemented 163s > print(sd2) 163s stars object with 2 dimensions and 1 attribute 163s attribute(s): 163s Min. 1st Qu. Median Mean 3rd Qu. Max. 163s A1 1 1.75 2.5 2.5 3.25 4 163s dimension(s): 163s from to offset delta refsys point values 163s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 163s X2 1 2 2023-02-25 1 days Date NA NULL 163s > print(all.equal(sd, sd2, check.attributes = FALSE)) 163s [1] TRUE 163s > print(all.equal(sd, sd2)) 163s [1] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"point\": 'is.NA' value mismatch: 1 in current 0 in target >" 163s > # if (.Platform$OS.type == "unix") { 163s > # print(read_mdim(paste0("/vsizip/", (system.file("zarr/sic_daily_sample.zarr.zip", package = "stars")))) 163s > # } 163s > 163s BEGIN TEST nc.R 163s 163s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 163s Copyright (C) 2025 The R Foundation for Statistical Computing 163s Platform: x86_64-pc-linux-gnu 163s 163s R is free software and comes with ABSOLUTELY NO WARRANTY. 163s You are welcome to redistribute it under certain conditions. 163s Type 'license()' or 'licence()' for distribution details. 163s 163s R is a collaborative project with many contributors. 163s Type 'contributors()' for more information and 163s 'citation()' on how to cite R or R packages in publications. 163s 163s Type 'demo()' for some demos, 'help()' for on-line help, or 163s 'help.start()' for an HTML browser interface to help. 163s Type 'q()' to quit R. 163s 163s > # examples with the sf::nc polygon dataset NOT ABOUT NETCDF's, see e.g. stars.R netcdf.R 163s > suppressPackageStartupMessages(library(sf)) 163s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf")) 163s > m = st_set_geometry(nc, NULL) 163s > n = as.matrix(m[c("BIR74", "SID74", "NWBIR74", "BIR79", "SID79", "NWBIR79")]) 163s > dim(n) = c(county = 100, var = 3, year = 2) 163s > dimnames(n) = list(county = nc$NAME, var = c("BIR", "SID", "NWBIR"), year = c(1974, 1979)) 163s > suppressPackageStartupMessages(library(stars)) 163s > (st = st_as_stars(pop = n)) 163s stars object with 3 dimensions and 1 attribute 163s attribute(s): 163s Min. 1st Qu. Median Mean 3rd Qu. Max. 163s pop 0 8 538 1657.032 1784 30757 163s dimension(s): 163s from to values 163s county 1 100 Ashe,...,Brunswick 163s var 1 3 BIR , SID , NWBIR 163s year 1 2 1974, 1979 163s > foo <- st %>% st_set_dimensions(1, st_geometry(nc)) # %>% st_set_dimensions(3, c(1974, 1979)) 163s > st %>% st_set_dimensions(1, st_geometry(nc)) %>% st_set_dimensions(names = c("geometries", "var", "year")) 163s stars object with 3 dimensions and 1 attribute 163s attribute(s): 163s Min. 1st Qu. Median Mean 3rd Qu. Max. 163s pop 0 8 538 1657.032 1784 30757 163s dimension(s): 163s from to refsys point 163s geometries 1 100 NAD27 FALSE 163s var 1 3 NA NA 163s year 1 2 NA NA 163s values 163s geometries MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 163s var BIR , SID , NWBIR 163s year 1974, 1979 163s > foo 163s stars object with 3 dimensions and 1 attribute 163s attribute(s): 163s Min. 1st Qu. Median Mean 3rd Qu. Max. 163s pop 0 8 538 1657.032 1784 30757 163s dimension(s): 163s from to refsys point 163s county 1 100 NAD27 FALSE 163s var 1 3 NA NA 163s year 1 2 NA NA 163s values 163s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 163s var BIR , SID , NWBIR 163s year 1974, 1979 163s > st_bbox(foo) 163s xmin ymin xmax ymax 163s -84.32385 33.88199 -75.45698 36.58965 163s > (x = st_as_sf(foo)) 163s Simple feature collection with 100 features and 6 fields 163s Geometry type: MULTIPOLYGON 163s Dimension: XY 163s Bounding box: xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965 163s Geodetic CRS: NAD27 163s First 10 features: 163s BIR.1974 SID.1974 NWBIR.1974 BIR.1979 SID.1979 NWBIR.1979 163s 1 1091 1 10 1364 0 19 163s 2 487 0 10 542 3 12 163s 3 3188 5 208 3616 6 260 163s 4 508 1 123 830 2 145 163s 5 1421 9 1066 1606 3 1197 163s 6 1452 7 954 1838 5 1237 163s 7 286 0 115 350 2 139 163s 8 420 0 254 594 2 371 163s 9 968 4 748 1190 2 844 163s 10 1612 1 160 2038 5 176 163s county 163s 1 MULTIPOLYGON (((-81.47276 3... 163s 2 MULTIPOLYGON (((-81.23989 3... 163s 3 MULTIPOLYGON (((-80.45634 3... 163s 4 MULTIPOLYGON (((-76.00897 3... 163s 5 MULTIPOLYGON (((-77.21767 3... 163s 6 MULTIPOLYGON (((-76.74506 3... 163s 7 MULTIPOLYGON (((-76.00897 3... 163s 8 MULTIPOLYGON (((-76.56251 3... 163s 9 MULTIPOLYGON (((-78.30876 3... 163s 10 MULTIPOLYGON (((-80.02567 3... 163s > frac = function(x) x[2] / x[1] 163s > frac2 = function(x) c(sidsr = x[2] / x[1], nwbr = x[3] / x[1]) 163s > frac2an = function(x) c(x[2] / x[1], x[3] / x[1]) 163s > st_apply(foo, c(1,3), frac) 163s stars object with 2 dimensions and 1 attribute 163s attribute(s): 163s Min. 1st Qu. Median Mean 3rd Qu. Max. 163s frac 0 0.001197874 0.001930504 0.002042241 0.002599348 0.00955414 163s dimension(s): 163s from to refsys point 163s county 1 100 NAD27 FALSE 163s year 1 2 NA NA 163s values 163s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 163s year 1974, 1979 163s > st_apply(foo, c(1,3), frac2) 163s stars object with 3 dimensions and 1 attribute 163s attribute(s): 163s Min. 1st Qu. Median Mean 3rd Qu. Max. 163s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 163s dimension(s): 163s from to refsys point 163s frac2 1 2 NA NA 163s county 1 100 NAD27 FALSE 163s year 1 2 NA NA 163s values 163s frac2 sidsr, nwbr 163s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 163s year 1974, 1979 163s > st_apply(foo, c(1,3), frac2an) 163s stars object with 3 dimensions and 1 attribute 163s attribute(s): 163s Min. 1st Qu. Median Mean 3rd Qu. Max. 163s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 163s dimension(s): 163s from to refsys point 163s frac2an 1 2 NA NA 163s county 1 100 NAD27 FALSE 163s year 1 2 NA NA 163s values 163s frac2an NULL 163s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 163s year 1974, 1979 163s > library(abind) 163s > (x = aperm(st_apply(foo, c(1,3), frac2), c(2,3,1))) 163s stars object with 3 dimensions and 1 attribute 163s attribute(s): 163s Min. 1st Qu. Median Mean 3rd Qu. Max. 163s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 163s dimension(s): 163s from to refsys point 163s county 1 100 NAD27 FALSE 163s year 1 2 NA NA 163s frac2 1 2 NA NA 163s values 163s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 163s year 1974, 1979 163s frac2 sidsr, nwbr 163s > y = aperm(st_apply(foo, c(1,3), frac2), c("county","year","frac2")) 163s > all.equal(st_dimensions(x), st_dimensions(y)) 163s [1] TRUE 163s > 163s > split(foo, 2) 163s stars object with 2 dimensions and 3 attributes 163s attribute(s): 163s Min. 1st Qu. Median Mean 3rd Qu. Max. 163s BIR 248 1176.75 2265 3761.770 4450.75 30757 163s SID 0 2.00 5 7.515 9.00 57 163s NWBIR 1 206.00 742 1201.810 1315.75 11631 163s dimension(s): 163s from to refsys point 163s county 1 100 NAD27 FALSE 163s year 1 2 NA NA 163s values 163s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 163s year 1974, 1979 163s > split(foo, 3) 163s stars object with 2 dimensions and 2 attributes 163s attribute(s): 163s Min. 1st Qu. Median Mean 3rd Qu. Max. 163s 1974 0 8 501.5 1452.367 1580.50 21588 163s 1979 0 9 614.0 1861.697 2040.25 30757 163s dimension(s): 163s from to refsys point 163s county 1 100 NAD27 FALSE 163s var 1 3 NA NA 163s values 163s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 163s var BIR , SID , NWBIR 163s > 163s > st_crs(foo) 163s Coordinate Reference System: 163s User input: NAD27 163s wkt: 163s GEOGCRS["NAD27", 163s DATUM["North American Datum 1927", 163s ELLIPSOID["Clarke 1866",6378206.4,294.978698213898, 163s LENGTHUNIT["metre",1]]], 163s PRIMEM["Greenwich",0, 163s ANGLEUNIT["degree",0.0174532925199433]], 163s CS[ellipsoidal,2], 163s AXIS["geodetic latitude (Lat)",north, 163s ORDER[1], 163s ANGLEUNIT["degree",0.0174532925199433]], 163s AXIS["geodetic longitude (Lon)",east, 163s ORDER[2], 163s ANGLEUNIT["degree",0.0174532925199433]], 163s USAGE[ 163s SCOPE["Geodesy."], 163s AREA["North and central America: Antigua and Barbuda - onshore. Bahamas - onshore plus offshore over internal continental shelf only. Belize - onshore. British Virgin Islands - onshore. Canada onshore - Alberta, British Columbia, Manitoba, New Brunswick, Newfoundland and Labrador, Northwest Territories, Nova Scotia, Nunavut, Ontario, Prince Edward Island, Quebec, Saskatchewan and Yukon - plus offshore east coast. Cuba - onshore and offshore. El Salvador - onshore. Guatemala - onshore. Honduras - onshore. Panama - onshore. Puerto Rico - onshore. Mexico - onshore plus offshore east coast. Nicaragua - onshore. United States (USA) onshore and offshore - Alabama, Alaska, Arizona, Arkansas, California, Colorado, Connecticut, Delaware, Florida, Georgia, Idaho, Illinois, Indiana, Iowa, Kansas, Kentucky, Louisiana, Maine, Maryland, Massachusetts, Michigan, Minnesota, Mississippi, Missouri, Montana, Nebraska, Nevada, New Hampshire, New Jersey, New Mexico, New York, North Carolina, North Dakota, Ohio, Oklahoma, Oregon, Pennsylvania, Rhode Island, South Carolina, South Dakota, Tennessee, Texas, Utah, Vermont, Virginia, Washington, West Virginia, Wisconsin and Wyoming - plus offshore . US Virgin Islands - onshore."], 163s BBOX[7.15,167.65,83.17,-47.74]], 163s ID["EPSG",4267]] 163s > plot(foo) 163s > 163s > # subset vector cube: 163s > foo[nc[1]] 163s stars object with 3 dimensions and 1 attribute 163s attribute(s): 163s Min. 1st Qu. Median Mean 3rd Qu. Max. 163s pop 0 8 538 1657.032 1784 30757 163s dimension(s): 163s from to refsys point 163s county 1 100 NAD27 FALSE 163s var 1 3 NA NA 163s year 1 2 NA NA 163s values 163s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 163s var BIR , SID , NWBIR 163s year 1974, 1979 163s > 163s BEGIN TEST plot.R 163s 163s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 163s Copyright (C) 2025 The R Foundation for Statistical Computing 163s Platform: x86_64-pc-linux-gnu 163s 163s R is free software and comes with ABSOLUTELY NO WARRANTY. 163s You are welcome to redistribute it under certain conditions. 163s Type 'license()' or 'licence()' for distribution details. 163s 163s R is a collaborative project with many contributors. 163s Type 'contributors()' for more information and 163s 'citation()' on how to cite R or R packages in publications. 163s 163s Type 'demo()' for some demos, 'help()' for on-line help, or 163s 'help.start()' for an HTML browser interface to help. 163s Type 'q()' to quit R. 163s 163s > suppressPackageStartupMessages(library(stars)) 164s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 164s + data(air) # this loads several datasets in .GlobalEnv 164s + dim(air) 164s + d = st_dimensions(station = st_as_sfc(stations), time = dates) 164s + aq = st_as_stars(list(PM10 = air), dimensions = d) 164s + image(aperm(log(aq), 2:1), main = "NA pattern (white) in PM10 station time series") 164s + st_geometry(aq) 164s + } 164s Geometry set for 70 features 164s Geometry type: POINT 164s Dimension: XY 164s Bounding box: xmin: 6.28107 ymin: 47.80847 xmax: 14.78617 ymax: 54.92497 164s Geodetic CRS: +proj=longlat +datum=WGS84 +no_defs 164s First 5 geometries: 164s POINT (9.585911 53.67057) 164s POINT (9.68503 53.52418) 164s POINT (9.791584 54.07312) 164s POINT (13.64701 52.44775) 164s POINT (13.29635 52.65315) 164s > 164s > csv = system.file("tif/ESACCI-LC-Legend.csv", package = "starsdata") 164s > if (csv != "") { 164s + rgb = read.csv(csv, header = TRUE, sep = ";") 164s + luc = read_stars(system.file("tif/LUC3.tif", package = "starsdata")) 164s + plot(luc, rgb = rgb, axes = TRUE, key.pos = NULL) 164s + } 164s > 164s > # https://github.com/r-spatial/stars/issues/233 : 164s > nc = read_sf(system.file("shape/nc.shp", package = "sf")) 164s > output = st_as_stars(st_bbox(nc), nx = 1, ny = 1, values = 1) 164s > plot(output) 164s Warning message: 164s In plot.stars(output) : 164s breaks="quantile" leads to a single class; maybe try breaks="equal" instead? 164s > 164s BEGIN TEST predict.R 165s 165s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 165s Copyright (C) 2025 The R Foundation for Statistical Computing 165s Platform: x86_64-pc-linux-gnu 165s 165s R is free software and comes with ABSOLUTELY NO WARRANTY. 165s You are welcome to redistribute it under certain conditions. 165s Type 'license()' or 'licence()' for distribution details. 165s 165s R is a collaborative project with many contributors. 165s Type 'contributors()' for more information and 165s 'citation()' on how to cite R or R packages in publications. 165s 165s Type 'demo()' for some demos, 'help()' for on-line help, or 165s 'help.start()' for an HTML browser interface to help. 165s Type 'q()' to quit R. 165s 165s > suppressPackageStartupMessages(library(stars)) 165s > # predict: 165s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 165s > (x = read_stars(tif)) 165s stars object with 3 dimensions and 1 attribute 165s attribute(s): 165s Min. 1st Qu. Median Mean 3rd Qu. Max. 165s L7_ETMs.tif 1 54 69 68.91242 86 255 165s dimension(s): 165s from to offset delta refsys point x/y 165s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 165s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 165s band 1 6 NA NA NA NA 165s > st_crs(x) = st_crs(x) # cleans trailing space 165s > model = lm(x~L7_ETMs.tif, head(as.data.frame(x), 50)) 165s > x = predict(x, model) 165s > 165s > (y = read_stars(tif, proxy = TRUE)) 165s stars_proxy object with 1 attribute in 1 file(s): 165s $L7_ETMs.tif 165s [1] "[...]/L7_ETMs.tif" 165s 165s dimension(s): 166s from to offset delta refsys point x/y 166s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 166s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 166s band 1 6 NA NA NA NA 166s > (yp = predict(y, model)) 166s stars_proxy object with 1 attribute in 1 file(s): 166s $L7_ETMs.tif 166s [1] "[...]/L7_ETMs.tif" 166s 166s dimension(s): 166s from to offset delta refsys point x/y 166s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 166s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 166s band 1 6 NA NA NA NA 166s call_list: 166s [[1]] 166s predict(object = object, model = model) 166s attr(,".Environment") 166s 166s 166s This object has pending lazy operations: dimensions as printed may not reflect this. 166s > all.equal(x, st_as_stars(yp)) 166s [1] TRUE 166s > 166s > yy = st_set_dimensions(y, 3, values = paste0("band", 1:6)) 166s > (y_spl = split(yy, 3)) 166s stars_proxy object with 1 attribute in 1 file(s): 166s $L7_ETMs.tif 166s [1] "[...]/L7_ETMs.tif" 166s 166s dimension(s): 166s from to offset delta refsys point values 166s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 166s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 166s band 1 6 NA NA NA NA band1,...,band6 166s x/y 166s x [x] 166s y [y] 166s band 166s call_list: 166s [[1]] 166s split(x = x, 3) 166s attr(,".Environment") 166s 166s 166s This object has pending lazy operations: dimensions as printed may not reflect this. 166s > as.data.frame(st_as_stars(split(yy, 3)))[1:3,] 166s x y band1 band2 band3 band4 band5 band6 166s 1 288790.5 9120747 69 56 46 79 86 46 166s 2 288819.0 9120747 69 57 49 75 88 49 166s 3 288847.5 9120747 63 52 45 66 75 41 166s > 166s BEGIN TEST proxy.R 166s 166s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 166s Copyright (C) 2025 The R Foundation for Statistical Computing 166s Platform: x86_64-pc-linux-gnu 166s 166s R is free software and comes with ABSOLUTELY NO WARRANTY. 166s You are welcome to redistribute it under certain conditions. 166s Type 'license()' or 'licence()' for distribution details. 166s 166s R is a collaborative project with many contributors. 166s Type 'contributors()' for more information and 166s 'citation()' on how to cite R or R packages in publications. 166s 166s Type 'demo()' for some demos, 'help()' for on-line help, or 166s 'help.start()' for an HTML browser interface to help. 166s Type 'q()' to quit R. 166s 166s > Sys.setenv(TZ="UTC") 166s > suppressPackageStartupMessages(library(sf)) 166s > suppressPackageStartupMessages(library(stars)) 166s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 166s > (r = read_stars(tif, proxy = TRUE)) 166s stars_proxy object with 1 attribute in 1 file(s): 166s $L7_ETMs.tif 166s [1] "[...]/L7_ETMs.tif" 166s 166s dimension(s): 167s from to offset delta refsys point x/y 167s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 167s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 167s band 1 6 NA NA NA NA 167s > if (interactive()) { 167s + plot(r) 167s + } 167s > dim(r) 167s x y band 167s 349 352 6 167s > r[,,,2:3] 167s stars_proxy object with 1 attribute in 1 file(s): 167s $L7_ETMs.tif 167s [1] "[...]/L7_ETMs.tif" 167s 167s dimension(s): 167s from to offset delta refsys point x/y 167s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 167s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 167s band 2 3 NA NA NA NA 167s > r+r 167s stars_proxy object with 1 attribute in 1 file(s): 167s $L7_ETMs.tif 167s [1] "[...]/L7_ETMs.tif" 167s 167s dimension(s): 167s from to offset delta refsys point x/y 167s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 167s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 167s band 1 6 NA NA NA NA 167s call_list: 167s [[1]] 167s e1 + e2 167s attr(,".Environment") 167s 167s 167s This object has pending lazy operations: dimensions as printed may not reflect this. 167s > st_as_stars(sin(r), downsample = 2) 167s stars object with 3 dimensions and 1 attribute 167s attribute(s): 167s Min. 1st Qu. Median Mean 3rd Qu. Max. 167s L7_ETMs.tif -0.9999902 -0.676772 0.0353983 0.01655317 0.7210377 0.9999119 167s dimension(s): 167s from to offset delta refsys point x/y 167s x 1 117 288776 85.01 SIRGAS 2000 / UTM zone 25S FALSE [x] 167s y 1 118 9120761 -85.02 SIRGAS 2000 / UTM zone 25S FALSE [y] 167s band 1 6 NA NA NA NA 167s > aperm(r, c(3,2,1)) 167s stars_proxy object with 1 attribute in 1 file(s): 167s $L7_ETMs.tif 167s [1] "[...]/L7_ETMs.tif" 167s 167s dimension(s): 167s from to offset delta refsys point x/y 167s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 167s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 167s band 1 6 NA NA NA NA 167s call_list: 167s [[1]] 167s aperm(a = a, perm = perm) 167s attr(,".Environment") 167s 167s 167s This object has pending lazy operations: dimensions as printed may not reflect this. 167s > if (interactive()) { 167s + plot(r) 167s + } 167s > (xx = c(r,r)) 167s stars_proxy object with 2 attributes in 2 file(s): 167s $L7_ETMs.tif 167s [1] "[...]/L7_ETMs.tif" 167s 167s $L7_ETMs.tif 167s [1] "[...]/L7_ETMs.tif" 167s 167s dimension(s): 167s from to offset delta refsys point x/y 167s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 167s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 167s band 1 6 NA NA NA NA 167s > st_redimension(xx) 167s stars_proxy object with 1 attribute in 2 file(s): 167s $L7_ETMs.tif.L7_ETMs.tif 167s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 167s 167s dimension(s): 167s from to offset delta refsys point 167s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 167s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 167s band 1 6 NA NA NA NA 167s new_dim 1 2 NA NA NA NA 167s values x/y 167s x NULL [x] 167s y NULL [y] 167s band NULL 167s new_dim L7_ETMs.tif, L7_ETMs.tif 167s > st_as_stars(r) 167s stars object with 3 dimensions and 1 attribute 167s attribute(s): 167s Min. 1st Qu. Median Mean 3rd Qu. Max. 167s L7_ETMs.tif 1 54 69 68.91242 86 255 167s dimension(s): 167s from to offset delta refsys point x/y 167s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 167s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 167s band 1 6 NA NA NA NA 167s > (y = st_apply(r, 1:2, max)) 167s stars_proxy object with 1 attribute in 1 file(s): 167s $L7_ETMs.tif 167s [1] "[...]/L7_ETMs.tif" 167s 167s dimension(s): 167s from to offset delta refsys point x/y 167s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 167s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 167s band 1 6 NA NA NA NA 167s call_list: 167s [[1]] 167s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 167s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 167s attr(,".Environment") 167s 167s 167s This object has pending lazy operations: dimensions as printed may not reflect this. 167s > (yy = st_as_stars(y, downsample = 1)) 167s stars object with 2 dimensions and 1 attribute 167s attribute(s): 167s Min. 1st Qu. Median Mean 3rd Qu. Max. 167s max 55 85 96 99.38568 113 255 167s dimension(s): 167s from to offset delta refsys point x/y 167s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE [x] 167s y 1 176 9120761 -57 SIRGAS 2000 / UTM zone 25S FALSE [y] 167s > (y = adrop(st_apply(r, c("x", "y"), max))) 167s stars_proxy object with 1 attribute in 1 file(s): 167s $L7_ETMs.tif 167s [1] "[...]/L7_ETMs.tif" 167s 167s dimension(s): 167s from to offset delta refsys point x/y 167s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 167s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 167s band 1 6 NA NA NA NA 167s call_list: 167s [[1]] 167s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 167s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 167s attr(,".Environment") 167s 167s 167s [[2]] 167s adrop(x = x, drop = drop) 167s attr(,".Environment") 167s 167s 167s This object has pending lazy operations: dimensions as printed may not reflect this. 167s > (yy = st_as_stars(y, downsample = 1)) 167s stars object with 2 dimensions and 1 attribute 167s attribute(s): 167s Min. 1st Qu. Median Mean 3rd Qu. Max. 167s max 55 85 96 99.38568 113 255 167s dimension(s): 167s from to offset delta refsys point x/y 167s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE [x] 167s y 1 176 9120761 -57 SIRGAS 2000 / UTM zone 25S FALSE [y] 167s > plot(yy) 167s > (y = adrop(st_apply(r, c("x", "band"), max))) 167s stars_proxy object with 1 attribute in 1 file(s): 167s $L7_ETMs.tif 167s [1] "[...]/L7_ETMs.tif" 167s 167s dimension(s): 167s from to offset delta refsys point x/y 167s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 167s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 167s band 1 6 NA NA NA NA 167s call_list: 167s [[1]] 167s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 167s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 167s attr(,".Environment") 167s 167s 167s [[2]] 167s adrop(x = x, drop = drop) 167s attr(,".Environment") 167s 167s 167s This object has pending lazy operations: dimensions as printed may not reflect this. 167s > (yy = st_as_stars(y, downsample = 1)) 167s stars object with 2 dimensions and 1 attribute 167s attribute(s): 167s Min. 1st Qu. Median Mean 3rd Qu. Max. 167s max 77 111 133 137.8505 157 255 167s dimension(s): 167s from to offset delta refsys point 167s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE 167s band 1 6 NA NA NA NA 167s > rm(yy) 167s > 167s > (xx = c(r,r)) 167s Warning message: 167s In FUN(X[[i]], ...) : 167s st_apply on x/y dimensions applied to downsampled image(s) 167s stars_proxy object with 2 attributes in 2 file(s): 167s $L7_ETMs.tif 167s [1] "[...]/L7_ETMs.tif" 167s 167s $L7_ETMs.tif 167s [1] "[...]/L7_ETMs.tif" 167s 167s dimension(s): 167s from to offset delta refsys point x/y 167s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 167s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 167s band 1 6 NA NA NA NA 167s > names(xx) = c("a", "b") 167s > xx["a"] 167s stars_proxy object with 1 attribute in 1 file(s): 167s $a 167s [1] "[...]/L7_ETMs.tif" 167s 167s dimension(s): 167s from to offset delta refsys point x/y 167s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 167s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 167s band 1 6 NA NA NA NA 167s > pt = st_point(c(x = 290462.103109179, y = 9114202.32594085)) 167s > buf = st_buffer(st_sfc(pt, crs = st_crs(r)), 1500) 167s > buf = st_sfc(st_polygon(list(st_buffer(pt, 1500)[[1]], st_buffer(pt, 1000)[[1]])), 167s + crs = st_crs(r)) 167s > r = r[buf] # crops 167s > r = r[buf, epsilon = 1e-5] # crops with shrinked bounding box 167s > 167s > # c: 167s > f = system.file("netcdf/avhrr-only-v2.19810902.nc", package = "starsdata") 167s > if (FALSE && f != "") { 167s + files = c("avhrr-only-v2.19810901.nc", 167s + "avhrr-only-v2.19810902.nc", 167s + "avhrr-only-v2.19810903.nc", 167s + "avhrr-only-v2.19810904.nc", 167s + "avhrr-only-v2.19810905.nc", 167s + "avhrr-only-v2.19810906.nc", 167s + "avhrr-only-v2.19810907.nc", 167s + "avhrr-only-v2.19810908.nc", 167s + "avhrr-only-v2.19810909.nc") 167s + l = list() 167s + for (f in files) { 167s + from = system.file(paste0("netcdf/", f), package = "starsdata") 167s + l[[f]] = read_stars(from, sub = c("sst", "anom"), proxy = TRUE) 167s + } 167s + ret = do.call(c, l) 167s + print(ret) 167s + all = system.file(paste0("netcdf/", files), package = "starsdata") 167s + ret = read_stars(all, sub = c("sst", "anom")) 167s + print(ret) 167s + print(st_redimension(ret)) # collapse the two attributes into new dimension 167s + 167s + try(ret <- c(l[[1]], l[[2]], l[[3]], along = list(times = as.Date("1981-09-01") + 0:2))) 167s + #print(ret) 167s + #ret = adrop(adrop(c(l[[1]], l[[2]], l[[3]], along = "times"))) 167s + #print(ret) 167s + ret <- st_redimension(l[[1]], along = list(times = as.Date("1981-09-01") + 0:1)) 167s + print(ret) 167s + } 167s > 167s > # demonstrate that environments work: 167s > x = read_stars(tif, proxy = TRUE) 167s > f = function(x) { 167s + g = function(xx) { 167s + ndvi = function(z1, z2, z3, z4, z5, z6) (z2-z1)/(z2+z1) 167s + st_apply(xx, 1:2, ndvi) 167s + } 167s + g(x) 167s + } 167s > (x = f(x)) 167s stars_proxy object with 1 attribute in 1 file(s): 167s $L7_ETMs.tif 167s [1] "[...]/L7_ETMs.tif" 167s 167s dimension(s): 167s from to offset delta refsys point x/y 167s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 167s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 167s band 1 6 NA NA NA NA 167s call_list: 167s [[1]] 167s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 167s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 167s attr(,".Environment") 167s 167s 167s This object has pending lazy operations: dimensions as printed may not reflect this. 167s > st_as_stars(x) 167s stars object with 2 dimensions and 1 attribute 167s attribute(s): 167s Min. 1st Qu. Median Mean 3rd Qu. Max. 167s ndvi -0.2828283 -0.1081081 -0.08287293 -0.08464615 -0.05882353 0.09259259 167s dimension(s): 167s from to offset delta refsys point x/y 167s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 167s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 167s > 167s BEGIN TEST raster.R 167s 167s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 167s Copyright (C) 2025 The R Foundation for Statistical Computing 167s Platform: x86_64-pc-linux-gnu 167s 167s R is free software and comes with ABSOLUTELY NO WARRANTY. 167s You are welcome to redistribute it under certain conditions. 167s Type 'license()' or 'licence()' for distribution details. 167s 167s R is a collaborative project with many contributors. 167s Type 'contributors()' for more information and 167s 'citation()' on how to cite R or R packages in publications. 167s 167s Type 'demo()' for some demos, 'help()' for on-line help, or 167s 'help.start()' for an HTML browser interface to help. 167s Type 'q()' to quit R. 167s 167s > options(rgdal_show_exportToProj4_warnings = "none") 167s > suppressPackageStartupMessages(library(stars)) 167s > 167s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require("raster", quietly = TRUE) && 167s + suppressPackageStartupMessages(require("terra", quietly = TRUE))) { 167s + 167s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 167s + (x = read_stars(tif)) 167s + (r = as(x, "Raster")) 167s + (y = st_as_stars(r)) 167s + 167s + # single band: 167s + x = adrop(x[,,,1]) 167s + r = as(x, "Raster") 167s + (y = st_as_stars(r)) 167s + 167s + # proxy: 167s + (x = read_stars(tif, proxy = TRUE)) 167s + (r = as(x, "Raster")) 167s + (y = st_as_stars(r)) 167s + (y2 = st_as_stars(r, proxy = TRUE)) 167s + } 170s stars_proxy object with 1 attribute in 1 file(s): 170s $L7_ETMs.tif 170s [1] "[...]/L7_ETMs.tif" 170s 170s dimension(s): 170s from to offset delta refsys point x/y 170s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 170s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 170s band 1 6 NA NA NA NA 170s > 170s > if (require(terra, quietly = TRUE)) { 170s + ## terra ------------- 170s + stopifnot(require(terra)) 170s + (x = read_stars(tif)) 170s + (r = as(x, "SpatRaster")) 170s + (y = st_as_stars(r)) 170s + 170s + # single band: 170s + x = adrop(x[,,,1]) 170s + r = as(x, "SpatRaster") 170s + (y = st_as_stars(r)) 170s + 170s + # proxy: 170s + (x = read_stars(tif, proxy = TRUE)) 170s + (r = as(x, "SpatRaster")) 170s + (y = st_as_stars(r)) 170s + (y2 = st_as_stars(r, proxy = TRUE)) 170s + 170s + f = system.file("tif/lc.tif", package = "stars") 170s + lc = read_stars(system.file("tif/lc.tif", package = "stars")) 170s + levels(lc[[1]]) 170s + r = rast(lc) 170s + e = attr(lc[[1]], "exclude") 170s + 170s + if (packageVersion("terra") >= "1.5.48") { 170s + 170s + print(all.equal(terra::levels(r)[[1]][,2], terra::levels(rast(f))[[1]][!e,2])) 170s + print(all.equal(terra::coltab(r)[[1]][!e,], terra::coltab(rast(f))[[1]][!e,], check.attributes = FALSE)) 170s + 170s + r<- rast(nrow=10, ncol=10) 170s + set.seed(5) 170s + values(r)<- sample(1:3, size = ncell(r), replace = TRUE) 170s + levels(r) <- data.frame(ID=1:3, category = c("c1", "c2", "c3")) 170s + 170s + r2<- rast(nrow=10, ncol=10) 170s + set.seed(6) 170s + values(r2)<- sample(c(0,2,3), size = ncell(r2), replace = TRUE) 170s + levels(r2) <- data.frame(ID=c(0,2,3), category = c("x1", "x2", "x3")) 170s + 170s + r3<- c(r,r2) 170s + names(r3)<- c("lyr.1", "lyr.2") 170s + 170s + r3_stars<- st_as_stars(r3) 170s + 170s + st_redimension(r3_stars) |> print() 170s + rast(r3_stars) |> levels() |> print() 170s + 170s + m = matrix(1:121, 11, 11) 170s + bb = st_bbox(c(xmin=0, xmax=11, ymin=0, ymax=11)) 170s + s = st_as_stars(bb, values = m) 170s + r = rast(s) 170s + aggregate(r, 2) |> st_as_stars() -> r.s 170s + stopifnot(isTRUE(all.equal(r.s[,1:5,1:5], st_downsample(s, 1, FUN = mean)))) 170s + } 170s + } 171s [1] TRUE 171s [1] TRUE 171s stars object with 3 dimensions and 1 attribute 171s attribute(s): 171s lyr.1.lyr.2 171s c1:34 171s c2:32 171s c3:34 171s x1:28 171s x2:37 171s x3:35 171s dimension(s): 171s from to offset delta refsys values x/y 171s x 1 10 -180 36 WGS 84 (CRS84) NULL [x] 171s y 1 10 90 -18 WGS 84 (CRS84) NULL [y] 171s new_dim 1 2 NA NA NA lyr.1, lyr.2 171s [[1]] 171s IDs categories 171s 1 1 c1 171s 2 2 c2 171s 3 3 c3 171s 171s [[2]] 171s IDs categories 171s 1 0 x1 171s 2 2 x2 171s 3 3 x3 171s 171s > 171s > 171s BEGIN TEST rasterize.R 171s 171s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 171s Copyright (C) 2025 The R Foundation for Statistical Computing 171s Platform: x86_64-pc-linux-gnu 171s 171s R is free software and comes with ABSOLUTELY NO WARRANTY. 171s You are welcome to redistribute it under certain conditions. 171s Type 'license()' or 'licence()' for distribution details. 171s 171s R is a collaborative project with many contributors. 171s Type 'contributors()' for more information and 171s 'citation()' on how to cite R or R packages in publications. 171s 171s Type 'demo()' for some demos, 'help()' for on-line help, or 171s 'help.start()' for an HTML browser interface to help. 171s Type 'q()' to quit R. 171s 171s > suppressPackageStartupMessages(library(stars)) 171s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf")) 171s > (x = st_rasterize(nc)) # default grid: 172s stars object with 2 dimensions and 12 attributes 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 172s AREA 0.042 0.108 0.142 1.451932e-01 0.181 0.241 30904 172s PERIMETER 0.999 1.461 1.716 1.786110e+00 2.004 3.640 30904 172s CNTY_ 1825.000 1907.000 1989.000 1.998403e+03 2085.000 2241.000 30904 172s CNTY_ID 1825.000 1907.000 1989.000 1.998403e+03 2085.000 2241.000 30904 172s FIPSNO 37001.000 37049.000 37101.000 3.710042e+04 37153.000 37199.000 30904 172s CRESS_ID 1.000 25.000 51.000 5.071206e+01 77.000 100.000 30904 172s BIR74 248.000 1323.000 2648.000 3.791637e+03 4139.000 21588.000 30904 172s SID74 0.000 3.000 5.000 7.891985e+00 10.000 44.000 30904 172s NWBIR74 1.000 297.000 844.000 1.246210e+03 1396.000 8027.000 30904 172s BIR79 319.000 1606.000 3108.000 4.852046e+03 5400.000 30757.000 30904 172s SID79 0.000 3.000 6.000 9.584098e+00 13.000 57.000 30904 172s NWBIR79 3.000 360.000 1058.000 1.604642e+03 1524.000 11631.000 30904 172s dimension(s): 172s from to offset delta refsys point x/y 172s x 1 461 -84.32 0.01925 NAD27 FALSE [x] 172s y 1 141 36.59 -0.01925 NAD27 FALSE [y] 172s > plot(x, axes = TRUE) 172s > # a bit more customized grid: 172s > (x = st_rasterize(nc, st_as_stars(st_bbox(nc), nx = 100, ny = 50, values = NA_real_))) 172s stars object with 2 dimensions and 12 attributes 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 172s AREA 0.042 0.108 0.142 0.145536 0.181 0.241 2373 172s PERIMETER 0.999 1.470 1.716 1.789032 2.004 3.640 2373 172s CNTY_ 1825.000 1908.000 1989.000 1999.761325 2088.000 2241.000 2373 172s CNTY_ID 1825.000 1908.000 1989.000 1999.761325 2088.000 2241.000 2373 172s FIPSNO 37001.000 37049.000 37101.000 37100.327750 37151.000 37199.000 2373 172s CRESS_ID 1.000 25.000 51.000 50.663875 76.000 100.000 2373 172s BIR74 248.000 1323.500 2648.000 3790.530263 4139.000 21588.000 2373 172s SID74 0.000 3.000 5.000 7.905976 10.000 44.000 2373 172s NWBIR74 1.000 289.000 844.000 1246.116483 1396.000 8027.000 2373 172s BIR79 319.000 1606.000 3108.000 4848.231062 5386.000 30757.000 2373 172s SID79 0.000 3.000 6.000 9.574419 13.000 57.000 2373 172s NWBIR79 3.000 360.000 1058.000 1602.740769 1524.000 11631.000 2373 172s dimension(s): 172s from to offset delta refsys point x/y 172s x 1 100 -84.32 0.08867 NAD27 FALSE [x] 172s y 1 50 36.59 -0.05415 NAD27 FALSE [y] 172s > plot(x, axes = TRUE) 172s > (ls = st_sf(a = 1:2, st_sfc(st_linestring(rbind(c(0.1, 0), c(1.1, 1))), st_linestring(rbind(c(0, 0.05), c(1, 0.05)))))) 172s Simple feature collection with 2 features and 1 field 172s Geometry type: LINESTRING 172s Dimension: XY 172s Bounding box: xmin: 0 ymin: 0 xmax: 1.1 ymax: 1 172s CRS: NA 172s a 172s 1 1 172s 2 2 172s c..st_sfc.st_linestring.rbind.c.0.1..0...c.1.1..1.....st_linestring.rbind.c.0..........0.05...c.1..0.05...... 172s 1 LINESTRING (0.1 0, 1.1 1) 172s 2 LINESTRING (0 0.05, 1 0.05) 172s > (grd = st_as_stars(st_bbox(ls), nx = 10, ny = 10, xlim = c(0, 1.0), ylim = c(0, 1), values = NA_real_)) 172s stars object with 2 dimensions and 1 attribute 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 172s values NA NA NA NaN NA NA 100 172s dimension(s): 172s from to offset delta x/y 172s x 1 10 0 0.1 [x] 172s y 1 10 1 -0.1 [y] 172s > # the following two plots confirm that (only) the 172s > # upper-left corner is part of the grid cell (when dy is negative), leading 172s > # to a seemingly half-gridcell-shift problem: 172s > ## sf_extSoftVersion()["GDAL"] 172s > plot(st_rasterize(ls, grd), axes = TRUE, reset = FALSE) # ALL_TOUCHED=FALSE; 172s > plot(ls, add = TRUE, col = "red") 172s > plot(st_rasterize(ls, grd, options = "ALL_TOUCHED=TRUE"), axes = TRUE, reset = FALSE) 172s > plot(ls, add = TRUE, col = "red") 172s > # add lines to existing 0 values, summing values in case of multiple lines: 172s > (grd = st_as_stars(st_bbox(ls), nx = 10, ny = 10, xlim = c(0, 1.0), ylim = c(0, 1), values = 0)) 172s stars object with 2 dimensions and 1 attribute 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. 172s values 0 0 0 0 0 0 172s dimension(s): 172s from to offset delta x/y 172s x 1 10 0 0.1 [x] 172s y 1 10 1 -0.1 [y] 172s > r = st_rasterize(ls, grd, options = c("MERGE_ALG=ADD", "ALL_TOUCHED=TRUE")) 172s > plot(r, axes = TRUE, reset = FALSE) 172s > plot(ls, add = TRUE, col = "red") 172s > 172s BEGIN TEST rectilinear.R 172s 172s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 172s Copyright (C) 2025 The R Foundation for Statistical Computing 172s Platform: x86_64-pc-linux-gnu 172s 172s R is free software and comes with ABSOLUTELY NO WARRANTY. 172s You are welcome to redistribute it under certain conditions. 172s Type 'license()' or 'licence()' for distribution details. 172s 172s R is a collaborative project with many contributors. 172s Type 'contributors()' for more information and 172s 'citation()' on how to cite R or R packages in publications. 172s 172s Type 'demo()' for some demos, 'help()' for on-line help, or 172s 'help.start()' for an HTML browser interface to help. 172s Type 'q()' to quit R. 172s 172s > suppressPackageStartupMessages(library(stars)) 172s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 172s > x = read_stars(tif) 172s > (xx = x[,c(1:347,349),c(1:350,352),]) # rectilinear: one-but-last row & col missing 172s stars object with 3 dimensions and 1 attribute 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. 172s L7_ETMs.tif 1 54 69 68.9915 86 255 172s dimension(s): 172s from to refsys point 172s x 1 348 SIRGAS 2000 / UTM zone 25S FALSE 172s y 1 351 SIRGAS 2000 / UTM zone 25S FALSE 172s band 1 6 NA NA 172s values x/y 172s x [288790.5,288819),...,[298708.5,298737) [x] 172s y [9120747,9120718),...,[9110743,9110715) [y] 172s band NULL 172s > image(xx) # chooses useRaster itself 172s > # see also tidy.R for a ggplot example, leaving out the row. 172s > 172s > m = matrix(1:16, 4, 4) 172s > x = 1:4 172s > y = 2:5 172s > (st = st_as_stars(list(m = m), dimensions = st_dimensions(x = x, y = y))) 172s stars object with 2 dimensions and 1 attribute 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. 172s m 1 4.75 8.5 8.5 12.25 16 172s dimension(s): 172s from to offset delta point x/y 172s x 1 4 1 1 FALSE [x] 172s y 1 4 2 1 FALSE [y] 172s > st = st_set_dimensions(st, 1, values = c(1,2,3,4,6)) 172s > st = st_set_dimensions(st, 2, values = c(2,3,4,5,8)) 172s > try(st_set_dimensions(st, 2, values = c(2,3,4,5,8,20))) # one too many 172s Error in st_set_dimensions(st, 2, values = c(2, 3, 4, 5, 8, 20)) : 172s length of values ( 6 ) does not match length of dimension > 172s > # $<-.stars: 172s > st$foo = st$m * 2 172s 2 ( 4 ) 172s > st 172s stars object with 2 dimensions and 2 attributes 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. 172s m 1 4.75 8.5 8.5 12.25 16 172s foo 2 9.50 17.0 17.0 24.50 32 172s dimension(s): 172s from to point values x/y 172s x 1 4 FALSE [1,2),...,[4,6) [x] 172s y 1 4 FALSE [2,3),...,[5,8) [y] 172s > 172s > # st_as_sf: 172s > 172s > if (utils::packageVersion("sf") > "0.7.2") { 172s + plot(st_as_sf(st, as_points = FALSE), axes = TRUE) 172s + } 173s > 173s > image(st, text_values = TRUE, axes = TRUE) 173s > 173s BEGIN TEST redimension.R 173s 173s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 173s Copyright (C) 2025 The R Foundation for Statistical Computing 173s Platform: x86_64-pc-linux-gnu 173s 173s R is free software and comes with ABSOLUTELY NO WARRANTY. 173s You are welcome to redistribute it under certain conditions. 173s Type 'license()' or 'licence()' for distribution details. 173s 173s R is a collaborative project with many contributors. 173s Type 'contributors()' for more information and 173s 'citation()' on how to cite R or R packages in publications. 173s 173s Type 'demo()' for some demos, 'help()' for on-line help, or 173s 'help.start()' for an HTML browser interface to help. 173s Type 'q()' to quit R. 173s 173s > suppressPackageStartupMessages(library(stars)) 173s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 173s > r = read_stars(list(a = c(tif,tif), b = c(tif, tif)), proxy = TRUE) 173s > (xx = st_redimension(r, along = list(foo = 1:4))) 173s stars_proxy object with 1 attribute in 4 file(s): 173s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 173s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 173s [4] "[...]/L7_ETMs.tif" 173s 173s dimension(s): 173s from to offset delta refsys point x/y 173s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 173s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 173s band 1 6 NA NA NA NA 173s foo 1 4 1 1 NA NA 173s > (rr = c(xx, xx)) 173s stars_proxy object with 2 attributes in 8 file(s): 173s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 173s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 173s [4] "[...]/L7_ETMs.tif" 173s 173s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 173s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 173s [4] "[...]/L7_ETMs.tif" 173s 173s dimension(s): 173s from to offset delta refsys point x/y 173s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 173s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 173s band 1 6 NA NA NA NA 173s foo 1 4 1 1 NA NA 173s > # st_as_stars(rr) 173s > (rrr = st_redimension(rr, along = list(bar = as.Date(c("2001-01-01", "2002-01-01"))))) 173s stars_proxy object with 1 attribute in 8 file(s): 173s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif.a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 173s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 173s [4] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 173s [7] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 173s 173s dimension(s): 173s from to offset delta refsys point x/y 173s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 173s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 173s band 1 6 NA NA NA NA 173s foo 1 4 1 1 NA NA 173s bar 1 2 2001-01-01 365 days Date NA 173s > (rr = c(a = xx, b = xx)) 173s stars_proxy object with 2 attributes in 8 file(s): 173s $a 173s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 173s [4] "[...]/L7_ETMs.tif" 173s 173s $b 173s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 173s [4] "[...]/L7_ETMs.tif" 173s 173s dimension(s): 173s from to offset delta refsys point x/y 173s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 173s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 173s band 1 6 NA NA NA NA 173s foo 1 4 1 1 NA NA 173s > # st_as_stars(rr) 173s > (rrr = st_redimension(rr, along = list(bar = as.Date(c("2001-01-01", "2002-01-01"))))) 173s stars_proxy object with 1 attribute in 8 file(s): 173s $a.b 173s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 173s [4] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 173s [7] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 173s 173s dimension(s): 173s from to offset delta refsys point x/y 173s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 173s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 173s band 1 6 NA NA NA NA 173s foo 1 4 1 1 NA NA 173s bar 1 2 2001-01-01 365 days Date NA 173s > 173s BEGIN TEST sf.R 173s 173s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 173s Copyright (C) 2025 The R Foundation for Statistical Computing 173s Platform: x86_64-pc-linux-gnu 173s 173s R is free software and comes with ABSOLUTELY NO WARRANTY. 173s You are welcome to redistribute it under certain conditions. 173s Type 'license()' or 'licence()' for distribution details. 173s 173s R is a collaborative project with many contributors. 173s Type 'contributors()' for more information and 173s 'citation()' on how to cite R or R packages in publications. 173s 173s Type 'demo()' for some demos, 'help()' for on-line help, or 173s 'help.start()' for an HTML browser interface to help. 173s Type 'q()' to quit R. 173s 173s > suppressPackageStartupMessages(library(stars)) 173s > library(sf) 173s > #jp2 = system.file("jp2/B01.jp2", package = "stars") 173s > #(x = read_stars(jp2, options = c("OVERVIEW_LEVEL=3"))) 173s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 173s > #(x = read_stars(tif, options = c("OVERVIEW_LEVEL=3"))) # FIXME: breaks on windows 173s > (x = read_stars(tif)[,1:20,1:20]) 173s stars object with 3 dimensions and 1 attribute 173s attribute(s): 173s Min. 1st Qu. Median Mean 3rd Qu. Max. 173s L7_ETMs.tif 17 44 58 58.19667 70 130 173s dimension(s): 174s from to offset delta refsys point x/y 174s x 1 20 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 174s y 1 20 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 174s band 1 6 NA NA NA NA 174s > # names(x) = "L7_ETM" 174s > 174s > # library(abind) 174s > # x = adrop(x) 174s > image(x) 174s > (sfc = st_as_sfc(x, as_points = FALSE)) 174s Geometry set for 400 features 174s Geometry type: POLYGON 174s Dimension: XY 174s Bounding box: xmin: 288776.3 ymin: 9120191 xmax: 289346.3 ymax: 9120761 174s Projected CRS: SIRGAS 2000 / UTM zone 25S 174s First 5 geometries: 174s POLYGON ((288776.3 9120761, 288804.8 9120761, 2... 174s POLYGON ((288804.8 9120761, 288833.3 9120761, 2... 174s POLYGON ((288833.3 9120761, 288861.8 9120761, 2... 174s POLYGON ((288861.8 9120761, 288890.3 9120761, 2... 174s POLYGON ((288890.3 9120761, 288918.8 9120761, 2... 174s > plot(sfc, add =TRUE) 174s > (sfc = st_as_sfc(x, as_points = TRUE)) 174s Geometry set for 400 features 174s Geometry type: POINT 174s Dimension: XY 174s Bounding box: xmin: 288790.5 ymin: 9120205 xmax: 289332 ymax: 9120747 174s POINT (288790.5 9120747) 174s Projected CRS: SIRGAS 2000 / UTM zone 25S 174s First 5 geometries: 174s POINT (288819 9120747) 174s POINT (288847.5 9120747) 174s POINT (288876 9120747) 174s POINT (288904.5 9120747) 174s > plot(sfc, add = TRUE) 174s > 174s > sf = st_as_sf(x, as_points = FALSE) 174s > plot(sf, border = NA) 174s > sf = st_as_sf(x[,,,1], as_points = FALSE, merge = TRUE) 174s > plot(sf, border = NA) 174s > 174s > sfc1 <- st_as_sfc(x, as_points = TRUE, use_cpp = TRUE, na.rm = FALSE) 174s > sfc2 <- st_as_sfc(x, as_points = TRUE, use_cpp = FALSE) 174s > identical(sfc1, sfc2) 174s [1] TRUE 174s > 174s > sfc1 <- st_as_sfc(x, as_points = FALSE, use_cpp = TRUE, na.rm = FALSE) 174s > sfc2 <- st_as_sfc(x, as_points = FALSE, use_cpp = FALSE) 174s > identical(sfc1, sfc2) 174s [1] TRUE 174s > 174s > # sf -> stars -> sf 174s > x = st_sfc(st_point(0:1), st_point(1:2), st_point(2:3)) 174s > m = matrix(1:9,3) 174s > colnames(m) = c("a", "b", "c") 174s > foo = st_sf(m, geom = x) 174s > x = st_as_stars(foo) 174s > c(x) 174s stars object with 1 dimensions and 3 attributes 174s attribute(s): 174s Min. 1st Qu. Median Mean 3rd Qu. Max. 174s a 1 1.5 2 2 2.5 3 174s b 4 4.5 5 5 5.5 6 174s c 7 7.5 8 8 8.5 9 174s dimension(s): 174s from to point values 174s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 174s > st_redimension(x) 174s stars object with 2 dimensions and 1 attribute 174s attribute(s): 174s Min. 1st Qu. Median Mean 3rd Qu. Max. 174s a.b.c 1 3 5 5 7 9 174s dimension(s): 174s from to point values 174s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 174s new_dim 1 3 NA a, b, c 174s > c(x, x) 174s stars object with 1 dimensions and 6 attributes 174s attribute(s): 174s Min. 1st Qu. Median Mean 3rd Qu. Max. 174s a 1 1.5 2 2 2.5 3 174s b 4 4.5 5 5 5.5 6 174s c 7 7.5 8 8 8.5 9 174s a.1 1 1.5 2 2 2.5 3 174s b.1 4 4.5 5 5 5.5 6 174s c.1 7 7.5 8 8 8.5 9 174s dimension(s): 174s from to point values 174s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 174s > (y = st_redimension(x, along = list(time = as.Date("2017-11-27") + 0:2))) 174s stars object with 2 dimensions and 1 attribute 174s attribute(s): 174s Min. 1st Qu. Median Mean 3rd Qu. Max. 174s a.b.c 1 3 5 5 7 9 174s dimension(s): 174s from to offset delta refsys point values 174s geom 1 3 NA NA NA TRUE POINT (0 1),...,POINT (2 3) 174s time 1 3 2017-11-27 1 days Date NA NULL 174s > st_as_sf(y) 174s Simple feature collection with 3 features and 3 fields 174s Geometry type: POINT 174s Dimension: XY 174s Bounding box: xmin: 0 ymin: 1 xmax: 2 ymax: 3 174s CRS: NA 174s 2017-11-27 2017-11-28 2017-11-29 geom 174s 1 1 4 7 POINT (0 1) 174s 2 2 5 8 POINT (1 2) 174s 3 3 6 9 POINT (2 3) 174s > st_as_sf(st_as_stars(foo)) 174s Simple feature collection with 3 features and 3 fields 174s Geometry type: POINT 174s Dimension: XY 174s Bounding box: xmin: 0 ymin: 1 xmax: 2 ymax: 3 174s CRS: NA 174s a b c geom 174s 1 1 4 7 POINT (0 1) 174s 2 2 5 8 POINT (1 2) 174s 3 3 6 9 POINT (2 3) 174s > 174s > c(x,x,along=1) # NEEDS FIXING! 174s stars object with 1 dimensions and 3 attributes 174s attribute(s): 174s Min. 1st Qu. Median Mean 3rd Qu. Max. 174s a 1 1.25 2 2 2.75 3 174s b 4 4.25 5 5 5.75 6 174s c 7 7.25 8 8 8.75 9 174s dimension(s): 174s from to point values 174s geom 1 6 TRUE POINT (0 1),...,POINT (2 3) 174s > # st_as_stars.sfc 174s > st_as_stars(st_geometry(st_as_sf(y)), nx = 10, ny = 10, as_points = FALSE) 174s stars object with 2 dimensions and 1 attribute 174s attribute(s): 174s Min. 1st Qu. Median Mean 3rd Qu. Max. 174s values 0 0 0 0.06 0 1 174s dimension(s): 174s from to offset delta x/y 174s x 1 10 0 0.2 [x] 174s y 1 10 3 -0.2 [y] 174s > 174s BEGIN TEST sp.R 174s 174s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 174s Copyright (C) 2025 The R Foundation for Statistical Computing 174s Platform: x86_64-pc-linux-gnu 174s 174s R is free software and comes with ABSOLUTELY NO WARRANTY. 174s You are welcome to redistribute it under certain conditions. 174s Type 'license()' or 'licence()' for distribution details. 174s 174s R is a collaborative project with many contributors. 174s Type 'contributors()' for more information and 174s 'citation()' on how to cite R or R packages in publications. 174s 174s Type 'demo()' for some demos, 'help()' for on-line help, or 174s 'help.start()' for an HTML browser interface to help. 174s Type 'q()' to quit R. 174s 174s > options(rgdal_show_exportToProj4_warnings = "none") 174s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) { 174s + demo(meuse) 174s + # remove +init=xxx 174s + meuse@proj4string = CRS( 174s + "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs" 174s + ) 174s + meuse.grid@proj4string = CRS( 174s + "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs" 174s + ) 174s + 174s + suppressPackageStartupMessages(library(stars)) 174s + (m = st_as_stars(meuse)) 174s + (gr = st_as_stars(meuse.grid)) 174s + 174s + m2 = as(m, "Spatial") 174s + summary(m2) 174s + gr2 = as(gr, "Spatial") 174s + summary(gr2) 174s + 174s + all.equal(meuse, m2, check.attributes = FALSE) 174s + fullgrid(meuse.grid) = TRUE 174s + all.equal(meuse.grid, gr2, check.attributes = FALSE) 174s + 174s + #all.equal(meuse, m2) 174s + #all.equal(meuse.grid, gr2) 174s + } 174s 174s 174s demo(meuse) 174s ---- ~~~~~ 174s 174s > require(sp) 174s 174s > crs = CRS("EPSG:28992") 174s 174s > data("meuse") 174s 174s > coordinates(meuse) <- ~x+y 174s 174s > proj4string(meuse) <- crs 174s 174s > data("meuse.grid") 174s 174s > coordinates(meuse.grid) <- ~x+y 174s 174s > gridded(meuse.grid) <- TRUE 174s 174s > proj4string(meuse.grid) <- crs 174s 174s > data("meuse.riv") 174s 174s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 174s 174s > proj4string(meuse.riv) <- crs 174s 174s > data("meuse.area") 174s 174s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 174s 174s > proj4string(meuse.area) <- crs 174s [1] TRUE 174s > 174s BEGIN TEST spacetime.R 175s 175s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 175s Copyright (C) 2025 The R Foundation for Statistical Computing 175s Platform: x86_64-pc-linux-gnu 175s 175s R is free software and comes with ABSOLUTELY NO WARRANTY. 175s You are welcome to redistribute it under certain conditions. 175s Type 'license()' or 'licence()' for distribution details. 175s 175s R is a collaborative project with many contributors. 175s Type 'contributors()' for more information and 175s 'citation()' on how to cite R or R packages in publications. 175s 175s Type 'demo()' for some demos, 'help()' for on-line help, or 175s 'help.start()' for an HTML browser interface to help. 175s Type 'q()' to quit R. 175s 175s > suppressPackageStartupMessages(library(stars)) 175s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 175s + set.seed(1331) 175s + Sys.setenv(TZ="UTC") 175s + example(STFDF) 175s + 175s + x = st_as_stars(stfdf) 175s + xx = as(x, "STFDF") 175s + 175s + # as.xts.stars: 175s + library(xts) 175s + xts = as.xts(x) 175s + st_as_stars(xts) 175s + st_as_stars(xts, dimensions = st_dimensions(x)) 175s + 175s + library(sp) 175s + pts = SpatialPoints(rbind(c(0,0), c(0,1), c(1,0), c(1,1))) 175s + gridded(pts) = TRUE 175s + 175s + tm = xts(1:10, as.Date("2010-01-01")+0:9) 175s + stfdf = STFDF(pts, tm, data.frame(foo = seq_len(length(pts) * length(tm)))) 175s + x = st_as_stars(stfdf) 175s + xx = as(x, "STFDF") 175s + 175s + x = st_as_stars(as(stfdf, "STSDF")) 175s + } 175s 175s STFDF> sp = cbind(x = c(0,0,1), y = c(0,1,1)) 175s 175s STFDF> row.names(sp) = paste("point", 1:nrow(sp), sep="") 175s 175s STFDF> library(sp) 175s 175s STFDF> sp = SpatialPoints(sp) 175s 175s STFDF> time = as.POSIXct("2010-08-05")+3600*(10:13) 175s 175s STFDF> m = c(10,20,30) # means for each of the 3 point locations 175s 175s STFDF> mydata = rnorm(length(sp)*length(time),mean=rep(m, 4)) 175s 175s STFDF> IDs = paste("ID",1:length(mydata)) 175s 175s STFDF> mydata = data.frame(values = signif(mydata,3), ID=IDs) 175s 175s STFDF> stfdf = STFDF(sp, time, mydata) 175s 175s STFDF> stfdf 175s An object of class "STFDF" 175s Slot "data": 175s values ID 175s 1 9.38 ID 1 175s 2 21.10 ID 2 175s 3 29.80 ID 3 175s 4 11.50 ID 4 175s 5 19.80 ID 5 175s 6 31.20 ID 6 175s 7 10.40 ID 7 175s 8 20.50 ID 8 175s 9 29.80 ID 9 175s 10 10.30 ID 10 175s 11 21.40 ID 11 175s 12 29.40 ID 12 175s 175s Slot "sp": 175s SpatialPoints: 175s x y 175s point1 0 0 175s point2 0 1 175s point3 1 1 175s Coordinate Reference System (CRS) arguments: NA 175s 175s Slot "time": 175s timeIndex 175s 2010-08-05 10:00:00 1 175s 2010-08-05 11:00:00 2 175s 2010-08-05 12:00:00 3 175s 2010-08-05 13:00:00 4 175s 175s Slot "endTime": 175s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 175s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 175s 175s 175s STFDF> stfdf[1:2,] 175s An object of class "STFDF" 175s Slot "data": 175s values ID 175s 1 9.38 ID 1 175s 2 21.10 ID 2 175s 3 11.50 ID 4 175s 4 19.80 ID 5 175s 5 10.40 ID 7 175s 6 20.50 ID 8 175s 7 10.30 ID 10 175s 8 21.40 ID 11 175s 175s Slot "sp": 175s SpatialPoints: 175s x y 175s point1 0 0 175s point2 0 1 175s Coordinate Reference System (CRS) arguments: NA 175s 175s Slot "time": 175s timeIndex 175s 2010-08-05 10:00:00 1 175s 2010-08-05 11:00:00 2 175s 2010-08-05 12:00:00 3 175s 2010-08-05 13:00:00 4 175s 175s Slot "endTime": 175s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 175s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 175s 175s 175s STFDF> stfdf[,1:2] 175s An object of class "STFDF" 175s Slot "data": 175s values ID 175s 1 9.38 ID 1 175s 2 21.10 ID 2 175s 3 29.80 ID 3 175s 4 11.50 ID 4 175s 5 19.80 ID 5 175s 6 31.20 ID 6 175s 175s Slot "sp": 175s SpatialPoints: 175s x y 175s point1 0 0 175s point2 0 1 175s point3 1 1 175s Coordinate Reference System (CRS) arguments: NA 175s 175s Slot "time": 175s timeIndex 175s 2010-08-05 10:00:00 1 175s 2010-08-05 11:00:00 2 175s 175s Slot "endTime": 175s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 175s 175s 175s STFDF> stfdf[,,2] 175s An object of class "STFDF" 175s Slot "data": 175s ID 175s 1 ID 1 175s 2 ID 2 175s 3 ID 3 175s 4 ID 4 175s 5 ID 5 175s 6 ID 6 175s 7 ID 7 175s 8 ID 8 175s 9 ID 9 175s 10 ID 10 175s 11 ID 11 175s 12 ID 12 175s 175s Slot "sp": 175s SpatialPoints: 175s x y 175s point1 0 0 175s point2 0 1 175s point3 1 1 175s Coordinate Reference System (CRS) arguments: NA 175s 175s Slot "time": 175s timeIndex 175s 2010-08-05 10:00:00 1 175s 2010-08-05 11:00:00 2 175s 2010-08-05 12:00:00 3 175s 2010-08-05 13:00:00 4 175s 175s Slot "endTime": 175s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 175s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 175s 175s 175s STFDF> stfdf[,,"values"] 175s An object of class "STFDF" 175s Slot "data": 175s values 175s 1 9.38 175s 2 21.10 175s 3 29.80 175s 4 11.50 175s 5 19.80 175s 6 31.20 175s 7 10.40 175s 8 20.50 175s 9 29.80 175s 10 10.30 175s 11 21.40 175s 12 29.40 175s 175s Slot "sp": 175s SpatialPoints: 175s x y 175s point1 0 0 175s point2 0 1 175s point3 1 1 175s Coordinate Reference System (CRS) arguments: NA 175s 175s Slot "time": 175s timeIndex 175s 2010-08-05 10:00:00 1 175s 2010-08-05 11:00:00 2 175s 2010-08-05 12:00:00 3 175s 2010-08-05 13:00:00 4 175s 175s Slot "endTime": 175s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 175s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 175s 175s 175s STFDF> stfdf[1,] 175s values ID timeIndex 175s 2010-08-05 10:00:00 9.38 ID 1 1 175s 2010-08-05 11:00:00 11.50 ID 4 2 175s 2010-08-05 12:00:00 10.40 ID 7 3 175s 2010-08-05 13:00:00 10.30 ID 10 4 175s 175s STFDF> stfdf[,2] 175s coordinates values ID 175s 1 (0, 0) 11.5 ID 4 175s 2 (0, 1) 19.8 ID 5 175s 3 (1, 1) 31.2 ID 6 175s 175s STFDF> as(stfdf[,,1], "xts") 175s point1 point2 point3 175s 2010-08-05 10:00:00 9.38 21.1 29.8 175s 2010-08-05 11:00:00 11.50 19.8 31.2 175s 2010-08-05 12:00:00 10.40 20.5 29.8 175s 2010-08-05 13:00:00 10.30 21.4 29.4 175s 175s STFDF> as(stfdf[,,2], "xts") 175s point1 point2 point3 175s 2010-08-05 10:00:00 ID 1 ID 2 ID 3 175s 2010-08-05 11:00:00 ID 4 ID 5 ID 6 175s 2010-08-05 12:00:00 ID 7 ID 8 ID 9 175s 2010-08-05 13:00:00 ID 10 ID 11 ID 12 175s 175s STFDF> # examples for [[, [[<-, $ and $<- 175s STFDF> stfdf[[1]] 175s [1] 9.38 21.10 29.80 11.50 19.80 31.20 10.40 20.50 29.80 10.30 21.40 29.40 175s 175s STFDF> stfdf[["values"]] 175s [1] 9.38 21.10 29.80 11.50 19.80 31.20 10.40 20.50 29.80 10.30 21.40 29.40 175s 175s STFDF> stfdf[["newVal"]] <- rnorm(12) 175s 175s STFDF> stfdf$ID 175s [1] "ID 1" "ID 2" "ID 3" "ID 4" "ID 5" "ID 6" "ID 7" "ID 8" "ID 9" 175s [10] "ID 10" "ID 11" "ID 12" 175s 175s STFDF> stfdf$ID = paste("OldIDs", 1:12, sep="") 175s 175s STFDF> stfdf$NewID = paste("NewIDs", 12:1, sep="") 175s 175s STFDF> stfdf 175s An object of class "STFDF" 175s Slot "data": 175s values ID newVal NewID 175s 1 9.38 OldIDs1 -0.3125824 NewIDs12 175s 2 21.10 OldIDs2 -1.0536246 NewIDs11 175s 3 29.80 OldIDs3 -0.7188880 NewIDs10 175s 4 11.50 OldIDs4 -1.0525404 NewIDs9 175s 5 19.80 OldIDs5 -0.8441413 NewIDs8 175s 6 31.20 OldIDs6 1.1420848 NewIDs7 175s 7 10.40 OldIDs7 1.9479070 NewIDs6 175s 8 20.50 OldIDs8 -0.4512836 NewIDs5 175s 9 29.80 OldIDs9 0.6695716 NewIDs4 175s 10 10.30 OldIDs10 0.1269003 NewIDs3 175s 11 21.40 OldIDs11 -0.7273297 NewIDs2 175s 12 29.40 OldIDs12 -0.8151803 NewIDs1 175s 175s Slot "sp": 175s SpatialPoints: 175s x y 175s point1 0 0 175s point2 0 1 175s point3 1 1 175s Coordinate Reference System (CRS) arguments: NA 175s 175s Slot "time": 175s timeIndex 175s 2010-08-05 10:00:00 1 175s 2010-08-05 11:00:00 2 175s 2010-08-05 12:00:00 3 175s 2010-08-05 13:00:00 4 175s 175s Slot "endTime": 175s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 175s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 175s 175s 175s STFDF> x = stfdf[stfdf[1:2,],] 175s 175s STFDF> all.equal(x, stfdf[1:2,]) 175s [1] TRUE 175s 175s STFDF> all.equal(stfdf, stfdf[stfdf,]) # converts character to factor... 175s [1] TRUE 175s Loading required package: zoo 175s 175s Attaching package: 'zoo' 175s 175s The following objects are masked from 'package:base': 175s 175s as.Date, as.Date.numeric 175s 175s only the first attribute will used; maybe use merge() first? 175s > 175s BEGIN TEST spatstat.R 175s 175s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 175s Copyright (C) 2025 The R Foundation for Statistical Computing 175s Platform: x86_64-pc-linux-gnu 175s 175s R is free software and comes with ABSOLUTELY NO WARRANTY. 175s You are welcome to redistribute it under certain conditions. 175s Type 'license()' or 'licence()' for distribution details. 175s 175s R is a collaborative project with many contributors. 175s Type 'contributors()' for more information and 175s 'citation()' on how to cite R or R packages in publications. 175s 175s Type 'demo()' for some demos, 'help()' for on-line help, or 175s 'help.start()' for an HTML browser interface to help. 175s Type 'q()' to quit R. 175s 175s > suppressPackageStartupMessages(library(sf)) 176s Loading required package: abind 176s > 176s > library(stars) 176s > if (suppressPackageStartupMessages(require(spatstat.geom, quietly = TRUE))) { 176s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 176s + s = adrop(read_stars(tif)[,,,1]) > 70 176s + plot(s) 176s + m = as.owin(s) 176s + plot(m) 176s + print(table(m$m)) 176s + } 176s 176s FALSE TRUE 176s 39494 83354 176s > 176s BEGIN TEST stars.R 177s 177s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 177s Copyright (C) 2025 The R Foundation for Statistical Computing 177s Platform: x86_64-pc-linux-gnu 177s 177s R is free software and comes with ABSOLUTELY NO WARRANTY. 177s You are welcome to redistribute it under certain conditions. 177s Type 'license()' or 'licence()' for distribution details. 177s 177s R is a collaborative project with many contributors. 177s Type 'contributors()' for more information and 177s 'citation()' on how to cite R or R packages in publications. 177s 177s Type 'demo()' for some demos, 'help()' for on-line help, or 177s 'help.start()' for an HTML browser interface to help. 177s Type 'q()' to quit R. 177s 177s > Sys.setenv(TZ="UTC") 177s > suppressPackageStartupMessages(library(stars)) 177s > set.seed(13521) # runif 177s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 177s > (x_ = read_stars(c(tif,tif))) # FIXME: not what you'd expect 177s stars object with 3 dimensions and 2 attributes 177s attribute(s): 177s Min. 1st Qu. Median Mean 3rd Qu. Max. 177s L7_ETMs.tif 1 54 69 68.91242 86 255 177s L7_ETMs.tif.1 1 54 69 68.91242 86 255 177s dimension(s): 177s from to offset delta refsys point x/y 177s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 177s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 177s band 1 6 NA NA NA NA 177s > (x = read_stars(tif)) 177s stars object with 3 dimensions and 1 attribute 177s attribute(s): 177s Min. 1st Qu. Median Mean 3rd Qu. Max. 177s L7_ETMs.tif 1 54 69 68.91242 86 255 177s dimension(s): 177s from to offset delta refsys point x/y 177s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 177s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 177s band 1 6 NA NA NA NA 177s > # image(x) 177s > gdal_crs(tif) 177s Coordinate Reference System: 177s User input: PROJCS["SIRGAS 2000 / UTM zone 25S",GEOGCS["SIRGAS 2000",DATUM["Sistema_de_Referencia_Geocentrico_para_las_AmericaS_2000",SPHEROID["GRS 1980",6378137,298.257222101,AUTHORITY["EPSG","7019"]],AUTHORITY["EPSG","6674"]],PRIMEM["Greenwich",0,AUTHORITY["EPSG","8901"]],UNIT["degree",0.0174532925199433,AUTHORITY["EPSG","9122"]],AUTHORITY["EPSG","4674"]],PROJECTION["Transverse_Mercator"],PARAMETER["latitude_of_origin",0],PARAMETER["central_meridian",-33],PARAMETER["scale_factor",0.9996],PARAMETER["false_easting",500000],PARAMETER["false_northing",10000000],UNIT["metre",1,AUTHORITY["EPSG","9001"]],AXIS["Easting",EAST],AXIS["Northing",NORTH],AUTHORITY["EPSG","31985"]] 177s wkt: 177s PROJCRS["SIRGAS 2000 / UTM zone 25S", 177s BASEGEOGCRS["SIRGAS 2000", 177s DATUM["Sistema de Referencia Geocentrico para las AmericaS 2000", 177s ELLIPSOID["GRS 1980",6378137,298.257222101, 177s LENGTHUNIT["metre",1]]], 177s PRIMEM["Greenwich",0, 177s ANGLEUNIT["degree",0.0174532925199433]], 177s ID["EPSG",4674]], 177s CONVERSION["UTM zone 25S", 177s METHOD["Transverse Mercator", 177s ID["EPSG",9807]], 177s PARAMETER["Latitude of natural origin",0, 177s ANGLEUNIT["degree",0.0174532925199433], 177s ID["EPSG",8801]], 177s PARAMETER["Longitude of natural origin",-33, 177s ANGLEUNIT["degree",0.0174532925199433], 177s ID["EPSG",8802]], 177s PARAMETER["Scale factor at natural origin",0.9996, 177s SCALEUNIT["unity",1], 177s ID["EPSG",8805]], 177s PARAMETER["False easting",500000, 177s LENGTHUNIT["metre",1], 177s ID["EPSG",8806]], 177s PARAMETER["False northing",10000000, 177s LENGTHUNIT["metre",1], 177s ID["EPSG",8807]]], 177s CS[Cartesian,2], 177s AXIS["easting",east, 177s ORDER[1], 177s LENGTHUNIT["metre",1]], 177s AXIS["northing",north, 177s ORDER[2], 177s LENGTHUNIT["metre",1]], 177s ID["EPSG",31985]] 177s > plot(x) 177s > plot(x, join_zlim = FALSE) 177s > x %>% st_set_dimensions(names = c('a', 'b', 'c')) 177s stars object with 3 dimensions and 1 attribute 177s attribute(s): 178s Min. 1st Qu. Median Mean 3rd Qu. Max. 178s L7_ETMs.tif 1 54 69 68.91242 86 255 178s dimension(s): 178s from to offset delta refsys point x/y 178s a 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 178s b 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 178s c 1 6 NA NA NA NA 178s > st_get_dimension_values(x, 3) 178s [1] 1 2 3 4 5 6 178s > 178s > (x1 = st_set_dimensions(x, "band", values = c(1,2,3,4,5,7), names = "band_number", point = TRUE)) 178s stars object with 3 dimensions and 1 attribute 178s attribute(s): 178s Min. 1st Qu. Median Mean 3rd Qu. Max. 178s L7_ETMs.tif 1 54 69 68.91242 86 255 178s dimension(s): 178s from to offset delta refsys point values x/y 178s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 178s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 178s band_number 1 6 NA NA NA TRUE 1,...,7 178s > rbind(c(0.45,0.515), c(0.525,0.605), c(0.63,0.69), c(0.775,0.90), c(1.55,1.75), c(2.08,2.35)) %>% 178s + units::set_units(um) -> bw # units::set_units(µm) -> bw 178s > # set bandwidth midpoint: 178s > (x2 = st_set_dimensions(x, "band", values = 0.5 * (bw[,1]+bw[,2]), 178s + names = "bandwidth_midpoint", point = TRUE)) 178s stars object with 3 dimensions and 1 attribute 178s attribute(s): 178s Min. 1st Qu. Median Mean 3rd Qu. Max. 178s L7_ETMs.tif 1 54 69 68.91242 86 255 178s dimension(s): 178s from to offset delta refsys point 178s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 178s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 178s bandwidth_midpoint 1 6 NA NA udunits TRUE 178s values x/y 178s x NULL [x] 178s y NULL [y] 178s bandwidth_midpoint 0.4825 [um],...,2.215 [um] 178s > # set bandwidth intervals: 178s > (x3 = st_set_dimensions(x, "band", values = make_intervals(bw), names = "bandwidth")) 178s stars object with 3 dimensions and 1 attribute 178s attribute(s): 178s Min. 1st Qu. Median Mean 3rd Qu. Max. 178s L7_ETMs.tif 1 54 69 68.91242 86 255 178s dimension(s): 178s from to offset delta refsys point 178s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 178s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 178s bandwidth 1 6 NA NA udunits NA 178s values x/y 178s x NULL [x] 178s y NULL [y] 178s bandwidth [0.45,0.515) [um],...,[2.08,2.35) [um] 178s > 178s > x + x 178s stars object with 3 dimensions and 1 attribute 178s attribute(s): 178s Min. 1st Qu. Median Mean 3rd Qu. Max. 178s L7_ETMs.tif 2 108 138 137.8248 172 510 178s dimension(s): 178s from to offset delta refsys point x/y 178s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 178s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 178s band 1 6 NA NA NA NA 178s > x * x 178s stars object with 3 dimensions and 1 attribute 178s attribute(s): 178s Min. 1st Qu. Median Mean 3rd Qu. Max. 178s L7_ETMs.tif 1 2916 4761 5512.41 7396 65025 178s dimension(s): 178s from to offset delta refsys point x/y 178s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 178s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 178s band 1 6 NA NA NA NA 178s > x[,,,1:3] 178s stars object with 3 dimensions and 1 attribute 178s attribute(s): 178s Min. 1st Qu. Median Mean 3rd Qu. Max. 178s L7_ETMs.tif 21 58 70 70.36041 83 255 178s dimension(s): 178s from to offset delta refsys point x/y 178s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 178s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 178s band 1 3 NA NA NA NA 178s > x[,1:100,100:200,] 178s stars object with 3 dimensions and 1 attribute 178s attribute(s): 178s Min. 1st Qu. Median Mean 3rd Qu. Max. 178s L7_ETMs.tif 13 54 65 67.21531 77 252 178s dimension(s): 178s from to offset delta refsys point x/y 178s x 1 100 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 178s y 100 200 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 178s band 1 6 NA NA NA NA 178s > sqrt(x) 178s stars object with 3 dimensions and 1 attribute 178s attribute(s): 178s Min. 1st Qu. Median Mean 3rd Qu. Max. 178s L7_ETMs.tif 1 7.348469 8.306624 8.094006 9.273618 15.96872 178s dimension(s): 178s from to offset delta refsys point x/y 178s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 178s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 178s band 1 6 NA NA NA NA 178s > st_apply(x, 3, min) 178s stars object with 1 dimensions and 1 attribute 178s attribute(s): 178s Min. 1st Qu. Median Mean 3rd Qu. Max. 178s min 1 3 15 18.5 29.25 47 178s dimension(s): 178s from to 178s band 1 6 178s > st_apply(x, 1:2, max) 178s stars object with 2 dimensions and 1 attribute 178s attribute(s): 178s Min. 1st Qu. Median Mean 3rd Qu. Max. 178s max 55 85 96 99.36018 113 255 178s dimension(s): 178s from to offset delta refsys point x/y 178s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 178s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 178s > st_apply(x, 1:2, range) 178s stars object with 3 dimensions and 1 attribute 178s attribute(s): 178s Min. 1st Qu. Median Mean 3rd Qu. Max. 178s L7_ETMs.tif 1 50 71 72.43565 96 255 178s dimension(s): 178s from to offset delta refsys point x/y 178s range 1 2 NA NA NA NA 178s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 178s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 178s > 178s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 178s > x = read_stars(geomatrix) 178s > y = st_transform(x, st_crs(4326)) 178s > st_coordinates(x)[1:2,] 178s x y 178s 1 1841000 1144000 178s 2 1841002 1143995 178s > 178s > nc = system.file("nc/tos_O1_2001-2002.nc", package = "stars") 178s > if (nc != "" && require(PCICt, quietly = TRUE)) { 178s + print(x <- read_stars(nc)) 178s + print(st_bbox(x)) 178s + s = st_as_stars(st_bbox(x)) # inside = NA 178s + print(st_bbox(s)) 178s + s = st_as_stars(st_bbox(x), inside = TRUE) 178s + print(st_bbox(s)) 178s + s = st_as_stars(st_bbox(x), inside = FALSE) 178s + print(st_bbox(s)) 178s + (s = st_as_stars(st_bbox(x), dy = 1)) 178s + print(st_bbox(s)) 178s + print(identical(st_as_stars(st_bbox(x), dx = 1), st_as_stars(st_bbox(x), dy = 1))) 178s + s = st_as_stars(st_bbox(x), dx = 10) 178s + print(st_bbox(s)) 178s + s = st_as_stars(st_bbox(x), dx = 20) 178s + print(st_bbox(s)) 178s + x1 = x 178s + st_crs(x1) = "OGC:CRS84" 178s + print(identical(st_as_stars(st_bbox(x1), dx = 1), st_as_stars(st_bbox(x1), dx = units::set_units(1, degree)))) 178s + 178s + df = as.data.frame(x) 178s + if (require(units, quietly = TRUE)) 178s + print(units::drop_units(x)) 178s + 178s + print(dimnames(x)) 178s + dimnames(x) <- letters[1:3] 178s + print(dimnames(x)) 178s + } # PCICt 178s > 178s > st_as_stars() 178s stars object with 2 dimensions and 1 attribute 178s attribute(s): 178s Min. 1st Qu. Median Mean 3rd Qu. Max. 178s values 0 0 0 0 0 0 178s dimension(s): 178s from to offset delta refsys x/y 179s x 1 360 -180 1 WGS 84 (CRS84) [x] 179s y 1 180 90 -1 WGS 84 (CRS84) [y] 179s > 179s > # multiple sub-datasets: 179s > nc_red = system.file("nc/reduced.nc", package = "stars") 179s > red = read_stars(nc_red) 179s sst, anom, err, ice, 179s > red 179s stars object with 4 dimensions and 4 attributes 179s attribute(s): 179s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 179s sst [degree_Celsius] -1.80 -0.03 13.655 12.9940841 24.8125 32.97 4448 179s anom [degree_Celsius] -10.16 -0.58 -0.080 -0.1855812 0.2100 2.99 4448 179s err [degree_Celsius] 0.11 0.16 0.270 0.2626872 0.3200 0.84 4448 179s ice [percent] 0.01 0.47 0.920 0.7178118 0.9600 1.00 13266 179s dimension(s): 179s from to offset delta refsys x/y 179s x 1 180 -1 2 NA [x] 179s y 1 90 90 -2 NA [y] 179s zlev 1 1 0 [m] NA NA 179s time 1 1 1981-12-31 UTC NA POSIXct 179s > plot(red) 179s > 179s > x = st_xy2sfc(read_stars(tif)[,1:10,1:10,], as_points = FALSE) 179s > st_bbox(x) 179s xmin ymin xmax ymax 179s 288776.3 9120475.8 289061.3 9120760.8 179s > x = read_stars(tif) 179s > merge(split(x, "band")) 179s stars object with 3 dimensions and 1 attribute 179s attribute(s): 179s Min. 1st Qu. Median Mean 3rd Qu. Max. 179s X1.X2.X3.X4.X5.X6 1 54 69 68.91242 86 255 179s dimension(s): 179s from to offset delta refsys point values 179s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 179s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 179s attributes 1 6 NA NA NA NA X1,...,X6 179s x/y 179s x [x] 179s y [y] 179s attributes 179s > 179s > read_stars(c(tif,tif)) # merges as attributes 179s stars object with 3 dimensions and 2 attributes 179s attribute(s): 179s Min. 1st Qu. Median Mean 3rd Qu. Max. 179s L7_ETMs.tif 1 54 69 68.91242 86 255 179s L7_ETMs.tif.1 1 54 69 68.91242 86 255 179s dimension(s): 179s from to offset delta refsys point x/y 179s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 179s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 179s band 1 6 NA NA NA NA 179s > read_stars(c(tif,tif), along = "sensor") 179s stars object with 4 dimensions and 1 attribute 179s attribute(s), summary of first 1e+05 cells: 179s Min. 1st Qu. Median Mean 3rd Qu. Max. 179s L7_ETMs.tif 47 65 76 77.3419 87 255 179s dimension(s): 179s from to offset delta refsys point x/y 179s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 179s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 179s band 1 6 NA NA NA NA 179s sensor 1 2 NA NA NA NA 179s > read_stars(c(tif,tif), along = 4) 179s stars object with 4 dimensions and 1 attribute 179s attribute(s), summary of first 1e+05 cells: 179s Min. 1st Qu. Median Mean 3rd Qu. Max. 179s L7_ETMs.tif 47 65 76 77.3419 87 255 179s dimension(s): 179s from to offset delta refsys point x/y 179s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 179s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 179s band 1 6 NA NA NA NA 179s new_dim 1 2 NA NA NA NA 179s > read_stars(c(tif,tif), along = "band") 180s stars object with 3 dimensions and 1 attribute 180s attribute(s), summary of first 1e+05 cells: 180s Min. 1st Qu. Median Mean 3rd Qu. Max. 180s L7_ETMs.tif 47 65 76 77.3419 87 255 180s dimension(s): 180s from to offset delta refsys point x/y 180s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 180s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 180s band 1 12 NA NA NA NA 180s > read_stars(c(tif,tif), along = 3) 180s stars object with 3 dimensions and 1 attribute 180s attribute(s), summary of first 1e+05 cells: 180s Min. 1st Qu. Median Mean 3rd Qu. Max. 180s L7_ETMs.tif 47 65 76 77.3419 87 255 180s dimension(s): 180s from to offset delta refsys point x/y 180s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 180s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 180s band 1 12 NA NA NA NA 180s > 180s > # cut: 180s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 180s > x = read_stars(tif) 180s > cut(x, c(0, 50, 100, 255)) 180s stars object with 3 dimensions and 1 attribute 180s attribute(s): 180s L7_ETMs.tif 180s (0,50] :156060 180s (50,100] :503764 180s (100,255]: 77264 180s dimension(s): 180s from to offset delta refsys point x/y 180s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 180s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 180s band 1 6 NA NA NA NA 180s > cut(x[,,,1,drop=TRUE], c(0, 50, 100, 255)) 180s stars object with 2 dimensions and 1 attribute 180s attribute(s): 180s L7_ETMs.tif 180s (0,50] : 1 180s (50,100] :117134 180s (100,255]: 5713 180s dimension(s): 180s from to offset delta refsys point x/y 180s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 180s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 180s > plot(cut(x[,,,1,drop=TRUE], c(0, 50, 100, 255))) 180s > 180s > st_bbox(st_dimensions(x)) 180s xmin ymin xmax ymax 180s 288776.3 9110728.8 298722.8 9120760.8 180s > x[x < 0] = NA 180s > x[is.na(x)] = 0 180s > 180s > # c: 180s > f = system.file("netcdf/avhrr-only-v2.19810902.nc", package = "starsdata") 180s > if (FALSE && f != "") { 180s + files = c("avhrr-only-v2.19810901.nc", 180s + "avhrr-only-v2.19810902.nc", 180s + "avhrr-only-v2.19810903.nc", 180s + "avhrr-only-v2.19810904.nc", 180s + "avhrr-only-v2.19810905.nc", 180s + "avhrr-only-v2.19810906.nc", 180s + "avhrr-only-v2.19810907.nc", 180s + "avhrr-only-v2.19810908.nc", 180s + "avhrr-only-v2.19810909.nc") 180s + l = list() 180s + for (f in files) { 180s + from = system.file(paste0("netcdf/", f), package = "starsdata") 180s + l[[f]] = read_stars(from, sub = c("sst", "anom")) 180s + } 180s + ret = do.call(c, l) 180s + print(ret) 180s + ret = adrop(c(l[[1]], l[[2]], l[[3]], along = list(times = as.Date("1981-09-01") + 0:2))) 180s + print(ret) 180s + #ret = adrop(adrop(c(l[[1]], l[[2]], l[[3]], along = "times"))) 180s + #print(ret) 180s + } 180s > 180s > st_dimensions(list(matrix(1, 4, 4))) # st_dimensions.default 180s from to point values 180s X1 1 1 FALSE 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 180s > 180s > if (FALSE && require("starsdata", quietly = TRUE)) { 180s + # curvilinear: 180s + s5p = system.file( 180s + "sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", 180s + package = "starsdata") 180s + print(s5p) 180s + lat_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/latitude") 180s + lon_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/longitude") 180s + nit_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column") 180s + lat = read_stars(lat_ds) 180s + lon = read_stars(lon_ds) 180s + nit = read_stars(nit_ds) 180s + nit[[1]][nit[[1]] > 9e+36] = NA 180s + 180s + ll = setNames(c(lon, lat), c("x", "y")) 180s + nit.c = st_as_stars(nit, curvilinear = ll) 180s + print(nit.c) 180s + 180s + s5p = system.file( 180s + "sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", 180s + package = "starsdata") 180s + nit.c2 = read_stars(s5p, 180s + sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 180s + curvilinear = c("//PRODUCT/latitude", "//PRODUCT/longitude")) 180s + print(all.equal(nit.c, nit.c2)) 180s + } 180s > 180s BEGIN TEST subset.R 180s 180s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 180s Copyright (C) 2025 The R Foundation for Statistical Computing 180s Platform: x86_64-pc-linux-gnu 180s 180s R is free software and comes with ABSOLUTELY NO WARRANTY. 180s You are welcome to redistribute it under certain conditions. 180s Type 'license()' or 'licence()' for distribution details. 180s 180s R is a collaborative project with many contributors. 180s Type 'contributors()' for more information and 180s 'citation()' on how to cite R or R packages in publications. 180s 180s Type 'demo()' for some demos, 'help()' for on-line help, or 180s 'help.start()' for an HTML browser interface to help. 180s Type 'q()' to quit R. 180s 180s > suppressPackageStartupMessages(library(stars)) 180s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 180s > x = read_stars(tif) 180s > y = st_set_dimensions(x, "band", point = TRUE) 180s > y[,1:10, 1:10, c(1,4,3,2)] 180s stars object with 3 dimensions and 1 attribute 180s attribute(s): 180s Min. 1st Qu. Median Mean 3rd Qu. Max. 180s L7_ETMs.tif 25 45 57 56.535 64 97 180s dimension(s): 180s from to offset delta refsys point values x/y 180s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 180s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 180s band 1 4 NA NA NA TRUE 1,...,2 180s > y = st_set_dimensions(x, "band", point = NA) 180s > y[,1:10, 1:10, c(1,4,3,2)] 180s stars object with 3 dimensions and 1 attribute 180s attribute(s): 180s Min. 1st Qu. Median Mean 3rd Qu. Max. 180s L7_ETMs.tif 25 45 57 56.535 64 97 180s dimension(s): 180s from to offset delta refsys point values x/y 180s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 180s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 180s band 1 4 NA NA NA NA [1,2),...,[2,3) 180s > y = st_set_dimensions(x, "band", point = FALSE) 180s > y[,1:10, 1:10, c(1,4,3,2)] 180s stars object with 3 dimensions and 1 attribute 180s attribute(s): 180s Min. 1st Qu. Median Mean 3rd Qu. Max. 180s L7_ETMs.tif 25 45 57 56.535 64 97 180s dimension(s): 180s from to offset delta refsys point values x/y 180s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 180s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 180s band 1 4 NA NA NA FALSE [1,2),...,[2,3) 180s > y = st_set_dimensions(x, "band", values = letters[1:6]) 180s > y[,1:10, 1:10, c(1,4,3,2)] 180s stars object with 3 dimensions and 1 attribute 180s attribute(s): 180s Min. 1st Qu. Median Mean 3rd Qu. Max. 180s L7_ETMs.tif 25 45 57 56.535 64 97 180s dimension(s): 180s from to offset delta refsys point values x/y 180s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 180s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 180s band 1 4 NA NA NA NA a,...,b 180s > y = st_set_dimensions(x, "band", values = letters[1:6], point = NA) 180s > y[,1:10, 1:10, c(1,4,3,2)] 180s stars object with 3 dimensions and 1 attribute 180s attribute(s): 180s Min. 1st Qu. Median Mean 3rd Qu. Max. 180s L7_ETMs.tif 25 45 57 56.535 64 97 180s dimension(s): 180s from to offset delta refsys point values x/y 180s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 180s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 180s band 1 4 NA NA NA NA a,...,b 180s > y = st_set_dimensions(x, "band", values = letters[1:6], point = TRUE) 180s > y[,1:10, 1:10, c(1,4,3,2)] 180s stars object with 3 dimensions and 1 attribute 180s attribute(s): 180s Min. 1st Qu. Median Mean 3rd Qu. Max. 180s L7_ETMs.tif 25 45 57 56.535 64 97 180s dimension(s): 180s from to offset delta refsys point values x/y 180s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 180s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 180s band 1 4 NA NA NA TRUE a,...,b 180s > 180s BEGIN TEST testthat.R 180s 180s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 180s Copyright (C) 2025 The R Foundation for Statistical Computing 180s Platform: x86_64-pc-linux-gnu 180s 180s R is free software and comes with ABSOLUTELY NO WARRANTY. 180s You are welcome to redistribute it under certain conditions. 180s Type 'license()' or 'licence()' for distribution details. 180s 180s R is a collaborative project with many contributors. 180s Type 'contributors()' for more information and 180s 'citation()' on how to cite R or R packages in publications. 180s 180s Type 'demo()' for some demos, 'help()' for on-line help, or 180s 'help.start()' for an HTML browser interface to help. 180s Type 'q()' to quit R. 180s 180s > ## load dependencies 180s > library(testthat) 181s > suppressPackageStartupMessages(library(stars)) 181s > 181s > ## test package 181s > test_check("stars") 185s [ FAIL 0 | WARN 0 | SKIP 5 | PASS 69 ] 185s 185s == Skipped tests (5) =========================================================== 185s * On CRAN (4): 'test-OpenStreetMap.R:2:3', 'test-ncdf.R:1:1', 185s 'test-ncproxy.R:1:1', 'test-rectilinear.R:89:3' 185s * {cubble} is not installed (1): 'test-cubble.R:2:3' 185s 185s [ FAIL 0 | WARN 0 | SKIP 5 | PASS 69 ] 185s > 185s BEGIN TEST tidy.R 185s 185s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 185s Copyright (C) 2025 The R Foundation for Statistical Computing 185s Platform: x86_64-pc-linux-gnu 185s 185s R is free software and comes with ABSOLUTELY NO WARRANTY. 185s You are welcome to redistribute it under certain conditions. 185s Type 'license()' or 'licence()' for distribution details. 185s 185s R is a collaborative project with many contributors. 185s Type 'contributors()' for more information and 185s 'citation()' on how to cite R or R packages in publications. 185s 185s Type 'demo()' for some demos, 'help()' for on-line help, or 185s 'help.start()' for an HTML browser interface to help. 185s Type 'q()' to quit R. 185s 185s > suppressPackageStartupMessages(library(stars)) 186s > 186s > if (require(dplyr, quietly = TRUE)) { 186s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 186s + x <- read_stars(tif) 186s + (y <- x %>% select(L7_ETMs.tif)) 186s + (y <- x %>% filter(band > 2)) 186s + (z <- x %>% mutate(foo = 2* L7_ETMs.tif)) 186s + x %>% pull(L7_ETMs.tif) %>% class() 186s + x %>% filter(x > 289900) 186s + x %>% slice("x", 50:100) 186s + 186s + suppressPackageStartupMessages(library(ggplot2)) 186s + ggplot() + geom_stars(data = x) + coord_equal() + facet_wrap(~band) 186s + ggplot() + geom_stars(data = x[,c(1:50,52:100),c(1:45, 50:60)]) + 186s + coord_equal() 186s + ggplot() + geom_stars(data = x[,1:10,1:10,1:2], sf = TRUE) + facet_wrap(~band) 186s + 186s + 186s + # see https://github.com/r-spatial/stars/issues/539 : 186s + x <- read_stars(system.file("tif/L7_ETMs.tif", package = "stars")) 186s + y <- transmute(x, L7_ETMs.tif = units::set_units(L7_ETMs.tif, degree_C)) # same as x but with units 186s + 186s + x - slice(x, 'band', 1) # runs as expected, recycling the second object 186s + try(y - slice(x, 'band', 1)) # fails as expected because x is unitless 186s + try(x - slice(y, 'band', 1)) # fails as expected 186s + y - slice(y, 'band', 1) # runs as expected 186s + } 186s 186s Attaching package: 'dplyr' 186s 186s The following objects are masked from 'package:stats': 186s 186s filter, lag 186s 186s The following objects are masked from 'package:base': 186s 186s intersect, setdiff, setequal, union 186s 186s Error in Ops.units(X[[i]], ...) : 186s both operands of the expression should be "units" objects 186s Error in Ops.units(X[[i]], ...) : 186s both operands of the expression should be "units" objects 186s stars object with 3 dimensions and 1 attribute 186s attribute(s): 186s Min. 1st Qu. Median Mean 3rd Qu. Max. 186s L7_ETMs.tif [degree_Celsius] -184 -19 -8 -10.2353 0 131 186s dimension(s): 186s from to offset delta refsys point x/y 186s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 186s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 186s band 1 6 NA NA NA NA 186s > 186s BEGIN TEST transform.R 187s 187s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 187s Copyright (C) 2025 The R Foundation for Statistical Computing 187s Platform: x86_64-pc-linux-gnu 187s 187s R is free software and comes with ABSOLUTELY NO WARRANTY. 187s You are welcome to redistribute it under certain conditions. 187s Type 'license()' or 'licence()' for distribution details. 187s 187s R is a collaborative project with many contributors. 187s Type 'contributors()' for more information and 187s 'citation()' on how to cite R or R packages in publications. 187s 187s Type 'demo()' for some demos, 'help()' for on-line help, or 187s 'help.start()' for an HTML browser interface to help. 187s Type 'q()' to quit R. 187s 187s > suppressPackageStartupMessages(library(stars)) 187s > #suppressPackageStartupMessages(library(lwgeom)) 187s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 187s > (x = read_stars(geomatrix)) 187s stars object with 2 dimensions and 1 attribute 187s attribute(s): 187s Min. 1st Qu. Median Mean 3rd Qu. Max. 187s geomatrix.tif 74 107 123 126.765 132 255 187s dimension(s): 187s from to offset delta refsys point x/y 187s x 1 20 1841002 1.5 WGS 84 / UTM zone 11N TRUE [x] 187s y 1 20 1144003 -1.5 WGS 84 / UTM zone 11N TRUE [y] 187s sheared raster with parameters: -5 -5 187s > new = st_crs(4326) 187s > y = st_transform(x, new) 187s > plot(st_transform(st_as_sfc(st_bbox(x)), new), col = NA, border = 'red') 187s > plot(st_as_sfc(y, as_points=FALSE), col = NA, border = 'green', axes = TRUE, add = TRUE) 187s > image(y, add = TRUE) 187s > plot(st_as_sfc(y, as_points=TRUE), pch=3, cex=.5, col = 'blue', add = TRUE) 187s > plot(st_transform(st_as_sfc(x, as_points=FALSE), new), add = TRUE) 187s > 187s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 187s > x = read_stars(tif)[,1:10,1:10,1:3] 187s > x_ = st_transform(x, st_crs(4326)) 187s > ## IGNORE_RDIFF_BEGIN 187s > if (require(lwgeom, quietly = TRUE)) { 187s + x__ = st_transform_proj(x, st_crs(4326)$proj4string) 187s + st_crs(x_) = st_crs(x__) 187s + print(all.equal(x_,x__)) 187s + 187s + # x__ = st_transform(x, x_) #now in st_warp 187s + # all.equal(x_, x__) 187s + 187s + x = st_xy2sfc(x, as_points = FALSE) 187s + (x_ = st_transform(x, st_crs(4326))) 187s + (x__ = st_transform_proj(x, st_crs(4326))) 187s + print(all.equal(x_,x__,check.attributes = FALSE)) 187s + } 187s Linking to liblwgeom 3.0.0beta1 r16016, GEOS 3.13.0, PROJ 9.5.1 187s 187s Attaching package: 'lwgeom' 187s 187s The following objects are masked from 'package:sf': 187s 187s st_minimum_bounding_circle, st_perimeter 187s 187s [1] TRUE 187s [1] TRUE 187s Warning messages: 187s 1: In fun(libname, pkgname) : 187s GEOS versions differ: lwgeom has 3.13.0 sf has 3.14.1 187s 2: In fun(libname, pkgname) : 187s PROJ versions differ: lwgeom has 9.5.1 sf has 9.7.1 187s Error in st_transform.stars(st_as_stars(list(m = matrix(1, 10, 10))), : 187s !is.na(st_crs(x)) is not TRUE 187s Error in st_transform_proj.stars(st_as_stars(list(m = matrix(1, 10, 10))), : 187s !is.na(st_crs(x)) is not TRUE 187s > ## IGNORE_RDIFF_END 187s > 187s > # nothing to transform: now errs: 187s > try(st_transform(st_as_stars(list(m = matrix(1,10,10))), st_crs(4326))) 187s > try(st_transform_proj(st_as_stars(list(m = matrix(1,10,10))), st_crs(4326))) 187s > 187s BEGIN TEST warp.R 187s 187s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 187s Copyright (C) 2025 The R Foundation for Statistical Computing 187s Platform: x86_64-pc-linux-gnu 187s 187s R is free software and comes with ABSOLUTELY NO WARRANTY. 187s You are welcome to redistribute it under certain conditions. 187s Type 'license()' or 'licence()' for distribution details. 187s 187s R is a collaborative project with many contributors. 187s Type 'contributors()' for more information and 187s 'citation()' on how to cite R or R packages in publications. 187s 187s Type 'demo()' for some demos, 'help()' for on-line help, or 187s 'help.start()' for an HTML browser interface to help. 187s Type 'q()' to quit R. 187s 187s > suppressPackageStartupMessages(library(stars)) 187s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 187s > x = read_stars(geomatrix) 187s > # can stars reproduce what gdal does, by default? 187s > x2 = st_warp(x, use_gdal = TRUE, no_data_value = -9999) 187s > y = st_warp(x, x2) 187s > if (interactive()) { plot(x2, breaks = "equal", axes=TRUE) } 187s > if (interactive()) { plot(y, breaks = "equal", axes=TRUE) } 187s > names(x2) = names(y) 187s > all.equal(x2, y) # yes? 187s [1] TRUE 187s > 187s > # does gdal reproduce with stars template object? 187s > (x2 = setNames(st_warp(x, y, use_gdal = TRUE, no_data_value=-1), "file.tif")) 187s stars object with 2 dimensions and 1 attribute 187s attribute(s): 187s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 187s file.tif 74 115 123 126.4289 132 255 224 187s dimension(s): 187s from to offset delta refsys point x/y 187s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N FALSE [x] 187s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N FALSE [y] 187s > 187s > # does gdal reproduce what stars does, default cell size? 187s > (x2 = st_warp(x, crs = st_crs(x), use_gdal = FALSE)) 188s stars object with 2 dimensions and 1 attribute 188s attribute(s): 188s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 188s geomatrix.tif 74 115 123 126.4289 132 255 224 188s dimension(s): 188s from to offset delta refsys x/y 188s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N [x] 188s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N [y] 188s > (y = setNames(st_warp(x, x2, use_gdal = TRUE, debug = FALSE, no_data_value=-1), "file.tif")) 188s stars object with 2 dimensions and 1 attribute 188s attribute(s): 188s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 188s file.tif 74 115 123 126.4289 132 255 224 188s dimension(s): 188s from to offset delta refsys point x/y 188s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N FALSE [x] 188s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N FALSE [y] 188s > 188s > # try with multiple bands: 188s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 188s > (x1 = read_stars(tif)) 188s stars object with 3 dimensions and 1 attribute 188s attribute(s): 188s Min. 1st Qu. Median Mean 3rd Qu. Max. 188s L7_ETMs.tif 1 54 69 68.91242 86 255 188s dimension(s): 188s from to offset delta refsys point x/y 188s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 188s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 188s band 1 6 NA NA NA NA 188s > tifcp = tempfile(fileext = ".tif") 188s > file.copy(tif, tifcp) 188s [1] TRUE 188s > x1p = read_stars(tifcp, proxy = TRUE) 188s > st_dimensions(x1p) 188s from to offset delta refsys point x/y 188s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 188s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 188s band 1 6 NA NA NA NA 188s > (x1a = st_warp(x1, crs = st_crs(4326))) 188s stars object with 3 dimensions and 1 attribute 188s attribute(s): 188s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 188s L7_ETMs.tif 1 54 69 68.93072 86 255 8778 188s dimension(s): 188s from to offset delta refsys x/y 188s x 1 350 -34.92 0.0002592 WGS 84 [x] 188s y 1 352 -7.95 -0.0002592 WGS 84 [y] 188s band 1 6 NA NA NA 188s > (x1b = setNames(st_warp(x1, x1p, use_gdal = TRUE, no_data_value=-1), "file.tif")) 188s stars object with 3 dimensions and 1 attribute 188s attribute(s): 188s Min. 1st Qu. Median Mean 3rd Qu. Max. 188s file.tif 1 54 69 68.91242 86 255 188s dimension(s): 188s from to offset delta refsys point x/y 188s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 188s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 188s band 1 6 NA NA NA NA 188s > 188s > # does gdal reproduce what stars does? Smaller grid: 188s > x2 = st_warp(x, crs = st_crs(x), use_gdal = FALSE, cellsize = 3) 188s > # x2 = x2[,2:43,2:43] 188s > if (interactive()) { plot(x2, breaks = "equal", axes=TRUE, reset = FALSE) } 188s > if (interactive()) { plot(st_as_sfc(st_bbox(x2)), add = TRUE, col = NA, border = 'red') } 188s > ### doesn't work: FIXME: check with more recent GDAL: 188s > (y = setNames(st_warp(x, x2, use_gdal = TRUE, debug = FALSE, no_data_value=-1), "file.tif")) 188s stars object with 2 dimensions and 1 attribute 188s attribute(s): 188s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 188s file.tif 74 107 123 126.6584 132 255 727 188s dimension(s): 188s from to offset delta refsys point x/y 188s x 1 44 1840902 3 WGS 84 / UTM zone 11N FALSE [x] 188s y 1 44 1144003 -3 WGS 84 / UTM zone 11N FALSE [y] 188s > if (interactive()) { plot(y, breaks = "equal") } 188s > names(x2) = names(y) 188s > # isTRUE(all.equal(x2, y, check.attributes=FALSE)) 188s > m = mean(as.vector(x2[[1]]==y[[1]]), na.rm = TRUE) 188s > u = unique(as.vector(x2[[1]]-y[[1]])) 188s > 188s > g = st_as_stars() 188s > attr(g, "dimensions")$x$offset = 0 188s > g$values = as.vector(t(matrix(seq_len(prod(dim(g))), 180, 360))) 188s > if (interactive()) { plot(g, axes=TRUE) } 188s > a = st_warp(g, st_as_stars(), use_gdal=FALSE) 188s > b = st_warp(g, st_as_stars(), use_gdal=TRUE, no_data_value = -1) 188s > all.equal(a, b, check.attributes = FALSE) 188s [1] TRUE 188s > 188s BEGIN TEST write.R 188s 188s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 188s Copyright (C) 2025 The R Foundation for Statistical Computing 188s Platform: x86_64-pc-linux-gnu 188s 188s R is free software and comes with ABSOLUTELY NO WARRANTY. 188s You are welcome to redistribute it under certain conditions. 188s Type 'license()' or 'licence()' for distribution details. 188s 188s R is a collaborative project with many contributors. 188s Type 'contributors()' for more information and 188s 'citation()' on how to cite R or R packages in publications. 188s 188s Type 'demo()' for some demos, 'help()' for on-line help, or 188s 'help.start()' for an HTML browser interface to help. 188s Type 'q()' to quit R. 188s 188s > suppressPackageStartupMessages(library(stars)) 188s > 188s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 188s > (x = read_stars(tif)) 188s stars object with 3 dimensions and 1 attribute 188s attribute(s): 188s Min. 1st Qu. Median Mean 3rd Qu. Max. 188s L7_ETMs.tif 1 54 69 68.91242 86 255 188s dimension(s): 188s from to offset delta refsys point x/y 188s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 188s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 188s band 1 6 NA NA NA NA 188s > 188s > # write stars object: 188s > write_stars(x, tempfile(), driver = "GTiff") 188s > 188s > # write stars_proxy object: 188s > (x = read_stars(tif, proxy = TRUE)) 188s stars_proxy object with 1 attribute in 1 file(s): 188s $L7_ETMs.tif 188s [1] "[...]/L7_ETMs.tif" 188s 188s dimension(s): 188s from to offset delta refsys point x/y 188s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 188s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 188s band 1 6 NA NA NA NA 188s > write_stars(x, tempfile(), driver = "GTiff") 188s 188s > 189s autopkgtest [19:40:04]: test run-unit-test: -----------------------] 189s autopkgtest [19:40:04]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 189s run-unit-test PASS 190s autopkgtest [19:40:05]: test pkg-r-autopkgtest: preparing testbed 209s Creating nova instance adt-resolute-i386-r-cran-stars-20260205-193654-juju-7f2275-prod-proposed-migration-environment-2-ef8e8637-8615-4a32-9cef-89ce532dc529 from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)... 326s autopkgtest [19:42:21]: testbed dpkg architecture: amd64 326s autopkgtest [19:42:21]: testbed apt version: 3.1.14 327s autopkgtest [19:42:22]: @@@@@@@@@@@@@@@@@@@@ test bed setup 327s autopkgtest [19:42:22]: testbed release detected to be: resolute 327s autopkgtest [19:42:22]: updating testbed package index (apt update) 336s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 336s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 336s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 336s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 336s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [5260 B] 336s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [231 kB] 336s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [35.2 kB] 336s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1759 kB] 336s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [277 kB] 336s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [205 kB] 336s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [7260 B] 336s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [32.9 kB] 336s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3692 B] 336s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 336s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [603 kB] 336s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1541 kB] 336s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [40.1 kB] 336s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [5460 B] 336s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [29.9 kB] 336s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [1116 B] 336s Fetched 4901 kB in 1s (4857 kB/s) 336s Reading package lists... 336s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 336s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 336s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 336s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 336s Reading package lists... 336s Reading package lists... 336s Building dependency tree... 336s Reading state information... 336s Calculating upgrade... 336s The following packages will be upgraded: 336s amd64-microcode pollinate python3-linkify-it python3-referencing sed 336s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 336s Need to get 561 kB of archives. 336s After this operation, 4096 B disk space will be freed. 336s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB] 336s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 336s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB] 336s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 336s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20250708.1ubuntu2 [310 kB] 336s dpkg-preconfigure: unable to re-open stdin: No such file or directory 336s Fetched 561 kB in 0s (23.7 MB/s) 337s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 337s Preparing to unpack .../sed_4.9-2build3_amd64.deb ... 337s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 337s Setting up sed (4.9-2build3) ... 337s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 337s Preparing to unpack .../python3-linkify-it_2.0.3-1ubuntu3_all.deb ... 337s Unpacking python3-linkify-it (2.0.3-1ubuntu3) over (2.0.3-1ubuntu2) ... 337s Preparing to unpack .../pollinate_4.33-4ubuntu5_all.deb ... 337s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ... 337s Preparing to unpack .../python3-referencing_0.36.2-1ubuntu2_all.deb ... 337s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ... 337s Preparing to unpack .../amd64-microcode_3.20250708.1ubuntu2_amd64.deb ... 337s Unpacking amd64-microcode (3.20250708.1ubuntu2) over (3.20250708.1ubuntu1) ... 337s Setting up amd64-microcode (3.20250708.1ubuntu2) ... 337s amd64-microcode: microcode will be updated at next boot 337s Setting up pollinate (4.33-4ubuntu5) ... 347s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 347s Setting up python3-referencing (0.36.2-1ubuntu2) ... 347s Processing triggers for install-info (7.2-5) ... 347s Processing triggers for man-db (2.13.1-1) ... 348s Processing triggers for initramfs-tools (0.150ubuntu7) ... 348s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 376s autopkgtest [19:42:47]: upgrading testbed (apt dist-upgrade and autopurge) 383s Reading package lists... 383s Building dependency tree... 383s Reading state information... 383s Calculating upgrade... 383s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 392s Reading package lists... 392s Building dependency tree... 392s Reading state information... 392s Solving dependencies... 392s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 406s autopkgtest [19:43:41]: rebooting testbed after setup commands that affected boot 437s Reading package lists... 437s Building dependency tree... 437s Reading state information... 437s Solving dependencies... 437s Some packages could not be installed. This may mean that you have 437s requested an impossible situation or if you are using the unstable 437s distribution that some required packages have not yet been created 437s or been moved out of Incoming. 437s The following information may help to resolve the situation: 437s 437s The following packages have unmet dependencies: 437s satisfy:command-line : Depends: r-cran-stars but it is not going to be installed 437s Depends: r-cran-cairo but it is not going to be installed 437s Depends: r-cran-pcict but it is not going to be installed 437s Depends: r-cran-rnetcdf but it is not going to be installed 437s Depends: r-cran-clue but it is not going to be installed 437s Depends: r-cran-covr but it is not going to be installed 437s Depends: r-cran-digest but it is not going to be installed 437s Depends: r-cran-dplyr but it is not going to be installed 437s Depends: r-cran-fnn but it is not going to be installed 437s Depends: r-cran-future.apply but it is not going to be installed 437s Depends: r-cran-ggforce but it is not going to be installed 437s Depends: r-cran-ggplot2 but it is not going to be installed 437s Depends: r-cran-ggthemes but it is not going to be installed 437s Depends: r-cran-httr but it is not going to be installed 437s Depends: r-cran-jsonlite but it is not going to be installed 437s Depends: r-cran-knitr but it is not going to be installed 437s Depends: r-cran-lwgeom but it is not going to be installed 437s Depends: r-cran-maps but it is not going to be installed 437s Depends: r-cran-mapdata but it is not going to be installed 437s Depends: r-cran-ncdfgeom but it is not going to be installed 437s Depends: r-cran-ncmeta but it is not going to be installed 437s Depends: r-cran-pbapply but it is not going to be installed 437s Depends: r-cran-plm but it is not going to be installed 437s Depends: r-cran-randomforest but it is not going to be installed 437s Depends: r-cran-raster but it is not going to be installed 437s Depends: r-cran-rmarkdown but it is not going to be installed 437s Depends: r-cran-sp but it is not going to be installed 437s Depends: r-cran-spacetime but it is not going to be installed 437s Depends: r-cran-spatstat but it is not going to be installed 437s Depends: r-cran-spatstat.data but it is not going to be installed 437s Depends: r-cran-spatstat.utils but it is not going to be installed 437s Depends: r-cran-testthat but it is not going to be installed 437s Depends: r-cran-tibble but it is not going to be installed 437s Depends: r-cran-tidyr but it is not going to be installed 437s Depends: r-cran-viridis but it is not going to be installed 437s Depends: r-cran-xts but it is not going to be installed 437s Depends: r-cran-zoo but it is not going to be installed 437s Depends: pkg-r-autopkgtest but it is not going to be installed 437s E: Unable to satisfy dependencies. Reached two conflicting assignments: 437s 1. libpcre2-dev:amd64 is selected for install because: 437s 1. satisfy:command-line:amd64=1 is selected for install 437s 2. satisfy:command-line:amd64 Depends pkg-r-autopkgtest 437s 3. pkg-r-autopkgtest:amd64 Depends r-base-dev 437s 4. r-base-dev:amd64 Depends libpcre2-dev 437s 2. libpcre2-dev:amd64 Depends libc-dev 437s but none of the choices are installable: 437s - libc6-dev:amd64=2.42-2ubuntu4 is not selected for install 437s - libc6-dev:amd64=2.42-2ubuntu5 is not selected for install 437s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from resolute-proposed 438s Reading package lists... 438s Building dependency tree... 438s Reading state information... 438s Solving dependencies... 438s The following NEW packages will be installed: 438s build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu 438s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 438s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-15 438s g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-15 438s gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu gdal-data gdal-plugins gfortran 438s gfortran-15 gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu 438s icu-devtools javascript-common libabsl20260107 libaec0 libaom3 438s libarmadillo15 libarpack2t64 libasan8 libavif16 libblas-dev libblas3 438s libblosc1 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 438s libcfitsio10t64 libcrypt-dev libdatrie1 libdav1d7 libde265-0 libdeflate-dev 438s libdeflate0 libfontconfig1 libfreexl1 libfyba0t64 libgav1-2 libgcc-15-dev 438s libgdal38 libgeos-c1t64 libgeos3.14.1 libgeotiff5 libgfortran-15-dev 438s libgfortran5 libgif7 libgomp1 libgpgmepp6t64 libgraphite2-3 libharfbuzz0b 438s libhdf4-0 libhdf5-310 libhdf5-hl-310 libheif-plugin-aomdec 438s libheif-plugin-libde265 libheif1 libhwasan0 libhwy1t64 libice6 libicu-dev 438s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 438s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 438s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 438s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 438s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 438s libjs-sifter.js libjs-twitter-bootstrap-datepicker libjxl0.11 libkmlbase1t64 438s libkmldom1t64 libkmlengine1t64 liblapack-dev liblapack3 liblcms2-2 liblerc4 438s liblsan0 libltdl7 liblua5.4-0 liblzma-dev libminizip1t64 libmpc3 438s libmuparser2v5 libmysqlclient24 libncurses-dev libnetcdf22 libodbc2 438s libodbcinst2 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 438s libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 438s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf7 libpng-dev 438s libpoppler147 libpq5 libproj25 libqhull-r8.0 libquadmath0 libreadline-dev 438s librttopo1 libsharpyuv0 libsm6 libsnappy1v5 libspatialite8t64 438s libstdc++-15-dev libsuperlu7 libsz2 libtcl8.6 libthai-data libthai0 libtiff6 438s libtirpc-dev libtk8.6 libtsan2 libubsan1 libudunits2-0 libudunits2-data 438s liburiparser1 libwebp7 libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 438s libxrender1 libxss1 libxt6t64 libyuv0 libzstd-dev linux-libc-dev 438s mysql-common node-bootstrap-sass node-html5shiv node-normalize.css pandoc 438s pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin proj-data r-base-core 438s r-base-dev r-cran-abind r-cran-areal r-cran-askpass r-cran-base64enc 438s r-cran-bdsmatrix r-cran-brio r-cran-bslib r-cran-cachem r-cran-cairo 438s r-cran-callr r-cran-cftime r-cran-class r-cran-classint r-cran-cli 438s r-cran-clue r-cran-cluster r-cran-codetools r-cran-collapse 438s r-cran-commonmark r-cran-covr r-cran-cpp11 r-cran-crayon r-cran-curl 438s r-cran-dbi r-cran-deldir r-cran-desc r-cran-diffobj r-cran-digest 438s r-cran-dplyr r-cran-e1071 r-cran-evaluate r-cran-fansi r-cran-farver 438s r-cran-fastmap r-cran-fnn r-cran-fontawesome r-cran-formula r-cran-fs 438s r-cran-future r-cran-future.apply r-cran-generics r-cran-ggforce 438s r-cran-ggplot2 r-cran-ggthemes r-cran-globals r-cran-glue r-cran-goftest 438s r-cran-gridextra r-cran-gtable r-cran-highr r-cran-htmltools r-cran-httpuv 438s r-cran-httr r-cran-intervals r-cran-isoband r-cran-jquerylib r-cran-jsonlite 438s r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice 438s r-cran-lazyeval r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lmtest 438s r-cran-lwgeom r-cran-magrittr r-cran-mapdata r-cran-maps r-cran-mass 438s r-cran-matrix r-cran-maxlik r-cran-memoise r-cran-mgcv r-cran-mime 438s r-cran-misctools r-cran-ncdfgeom r-cran-ncmeta r-cran-nlme r-cran-openssl 438s r-cran-parallelly r-cran-pbapply r-cran-pcict r-cran-pillar r-cran-pkgbuild 438s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plm r-cran-polyclip 438s r-cran-praise r-cran-processx r-cran-promises r-cran-proxy r-cran-ps 438s r-cran-purrr r-cran-r6 r-cran-randomforest r-cran-rappdirs r-cran-raster 438s r-cran-rbibutils r-cran-rcolorbrewer r-cran-rcpp r-cran-rdpack r-cran-rex 438s r-cran-rlang r-cran-rmarkdown r-cran-rnetcdf r-cran-rpart r-cran-rprojroot 438s r-cran-s2 r-cran-s7 r-cran-sandwich r-cran-sass r-cran-scales r-cran-sf 438s r-cran-shiny r-cran-sourcetools r-cran-sp r-cran-spacetime r-cran-spatstat 438s r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom 438s r-cran-spatstat.linnet r-cran-spatstat.model r-cran-spatstat.random 438s r-cran-spatstat.sparse r-cran-spatstat.univar r-cran-spatstat.utils 438s r-cran-stars r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 438s r-cran-systemfonts r-cran-tensor r-cran-terra r-cran-testthat r-cran-tibble 438s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tweenr r-cran-units 438s r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-waldo 438s r-cran-withr r-cran-wk r-cran-xfun r-cran-xtable r-cran-xts r-cran-yaml 438s r-cran-zoo rpcsvc-proto unixodbc-common unzip x11-common xdg-utils zip 438s zlib1g-dev 438s The following packages will be upgraded: 438s libc-gconv-modules-extra libc6 libpcre2-8-0 libreadline8t64 zlib1g 438s 5 upgraded, 349 newly installed, 0 to remove and 169 not upgraded. 438s Need to get 410 MB of archives. 438s After this operation, 1170 MB of additional disk space will be used. 438s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc-gconv-modules-extra amd64 2.42-2ubuntu5 [1394 kB] 438s Get:2 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc6 amd64 2.42-2ubuntu5 [2041 kB] 438s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpcre2-8-0 amd64 10.46-1build1 [257 kB] 438s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-1ubuntu3 [63.9 kB] 438s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libreadline8t64 amd64 8.3-3build1 [164 kB] 438s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc-dev-bin amd64 2.42-2ubuntu5 [23.3 kB] 438s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 linux-libc-dev amd64 6.19.0-3.3 [1846 kB] 439s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB] 439s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB] 439s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libc6-dev amd64 2.42-2ubuntu5 [2206 kB] 439s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB] 439s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB] 439s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB] 439s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B] 439s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B] 439s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB] 439s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 15.2.0-12ubuntu1 [47.4 kB] 439s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-12ubuntu1 [151 kB] 439s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 15.2.0-12ubuntu1 [29.5 kB] 439s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 15.2.0-12ubuntu1 [3070 kB] 439s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 15.2.0-12ubuntu1 [1360 kB] 439s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 15.2.0-12ubuntu1 [2757 kB] 440s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 15.2.0-12ubuntu1 [1210 kB] 440s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 15.2.0-12ubuntu1 [1685 kB] 440s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 15.2.0-12ubuntu1 [153 kB] 440s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB] 440s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB] 440s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB] 440s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B] 440s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B] 440s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB] 440s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB] 440s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB] 440s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B] 440s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B] 440s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B] 440s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 dctrl-tools amd64 2.24-3build4 [104 kB] 440s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 440s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 440s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB] 440s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB] 440s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB] 440s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 440s Get:44 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 440s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 440s Get:46 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-data all 3.12.1+dfsg-1 [278 kB] 440s Get:47 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-plugins amd64 3.12.1+dfsg-1 [26.8 kB] 440s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-12ubuntu1 [939 kB] 441s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-12ubuntu1 [973 kB] 441s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [13.6 MB] 441s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-12ubuntu1 [18.1 kB] 441s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1014 B] 441s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran amd64 4:15.2.0-4ubuntu1 [1172 B] 441s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB] 441s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 javascript-common all 12+nmu1build1 [4864 B] 441s Get:56 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libabsl20260107 amd64 20260107.0-1 [587 kB] 441s Get:57 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.5-1 [22.5 kB] 441s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libaom3 amd64 3.13.1-2 [1970 kB] 441s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 441s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 441s Get:61 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 libarpack2t64 amd64 3.9.1-6build1 [106 kB] 441s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsuperlu7 amd64 7.0.1+dfsg1-2 [186 kB] 441s Get:63 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarmadillo15 amd64 1:15.2.1+dfsg-2 [109 kB] 441s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdav1d7 amd64 1.5.3-1 [626 kB] 441s Get:65 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgav1-2 amd64 0.20.0-2build1 [402 kB] 441s Get:66 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu3 [156 kB] 441s Get:67 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libjpeg8 amd64 8c-2ubuntu12 [2142 B] 441s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libyuv0 amd64 0.0.1922.20260106-1 [184 kB] 441s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 libavif16 amd64 1.3.0-1ubuntu3 [117 kB] 441s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas-dev amd64 3.12.1-7ubuntu1 [235 kB] 441s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libsnappy1v5 amd64 1.2.2-2 [30.8 kB] 441s Get:72 http://ftpmaster.internal/ubuntu resolute/universe amd64 libblosc1 amd64 1.21.5+ds-2 [35.8 kB] 441s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-dev amd64 1.0.8-6build2 [36.2 kB] 441s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 441s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB] 441s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B] 441s Get:77 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libxrender1 amd64 1:0.9.12-1build1 [19.2 kB] 441s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 441s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcfitsio10t64 amd64 4.6.3-1 [549 kB] 441s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB] 441s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 libde265-0 amd64 1.0.16-1build1 [172 kB] 441s Get:82 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libdeflate0 amd64 1.23-2build1 [51.6 kB] 441s Get:83 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libdeflate-dev amd64 1.23-2build1 [58.8 kB] 441s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfyba0t64 amd64 4.1.1-11build2 [120 kB] 441s Get:85 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu3 [22.6 kB] 441s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfreexl1 amd64 2.0.0-1build3 [42.9 kB] 441s Get:87 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos3.14.1 amd64 3.14.1-2 [976 kB] 441s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos-c1t64 amd64 3.14.1-2 [116 kB] 441s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 proj-data all 9.7.1-1 [7950 kB] 442s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 442s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 442s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 442s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 442s Get:94 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libtiff6 amd64 4.7.0-3ubuntu4 [209 kB] 442s Get:95 http://ftpmaster.internal/ubuntu resolute/universe amd64 libproj25 amd64 9.7.1-1 [1499 kB] 442s Get:96 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 libgeotiff5 amd64 1.7.4-1build1 [61.5 kB] 442s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 libgif7 amd64 5.2.2-1ubuntu3 [36.0 kB] 442s Get:98 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.5-1 [17.9 kB] 442s Get:99 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf4-0 amd64 4.3.1-2 [318 kB] 442s Get:100 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.6+repack-2 [1433 kB] 442s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-aomdec amd64 1.21.2-1 [14.2 kB] 442s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-libde265 amd64 1.21.2-1 [9978 B] 442s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif1 amd64 1.21.2-1 [544 kB] 442s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwy1t64 amd64 1.3.0-2 [768 kB] 442s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.17-1 [170 kB] 442s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libjxl0.11 amd64 0.11.1-6ubuntu1 [1122 kB] 442s Get:107 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 liburiparser1 amd64 0.9.8+dfsg-2build1 [37.6 kB] 442s Get:108 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlbase1t64 amd64 1.3.0-13 [51.7 kB] 442s Get:109 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmldom1t64 amd64 1.3.0-13 [156 kB] 442s Get:110 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlengine1t64 amd64 1.3.0-13 [74.1 kB] 442s Get:111 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmuparser2v5 amd64 2.3.4-2 [143 kB] 442s Get:112 http://ftpmaster.internal/ubuntu resolute/main amd64 mysql-common all 5.8+1.1.1ubuntu2 [7002 B] 442s Get:113 http://ftpmaster.internal/ubuntu resolute/main amd64 libmysqlclient24 amd64 8.4.8-0ubuntu1 [1258 kB] 442s Get:114 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.6+repack-2 [59.9 kB] 442s Get:115 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnetcdf22 amd64 1:4.9.3-1build1 [561 kB] 442s Get:116 http://ftpmaster.internal/ubuntu resolute/main amd64 libltdl7 amd64 2.5.4-9 [43.7 kB] 442s Get:117 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbc2 amd64 2.3.14-1 [160 kB] 442s Get:118 http://ftpmaster.internal/ubuntu resolute/main amd64 unixodbc-common all 2.3.14-1 [8792 B] 442s Get:119 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbcinst2 amd64 2.3.14-1 [32.0 kB] 442s Get:120 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.4-1 [188 kB] 442s Get:121 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpgmepp6t64 amd64 1.24.2-3ubuntu2 [124 kB] 442s Get:122 http://ftpmaster.internal/ubuntu resolute/main amd64 libpoppler147 amd64 25.03.0-11.1 [1224 kB] 442s Get:123 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpq5 amd64 18.1-2build1 [155 kB] 442s Get:124 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-8 [197 kB] 442s Get:125 http://ftpmaster.internal/ubuntu resolute/universe amd64 librttopo1 amd64 1.1.0-4 [205 kB] 442s Get:126 http://ftpmaster.internal/ubuntu resolute/universe amd64 libspatialite8t64 amd64 5.1.0-3ubuntu1 [1927 kB] 442s Get:127 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3build2 [991 kB] 442s Get:128 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgdal38 amd64 3.12.1+dfsg-1 [11.4 MB] 443s Get:129 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 443s Get:130 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB] 443s Get:131 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 x11-common all 1:7.7+24ubuntu2 [22.4 kB] 443s Get:132 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB] 443s Get:133 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB] 443s Get:134 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libjpeg-turbo8-dev amd64 2.1.5-4ubuntu3 [300 kB] 443s Get:135 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libjpeg8-dev amd64 8c-2ubuntu12 [1480 B] 443s Get:136 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libjpeg-dev amd64 8c-2ubuntu12 [1480 B] 443s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 443s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB] 443s Get:139 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 443s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-d3 all 3.5.17-4build1 [136 kB] 443s Get:141 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 443s Get:142 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 443s Get:143 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 443s Get:144 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 443s Get:145 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 443s Get:146 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B] 443s Get:147 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 443s Get:148 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB] 443s Get:149 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB] 443s Get:150 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-prettify all 2015.12.04+dfsg-2 [41.3 kB] 443s Get:151 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack-dev amd64 3.12.1-7ubuntu1 [5433 kB] 443s Get:152 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 liblua5.4-0 amd64 5.4.8-1build1 [163 kB] 443s Get:153 http://ftpmaster.internal/ubuntu resolute/main amd64 libncurses-dev amd64 6.6+20251231-1 [389 kB] 443s Get:154 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB] 443s Get:155 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB] 443s Get:156 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB] 443s Get:157 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB] 443s Get:158 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB] 443s Get:159 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB] 443s Get:160 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB] 443s Get:161 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpcre2-16-0 amd64 10.46-1build1 [240 kB] 443s Get:162 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpcre2-32-0 amd64 10.46-1build1 [227 kB] 443s Get:163 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpcre2-posix3 amd64 10.46-1build1 [7182 B] 443s Get:164 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpcre2-dev amd64 10.46-1build1 [824 kB] 443s Get:165 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpkgconf7 amd64 2.5.1-2 [38.7 kB] 443s Get:166 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu3 [895 kB] 443s Get:167 http://ftpmaster.internal/ubuntu resolute/main amd64 libpng-dev amd64 1.6.54-1 [273 kB] 443s Get:168 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libreadline-dev amd64 8.3-3build1 [180 kB] 443s Get:169 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB] 443s Get:170 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB] 443s Get:171 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 443s Get:172 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 443s Get:173 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libtk8.6 amd64 8.6.17-1build1 [793 kB] 443s Get:174 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-data all 2.2.28-8 [19.3 kB] 443s Get:175 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-0 amd64 2.2.28-8 [54.6 kB] 443s Get:176 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB] 443s Get:177 http://ftpmaster.internal/ubuntu resolute/main amd64 libzstd-dev amd64 1.5.7+dfsg-3 [376 kB] 443s Get:178 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 443s Get:179 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 443s Get:180 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 443s Get:181 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 443s Get:182 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc amd64 3.1.11.1+ds-4 [27.2 MB] 444s Get:183 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 zip amd64 3.0-15ubuntu3 [175 kB] 444s Get:184 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB] 444s Get:185 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 444s Get:186 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB] 444s Get:187 http://ftpmaster.internal/ubuntu resolute/main amd64 liblzma-dev amd64 5.8.2-2 [179 kB] 444s Get:188 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 pkgconf-bin amd64 2.5.1-2 [22.8 kB] 444s Get:189 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 pkgconf amd64 2.5.1-2 [20.0 kB] 444s Get:190 http://ftpmaster.internal/ubuntu resolute/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB] 444s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 444s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 pkg-r-autopkgtest all 20250812 [6158 B] 444s Get:193 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-abind all 1.4-8-1build1 [67.0 kB] 444s Get:194 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-cli amd64 3.6.5-1 [1383 kB] 444s Get:195 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-generics all 0.1.4-1 [84.0 kB] 444s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 444s Get:197 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-rlang amd64 1.1.6-1 [1708 kB] 444s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 444s Get:199 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-magrittr amd64 2.0.4-1 [160 kB] 444s Get:200 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-utf8 amd64 1.2.6-1 [145 kB] 444s Get:201 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 444s Get:202 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB] 444s Get:203 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 444s Get:204 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-fansi amd64 1.0.7-1 [798 kB] 444s Get:205 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 444s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 444s Get:207 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 444s Get:208 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 444s Get:209 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 444s Get:210 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 444s Get:211 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB] 444s Get:212 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 444s Get:213 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 444s Get:214 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-e1071 amd64 1.7-17-1 [579 kB] 444s Get:215 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-kernsmooth amd64 2.23-26-1build1 [93.6 kB] 444s Get:216 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-classint amd64 0.4-11+dfsg-1 [108 kB] 444s Get:217 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbi all 1.2.3-1build1 [855 kB] 444s Get:218 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-littler amd64 0.3.22-1 [85.5 kB] 444s Get:219 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 444s Get:220 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-rcpp amd64 1.1.1-2 [2055 kB] 445s Get:221 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-wk amd64 0.9.5-1 [1793 kB] 445s Get:222 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s2 amd64 1.1.9-1build1 [1815 kB] 445s Get:223 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-units amd64 1.0-0+dfsg-1 [315 kB] 445s Get:224 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-sf amd64 1.0-24+dfsg-1 [3307 kB] 445s Get:225 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-areal all 0.1.8+dfsg-2 [1004 kB] 445s Get:226 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 445s Get:227 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 445s Get:228 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-base64enc amd64 0.1-6-1 [30.7 kB] 445s Get:229 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bdsmatrix amd64 1.3-7-1 [299 kB] 445s Get:230 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 445s Get:231 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 445s Get:232 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 445s Get:233 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB] 445s Get:234 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-htmltools amd64 0.5.9-1 [373 kB] 445s Get:235 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB] 445s Get:236 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-jsonlite amd64 2.0.0+dfsg-1 [447 kB] 445s Get:237 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-memoise all 2.0.1-1build1 [54.5 kB] 445s Get:238 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-mime amd64 0.13-1 [47.4 kB] 445s Get:239 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-fs amd64 1.6.6+dfsg-1 [245 kB] 445s Get:240 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-rappdirs amd64 0.3.4-1 [50.1 kB] 445s Get:241 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 445s Get:242 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB] 445s Get:243 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-cairo amd64 1.7-0-1 [91.1 kB] 445s Get:244 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-ps amd64 1.9.1-1 [409 kB] 445s Get:245 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 445s Get:246 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 445s Get:247 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cftime all 1.7.2-1 [918 kB] 445s Get:248 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cluster amd64 2.1.8.1-1build1 [570 kB] 445s Get:249 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-clue amd64 0.3-66-1 [968 kB] 445s Get:250 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-codetools all 0.2-20-1build1 [91.1 kB] 445s Get:251 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-collapse amd64 2.1.6-1 [3317 kB] 445s Get:252 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-commonmark amd64 2.0.0-1 [135 kB] 445s Get:253 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lazyeval amd64 0.2.2-1build2 [146 kB] 445s Get:254 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rex all 1.2.1-1build1 [126 kB] 445s Get:255 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-curl amd64 7.0.0+dfsg-1 [202 kB] 445s Get:256 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 445s Get:257 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 445s Get:258 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 445s Get:259 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-covr amd64 3.6.5+dfsg-1 [323 kB] 445s Get:260 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cpp11 all 0.5.3-1 [242 kB] 445s Get:261 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 445s Get:262 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 445s Get:263 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 445s Get:264 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-diffobj amd64 0.3.6-1 [1156 kB] 445s Get:265 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-evaluate all 1.0.5-1 [117 kB] 445s Get:266 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 445s Get:267 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB] 445s Get:268 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 445s Get:269 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 445s Get:270 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-globals all 0.19.0-1 [160 kB] 445s Get:271 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-listenv all 0.10.0+dfsg-1 [113 kB] 445s Get:272 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-parallelly amd64 1.46.0-1 [593 kB] 445s Get:273 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-future all 1.69.0+dfsg-1 [910 kB] 445s Get:274 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-future.apply all 1.20.1+dfsg-1 [190 kB] 445s Get:275 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 445s Get:276 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-isoband amd64 0.3.0-1 [1513 kB] 445s Get:277 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-s7 amd64 0.2.1-1 [330 kB] 445s Get:278 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 445s Get:279 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 445s Get:280 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 445s Get:281 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB] 445s Get:282 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-ggplot2 all 4.0.1+dfsg-1 [4935 kB] 446s Get:283 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tweenr amd64 2.0.3-1 [410 kB] 446s Get:284 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB] 446s Get:285 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-systemfonts amd64 1.3.1-1 [690 kB] 446s Get:286 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-ggforce amd64 0.5.0-1 [1935 kB] 446s Get:287 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringi amd64 1.8.4-1build2 [908 kB] 446s Get:288 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 446s Get:289 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggthemes all 5.2.0-1 [760 kB] 446s Get:290 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-goftest amd64 1.2-3-1build1 [60.5 kB] 446s Get:291 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gridextra all 2.3-3build2 [1032 kB] 446s Get:292 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB] 446s Get:293 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 446s Get:294 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-later amd64 1.4.5+dfsg-1 [146 kB] 446s Get:295 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 446s Get:296 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-httpuv amd64 1.6.16+dfsg-1 [532 kB] 446s Get:297 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-intervals amd64 0.15.5-1 [602 kB] 446s Get:298 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 446s Get:299 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 446s Get:300 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lattice amd64 0.22-7-1 [1367 kB] 446s Get:301 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-zoo amd64 1.8-15-1 [1025 kB] 446s Get:302 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lmtest amd64 0.9.40-1build1 [400 kB] 446s Get:303 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lwgeom amd64 0.2-14-1 [463 kB] 446s Get:304 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-maps amd64 3.4.3-1 [2351 kB] 446s Get:305 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mapdata amd64 2.3.1-1 [23.5 MB] 447s Get:306 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrix amd64 1.7-4-1 [4220 kB] 447s Get:307 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-misctools all 0.6-28-1 [99.9 kB] 447s Get:308 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sandwich all 3.1-1-1build1 [1483 kB] 447s Get:309 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-maxlik all 1.5-2.2-1 [1115 kB] 447s Get:310 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-nlme amd64 3.1.168-1 [2320 kB] 447s Get:311 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mgcv amd64 1.9-4-1 [3556 kB] 447s Get:312 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-rnetcdf amd64 2.11-1-1 [242 kB] 448s Get:313 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 448s Get:314 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ncmeta all 0.4.0-1 [362 kB] 448s Get:315 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stars all 0.6-8-1 [4414 kB] 448s Get:316 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ncdfgeom all 1.1.6+dfsg-1 [4124 kB] 448s Get:317 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 448s Get:318 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pcict amd64 0.5-4.4-1 [94.4 kB] 448s Get:319 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgbuild all 1.4.8-1 [219 kB] 448s Get:320 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rprojroot all 2.1.1-1 [131 kB] 448s Get:321 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgload all 1.4.1-1 [252 kB] 448s Get:322 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-rbibutils amd64 2.4.1-1 [1076 kB] 448s Get:323 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-rdpack all 2.6.5-1 [635 kB] 448s Get:324 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plm all 2.6-7-1 [1823 kB] 448s Get:325 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-praise all 1.0.0-4build2 [20.9 kB] 448s Get:326 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-randomforest amd64 4.7-1.2-1 [216 kB] 448s Get:327 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sp amd64 1:2.2-0+dfsg-1 [1444 kB] 448s Get:328 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-terra amd64 1.8-70-1build2 [4344 kB] 448s Get:329 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-raster amd64 3.6-32-1 [3186 kB] 448s Get:330 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tinytex all 0.58-1 [148 kB] 448s Get:331 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-modernizr all 3.13.0-0.1build1 [100 kB] 448s Get:332 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xtable all 1:1.8-4-2build1 [691 kB] 448s Get:333 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 448s Get:334 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 448s Get:335 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 449s Get:336 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-rmarkdown all 2.30+dfsg-1 [1501 kB] 449s Get:337 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-survival amd64 3.8-6-1 [8274 kB] 449s Get:338 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rpart amd64 4.1.24-1build1 [666 kB] 449s Get:339 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xts amd64 0.14.1-1 [1198 kB] 449s Get:340 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spacetime all 1.3-3-2 [2780 kB] 449s Get:341 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.utils amd64 3.1-3-1 [387 kB] 449s Get:342 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.data all 3.1-6-1 [4153 kB] 449s Get:343 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.univar amd64 3.1-2-1 [315 kB] 449s Get:344 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.geom amd64 3.3-6-1 [3968 kB] 449s Get:345 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.random amd64 3.3-3-1 [1177 kB] 450s Get:346 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tensor all 1.5-4build1 [16.3 kB] 450s Get:347 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.sparse amd64 3.1-0-1 [221 kB] 450s Get:348 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.explore amd64 3.3-4-1 [3347 kB] 450s Get:349 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.model amd64 3.3-4-1 [3397 kB] 450s Get:350 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.linnet amd64 3.2-5-1 [1509 kB] 450s Get:351 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat amd64 3.3-1-1 [4121 kB] 450s Get:352 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-waldo all 0.6.2-1 [153 kB] 450s Get:353 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-testthat amd64 3.3.2-1 [1890 kB] 450s Get:354 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 451s Preconfiguring packages ... 451s Fetched 410 MB in 12s (33.1 MB/s) 451s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 451s Preparing to unpack .../libpcre2-8-0_10.46-1build1_amd64.deb ... 451s Unpacking libpcre2-8-0:amd64 (10.46-1build1) over (10.46-1) ... 451s Setting up libpcre2-8-0:amd64 (10.46-1build1) ... 451s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 451s Preparing to unpack .../zlib1g_1%3a1.3.dfsg+really1.3.1-1ubuntu3_amd64.deb ... 451s Unpacking zlib1g:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu3) over (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 451s Setting up zlib1g:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu3) ... 451s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 451s Preparing to unpack .../000-libreadline8t64_8.3-3build1_amd64.deb ... 451s Leaving 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 451s Leaving 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 451s Leaving 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 451s Leaving 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 451s Unpacking libreadline8t64:amd64 (8.3-3build1) over (8.3-3) ... 451s Selecting previously unselected package libc-dev-bin. 451s Preparing to unpack .../001-libc-dev-bin_2.42-2ubuntu5_amd64.deb ... 451s Unpacking libc-dev-bin (2.42-2ubuntu5) ... 451s Selecting previously unselected package linux-libc-dev:amd64. 451s Preparing to unpack .../002-linux-libc-dev_6.19.0-3.3_amd64.deb ... 451s Unpacking linux-libc-dev:amd64 (6.19.0-3.3) ... 452s Selecting previously unselected package libcrypt-dev:amd64. 452s Preparing to unpack .../003-libcrypt-dev_1%3a4.5.1-1_amd64.deb ... 452s Unpacking libcrypt-dev:amd64 (1:4.5.1-1) ... 452s Selecting previously unselected package rpcsvc-proto. 452s Preparing to unpack .../004-rpcsvc-proto_1.4.3-1build1_amd64.deb ... 452s Unpacking rpcsvc-proto (1.4.3-1build1) ... 452s Selecting previously unselected package libc6-dev:amd64. 452s Preparing to unpack .../005-libc6-dev_2.42-2ubuntu5_amd64.deb ... 452s Unpacking libc6-dev:amd64 (2.42-2ubuntu5) ... 452s Selecting previously unselected package libisl23:amd64. 452s Preparing to unpack .../006-libisl23_0.27-1build1_amd64.deb ... 452s Unpacking libisl23:amd64 (0.27-1build1) ... 452s Selecting previously unselected package libmpc3:amd64. 452s Preparing to unpack .../007-libmpc3_1.3.1-2_amd64.deb ... 452s Unpacking libmpc3:amd64 (1.3.1-2) ... 452s Selecting previously unselected package cpp-15-x86-64-linux-gnu. 452s Preparing to unpack .../008-cpp-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 452s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 452s Selecting previously unselected package cpp-15. 452s Preparing to unpack .../009-cpp-15_15.2.0-12ubuntu1_amd64.deb ... 452s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 452s Selecting previously unselected package cpp-x86-64-linux-gnu. 452s Preparing to unpack .../010-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 452s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 452s Selecting previously unselected package cpp. 452s Preparing to unpack .../011-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ... 452s Unpacking cpp (4:15.2.0-4ubuntu1) ... 452s Selecting previously unselected package libcc1-0:amd64. 452s Preparing to unpack .../012-libcc1-0_15.2.0-12ubuntu1_amd64.deb ... 452s Unpacking libcc1-0:amd64 (15.2.0-12ubuntu1) ... 452s Selecting previously unselected package libgomp1:amd64. 452s Preparing to unpack .../013-libgomp1_15.2.0-12ubuntu1_amd64.deb ... 452s Unpacking libgomp1:amd64 (15.2.0-12ubuntu1) ... 452s Selecting previously unselected package libitm1:amd64. 452s Preparing to unpack .../014-libitm1_15.2.0-12ubuntu1_amd64.deb ... 452s Unpacking libitm1:amd64 (15.2.0-12ubuntu1) ... 452s Selecting previously unselected package libasan8:amd64. 452s Preparing to unpack .../015-libasan8_15.2.0-12ubuntu1_amd64.deb ... 452s Unpacking libasan8:amd64 (15.2.0-12ubuntu1) ... 452s Selecting previously unselected package liblsan0:amd64. 452s Preparing to unpack .../016-liblsan0_15.2.0-12ubuntu1_amd64.deb ... 452s Unpacking liblsan0:amd64 (15.2.0-12ubuntu1) ... 452s Selecting previously unselected package libtsan2:amd64. 452s Preparing to unpack .../017-libtsan2_15.2.0-12ubuntu1_amd64.deb ... 452s Unpacking libtsan2:amd64 (15.2.0-12ubuntu1) ... 452s Selecting previously unselected package libubsan1:amd64. 452s Preparing to unpack .../018-libubsan1_15.2.0-12ubuntu1_amd64.deb ... 452s Unpacking libubsan1:amd64 (15.2.0-12ubuntu1) ... 452s Selecting previously unselected package libhwasan0:amd64. 452s Preparing to unpack .../019-libhwasan0_15.2.0-12ubuntu1_amd64.deb ... 452s Unpacking libhwasan0:amd64 (15.2.0-12ubuntu1) ... 452s Selecting previously unselected package libquadmath0:amd64. 452s Preparing to unpack .../020-libquadmath0_15.2.0-12ubuntu1_amd64.deb ... 452s Unpacking libquadmath0:amd64 (15.2.0-12ubuntu1) ... 452s Selecting previously unselected package libgcc-15-dev:amd64. 452s Preparing to unpack .../021-libgcc-15-dev_15.2.0-12ubuntu1_amd64.deb ... 452s Unpacking libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ... 452s Selecting previously unselected package gcc-15-x86-64-linux-gnu. 452s Preparing to unpack .../022-gcc-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 452s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 452s Selecting previously unselected package gcc-15. 452s Preparing to unpack .../023-gcc-15_15.2.0-12ubuntu1_amd64.deb ... 452s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 452s Selecting previously unselected package gcc-x86-64-linux-gnu. 452s Preparing to unpack .../024-gcc-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 452s Unpacking gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 452s Selecting previously unselected package gcc. 452s Preparing to unpack .../025-gcc_4%3a15.2.0-4ubuntu1_amd64.deb ... 452s Unpacking gcc (4:15.2.0-4ubuntu1) ... 452s Selecting previously unselected package libstdc++-15-dev:amd64. 452s Preparing to unpack .../026-libstdc++-15-dev_15.2.0-12ubuntu1_amd64.deb ... 452s Unpacking libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ... 452s Selecting previously unselected package g++-15-x86-64-linux-gnu. 452s Preparing to unpack .../027-g++-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 452s Unpacking g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 452s Selecting previously unselected package g++-15. 452s Preparing to unpack .../028-g++-15_15.2.0-12ubuntu1_amd64.deb ... 452s Unpacking g++-15 (15.2.0-12ubuntu1) ... 452s Selecting previously unselected package g++-x86-64-linux-gnu. 453s Preparing to unpack .../029-g++-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 453s Unpacking g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 453s Selecting previously unselected package g++. 453s Preparing to unpack .../030-g++_4%3a15.2.0-4ubuntu1_amd64.deb ... 453s Unpacking g++ (4:15.2.0-4ubuntu1) ... 453s Selecting previously unselected package build-essential. 453s Preparing to unpack .../031-build-essential_12.12ubuntu2_amd64.deb ... 453s Unpacking build-essential (12.12ubuntu2) ... 453s Selecting previously unselected package dctrl-tools. 453s Preparing to unpack .../032-dctrl-tools_2.24-3build4_amd64.deb ... 453s Unpacking dctrl-tools (2.24-3build4) ... 453s Selecting previously unselected package fonts-dejavu-mono. 453s Preparing to unpack .../033-fonts-dejavu-mono_2.37-8build1_all.deb ... 453s Unpacking fonts-dejavu-mono (2.37-8build1) ... 453s Selecting previously unselected package fonts-dejavu-core. 453s Preparing to unpack .../034-fonts-dejavu-core_2.37-8build1_all.deb ... 453s Unpacking fonts-dejavu-core (2.37-8build1) ... 453s Selecting previously unselected package fontconfig-config. 453s Preparing to unpack .../035-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ... 453s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 453s Selecting previously unselected package libfontconfig1:amd64. 453s Preparing to unpack .../036-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ... 453s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ... 453s Selecting previously unselected package fontconfig. 453s Preparing to unpack .../037-fontconfig_2.17.1-3ubuntu1_amd64.deb ... 453s Unpacking fontconfig (2.17.1-3ubuntu1) ... 453s Selecting previously unselected package fonts-font-awesome. 453s Preparing to unpack .../038-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ... 453s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 453s Selecting previously unselected package fonts-glyphicons-halflings. 453s Preparing to unpack .../039-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 453s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 453s Selecting previously unselected package fonts-mathjax. 453s Preparing to unpack .../040-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ... 453s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ... 453s Selecting previously unselected package gdal-data. 453s Preparing to unpack .../041-gdal-data_3.12.1+dfsg-1_all.deb ... 453s Unpacking gdal-data (3.12.1+dfsg-1) ... 453s Selecting previously unselected package gdal-plugins:amd64. 453s Preparing to unpack .../042-gdal-plugins_3.12.1+dfsg-1_amd64.deb ... 453s Unpacking gdal-plugins:amd64 (3.12.1+dfsg-1) ... 453s Selecting previously unselected package libgfortran5:amd64. 453s Preparing to unpack .../043-libgfortran5_15.2.0-12ubuntu1_amd64.deb ... 453s Unpacking libgfortran5:amd64 (15.2.0-12ubuntu1) ... 453s Selecting previously unselected package libgfortran-15-dev:amd64. 453s Preparing to unpack .../044-libgfortran-15-dev_15.2.0-12ubuntu1_amd64.deb ... 453s Unpacking libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ... 453s Selecting previously unselected package gfortran-15-x86-64-linux-gnu. 453s Preparing to unpack .../045-gfortran-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 453s Unpacking gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 453s Selecting previously unselected package gfortran-15. 453s Preparing to unpack .../046-gfortran-15_15.2.0-12ubuntu1_amd64.deb ... 453s Unpacking gfortran-15 (15.2.0-12ubuntu1) ... 453s Selecting previously unselected package gfortran-x86-64-linux-gnu. 453s Preparing to unpack .../047-gfortran-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 453s Unpacking gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 453s Selecting previously unselected package gfortran. 453s Preparing to unpack .../048-gfortran_4%3a15.2.0-4ubuntu1_amd64.deb ... 453s Unpacking gfortran (4:15.2.0-4ubuntu1) ... 453s Selecting previously unselected package icu-devtools. 453s Preparing to unpack .../049-icu-devtools_78.2-1ubuntu1_amd64.deb ... 453s Unpacking icu-devtools (78.2-1ubuntu1) ... 453s Selecting previously unselected package javascript-common. 453s Preparing to unpack .../050-javascript-common_12+nmu1build1_all.deb ... 453s Unpacking javascript-common (12+nmu1build1) ... 453s Selecting previously unselected package libabsl20260107:amd64. 453s Preparing to unpack .../051-libabsl20260107_20260107.0-1_amd64.deb ... 453s Unpacking libabsl20260107:amd64 (20260107.0-1) ... 453s Selecting previously unselected package libaec0:amd64. 453s Preparing to unpack .../052-libaec0_1.1.5-1_amd64.deb ... 453s Unpacking libaec0:amd64 (1.1.5-1) ... 453s Selecting previously unselected package libaom3:amd64. 453s Preparing to unpack .../053-libaom3_3.13.1-2_amd64.deb ... 453s Unpacking libaom3:amd64 (3.13.1-2) ... 453s Selecting previously unselected package libblas3:amd64. 453s Preparing to unpack .../054-libblas3_3.12.1-7ubuntu1_amd64.deb ... 453s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ... 453s Selecting previously unselected package liblapack3:amd64. 453s Preparing to unpack .../055-liblapack3_3.12.1-7ubuntu1_amd64.deb ... 453s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ... 453s Selecting previously unselected package libarpack2t64:amd64. 453s Preparing to unpack .../056-libarpack2t64_3.9.1-6build1_amd64.deb ... 453s Unpacking libarpack2t64:amd64 (3.9.1-6build1) ... 453s Selecting previously unselected package libsuperlu7:amd64. 453s Preparing to unpack .../057-libsuperlu7_7.0.1+dfsg1-2_amd64.deb ... 453s Unpacking libsuperlu7:amd64 (7.0.1+dfsg1-2) ... 453s Selecting previously unselected package libarmadillo15. 453s Preparing to unpack .../058-libarmadillo15_1%3a15.2.1+dfsg-2_amd64.deb ... 453s Unpacking libarmadillo15 (1:15.2.1+dfsg-2) ... 453s Selecting previously unselected package libdav1d7:amd64. 453s Preparing to unpack .../059-libdav1d7_1.5.3-1_amd64.deb ... 453s Unpacking libdav1d7:amd64 (1.5.3-1) ... 453s Selecting previously unselected package libgav1-2:amd64. 453s Preparing to unpack .../060-libgav1-2_0.20.0-2build1_amd64.deb ... 453s Unpacking libgav1-2:amd64 (0.20.0-2build1) ... 453s Selecting previously unselected package libjpeg-turbo8:amd64. 453s Preparing to unpack .../061-libjpeg-turbo8_2.1.5-4ubuntu3_amd64.deb ... 453s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu3) ... 453s Selecting previously unselected package libjpeg8:amd64. 453s Preparing to unpack .../062-libjpeg8_8c-2ubuntu12_amd64.deb ... 453s Unpacking libjpeg8:amd64 (8c-2ubuntu12) ... 453s Selecting previously unselected package libyuv0:amd64. 453s Preparing to unpack .../063-libyuv0_0.0.1922.20260106-1_amd64.deb ... 453s Unpacking libyuv0:amd64 (0.0.1922.20260106-1) ... 453s Selecting previously unselected package libavif16:amd64. 453s Preparing to unpack .../064-libavif16_1.3.0-1ubuntu3_amd64.deb ... 453s Unpacking libavif16:amd64 (1.3.0-1ubuntu3) ... 453s Selecting previously unselected package libblas-dev:amd64. 453s Preparing to unpack .../065-libblas-dev_3.12.1-7ubuntu1_amd64.deb ... 453s Unpacking libblas-dev:amd64 (3.12.1-7ubuntu1) ... 453s Selecting previously unselected package libsnappy1v5:amd64. 453s Preparing to unpack .../066-libsnappy1v5_1.2.2-2_amd64.deb ... 453s Unpacking libsnappy1v5:amd64 (1.2.2-2) ... 453s Selecting previously unselected package libblosc1:amd64. 453s Preparing to unpack .../067-libblosc1_1.21.5+ds-2_amd64.deb ... 453s Unpacking libblosc1:amd64 (1.21.5+ds-2) ... 453s Selecting previously unselected package libbz2-dev:amd64. 453s Preparing to unpack .../068-libbz2-dev_1.0.8-6build2_amd64.deb ... 453s Unpacking libbz2-dev:amd64 (1.0.8-6build2) ... 453s Selecting previously unselected package libpixman-1-0:amd64. 453s Preparing to unpack .../069-libpixman-1-0_0.46.4-1_amd64.deb ... 453s Unpacking libpixman-1-0:amd64 (0.46.4-1) ... 453s Selecting previously unselected package libxcb-render0:amd64. 453s Preparing to unpack .../070-libxcb-render0_1.17.0-2ubuntu1_amd64.deb ... 453s Unpacking libxcb-render0:amd64 (1.17.0-2ubuntu1) ... 453s Selecting previously unselected package libxcb-shm0:amd64. 453s Preparing to unpack .../071-libxcb-shm0_1.17.0-2ubuntu1_amd64.deb ... 453s Unpacking libxcb-shm0:amd64 (1.17.0-2ubuntu1) ... 453s Selecting previously unselected package libxrender1:amd64. 453s Preparing to unpack .../072-libxrender1_1%3a0.9.12-1build1_amd64.deb ... 453s Unpacking libxrender1:amd64 (1:0.9.12-1build1) ... 453s Selecting previously unselected package libcairo2:amd64. 453s Preparing to unpack .../073-libcairo2_1.18.4-3_amd64.deb ... 453s Unpacking libcairo2:amd64 (1.18.4-3) ... 453s Selecting previously unselected package libcfitsio10t64:amd64. 453s Preparing to unpack .../074-libcfitsio10t64_4.6.3-1_amd64.deb ... 453s Unpacking libcfitsio10t64:amd64 (4.6.3-1) ... 453s Selecting previously unselected package libdatrie1:amd64. 453s Preparing to unpack .../075-libdatrie1_0.2.14-1_amd64.deb ... 453s Unpacking libdatrie1:amd64 (0.2.14-1) ... 453s Selecting previously unselected package libde265-0:amd64. 453s Preparing to unpack .../076-libde265-0_1.0.16-1build1_amd64.deb ... 453s Unpacking libde265-0:amd64 (1.0.16-1build1) ... 454s Selecting previously unselected package libdeflate0:amd64. 454s Preparing to unpack .../077-libdeflate0_1.23-2build1_amd64.deb ... 454s Unpacking libdeflate0:amd64 (1.23-2build1) ... 454s Selecting previously unselected package libdeflate-dev:amd64. 454s Preparing to unpack .../078-libdeflate-dev_1.23-2build1_amd64.deb ... 454s Unpacking libdeflate-dev:amd64 (1.23-2build1) ... 454s Selecting previously unselected package libfyba0t64:amd64. 454s Preparing to unpack .../079-libfyba0t64_4.1.1-11build2_amd64.deb ... 454s Unpacking libfyba0t64:amd64 (4.1.1-11build2) ... 454s Selecting previously unselected package libminizip1t64:amd64. 454s Preparing to unpack .../080-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu3_amd64.deb ... 454s Unpacking libminizip1t64:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu3) ... 454s Selecting previously unselected package libfreexl1:amd64. 454s Preparing to unpack .../081-libfreexl1_2.0.0-1build3_amd64.deb ... 454s Unpacking libfreexl1:amd64 (2.0.0-1build3) ... 454s Selecting 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previously unselected package libodbcinst2:amd64. 454s Preparing to unpack .../114-libodbcinst2_2.3.14-1_amd64.deb ... 454s Unpacking libodbcinst2:amd64 (2.3.14-1) ... 454s Selecting previously unselected package libopenjp2-7:amd64. 454s Preparing to unpack .../115-libopenjp2-7_2.5.4-1_amd64.deb ... 454s Unpacking libopenjp2-7:amd64 (2.5.4-1) ... 454s Selecting previously unselected package libgpgmepp6t64:amd64. 454s Preparing to unpack .../116-libgpgmepp6t64_1.24.2-3ubuntu2_amd64.deb ... 454s Unpacking libgpgmepp6t64:amd64 (1.24.2-3ubuntu2) ... 454s Selecting previously unselected package libpoppler147:amd64. 454s Preparing to unpack .../117-libpoppler147_25.03.0-11.1_amd64.deb ... 454s Unpacking libpoppler147:amd64 (25.03.0-11.1) ... 454s Selecting previously unselected package libpq5:amd64. 454s Preparing to unpack .../118-libpq5_18.1-2build1_amd64.deb ... 454s Unpacking libpq5:amd64 (18.1-2build1) ... 454s Selecting previously unselected package libqhull-r8.0:amd64. 454s Preparing 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455s Selecting previously unselected package libjs-prettify. 455s Preparing to unpack .../145-libjs-prettify_2015.12.04+dfsg-2_all.deb ... 455s Unpacking libjs-prettify (2015.12.04+dfsg-2) ... 455s Selecting previously unselected package liblapack-dev:amd64. 455s Preparing to unpack .../146-liblapack-dev_3.12.1-7ubuntu1_amd64.deb ... 455s Unpacking liblapack-dev:amd64 (3.12.1-7ubuntu1) ... 455s Selecting previously unselected package liblua5.4-0:amd64. 455s Preparing to unpack .../147-liblua5.4-0_5.4.8-1build1_amd64.deb ... 455s Unpacking liblua5.4-0:amd64 (5.4.8-1build1) ... 455s Selecting previously unselected package libncurses-dev:amd64. 455s Preparing to unpack .../148-libncurses-dev_6.6+20251231-1_amd64.deb ... 455s Unpacking libncurses-dev:amd64 (6.6+20251231-1) ... 455s Selecting previously unselected package libthai-data. 455s Preparing to unpack .../149-libthai-data_0.1.30-1_all.deb ... 455s Unpacking libthai-data (0.1.30-1) ... 455s Selecting previously unselected package 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libudunits2-0:amd64 (2.2.28-8) ... 455s Selecting previously unselected package libxt6t64:amd64. 455s Preparing to unpack .../171-libxt6t64_1%3a1.2.1-1.3_amd64.deb ... 455s Unpacking libxt6t64:amd64 (1:1.2.1-1.3) ... 456s Selecting previously unselected package libzstd-dev:amd64. 456s Preparing to unpack .../172-libzstd-dev_1.5.7+dfsg-3_amd64.deb ... 456s Unpacking libzstd-dev:amd64 (1.5.7+dfsg-3) ... 456s Selecting previously unselected package node-bootstrap-sass. 456s Preparing to unpack .../173-node-bootstrap-sass_3.4.3-2_all.deb ... 456s Unpacking node-bootstrap-sass (3.4.3-2) ... 456s Selecting previously unselected package node-html5shiv. 456s Preparing to unpack .../174-node-html5shiv_3.7.3+dfsg-5_all.deb ... 456s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 456s Selecting previously unselected package node-normalize.css. 456s Preparing to unpack .../175-node-normalize.css_8.0.1-5.1_all.deb ... 456s Unpacking node-normalize.css (8.0.1-5.1) ... 456s Selecting previously unselected package pandoc-data. 456s Preparing to unpack .../176-pandoc-data_3.1.11.1-3build1_all.deb ... 456s Unpacking pandoc-data (3.1.11.1-3build1) ... 456s Selecting previously unselected package pandoc. 456s Preparing to unpack .../177-pandoc_3.1.11.1+ds-4_amd64.deb ... 456s Unpacking pandoc (3.1.11.1+ds-4) ... 456s Selecting previously unselected package zip. 456s Preparing to unpack .../178-zip_3.0-15ubuntu3_amd64.deb ... 456s Unpacking zip (3.0-15ubuntu3) ... 456s Selecting previously unselected package unzip. 456s Preparing to unpack .../179-unzip_6.0-29ubuntu1_amd64.deb ... 456s Unpacking unzip (6.0-29ubuntu1) ... 456s Selecting previously unselected package xdg-utils. 456s Preparing to unpack .../180-xdg-utils_1.2.1-2ubuntu2_all.deb ... 456s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 456s Selecting previously unselected package r-base-core. 456s Preparing to unpack .../181-r-base-core_4.5.2-1ubuntu2_amd64.deb ... 456s Unpacking r-base-core (4.5.2-1ubuntu2) ... 456s Selecting previously unselected package liblzma-dev:amd64. 456s Preparing to unpack .../182-liblzma-dev_5.8.2-2_amd64.deb ... 456s Unpacking liblzma-dev:amd64 (5.8.2-2) ... 456s Selecting previously unselected package pkgconf-bin. 456s Preparing to unpack .../183-pkgconf-bin_2.5.1-2_amd64.deb ... 456s Unpacking pkgconf-bin (2.5.1-2) ... 456s Selecting previously unselected package pkgconf:amd64. 456s Preparing to unpack .../184-pkgconf_2.5.1-2_amd64.deb ... 456s Unpacking pkgconf:amd64 (2.5.1-2) ... 456s Selecting previously unselected package libtirpc-dev:amd64. 456s Preparing to unpack .../185-libtirpc-dev_1.3.6+ds-1_amd64.deb ... 456s Unpacking libtirpc-dev:amd64 (1.3.6+ds-1) ... 456s Selecting previously unselected package r-base-dev. 456s Preparing to unpack .../186-r-base-dev_4.5.2-1ubuntu2_all.deb ... 456s Unpacking r-base-dev (4.5.2-1ubuntu2) ... 456s Selecting previously unselected package pkg-r-autopkgtest. 456s Preparing to unpack .../187-pkg-r-autopkgtest_20250812_all.deb ... 456s Unpacking pkg-r-autopkgtest (20250812) ... 456s Selecting previously unselected package r-cran-abind. 456s Preparing to unpack .../188-r-cran-abind_1.4-8-1build1_all.deb ... 456s Unpacking r-cran-abind (1.4-8-1build1) ... 456s Selecting previously unselected package r-cran-cli. 456s Preparing to unpack .../189-r-cran-cli_3.6.5-1_amd64.deb ... 456s Unpacking r-cran-cli (3.6.5-1) ... 456s Selecting previously unselected package r-cran-generics. 456s Preparing to unpack .../190-r-cran-generics_0.1.4-1_all.deb ... 456s Unpacking r-cran-generics (0.1.4-1) ... 456s Selecting previously unselected package r-cran-glue. 456s Preparing to unpack .../191-r-cran-glue_1.8.0-1_amd64.deb ... 456s Unpacking r-cran-glue (1.8.0-1) ... 456s Selecting previously unselected package r-cran-rlang. 456s Preparing to unpack .../192-r-cran-rlang_1.1.6-1_amd64.deb ... 456s Unpacking r-cran-rlang (1.1.6-1) ... 456s Selecting previously unselected package r-cran-lifecycle. 456s Preparing to unpack .../193-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 456s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 456s Selecting previously unselected package r-cran-magrittr. 456s Preparing to unpack .../194-r-cran-magrittr_2.0.4-1_amd64.deb ... 456s Unpacking r-cran-magrittr (2.0.4-1) ... 456s Selecting previously unselected package r-cran-utf8. 456s Preparing to unpack .../195-r-cran-utf8_1.2.6-1_amd64.deb ... 456s Unpacking r-cran-utf8 (1.2.6-1) ... 456s Selecting previously unselected package r-cran-vctrs. 456s Preparing to unpack .../196-r-cran-vctrs_0.6.5-1_amd64.deb ... 456s Unpacking r-cran-vctrs (0.6.5-1) ... 457s Selecting previously unselected package r-cran-pillar. 457s Preparing to unpack .../197-r-cran-pillar_1.11.1+dfsg-1_all.deb ... 457s Unpacking r-cran-pillar (1.11.1+dfsg-1) ... 457s Selecting previously unselected package r-cran-r6. 457s Preparing to unpack .../198-r-cran-r6_2.6.1-1_all.deb ... 457s Unpacking r-cran-r6 (2.6.1-1) ... 457s Selecting previously unselected package r-cran-fansi. 457s Preparing to unpack .../199-r-cran-fansi_1.0.7-1_amd64.deb ... 457s Unpacking r-cran-fansi (1.0.7-1) ... 457s Selecting previously unselected package r-cran-pkgconfig. 457s Preparing to unpack .../200-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 457s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 457s Selecting previously unselected package r-cran-tibble. 457s Preparing to unpack .../201-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 457s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 457s Selecting previously unselected package r-cran-withr. 457s Preparing to unpack .../202-r-cran-withr_3.0.2+dfsg-1_all.deb ... 457s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 457s Selecting previously unselected package r-cran-tidyselect. 457s Preparing to unpack .../203-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 457s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 457s Selecting previously unselected package r-cran-dplyr. 457s Preparing to unpack .../204-r-cran-dplyr_1.1.4-4_amd64.deb ... 457s Unpacking r-cran-dplyr (1.1.4-4) ... 457s Selecting previously unselected package r-cran-purrr. 457s Preparing to unpack .../205-r-cran-purrr_1.0.4-1_amd64.deb ... 457s Unpacking r-cran-purrr (1.0.4-1) ... 457s Selecting previously unselected package r-cran-mass. 457s Preparing to unpack .../206-r-cran-mass_7.3-65-1_amd64.deb ... 457s Unpacking r-cran-mass (7.3-65-1) ... 457s Selecting previously unselected package r-cran-class. 457s Preparing to unpack .../207-r-cran-class_7.3-23-1_amd64.deb ... 457s Unpacking r-cran-class (7.3-23-1) ... 457s Selecting previously unselected package r-cran-proxy. 457s Preparing to unpack .../208-r-cran-proxy_0.4-27-1_amd64.deb ... 457s Unpacking r-cran-proxy (0.4-27-1) ... 457s Selecting previously unselected package r-cran-e1071. 457s Preparing to unpack .../209-r-cran-e1071_1.7-17-1_amd64.deb ... 457s Unpacking r-cran-e1071 (1.7-17-1) ... 457s Selecting previously unselected package r-cran-kernsmooth. 457s Preparing to unpack .../210-r-cran-kernsmooth_2.23-26-1build1_amd64.deb ... 457s Unpacking r-cran-kernsmooth (2.23-26-1build1) ... 457s Selecting previously unselected package r-cran-classint. 457s Preparing to unpack .../211-r-cran-classint_0.4-11+dfsg-1_amd64.deb ... 457s Unpacking r-cran-classint (0.4-11+dfsg-1) ... 457s Selecting previously unselected package r-cran-dbi. 457s Preparing to unpack .../212-r-cran-dbi_1.2.3-1build1_all.deb ... 457s Unpacking r-cran-dbi (1.2.3-1build1) ... 457s Selecting previously unselected package r-cran-littler. 457s Preparing to unpack .../213-r-cran-littler_0.3.22-1_amd64.deb ... 457s Unpacking r-cran-littler (0.3.22-1) ... 457s Selecting previously unselected package r-cran-pkgkitten. 457s Preparing to unpack .../214-r-cran-pkgkitten_0.2.4-1_all.deb ... 457s Unpacking r-cran-pkgkitten (0.2.4-1) ... 457s Selecting previously unselected package r-cran-rcpp. 457s Preparing to unpack .../215-r-cran-rcpp_1.1.1-2_amd64.deb ... 457s Unpacking r-cran-rcpp (1.1.1-2) ... 457s Selecting previously unselected package r-cran-wk. 457s Preparing to unpack .../216-r-cran-wk_0.9.5-1_amd64.deb ... 457s Unpacking r-cran-wk (0.9.5-1) ... 457s Selecting previously unselected package r-cran-s2. 457s Preparing to unpack .../217-r-cran-s2_1.1.9-1build1_amd64.deb ... 457s Unpacking r-cran-s2 (1.1.9-1build1) ... 457s Selecting previously unselected package r-cran-units. 457s Preparing to unpack .../218-r-cran-units_1.0-0+dfsg-1_amd64.deb ... 457s Unpacking r-cran-units (1.0-0+dfsg-1) ... 457s Selecting previously unselected package r-cran-sf. 457s Preparing to unpack .../219-r-cran-sf_1.0-24+dfsg-1_amd64.deb ... 457s Unpacking r-cran-sf (1.0-24+dfsg-1) ... 457s Selecting previously unselected package r-cran-areal. 457s Preparing to unpack .../220-r-cran-areal_0.1.8+dfsg-2_all.deb ... 457s Unpacking r-cran-areal (0.1.8+dfsg-2) ... 457s Selecting previously unselected package r-cran-sys. 457s Preparing to unpack .../221-r-cran-sys_3.4.3-1_amd64.deb ... 457s Unpacking r-cran-sys (3.4.3-1) ... 457s Selecting previously unselected package r-cran-askpass. 457s Preparing to unpack .../222-r-cran-askpass_1.2.1-1_amd64.deb ... 457s Unpacking r-cran-askpass (1.2.1-1) ... 457s Selecting previously unselected package r-cran-base64enc. 457s Preparing to unpack .../223-r-cran-base64enc_0.1-6-1_amd64.deb ... 457s Unpacking r-cran-base64enc (0.1-6-1) ... 457s Selecting previously unselected package r-cran-bdsmatrix. 457s Preparing to unpack .../224-r-cran-bdsmatrix_1.3-7-1_amd64.deb ... 457s Unpacking r-cran-bdsmatrix (1.3-7-1) ... 457s Selecting previously unselected package r-cran-brio. 457s Preparing to unpack .../225-r-cran-brio_1.1.5-1_amd64.deb ... 457s Unpacking r-cran-brio (1.1.5-1) ... 457s Selecting previously unselected package r-cran-fastmap. 457s Preparing to unpack .../226-r-cran-fastmap_1.2.0-1_amd64.deb ... 457s Unpacking r-cran-fastmap (1.2.0-1) ... 457s Selecting previously unselected package r-cran-cachem. 457s Preparing to unpack .../227-r-cran-cachem_1.1.0-1_amd64.deb ... 457s Unpacking r-cran-cachem (1.1.0-1) ... 457s Selecting previously unselected package r-cran-digest. 457s Preparing to unpack .../228-r-cran-digest_0.6.39-1_amd64.deb ... 457s Unpacking r-cran-digest (0.6.39-1) ... 457s Selecting previously unselected package r-cran-htmltools. 457s Preparing to unpack .../229-r-cran-htmltools_0.5.9-1_amd64.deb ... 457s Unpacking r-cran-htmltools (0.5.9-1) ... 457s Selecting previously unselected package r-cran-jquerylib. 457s Preparing to unpack .../230-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ... 457s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ... 457s Selecting previously unselected package r-cran-jsonlite. 457s Preparing to unpack .../231-r-cran-jsonlite_2.0.0+dfsg-1_amd64.deb ... 457s Unpacking r-cran-jsonlite (2.0.0+dfsg-1) ... 457s Selecting previously unselected package r-cran-memoise. 457s Preparing to unpack .../232-r-cran-memoise_2.0.1-1build1_all.deb ... 457s Unpacking r-cran-memoise (2.0.1-1build1) ... 457s Selecting previously unselected package r-cran-mime. 457s Preparing to unpack .../233-r-cran-mime_0.13-1_amd64.deb ... 457s Unpacking r-cran-mime (0.13-1) ... 457s Selecting previously unselected package r-cran-fs. 457s Preparing to unpack .../234-r-cran-fs_1.6.6+dfsg-1_amd64.deb ... 457s Unpacking r-cran-fs (1.6.6+dfsg-1) ... 457s Selecting previously unselected package r-cran-rappdirs. 457s Preparing to unpack .../235-r-cran-rappdirs_0.3.4-1_amd64.deb ... 457s Unpacking r-cran-rappdirs (0.3.4-1) ... 457s Selecting previously unselected package r-cran-sass. 457s Preparing to unpack .../236-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 457s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 457s Selecting previously unselected package r-cran-bslib. 457s Preparing to unpack .../237-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ... 457s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ... 457s Selecting previously unselected package r-cran-cairo. 457s Preparing to unpack .../238-r-cran-cairo_1.7-0-1_amd64.deb ... 457s Unpacking r-cran-cairo (1.7-0-1) ... 457s Selecting previously unselected package r-cran-ps. 457s Preparing to unpack .../239-r-cran-ps_1.9.1-1_amd64.deb ... 457s Unpacking r-cran-ps (1.9.1-1) ... 457s Selecting previously unselected package r-cran-processx. 457s Preparing to unpack .../240-r-cran-processx_3.8.6-1_amd64.deb ... 457s Unpacking r-cran-processx (3.8.6-1) ... 457s Selecting previously unselected package r-cran-callr. 457s Preparing to unpack .../241-r-cran-callr_3.7.6-1_all.deb ... 457s Unpacking r-cran-callr (3.7.6-1) ... 457s Selecting previously unselected package r-cran-cftime. 457s Preparing to unpack .../242-r-cran-cftime_1.7.2-1_all.deb ... 457s Unpacking r-cran-cftime (1.7.2-1) ... 457s Selecting previously unselected package r-cran-cluster. 457s Preparing to unpack .../243-r-cran-cluster_2.1.8.1-1build1_amd64.deb ... 457s Unpacking r-cran-cluster (2.1.8.1-1build1) ... 457s Selecting previously unselected package r-cran-clue. 457s Preparing to unpack .../244-r-cran-clue_0.3-66-1_amd64.deb ... 457s Unpacking r-cran-clue (0.3-66-1) ... 457s Selecting previously unselected package r-cran-codetools. 457s Preparing to unpack .../245-r-cran-codetools_0.2-20-1build1_all.deb ... 457s Unpacking r-cran-codetools (0.2-20-1build1) ... 457s Selecting previously unselected package r-cran-collapse. 457s Preparing to unpack .../246-r-cran-collapse_2.1.6-1_amd64.deb ... 457s Unpacking r-cran-collapse (2.1.6-1) ... 457s Selecting previously unselected package r-cran-commonmark. 457s Preparing to unpack .../247-r-cran-commonmark_2.0.0-1_amd64.deb ... 457s Unpacking r-cran-commonmark (2.0.0-1) ... 457s Selecting previously unselected package r-cran-lazyeval. 457s Preparing to unpack .../248-r-cran-lazyeval_0.2.2-1build2_amd64.deb ... 457s Unpacking r-cran-lazyeval (0.2.2-1build2) ... 457s Selecting previously unselected package r-cran-rex. 458s Preparing to unpack .../249-r-cran-rex_1.2.1-1build1_all.deb ... 458s Unpacking r-cran-rex (1.2.1-1build1) ... 458s Selecting previously unselected package r-cran-curl. 458s Preparing to unpack .../250-r-cran-curl_7.0.0+dfsg-1_amd64.deb ... 458s Unpacking r-cran-curl (7.0.0+dfsg-1) ... 458s Selecting previously unselected package r-cran-openssl. 458s Preparing to unpack .../251-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 458s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 458s Selecting previously unselected package r-cran-httr. 458s Preparing to unpack .../252-r-cran-httr_1.4.7+dfsg-1_all.deb ... 458s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 458s Selecting previously unselected package r-cran-yaml. 458s Preparing to unpack .../253-r-cran-yaml_2.3.10-1_amd64.deb ... 458s Unpacking r-cran-yaml (2.3.10-1) ... 458s Selecting previously unselected package r-cran-covr. 458s Preparing to unpack .../254-r-cran-covr_3.6.5+dfsg-1_amd64.deb ... 458s Unpacking r-cran-covr (3.6.5+dfsg-1) ... 458s Selecting previously unselected package r-cran-cpp11. 458s Preparing to unpack .../255-r-cran-cpp11_0.5.3-1_all.deb ... 458s Unpacking r-cran-cpp11 (0.5.3-1) ... 458s Selecting previously unselected package r-cran-crayon. 458s Preparing to unpack .../256-r-cran-crayon_1.5.3-1_all.deb ... 458s Unpacking r-cran-crayon (1.5.3-1) ... 458s Selecting previously unselected package r-cran-deldir. 458s Preparing to unpack .../257-r-cran-deldir_2.0-4-1build1_amd64.deb ... 458s Unpacking r-cran-deldir (2.0-4-1build1) ... 458s Selecting previously unselected package r-cran-desc. 458s Preparing to unpack .../258-r-cran-desc_1.4.3-1_all.deb ... 458s Unpacking r-cran-desc (1.4.3-1) ... 458s Selecting previously unselected package r-cran-diffobj. 458s Preparing to unpack .../259-r-cran-diffobj_0.3.6-1_amd64.deb ... 458s Unpacking r-cran-diffobj (0.3.6-1) ... 458s Selecting previously unselected package r-cran-evaluate. 458s Preparing to unpack .../260-r-cran-evaluate_1.0.5-1_all.deb ... 458s Unpacking r-cran-evaluate (1.0.5-1) ... 458s Selecting previously unselected package r-cran-farver. 458s Preparing to unpack .../261-r-cran-farver_2.1.2-1_amd64.deb ... 458s Unpacking r-cran-farver (2.1.2-1) ... 458s Selecting previously unselected package r-cran-fnn. 458s Preparing to unpack .../262-r-cran-fnn_1.1.4.1-1_amd64.deb ... 458s Unpacking r-cran-fnn (1.1.4.1-1) ... 458s Selecting previously unselected package r-cran-fontawesome. 458s Preparing to unpack .../263-r-cran-fontawesome_0.5.3-1_all.deb ... 458s Unpacking r-cran-fontawesome (0.5.3-1) ... 458s Selecting previously unselected package r-cran-formula. 458s Preparing to unpack .../264-r-cran-formula_1.2-5-1_all.deb ... 458s Unpacking r-cran-formula (1.2-5-1) ... 458s Selecting previously unselected package r-cran-globals. 458s Preparing to unpack .../265-r-cran-globals_0.19.0-1_all.deb ... 458s Unpacking r-cran-globals (0.19.0-1) ... 458s Selecting previously unselected package r-cran-listenv. 458s Preparing to unpack .../266-r-cran-listenv_0.10.0+dfsg-1_all.deb ... 458s Unpacking r-cran-listenv (0.10.0+dfsg-1) ... 458s Selecting previously unselected package r-cran-parallelly. 458s Preparing to unpack .../267-r-cran-parallelly_1.46.0-1_amd64.deb ... 458s Unpacking r-cran-parallelly (1.46.0-1) ... 458s Selecting previously unselected package r-cran-future. 458s Preparing to unpack .../268-r-cran-future_1.69.0+dfsg-1_all.deb ... 458s Unpacking r-cran-future (1.69.0+dfsg-1) ... 458s Selecting previously unselected package r-cran-future.apply. 458s Preparing to unpack .../269-r-cran-future.apply_1.20.1+dfsg-1_all.deb ... 458s Unpacking r-cran-future.apply (1.20.1+dfsg-1) ... 458s Selecting previously unselected package r-cran-gtable. 458s Preparing to unpack .../270-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 458s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 458s Selecting previously unselected package r-cran-isoband. 458s Preparing to unpack .../271-r-cran-isoband_0.3.0-1_amd64.deb ... 458s Unpacking r-cran-isoband (0.3.0-1) ... 458s Selecting previously unselected package r-cran-s7. 458s Preparing to unpack .../272-r-cran-s7_0.2.1-1_amd64.deb ... 458s Unpacking r-cran-s7 (0.2.1-1) ... 458s Selecting previously unselected package r-cran-labeling. 458s Preparing to unpack .../273-r-cran-labeling_0.4.3-1_all.deb ... 458s Unpacking r-cran-labeling (0.4.3-1) ... 458s Selecting previously unselected package r-cran-rcolorbrewer. 458s Preparing to unpack .../274-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ... 458s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ... 458s Selecting previously unselected package r-cran-viridislite. 458s Preparing to unpack .../275-r-cran-viridislite_0.4.2-2_all.deb ... 458s Unpacking r-cran-viridislite (0.4.2-2) ... 458s Selecting previously unselected package r-cran-scales. 458s Preparing to unpack .../276-r-cran-scales_1.4.0-1_all.deb ... 458s Unpacking r-cran-scales (1.4.0-1) ... 458s Selecting previously unselected package r-cran-ggplot2. 458s Preparing to unpack .../277-r-cran-ggplot2_4.0.1+dfsg-1_all.deb ... 458s Unpacking r-cran-ggplot2 (4.0.1+dfsg-1) ... 458s Selecting previously unselected package r-cran-tweenr. 458s Preparing to unpack .../278-r-cran-tweenr_2.0.3-1_amd64.deb ... 458s Unpacking r-cran-tweenr (2.0.3-1) ... 458s Selecting previously unselected package r-cran-polyclip. 458s Preparing to unpack .../279-r-cran-polyclip_1.10-7-1_amd64.deb ... 458s Unpacking r-cran-polyclip (1.10-7-1) ... 458s Selecting previously unselected package r-cran-systemfonts. 458s Preparing to unpack .../280-r-cran-systemfonts_1.3.1-1_amd64.deb ... 458s Unpacking r-cran-systemfonts (1.3.1-1) ... 458s Selecting previously unselected package r-cran-ggforce. 458s Preparing to unpack .../281-r-cran-ggforce_0.5.0-1_amd64.deb ... 458s Unpacking r-cran-ggforce (0.5.0-1) ... 458s Selecting previously unselected package r-cran-stringi. 458s Preparing to unpack .../282-r-cran-stringi_1.8.4-1build2_amd64.deb ... 458s Unpacking r-cran-stringi (1.8.4-1build2) ... 458s Selecting previously unselected package r-cran-stringr. 458s Preparing to unpack .../283-r-cran-stringr_1.5.1-1_all.deb ... 458s Unpacking r-cran-stringr (1.5.1-1) ... 458s Selecting previously unselected package r-cran-ggthemes. 458s Preparing to unpack .../284-r-cran-ggthemes_5.2.0-1_all.deb ... 458s Unpacking r-cran-ggthemes (5.2.0-1) ... 458s Selecting previously unselected package r-cran-goftest. 458s Preparing to unpack .../285-r-cran-goftest_1.2-3-1build1_amd64.deb ... 458s Unpacking r-cran-goftest (1.2-3-1build1) ... 458s Selecting previously unselected package r-cran-gridextra. 458s Preparing to unpack .../286-r-cran-gridextra_2.3-3build2_all.deb ... 458s Unpacking r-cran-gridextra (2.3-3build2) ... 458s Selecting previously unselected package r-cran-xfun. 458s Preparing to unpack .../287-r-cran-xfun_0.55+dfsg-1_amd64.deb ... 458s Unpacking r-cran-xfun (0.55+dfsg-1) ... 458s Selecting previously unselected package r-cran-highr. 458s Preparing to unpack .../288-r-cran-highr_0.11+dfsg-1_all.deb ... 458s Unpacking r-cran-highr (0.11+dfsg-1) ... 458s Selecting previously unselected package r-cran-later. 458s Preparing to unpack .../289-r-cran-later_1.4.5+dfsg-1_amd64.deb ... 458s Unpacking r-cran-later (1.4.5+dfsg-1) ... 458s Selecting previously unselected package r-cran-promises. 458s Preparing to unpack .../290-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 458s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 458s Selecting previously unselected package r-cran-httpuv. 458s Preparing to unpack .../291-r-cran-httpuv_1.6.16+dfsg-1_amd64.deb ... 458s Unpacking r-cran-httpuv (1.6.16+dfsg-1) ... 458s Selecting previously unselected package r-cran-intervals. 458s Preparing to unpack .../292-r-cran-intervals_0.15.5-1_amd64.deb ... 458s Unpacking r-cran-intervals (0.15.5-1) ... 458s Selecting previously unselected package libjs-mathjax. 458s Preparing to unpack .../293-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ... 458s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ... 459s Selecting previously unselected package r-cran-knitr. 459s Preparing to unpack .../294-r-cran-knitr_1.51+dfsg-1_all.deb ... 459s Unpacking r-cran-knitr (1.51+dfsg-1) ... 459s Selecting previously unselected package r-cran-lattice. 459s Preparing to unpack .../295-r-cran-lattice_0.22-7-1_amd64.deb ... 459s Unpacking r-cran-lattice (0.22-7-1) ... 459s Selecting previously unselected package r-cran-zoo. 459s Preparing to unpack .../296-r-cran-zoo_1.8-15-1_amd64.deb ... 459s Unpacking r-cran-zoo (1.8-15-1) ... 459s Selecting previously unselected package r-cran-lmtest. 459s Preparing to unpack .../297-r-cran-lmtest_0.9.40-1build1_amd64.deb ... 459s Unpacking r-cran-lmtest (0.9.40-1build1) ... 459s Selecting previously unselected package r-cran-lwgeom. 459s Preparing to unpack .../298-r-cran-lwgeom_0.2-14-1_amd64.deb ... 459s Unpacking r-cran-lwgeom (0.2-14-1) ... 459s Selecting previously unselected package r-cran-maps. 459s Preparing to unpack .../299-r-cran-maps_3.4.3-1_amd64.deb ... 459s Unpacking r-cran-maps (3.4.3-1) ... 459s Selecting previously unselected package r-cran-mapdata. 459s Preparing to unpack .../300-r-cran-mapdata_2.3.1-1_amd64.deb ... 459s Unpacking r-cran-mapdata (2.3.1-1) ... 459s Selecting previously unselected package r-cran-matrix. 459s Preparing to unpack .../301-r-cran-matrix_1.7-4-1_amd64.deb ... 459s Unpacking r-cran-matrix (1.7-4-1) ... 459s Selecting previously unselected package r-cran-misctools. 459s Preparing to unpack .../302-r-cran-misctools_0.6-28-1_all.deb ... 459s Unpacking r-cran-misctools (0.6-28-1) ... 459s Selecting previously unselected package r-cran-sandwich. 459s Preparing to unpack .../303-r-cran-sandwich_3.1-1-1build1_all.deb ... 459s Unpacking r-cran-sandwich (3.1-1-1build1) ... 459s Selecting previously unselected package r-cran-maxlik. 459s Preparing to unpack .../304-r-cran-maxlik_1.5-2.2-1_all.deb ... 459s Unpacking r-cran-maxlik (1.5-2.2-1) ... 459s Selecting previously unselected package r-cran-nlme. 459s Preparing to unpack .../305-r-cran-nlme_3.1.168-1_amd64.deb ... 459s Unpacking r-cran-nlme (3.1.168-1) ... 459s Selecting previously unselected package r-cran-mgcv. 459s Preparing to unpack .../306-r-cran-mgcv_1.9-4-1_amd64.deb ... 459s Unpacking r-cran-mgcv (1.9-4-1) ... 459s Selecting previously unselected package r-cran-rnetcdf. 459s Preparing to unpack .../307-r-cran-rnetcdf_2.11-1-1_amd64.deb ... 459s Unpacking r-cran-rnetcdf (2.11-1-1) ... 459s Selecting previously unselected package r-cran-tidyr. 459s Preparing to unpack .../308-r-cran-tidyr_1.3.1-1_amd64.deb ... 459s Unpacking r-cran-tidyr (1.3.1-1) ... 459s Selecting previously unselected package r-cran-ncmeta. 459s Preparing to unpack .../309-r-cran-ncmeta_0.4.0-1_all.deb ... 459s Unpacking r-cran-ncmeta (0.4.0-1) ... 459s Selecting previously unselected package r-cran-stars. 459s Preparing to unpack .../310-r-cran-stars_0.6-8-1_all.deb ... 459s Unpacking r-cran-stars (0.6-8-1) ... 459s Selecting previously unselected package r-cran-ncdfgeom. 459s Preparing to unpack .../311-r-cran-ncdfgeom_1.1.6+dfsg-1_all.deb ... 459s Unpacking r-cran-ncdfgeom (1.1.6+dfsg-1) ... 459s Selecting previously unselected package r-cran-pbapply. 459s Preparing to unpack .../312-r-cran-pbapply_1.7-2-1_all.deb ... 459s Unpacking r-cran-pbapply (1.7-2-1) ... 459s Selecting previously unselected package r-cran-pcict. 459s Preparing to unpack .../313-r-cran-pcict_0.5-4.4-1_amd64.deb ... 459s Unpacking r-cran-pcict (0.5-4.4-1) ... 459s Selecting previously unselected package r-cran-pkgbuild. 459s Preparing to unpack .../314-r-cran-pkgbuild_1.4.8-1_all.deb ... 459s Unpacking r-cran-pkgbuild (1.4.8-1) ... 459s Selecting previously unselected package r-cran-rprojroot. 459s Preparing to unpack .../315-r-cran-rprojroot_2.1.1-1_all.deb ... 459s Unpacking r-cran-rprojroot (2.1.1-1) ... 459s Selecting previously unselected package r-cran-pkgload. 459s Preparing to unpack .../316-r-cran-pkgload_1.4.1-1_all.deb ... 459s Unpacking r-cran-pkgload (1.4.1-1) ... 459s Selecting previously unselected package r-cran-rbibutils. 459s Preparing to unpack .../317-r-cran-rbibutils_2.4.1-1_amd64.deb ... 459s Unpacking r-cran-rbibutils (2.4.1-1) ... 459s Selecting previously unselected package r-cran-rdpack. 459s Preparing to unpack .../318-r-cran-rdpack_2.6.5-1_all.deb ... 459s Unpacking r-cran-rdpack (2.6.5-1) ... 459s Selecting previously unselected package r-cran-plm. 459s Preparing to unpack .../319-r-cran-plm_2.6-7-1_all.deb ... 459s Unpacking r-cran-plm (2.6-7-1) ... 459s Selecting previously unselected package r-cran-praise. 459s Preparing to unpack .../320-r-cran-praise_1.0.0-4build2_all.deb ... 459s Unpacking r-cran-praise (1.0.0-4build2) ... 459s Selecting previously unselected package r-cran-randomforest. 459s Preparing to unpack .../321-r-cran-randomforest_4.7-1.2-1_amd64.deb ... 459s Unpacking r-cran-randomforest (4.7-1.2-1) ... 459s Selecting previously unselected package r-cran-sp. 459s Preparing to unpack .../322-r-cran-sp_1%3a2.2-0+dfsg-1_amd64.deb ... 459s Unpacking r-cran-sp (1:2.2-0+dfsg-1) ... 459s Selecting previously unselected package r-cran-terra. 459s Preparing to unpack .../323-r-cran-terra_1.8-70-1build2_amd64.deb ... 459s Unpacking r-cran-terra (1.8-70-1build2) ... 459s Selecting previously unselected package r-cran-raster. 459s Preparing to unpack .../324-r-cran-raster_3.6-32-1_amd64.deb ... 459s Unpacking r-cran-raster (3.6-32-1) ... 460s Selecting previously unselected package r-cran-tinytex. 460s Preparing to unpack .../325-r-cran-tinytex_0.58-1_all.deb ... 460s Unpacking r-cran-tinytex (0.58-1) ... 460s Selecting previously unselected package libjs-modernizr. 460s Preparing to unpack .../326-libjs-modernizr_3.13.0-0.1build1_all.deb ... 460s Unpacking libjs-modernizr (3.13.0-0.1build1) ... 460s Selecting previously unselected package r-cran-xtable. 460s Preparing to unpack .../327-r-cran-xtable_1%3a1.8-4-2build1_all.deb ... 460s Unpacking r-cran-xtable (1:1.8-4-2build1) ... 460s Selecting previously unselected package r-cran-sourcetools. 460s Preparing to unpack .../328-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 460s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 460s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 460s Preparing to unpack .../329-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 460s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 460s Selecting previously unselected package r-cran-shiny. 460s Preparing to unpack .../330-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 460s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 460s Selecting previously unselected package r-cran-rmarkdown. 460s Preparing to unpack .../331-r-cran-rmarkdown_2.30+dfsg-1_all.deb ... 460s Unpacking r-cran-rmarkdown (2.30+dfsg-1) ... 460s Selecting previously unselected package r-cran-survival. 460s Preparing to unpack .../332-r-cran-survival_3.8-6-1_amd64.deb ... 460s Unpacking r-cran-survival (3.8-6-1) ... 460s Selecting previously unselected package r-cran-rpart. 460s Preparing to unpack .../333-r-cran-rpart_4.1.24-1build1_amd64.deb ... 460s Unpacking r-cran-rpart (4.1.24-1build1) ... 460s Selecting previously unselected package r-cran-xts. 460s Preparing to unpack .../334-r-cran-xts_0.14.1-1_amd64.deb ... 460s Unpacking r-cran-xts (0.14.1-1) ... 460s Selecting previously unselected package r-cran-spacetime. 460s Preparing to unpack .../335-r-cran-spacetime_1.3-3-2_all.deb ... 460s Unpacking r-cran-spacetime (1.3-3-2) ... 460s Selecting previously unselected package r-cran-spatstat.utils. 460s Preparing to unpack .../336-r-cran-spatstat.utils_3.1-3-1_amd64.deb ... 460s Unpacking r-cran-spatstat.utils (3.1-3-1) ... 460s Selecting previously unselected package r-cran-spatstat.data. 460s Preparing to unpack .../337-r-cran-spatstat.data_3.1-6-1_all.deb ... 460s Unpacking r-cran-spatstat.data (3.1-6-1) ... 460s Selecting previously unselected package r-cran-spatstat.univar. 460s Preparing to unpack .../338-r-cran-spatstat.univar_3.1-2-1_amd64.deb 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libheif-plugin-libde265:amd64 (1.21.2-1) ... 463s Setting up libheif1:amd64 (1.21.2-1) ... 463s Setting up libgdal38:amd64 (3.12.1+dfsg-1) ... 463s Setting up r-cran-terra (1.8-70-1build2) ... 463s Setting up r-cran-sf (1.0-24+dfsg-1) ... 463s Setting up r-cran-stars (0.6-8-1) ... 463s Setting up r-cran-areal (0.1.8+dfsg-2) ... 463s Setting up r-cran-raster (3.6-32-1) ... 463s Setting up r-cran-lwgeom (0.2-14-1) ... 463s Setting up r-cran-ncdfgeom (1.1.6+dfsg-1) ... 463s Processing triggers for libc-bin (2.42-2ubuntu4) ... 463s Processing triggers for systemd (259-1ubuntu3) ... 464s Processing triggers for man-db (2.13.1-1) ... 465s Processing triggers for libselinux1:amd64 (3.9-4) ... 465s Processing triggers for install-info (7.2-5) ... 468s autopkgtest [19:44:43]: test environment configured for cross building 468s autopkgtest [19:44:43]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 468s autopkgtest [19:44:43]: test pkg-r-autopkgtest: [----------------------- 468s Test: Try to load the R library stars 468s 468s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 468s Copyright (C) 2025 The R Foundation for Statistical Computing 468s Platform: x86_64-pc-linux-gnu 468s 468s R is free software and comes with ABSOLUTELY NO WARRANTY. 468s You are welcome to redistribute it under certain conditions. 468s Type 'license()' or 'licence()' for distribution details. 468s 468s R is a collaborative project with many contributors. 468s Type 'contributors()' for more information and 468s 'citation()' on how to cite R or R packages in publications. 468s 468s Type 'demo()' for some demos, 'help()' for on-line help, or 468s 'help.start()' for an HTML browser interface to help. 468s Type 'q()' to quit R. 468s 468s > library('stars') 468s Loading required package: abind 468s Loading required package: sf 468s Linking to GEOS 3.14.1, GDAL 3.12.1, PROJ 9.7.1; sf_use_s2() is TRUE 468s > 469s autopkgtest [19:44:44]: test pkg-r-autopkgtest: -----------------------] 469s pkg-r-autopkgtest PASS 469s autopkgtest [19:44:44]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 469s autopkgtest [19:44:44]: @@@@@@@@@@@@@@@@@@@@ summary 469s run-unit-test PASS 469s pkg-r-autopkgtest PASS