0s autopkgtest [17:43:11]: starting date and time: 2026-01-30 17:43:11+0000 0s autopkgtest [17:43:11]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [17:43:11]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.awg8k4i5/out --timeout-copy=6000 --needs-internet=try -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-rnetcdf --apt-upgrade r-cran-stars --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-rnetcdf/2.11-1-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-14.secgroup --name adt-resolute-i386-r-cran-stars-20260130-174310-juju-7f2275-prod-proposed-migration-environment-20-f32be705-1318-4af5-b1be-84e680e5ab0c --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-i386-r-cran-stars-20260130-174310-juju-7f2275-prod-proposed-migration-environment-20-f32be705-1318-4af5-b1be-84e680e5ab0c from image adt/ubuntu-resolute-amd64-server-20260130.img (UUID afba56f8-6ab4-44eb-9e07-036bcbd7054f)... 73s autopkgtest [17:44:24]: testbed dpkg architecture: amd64 73s autopkgtest [17:44:24]: testbed apt version: 3.1.14 74s autopkgtest [17:44:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup 74s autopkgtest [17:44:25]: testbed release detected to be: None 75s autopkgtest [17:44:26]: updating testbed package index (apt update) 75s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 75s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 75s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 75s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 75s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [105 kB] 75s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [30.9 kB] 75s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [4676 B] 75s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1267 kB] 75s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [105 kB] 75s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [122 kB] 75s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [4348 B] 75s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [20.9 kB] 75s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [6164 B] 75s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 75s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1007 kB] 75s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [395 kB] 75s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [30.1 kB] 75s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [4720 B] 75s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [27.4 kB] 75s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [1304 B] 76s Fetched 3256 kB in 1s (4237 kB/s) 77s Reading package lists... 77s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 77s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 77s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 77s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 78s Reading package lists... 78s Reading package lists... 78s Building dependency tree... 78s Reading state information... 78s Calculating upgrade... 78s The following packages will be upgraded: 78s 3cpio bzip2 inetutils-telnet libbz2-1.0 libsqlite3-0 rng-tools-debian telnet 78s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 78s Need to get 1234 kB of archives. 78s After this operation, 18.4 kB disk space will be freed. 78s Get:1 http://ftpmaster.internal/ubuntu resolute/universe amd64 rng-tools-debian amd64 2.6build1 [46.1 kB] 78s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 bzip2 amd64 1.0.8-6build2 [34.3 kB] 78s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-1.0 amd64 1.0.8-6build2 [37.0 kB] 78s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libsqlite3-0 amd64 3.46.1-9 [722 kB] 79s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 inetutils-telnet amd64 2:2.7-2ubuntu1 [107 kB] 79s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 telnet all 0.17+2.7-2ubuntu1 [3636 B] 79s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.13.1-1ubuntu1 [284 kB] 79s dpkg-preconfigure: unable to re-open stdin: No such file or directory 79s Fetched 1234 kB in 0s (3155 kB/s) 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124211 files and directories currently installed.) 79s Preparing to unpack .../rng-tools-debian_2.6build1_amd64.deb ... 79s Unpacking rng-tools-debian (2.6build1) over (2.6) ... 79s Preparing to unpack .../bzip2_1.0.8-6build2_amd64.deb ... 79s Unpacking bzip2 (1.0.8-6build2) over (1.0.8-6build1) ... 79s Preparing to unpack .../libbz2-1.0_1.0.8-6build2_amd64.deb ... 79s Unpacking libbz2-1.0:amd64 (1.0.8-6build2) over (1.0.8-6build1) ... 79s Setting up libbz2-1.0:amd64 (1.0.8-6build2) ... 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124211 files and directories currently installed.) 79s Preparing to unpack .../libsqlite3-0_3.46.1-9_amd64.deb ... 79s Unpacking libsqlite3-0:amd64 (3.46.1-9) over (3.46.1-8) ... 79s Preparing to unpack .../inetutils-telnet_2%3a2.7-2ubuntu1_amd64.deb ... 79s Unpacking inetutils-telnet (2:2.7-2ubuntu1) over (2:2.6-4ubuntu1) ... 79s Preparing to unpack .../telnet_0.17+2.7-2ubuntu1_all.deb ... 79s Unpacking telnet (0.17+2.7-2ubuntu1) over (0.17+2.6-4ubuntu1) ... 80s Preparing to unpack .../3cpio_0.13.1-1ubuntu1_amd64.deb ... 80s Unpacking 3cpio (0.13.1-1ubuntu1) over (0.12.0-1ubuntu1) ... 80s Setting up 3cpio (0.13.1-1ubuntu1) ... 80s Setting up libsqlite3-0:amd64 (3.46.1-9) ... 80s Setting up inetutils-telnet (2:2.7-2ubuntu1) ... 80s Setting up bzip2 (1.0.8-6build2) ... 80s Setting up rng-tools-debian (2.6build1) ... 80s Setting up telnet (0.17+2.7-2ubuntu1) ... 80s Processing triggers for man-db (2.13.1-1) ... 81s Processing triggers for libc-bin (2.42-2ubuntu4) ... 81s autopkgtest [17:44:32]: upgrading testbed (apt dist-upgrade and autopurge) 81s Reading package lists... 82s Building dependency tree... 82s Reading state information... 82s Calculating upgrade... 82s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 82s Reading package lists... 82s Building dependency tree... 82s Reading state information... 82s Solving dependencies... 82s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 83s autopkgtest [17:44:34]: rebooting testbed after setup commands that affected boot 112s autopkgtest [17:45:03]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:49:02 UTC 2026 114s autopkgtest [17:45:05]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-stars 115s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-cran-stars 0.6-8-1 (dsc) [2749 B] 115s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-cran-stars 0.6-8-1 (tar) [4038 kB] 115s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-cran-stars 0.6-8-1 (diff) [4400 B] 116s gpgv: Signature made Wed Feb 19 23:48:57 2025 UTC 116s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 116s gpgv: issuer "plessy@debian.org" 116s gpgv: Can't check signature: No public key 116s dpkg-source: warning: cannot verify inline signature for ./r-cran-stars_0.6-8-1.dsc: no acceptable signature found 116s autopkgtest [17:45:07]: testing package r-cran-stars version 0.6-8-1 116s autopkgtest [17:45:07]: build not needed 118s autopkgtest [17:45:09]: test run-unit-test: preparing testbed 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s Solving dependencies... 118s The following NEW packages will be installed: 118s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 118s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gdal-data 118s gdal-plugins javascript-common libabsl20260107 libaec0 libaom3 118s libarmadillo15 libarpack2t64 libavif16 libblas3 libblosc1 libcairo2 118s libcfitsio10t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libfontconfig1 118s libfreexl1 libfyba0t64 libgav1-2 libgdal38 libgeos-c1t64 libgeos3.14.1 118s libgeotiff5 libgfortran5 libgif7 libgomp1 libgpgmepp6t64 libgraphite2-3 118s libharfbuzz0b libhdf4-0 libhdf5-310 libhdf5-hl-310 libheif-plugin-aomdec 118s libheif-plugin-libde265 libheif1 libhwy1t64 libice6 libjbig0 libjpeg-turbo8 118s libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 118s libjs-highlight.js libjs-jquery libjs-jquery-datatables 118s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 118s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 118s libjs-sifter.js libjs-twitter-bootstrap-datepicker libjxl0.11 libkmlbase1t64 118s libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 libltdl7 118s liblua5.4-0 libminizip1t64 libmuparser2v5 libmysqlclient24 libnetcdf22 118s libodbc2 libodbcinst2 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 118s libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpoppler147 118s libpq5 libproj25 libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 118s libspatialite8t64 libsuperlu7 libsz2 libtcl8.6 libthai-data libthai0 118s libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 libwebp7 118s libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 118s libxt6t64 libyuv0 mysql-common node-bootstrap-sass node-html5shiv 118s node-normalize.css pandoc pandoc-data proj-data r-base-core r-cran-abind 118s r-cran-areal r-cran-askpass r-cran-base64enc r-cran-bdsmatrix r-cran-brio 118s r-cran-bslib r-cran-cachem r-cran-cairo r-cran-callr r-cran-cftime 118s r-cran-class r-cran-classint r-cran-cli r-cran-clue r-cran-cluster 118s r-cran-codetools r-cran-collapse r-cran-commonmark r-cran-covr r-cran-cpp11 118s r-cran-crayon r-cran-cubelyr r-cran-curl r-cran-dbi r-cran-deldir 118s r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 118s r-cran-evaluate r-cran-exactextractr r-cran-fansi r-cran-farver 118s r-cran-fastmap r-cran-fnn r-cran-fontawesome r-cran-formula r-cran-fs 118s r-cran-future r-cran-future.apply r-cran-generics r-cran-ggforce 118s r-cran-ggplot2 r-cran-ggthemes r-cran-globals r-cran-glue r-cran-goftest 118s r-cran-gridextra r-cran-gstat r-cran-gtable r-cran-highr r-cran-htmltools 118s r-cran-httpuv r-cran-httr r-cran-intervals r-cran-isoband r-cran-jquerylib 118s r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later 118s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-listenv 118s r-cran-littler r-cran-lmtest r-cran-lwgeom r-cran-magrittr r-cran-mapdata 118s r-cran-maps r-cran-mass r-cran-matrix r-cran-maxlik r-cran-memoise 118s r-cran-mgcv r-cran-mime r-cran-misctools r-cran-ncdfgeom r-cran-ncmeta 118s r-cran-nlme r-cran-openssl r-cran-parallelly r-cran-pbapply r-cran-pcict 118s r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 118s r-cran-pkgload r-cran-plm r-cran-polyclip r-cran-praise r-cran-processx 118s r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr r-cran-r6 118s r-cran-randomforest r-cran-rappdirs r-cran-raster r-cran-rbibutils 118s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rdpack r-cran-rex 118s r-cran-rlang r-cran-rmarkdown r-cran-rnetcdf r-cran-rpart r-cran-rprojroot 118s r-cran-s2 r-cran-sandwich r-cran-sass r-cran-scales r-cran-sf r-cran-sftime 118s r-cran-shiny r-cran-sourcetools r-cran-sp r-cran-spacetime r-cran-spatstat 118s r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom 118s r-cran-spatstat.linnet r-cran-spatstat.model r-cran-spatstat.random 118s r-cran-spatstat.sparse r-cran-spatstat.univar r-cran-spatstat.utils 118s r-cran-stars r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 118s r-cran-systemfonts r-cran-tensor r-cran-terra r-cran-testthat r-cran-tibble 118s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tweenr r-cran-units 118s r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-waldo 118s r-cran-withr r-cran-wk r-cran-xfun r-cran-xtable r-cran-xts r-cran-yaml 118s r-cran-zoo unixodbc-common unzip x11-common xdg-utils zip 119s 0 upgraded, 292 newly installed, 0 to remove and 0 not upgraded. 119s Need to get 297 MB of archives. 119s After this operation, 779 MB of additional disk space will be used. 119s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 119s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 119s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB] 119s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB] 119s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB] 119s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 119s Get:7 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 119s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 119s Get:9 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-data all 3.12.1+dfsg-1 [278 kB] 119s Get:10 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-plugins amd64 3.12.1+dfsg-1 [26.8 kB] 119s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 javascript-common all 12+nmu1 [4828 B] 119s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libabsl20260107 amd64 20260107.0-0ubuntu2 [587 kB] 119s Get:13 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.5-1 [22.5 kB] 119s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libaom3 amd64 3.13.1-2 [1970 kB] 119s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 119s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-12ubuntu1 [939 kB] 119s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 119s Get:18 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarpack2t64 amd64 3.9.1-6 [108 kB] 119s Get:19 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsuperlu7 amd64 7.0.1+dfsg1-2 [186 kB] 119s Get:20 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarmadillo15 amd64 1:15.2.1+dfsg-2 [109 kB] 119s Get:21 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdav1d7 amd64 1.5.3-1 [626 kB] 119s Get:22 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgav1-2 amd64 0.20.0-2build1 [402 kB] 119s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 119s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 119s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libyuv0 amd64 0.0.1922.20260106-1 [184 kB] 119s Get:26 http://ftpmaster.internal/ubuntu resolute/universe amd64 libavif16 amd64 1.3.0-1ubuntu3 [117 kB] 119s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libsnappy1v5 amd64 1.2.2-2 [30.8 kB] 119s Get:28 http://ftpmaster.internal/ubuntu resolute/universe amd64 libblosc1 amd64 1.21.5+ds-2 [35.8 kB] 119s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 119s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB] 119s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B] 119s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 119s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 119s Get:34 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcfitsio10t64 amd64 4.6.3-1 [549 kB] 119s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB] 119s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libde265-0 amd64 1.0.16-1build1 [172 kB] 119s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 119s Get:38 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfyba0t64 amd64 4.1.1-11build2 [120 kB] 119s Get:39 http://ftpmaster.internal/ubuntu resolute/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [23.5 kB] 119s Get:40 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfreexl1 amd64 2.0.0-1build3 [42.9 kB] 119s Get:41 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos3.14.1 amd64 3.14.1-2 [976 kB] 119s Get:42 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos-c1t64 amd64 3.14.1-2 [116 kB] 119s Get:43 http://ftpmaster.internal/ubuntu resolute/universe amd64 proj-data all 9.7.1-1 [7950 kB] 120s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 120s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 120s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 120s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 120s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 120s Get:49 http://ftpmaster.internal/ubuntu resolute/universe amd64 libproj25 amd64 9.7.1-1 [1499 kB] 120s Get:50 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeotiff5 amd64 1.7.4-1 [60.2 kB] 120s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libgif7 amd64 5.2.2-1ubuntu3 [36.0 kB] 120s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.5-1 [17.9 kB] 120s Get:53 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf4-0 amd64 4.3.1-2 [318 kB] 120s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.6+repack-2 [1433 kB] 120s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-aomdec amd64 1.21.2-1 [14.2 kB] 120s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-libde265 amd64 1.21.2-1 [9978 B] 120s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif1 amd64 1.21.2-1 [544 kB] 120s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwy1t64 amd64 1.3.0-2 [768 kB] 120s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.17-1 [170 kB] 120s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libjxl0.11 amd64 0.11.1-6ubuntu1 [1122 kB] 120s Get:61 http://ftpmaster.internal/ubuntu resolute/universe amd64 liburiparser1 amd64 0.9.8+dfsg-2 [46.8 kB] 120s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlbase1t64 amd64 1.3.0-13 [51.7 kB] 120s Get:63 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmldom1t64 amd64 1.3.0-13 [156 kB] 120s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlengine1t64 amd64 1.3.0-13 [74.1 kB] 120s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-12ubuntu1 [151 kB] 120s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmuparser2v5 amd64 2.3.4-2 [143 kB] 120s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 mysql-common all 5.8+1.1.1ubuntu2 [7002 B] 120s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libmysqlclient24 amd64 8.4.8-0ubuntu1 [1258 kB] 120s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.6+repack-2 [59.9 kB] 120s Get:70 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnetcdf22 amd64 1:4.9.3-1build1 [561 kB] 120s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libltdl7 amd64 2.5.4-9 [43.7 kB] 120s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbc2 amd64 2.3.14-1 [160 kB] 120s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 unixodbc-common all 2.3.14-1 [8792 B] 120s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbcinst2 amd64 2.3.14-1 [32.0 kB] 120s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.4-1 [188 kB] 120s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpgmepp6t64 amd64 1.24.2-3ubuntu2 [124 kB] 120s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libpoppler147 amd64 25.03.0-11.1 [1224 kB] 120s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libpq5 amd64 18.1-2 [155 kB] 120s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-8 [197 kB] 120s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 librttopo1 amd64 1.1.0-4 [205 kB] 120s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 libspatialite8t64 amd64 5.1.0-3ubuntu1 [1927 kB] 120s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3build2 [991 kB] 120s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgdal38 amd64 3.12.1+dfsg-1 [11.4 MB] 121s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 121s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.1-1 [519 kB] 121s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 121s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB] 121s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 121s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB] 121s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 121s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-d3 all 3.5.17-4build1 [136 kB] 121s Get:92 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 121s Get:93 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 121s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 121s Get:95 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 121s Get:96 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 121s Get:97 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B] 121s Get:98 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 121s Get:99 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB] 121s Get:100 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB] 121s Get:101 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-prettify all 2015.12.04+dfsg-2 [41.3 kB] 121s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 liblua5.4-0 amd64 5.4.8-1 [174 kB] 121s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB] 121s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB] 121s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB] 121s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB] 121s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB] 121s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB] 121s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB] 121s Get:110 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1 [16.4 kB] 121s Get:111 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1036 kB] 121s Get:112 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 121s Get:113 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 121s Get:114 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 121s Get:115 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-data all 2.2.28-8 [19.3 kB] 121s Get:116 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-0 amd64 2.2.28-8 [54.6 kB] 121s Get:117 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB] 121s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 121s Get:119 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 121s Get:120 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 121s Get:121 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 121s Get:122 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc amd64 3.1.11.1+ds-4 [27.2 MB] 122s Get:123 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu2 [178 kB] 122s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB] 122s Get:125 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 122s Get:126 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB] 124s Get:127 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-abind all 1.4-8-1build1 [67.0 kB] 124s Get:128 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 124s Get:129 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-generics all 0.1.4-1 [84.0 kB] 124s Get:130 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 124s Get:131 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB] 124s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 124s Get:133 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 124s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 124s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 124s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB] 124s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 124s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fansi amd64 1.0.6-2 [626 kB] 124s Get:139 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 124s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 124s Get:141 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 124s Get:142 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 124s Get:143 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 124s Get:144 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 125s Get:145 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB] 125s Get:146 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 125s Get:147 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 125s Get:148 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-e1071 amd64 1.7-17-1 [579 kB] 125s Get:149 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-kernsmooth amd64 2.23-26-1build1 [93.6 kB] 125s Get:150 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-classint amd64 0.4-11+dfsg-1 [108 kB] 125s Get:151 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbi all 1.2.3-1build1 [855 kB] 125s Get:152 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.21-2 [84.4 kB] 125s Get:153 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 125s Get:154 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB] 125s Get:155 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-wk amd64 0.9.4-1 [1791 kB] 125s Get:156 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s2 amd64 1.1.9-1build1 [1815 kB] 125s Get:157 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-units amd64 0.8-7+dfsg-2 [300 kB] 125s Get:158 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sf amd64 1.0-19+dfsg-2build2 [3298 kB] 126s Get:159 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-areal all 0.1.8+dfsg-2 [1004 kB] 126s Get:160 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 126s Get:161 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 126s Get:162 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-base64enc amd64 0.1-3-3build1 [28.5 kB] 126s Get:163 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bdsmatrix amd64 1.3-7-1 [299 kB] 126s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 126s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 126s Get:166 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 126s Get:167 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB] 126s Get:168 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 126s Get:169 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB] 126s Get:170 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 126s Get:171 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-memoise all 2.0.1-1build1 [54.5 kB] 126s Get:172 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 126s Get:173 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 126s Get:174 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rappdirs amd64 0.3.3-1build1 [49.3 kB] 126s Get:175 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 126s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB] 126s Get:177 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cairo amd64 1.6-2-1 [88.8 kB] 126s Get:178 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB] 126s Get:179 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 126s Get:180 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 126s Get:181 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cftime all 1.7.2-1 [918 kB] 126s Get:182 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cluster amd64 2.1.8.1-1 [579 kB] 126s Get:183 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-clue amd64 0.3-66-1 [968 kB] 127s Get:184 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-codetools all 0.2-20-1build1 [91.1 kB] 127s Get:185 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-collapse amd64 2.1.0-1 [3485 kB] 127s Get:186 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB] 127s Get:187 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lazyeval amd64 0.2.2-1build2 [146 kB] 127s Get:188 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rex all 1.2.1-1build1 [126 kB] 127s Get:189 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-curl amd64 7.0.0+dfsg-1 [202 kB] 127s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 127s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 127s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 127s Get:193 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 127s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB] 127s Get:195 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cpp11 all 0.5.3-1 [242 kB] 127s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cubelyr all 1.0.2-1 [347 kB] 127s Get:197 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 127s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 127s Get:199 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-diffobj amd64 0.3.5-1build1 [1156 kB] 127s Get:200 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 127s Get:201 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lattice amd64 0.22-7-1 [1367 kB] 127s Get:202 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sp amd64 1:2.2-0+dfsg-1 [1444 kB] 127s Get:203 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-terra amd64 1.8-70-1build2 [4344 kB] 128s Get:204 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-raster amd64 3.6-31-2 [3174 kB] 128s Get:205 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-exactextractr amd64 0.10.0-1build2 [578 kB] 128s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 128s Get:207 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB] 128s Get:208 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 128s Get:209 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 128s Get:210 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-globals all 0.18.0-1 [158 kB] 128s Get:211 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-listenv all 0.10.0+dfsg-1 [113 kB] 128s Get:212 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-parallelly amd64 1.42.0-1 [540 kB] 128s Get:213 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 128s Get:214 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future.apply all 1.11.3+dfsg-1 [175 kB] 128s Get:215 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 128s Get:216 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 128s Get:217 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-nlme amd64 3.1.168-1 [2320 kB] 129s Get:218 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrix amd64 1.7-4-1 [4220 kB] 129s Get:219 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mgcv amd64 1.9-4-1 [3556 kB] 129s Get:220 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 129s Get:221 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 129s Get:222 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 129s Get:223 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB] 129s Get:224 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 130s Get:225 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tweenr amd64 2.0.3-1 [410 kB] 130s Get:226 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB] 130s Get:227 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-systemfonts amd64 1.2.1-1 [347 kB] 130s Get:228 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 130s Get:229 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggforce amd64 0.4.2-1 [1777 kB] 130s Get:230 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringi amd64 1.8.4-1build2 [908 kB] 130s Get:231 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 130s Get:232 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggthemes all 5.2.0-1 [760 kB] 130s Get:233 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-goftest amd64 1.2-3-1build1 [60.5 kB] 130s Get:234 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gridextra all 2.3-3build2 [1032 kB] 130s Get:235 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-zoo amd64 1.8-15-1 [1025 kB] 130s Get:236 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sftime all 0.2-0-6 [168 kB] 130s Get:237 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xts amd64 0.14.1-1 [1198 kB] 131s Get:238 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-intervals amd64 0.15.5-1 [602 kB] 131s Get:239 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spacetime all 1.3-3-2 [2780 kB] 131s Get:240 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stars all 0.6-8-1 [4414 kB] 132s Get:241 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gstat amd64 2.1-3-2 [2334 kB] 132s Get:242 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB] 132s Get:243 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 132s Get:244 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 132s Get:245 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 132s Get:246 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 132s Get:247 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 132s Get:248 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 132s Get:249 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lmtest amd64 0.9.40-1build1 [400 kB] 132s Get:250 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lwgeom amd64 0.2-14-1 [463 kB] 132s Get:251 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-maps amd64 3.4.2.1-1 [2352 kB] 132s Get:252 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mapdata amd64 2.3.1-1 [23.5 MB] 133s Get:253 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-misctools all 0.6-28-1 [99.9 kB] 133s Get:254 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sandwich all 3.1-1-1 [1483 kB] 133s Get:255 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-maxlik all 1.5-2.2-1 [1115 kB] 133s Get:256 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-rnetcdf amd64 2.11-1-1 [242 kB] 133s Get:257 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 133s Get:258 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ncmeta all 0.4.0-1 [362 kB] 133s Get:259 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ncdfgeom all 1.1.6+dfsg-1 [4124 kB] 133s Get:260 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 133s Get:261 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pcict amd64 0.5-4.4-1 [94.4 kB] 133s Get:262 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgbuild all 1.4.8-1 [219 kB] 133s Get:263 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rprojroot all 2.1.1-1 [131 kB] 133s Get:264 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgload all 1.4.1-1 [252 kB] 133s Get:265 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rbibutils amd64 2.3-1 [1023 kB] 133s Get:266 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rdpack all 2.6.3-1 [636 kB] 134s Get:267 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plm all 2.6-7-1 [1823 kB] 134s Get:268 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-praise all 1.0.0-4build2 [20.9 kB] 134s Get:269 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-randomforest amd64 4.7-1.2-1 [216 kB] 134s Get:270 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tinytex all 0.58-1 [148 kB] 134s Get:271 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-modernizr all 3.13.0-0.1build1 [100 kB] 134s Get:272 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xtable all 1:1.8-4-2build1 [691 kB] 134s Get:273 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 134s Get:274 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 134s Get:275 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 134s Get:276 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 134s Get:277 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-survival amd64 3.8-6-1 [8274 kB] 134s Get:278 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 134s Get:279 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.utils amd64 3.1-3-1 [387 kB] 134s Get:280 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.data all 3.1-6-1 [4153 kB] 134s Get:281 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.univar amd64 3.1-2-1 [315 kB] 134s Get:282 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.geom amd64 3.3-6-1 [3968 kB] 134s Get:283 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.random amd64 3.3-3-1 [1177 kB] 134s Get:284 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tensor all 1.5-4build1 [16.3 kB] 134s Get:285 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.sparse amd64 3.1-0-1 [221 kB] 135s Get:286 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.explore amd64 3.3-4-1 [3347 kB] 135s Get:287 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.model amd64 3.3-4-1 [3397 kB] 135s Get:288 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.linnet amd64 3.2-5-1 [1509 kB] 135s Get:289 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat amd64 3.3-1-1 [4121 kB] 135s Get:290 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-waldo all 0.6.2-1 [153 kB] 135s Get:291 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 135s Get:292 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 135s Preconfiguring packages ... 135s Fetched 297 MB in 17s (18.0 MB/s) 136s Selecting previously unselected package fonts-dejavu-mono. 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124211 files and directories currently installed.) 136s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8build1_all.deb ... 136s Unpacking fonts-dejavu-mono (2.37-8build1) ... 136s Selecting previously unselected package fonts-dejavu-core. 136s Preparing to unpack .../001-fonts-dejavu-core_2.37-8build1_all.deb ... 136s Unpacking fonts-dejavu-core (2.37-8build1) ... 136s Selecting previously unselected package fontconfig-config. 136s Preparing to unpack .../002-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ... 136s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 136s Selecting previously unselected package libfontconfig1:amd64. 136s Preparing to unpack .../003-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ... 136s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ... 136s Selecting previously unselected package fontconfig. 136s Preparing to unpack .../004-fontconfig_2.17.1-3ubuntu1_amd64.deb ... 136s Unpacking fontconfig (2.17.1-3ubuntu1) ... 136s Selecting previously unselected package fonts-font-awesome. 136s Preparing to unpack .../005-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ... 136s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 136s Selecting previously unselected package fonts-glyphicons-halflings. 136s Preparing to unpack .../006-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 136s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 136s Selecting previously unselected package fonts-mathjax. 136s Preparing to unpack .../007-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ... 136s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ... 136s Selecting previously unselected package gdal-data. 136s Preparing to unpack .../008-gdal-data_3.12.1+dfsg-1_all.deb ... 136s Unpacking gdal-data (3.12.1+dfsg-1) ... 136s Selecting previously unselected package gdal-plugins:amd64. 136s Preparing to unpack .../009-gdal-plugins_3.12.1+dfsg-1_amd64.deb ... 136s Unpacking gdal-plugins:amd64 (3.12.1+dfsg-1) ... 136s Selecting previously unselected package javascript-common. 136s Preparing to unpack .../010-javascript-common_12+nmu1_all.deb ... 136s Unpacking javascript-common (12+nmu1) ... 136s Selecting previously unselected package libabsl20260107:amd64. 136s Preparing to unpack .../011-libabsl20260107_20260107.0-0ubuntu2_amd64.deb ... 136s Unpacking libabsl20260107:amd64 (20260107.0-0ubuntu2) ... 136s Selecting previously unselected package libaec0:amd64. 136s Preparing to unpack .../012-libaec0_1.1.5-1_amd64.deb ... 136s Unpacking libaec0:amd64 (1.1.5-1) ... 136s Selecting previously unselected package libaom3:amd64. 136s Preparing to unpack .../013-libaom3_3.13.1-2_amd64.deb ... 136s Unpacking libaom3:amd64 (3.13.1-2) ... 136s Selecting previously unselected package libblas3:amd64. 136s Preparing to unpack .../014-libblas3_3.12.1-7ubuntu1_amd64.deb ... 136s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ... 136s Selecting previously unselected package libgfortran5:amd64. 136s Preparing to unpack .../015-libgfortran5_15.2.0-12ubuntu1_amd64.deb ... 136s Unpacking libgfortran5:amd64 (15.2.0-12ubuntu1) ... 136s Selecting previously unselected package liblapack3:amd64. 136s Preparing to unpack .../016-liblapack3_3.12.1-7ubuntu1_amd64.deb ... 136s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ... 136s Selecting previously unselected package libarpack2t64:amd64. 136s Preparing to unpack .../017-libarpack2t64_3.9.1-6_amd64.deb ... 136s Unpacking libarpack2t64:amd64 (3.9.1-6) ... 136s Selecting previously unselected package libsuperlu7:amd64. 136s Preparing to unpack .../018-libsuperlu7_7.0.1+dfsg1-2_amd64.deb ... 136s Unpacking libsuperlu7:amd64 (7.0.1+dfsg1-2) ... 136s Selecting previously unselected package libarmadillo15. 136s Preparing to unpack .../019-libarmadillo15_1%3a15.2.1+dfsg-2_amd64.deb ... 136s Unpacking libarmadillo15 (1:15.2.1+dfsg-2) ... 136s Selecting previously unselected package libdav1d7:amd64. 136s Preparing to unpack .../020-libdav1d7_1.5.3-1_amd64.deb ... 136s Unpacking libdav1d7:amd64 (1.5.3-1) ... 136s Selecting previously unselected package libgav1-2:amd64. 136s Preparing to unpack .../021-libgav1-2_0.20.0-2build1_amd64.deb ... 136s Unpacking libgav1-2:amd64 (0.20.0-2build1) ... 136s Selecting previously unselected package libjpeg-turbo8:amd64. 136s Preparing to unpack .../022-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 136s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 136s Selecting previously unselected package libjpeg8:amd64. 136s Preparing to unpack .../023-libjpeg8_8c-2ubuntu11_amd64.deb ... 136s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 136s Selecting previously unselected package libyuv0:amd64. 136s Preparing to unpack .../024-libyuv0_0.0.1922.20260106-1_amd64.deb ... 136s Unpacking libyuv0:amd64 (0.0.1922.20260106-1) ... 136s Selecting previously unselected package libavif16:amd64. 136s Preparing to unpack .../025-libavif16_1.3.0-1ubuntu3_amd64.deb ... 136s Unpacking libavif16:amd64 (1.3.0-1ubuntu3) ... 136s Selecting previously unselected package libsnappy1v5:amd64. 136s Preparing to unpack .../026-libsnappy1v5_1.2.2-2_amd64.deb ... 136s Unpacking libsnappy1v5:amd64 (1.2.2-2) ... 136s Selecting previously unselected package libblosc1:amd64. 136s Preparing to unpack .../027-libblosc1_1.21.5+ds-2_amd64.deb ... 136s Unpacking libblosc1:amd64 (1.21.5+ds-2) ... 136s Selecting previously unselected package libpixman-1-0:amd64. 136s Preparing to unpack .../028-libpixman-1-0_0.46.4-1_amd64.deb ... 136s Unpacking libpixman-1-0:amd64 (0.46.4-1) ... 136s Selecting previously unselected package libxcb-render0:amd64. 136s Preparing to unpack .../029-libxcb-render0_1.17.0-2ubuntu1_amd64.deb ... 136s Unpacking libxcb-render0:amd64 (1.17.0-2ubuntu1) ... 137s Selecting previously unselected package libxcb-shm0:amd64. 137s Preparing to unpack .../030-libxcb-shm0_1.17.0-2ubuntu1_amd64.deb ... 137s Unpacking libxcb-shm0:amd64 (1.17.0-2ubuntu1) ... 137s Selecting previously unselected package libxrender1:amd64. 137s Preparing to unpack .../031-libxrender1_1%3a0.9.12-1_amd64.deb ... 137s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 137s Selecting previously unselected package libcairo2:amd64. 137s Preparing to unpack .../032-libcairo2_1.18.4-3_amd64.deb ... 137s Unpacking libcairo2:amd64 (1.18.4-3) ... 137s Selecting previously unselected package libcfitsio10t64:amd64. 137s Preparing to unpack .../033-libcfitsio10t64_4.6.3-1_amd64.deb ... 137s Unpacking libcfitsio10t64:amd64 (4.6.3-1) ... 137s Selecting previously unselected package libdatrie1:amd64. 137s Preparing to unpack .../034-libdatrie1_0.2.14-1_amd64.deb ... 137s Unpacking libdatrie1:amd64 (0.2.14-1) ... 137s Selecting previously unselected package libde265-0:amd64. 137s Preparing to unpack .../035-libde265-0_1.0.16-1build1_amd64.deb ... 137s Unpacking libde265-0:amd64 (1.0.16-1build1) ... 137s Selecting previously unselected package libdeflate0:amd64. 137s Preparing to unpack .../036-libdeflate0_1.23-2_amd64.deb ... 137s Unpacking libdeflate0:amd64 (1.23-2) ... 137s Selecting previously unselected package libfyba0t64:amd64. 137s Preparing to unpack .../037-libfyba0t64_4.1.1-11build2_amd64.deb ... 137s Unpacking libfyba0t64:amd64 (4.1.1-11build2) ... 137s Selecting previously unselected package libminizip1t64:amd64. 137s Preparing to unpack .../038-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ... 137s Unpacking libminizip1t64:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 137s Selecting previously unselected package libfreexl1:amd64. 137s Preparing to unpack .../039-libfreexl1_2.0.0-1build3_amd64.deb ... 137s Unpacking libfreexl1:amd64 (2.0.0-1build3) ... 137s Selecting previously unselected package libgeos3.14.1:amd64. 137s Preparing to unpack .../040-libgeos3.14.1_3.14.1-2_amd64.deb ... 137s Unpacking libgeos3.14.1:amd64 (3.14.1-2) ... 137s Selecting previously unselected package libgeos-c1t64:amd64. 137s Preparing to unpack .../041-libgeos-c1t64_3.14.1-2_amd64.deb ... 137s Unpacking libgeos-c1t64:amd64 (3.14.1-2) ... 137s Selecting previously unselected package proj-data. 137s Preparing to unpack .../042-proj-data_9.7.1-1_all.deb ... 137s Unpacking proj-data (9.7.1-1) ... 137s Selecting previously unselected package libjbig0:amd64. 137s Preparing to unpack .../043-libjbig0_2.1-6.1ubuntu3_amd64.deb ... 137s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ... 137s Selecting previously unselected package liblerc4:amd64. 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package libheif-plugin-libde265:amd64. 137s Preparing to unpack .../055-libheif-plugin-libde265_1.21.2-1_amd64.deb ... 137s Unpacking libheif-plugin-libde265:amd64 (1.21.2-1) ... 137s Selecting previously unselected package libheif1:amd64. 137s Preparing to unpack .../056-libheif1_1.21.2-1_amd64.deb ... 137s Unpacking libheif1:amd64 (1.21.2-1) ... 137s Selecting previously unselected package libhwy1t64:amd64. 137s Preparing to unpack .../057-libhwy1t64_1.3.0-2_amd64.deb ... 137s Unpacking libhwy1t64:amd64 (1.3.0-2) ... 137s Selecting previously unselected package liblcms2-2:amd64. 137s Preparing to unpack .../058-liblcms2-2_2.17-1_amd64.deb ... 137s Unpacking liblcms2-2:amd64 (2.17-1) ... 137s Selecting previously unselected package libjxl0.11:amd64. 137s Preparing to unpack .../059-libjxl0.11_0.11.1-6ubuntu1_amd64.deb ... 137s Unpacking libjxl0.11:amd64 (0.11.1-6ubuntu1) ... 137s Selecting previously unselected package liburiparser1:amd64. 137s Preparing to unpack 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137s Unpacking libmuparser2v5:amd64 (2.3.4-2) ... 137s Selecting previously unselected package mysql-common. 137s Preparing to unpack .../066-mysql-common_5.8+1.1.1ubuntu2_all.deb ... 137s Unpacking mysql-common (5.8+1.1.1ubuntu2) ... 137s Selecting previously unselected package libmysqlclient24:amd64. 137s Preparing to unpack .../067-libmysqlclient24_8.4.8-0ubuntu1_amd64.deb ... 137s Unpacking libmysqlclient24:amd64 (8.4.8-0ubuntu1) ... 137s Selecting previously unselected package libhdf5-hl-310:amd64. 137s Preparing to unpack .../068-libhdf5-hl-310_1.14.6+repack-2_amd64.deb ... 137s Unpacking libhdf5-hl-310:amd64 (1.14.6+repack-2) ... 137s Selecting previously unselected package libnetcdf22:amd64. 137s Preparing to unpack .../069-libnetcdf22_1%3a4.9.3-1build1_amd64.deb ... 137s Unpacking libnetcdf22:amd64 (1:4.9.3-1build1) ... 137s Selecting previously unselected package libltdl7:amd64. 137s Preparing to unpack .../070-libltdl7_2.5.4-9_amd64.deb ... 137s Unpacking libltdl7:amd64 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package libpaper2:amd64. 138s Preparing to unpack .../107-libpaper2_2.2.5-0.3build1_amd64.deb ... 138s Unpacking libpaper2:amd64 (2.2.5-0.3build1) ... 138s Selecting previously unselected package libpaper-utils. 138s Preparing to unpack .../108-libpaper-utils_2.2.5-0.3build1_amd64.deb ... 138s Unpacking libpaper-utils (2.2.5-0.3build1) ... 138s Selecting previously unselected package libsm6:amd64. 138s Preparing to unpack .../109-libsm6_2%3a1.2.6-1_amd64.deb ... 138s Unpacking libsm6:amd64 (2:1.2.6-1) ... 138s Selecting previously unselected package libtcl8.6:amd64. 138s Preparing to unpack .../110-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... 138s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... 138s Selecting previously unselected package libxft2:amd64. 138s Preparing to unpack .../111-libxft2_2.3.6-1build2_amd64.deb ... 138s Unpacking libxft2:amd64 (2.3.6-1build2) ... 138s Selecting previously unselected package libxss1:amd64. 138s Preparing to unpack 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(3.4.3-2) ... 138s Selecting previously unselected package node-html5shiv. 138s Preparing to unpack .../118-node-html5shiv_3.7.3+dfsg-5_all.deb ... 138s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 139s Selecting previously unselected package node-normalize.css. 139s Preparing to unpack .../119-node-normalize.css_8.0.1-5.1_all.deb ... 139s Unpacking node-normalize.css (8.0.1-5.1) ... 139s Selecting previously unselected package pandoc-data. 139s Preparing to unpack .../120-pandoc-data_3.1.11.1-3build1_all.deb ... 139s Unpacking pandoc-data (3.1.11.1-3build1) ... 139s Selecting previously unselected package pandoc. 139s Preparing to unpack .../121-pandoc_3.1.11.1+ds-4_amd64.deb ... 139s Unpacking pandoc (3.1.11.1+ds-4) ... 139s Selecting previously unselected package zip. 139s Preparing to unpack .../122-zip_3.0-15ubuntu2_amd64.deb ... 139s Unpacking zip (3.0-15ubuntu2) ... 139s Selecting previously unselected package unzip. 139s Preparing to unpack .../123-unzip_6.0-29ubuntu1_amd64.deb 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.../129-r-cran-glue_1.8.0-1_amd64.deb ... 139s Unpacking r-cran-glue (1.8.0-1) ... 139s Selecting previously unselected package r-cran-rlang. 139s Preparing to unpack .../130-r-cran-rlang_1.1.5-3_amd64.deb ... 139s Unpacking r-cran-rlang (1.1.5-3) ... 139s Selecting previously unselected package r-cran-lifecycle. 139s Preparing to unpack .../131-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 139s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 139s Selecting previously unselected package r-cran-magrittr. 139s Preparing to unpack .../132-r-cran-magrittr_2.0.3-1_amd64.deb ... 139s Unpacking r-cran-magrittr (2.0.3-1) ... 139s Selecting previously unselected package r-cran-utf8. 139s Preparing to unpack .../133-r-cran-utf8_1.2.4-1_amd64.deb ... 139s Unpacking r-cran-utf8 (1.2.4-1) ... 139s Selecting previously unselected package r-cran-vctrs. 139s Preparing to unpack .../134-r-cran-vctrs_0.6.5-1_amd64.deb ... 139s Unpacking r-cran-vctrs (0.6.5-1) ... 140s Selecting previously unselected package r-cran-pillar. 140s Preparing to unpack .../135-r-cran-pillar_1.11.1+dfsg-1_all.deb ... 140s Unpacking r-cran-pillar (1.11.1+dfsg-1) ... 140s Selecting previously unselected package r-cran-r6. 140s Preparing to unpack .../136-r-cran-r6_2.6.1-1_all.deb ... 140s Unpacking r-cran-r6 (2.6.1-1) ... 140s Selecting previously unselected package r-cran-fansi. 140s Preparing to unpack .../137-r-cran-fansi_1.0.6-2_amd64.deb ... 140s Unpacking r-cran-fansi (1.0.6-2) ... 140s Selecting previously unselected package r-cran-pkgconfig. 140s Preparing to unpack .../138-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 140s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 140s Selecting previously unselected package r-cran-tibble. 140s Preparing to unpack .../139-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 140s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 140s Selecting previously unselected package r-cran-withr. 140s Preparing to unpack .../140-r-cran-withr_3.0.2+dfsg-1_all.deb ... 140s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 140s Selecting previously unselected package r-cran-tidyselect. 140s Preparing to unpack .../141-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 140s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 140s Selecting previously unselected package r-cran-dplyr. 140s Preparing to unpack .../142-r-cran-dplyr_1.1.4-4_amd64.deb ... 140s Unpacking r-cran-dplyr (1.1.4-4) ... 140s Selecting previously unselected package r-cran-purrr. 140s Preparing to unpack .../143-r-cran-purrr_1.0.4-1_amd64.deb ... 140s Unpacking r-cran-purrr (1.0.4-1) ... 140s Selecting previously unselected package r-cran-mass. 140s Preparing to unpack .../144-r-cran-mass_7.3-65-1_amd64.deb ... 140s Unpacking r-cran-mass (7.3-65-1) ... 140s Selecting previously unselected package r-cran-class. 140s Preparing to unpack .../145-r-cran-class_7.3-23-1_amd64.deb ... 140s Unpacking r-cran-class (7.3-23-1) ... 140s Selecting previously unselected package r-cran-proxy. 140s Preparing to unpack .../146-r-cran-proxy_0.4-27-1_amd64.deb ... 140s Unpacking r-cran-proxy (0.4-27-1) ... 140s Selecting previously unselected package r-cran-e1071. 140s Preparing to unpack .../147-r-cran-e1071_1.7-17-1_amd64.deb ... 140s Unpacking r-cran-e1071 (1.7-17-1) ... 140s Selecting previously unselected package r-cran-kernsmooth. 140s Preparing to unpack .../148-r-cran-kernsmooth_2.23-26-1build1_amd64.deb ... 140s Unpacking r-cran-kernsmooth (2.23-26-1build1) ... 140s Selecting previously unselected package r-cran-classint. 140s Preparing to unpack .../149-r-cran-classint_0.4-11+dfsg-1_amd64.deb ... 140s Unpacking r-cran-classint (0.4-11+dfsg-1) ... 140s Selecting previously unselected package r-cran-dbi. 140s Preparing to unpack .../150-r-cran-dbi_1.2.3-1build1_all.deb ... 140s Unpacking r-cran-dbi (1.2.3-1build1) ... 140s Selecting previously unselected package r-cran-littler. 140s Preparing to unpack .../151-r-cran-littler_0.3.21-2_amd64.deb ... 140s Unpacking r-cran-littler (0.3.21-2) ... 140s Selecting previously unselected package r-cran-pkgkitten. 140s Preparing to unpack .../152-r-cran-pkgkitten_0.2.4-1_all.deb ... 140s Unpacking r-cran-pkgkitten (0.2.4-1) ... 140s Selecting previously unselected package r-cran-rcpp. 140s Preparing to unpack .../153-r-cran-rcpp_1.1.0-1_amd64.deb ... 140s Unpacking r-cran-rcpp (1.1.0-1) ... 140s Selecting previously unselected package r-cran-wk. 140s Preparing to unpack .../154-r-cran-wk_0.9.4-1_amd64.deb ... 140s Unpacking r-cran-wk (0.9.4-1) ... 140s Selecting previously unselected package r-cran-s2. 140s Preparing to unpack .../155-r-cran-s2_1.1.9-1build1_amd64.deb ... 140s Unpacking r-cran-s2 (1.1.9-1build1) ... 140s Selecting previously unselected package r-cran-units. 140s Preparing to unpack .../156-r-cran-units_0.8-7+dfsg-2_amd64.deb ... 140s Unpacking r-cran-units (0.8-7+dfsg-2) ... 140s Selecting previously unselected package r-cran-sf. 140s Preparing to unpack .../157-r-cran-sf_1.0-19+dfsg-2build2_amd64.deb ... 140s Unpacking r-cran-sf (1.0-19+dfsg-2build2) ... 140s Selecting previously unselected package r-cran-areal. 140s Preparing to unpack .../158-r-cran-areal_0.1.8+dfsg-2_all.deb ... 140s Unpacking r-cran-areal (0.1.8+dfsg-2) ... 140s Selecting previously unselected package r-cran-sys. 140s Preparing to unpack .../159-r-cran-sys_3.4.3-1_amd64.deb ... 140s Unpacking r-cran-sys (3.4.3-1) ... 140s Selecting previously unselected package r-cran-askpass. 140s Preparing to unpack .../160-r-cran-askpass_1.2.1-1_amd64.deb ... 140s Unpacking r-cran-askpass (1.2.1-1) ... 140s Selecting previously unselected package r-cran-base64enc. 140s Preparing to unpack .../161-r-cran-base64enc_0.1-3-3build1_amd64.deb ... 140s Unpacking r-cran-base64enc (0.1-3-3build1) ... 140s Selecting previously unselected package r-cran-bdsmatrix. 140s Preparing to unpack .../162-r-cran-bdsmatrix_1.3-7-1_amd64.deb ... 140s Unpacking r-cran-bdsmatrix (1.3-7-1) ... 140s Selecting previously unselected package r-cran-brio. 140s Preparing to unpack .../163-r-cran-brio_1.1.5-1_amd64.deb ... 140s Unpacking r-cran-brio (1.1.5-1) ... 140s Selecting previously unselected package r-cran-fastmap. 140s Preparing to unpack .../164-r-cran-fastmap_1.2.0-1_amd64.deb ... 140s Unpacking r-cran-fastmap (1.2.0-1) ... 140s Selecting previously unselected package r-cran-cachem. 140s Preparing to unpack .../165-r-cran-cachem_1.1.0-1_amd64.deb ... 140s Unpacking r-cran-cachem (1.1.0-1) ... 140s Selecting previously unselected package r-cran-digest. 140s Preparing to unpack .../166-r-cran-digest_0.6.39-1_amd64.deb ... 140s Unpacking r-cran-digest (0.6.39-1) ... 140s Selecting previously unselected package r-cran-htmltools. 140s Preparing to unpack .../167-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 140s Unpacking r-cran-htmltools (0.5.8.1-1) ... 140s Selecting previously unselected package r-cran-jquerylib. 140s Preparing to unpack .../168-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ... 140s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ... 140s Selecting previously unselected package r-cran-jsonlite. 140s Preparing to unpack .../169-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 140s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 140s Selecting previously unselected package r-cran-memoise. 140s Preparing to unpack .../170-r-cran-memoise_2.0.1-1build1_all.deb ... 140s Unpacking r-cran-memoise (2.0.1-1build1) ... 140s Selecting previously unselected package r-cran-mime. 140s Preparing to unpack .../171-r-cran-mime_0.12-2_amd64.deb ... 140s Unpacking r-cran-mime (0.12-2) ... 140s Selecting previously unselected package r-cran-fs. 140s Preparing to unpack .../172-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 140s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 140s Selecting previously unselected package r-cran-rappdirs. 140s Preparing to unpack .../173-r-cran-rappdirs_0.3.3-1build1_amd64.deb ... 140s Unpacking r-cran-rappdirs (0.3.3-1build1) ... 140s Selecting previously unselected package r-cran-sass. 140s Preparing to unpack .../174-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 140s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 140s Selecting previously unselected package r-cran-bslib. 140s Preparing to unpack .../175-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ... 140s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ... 140s Selecting previously unselected package r-cran-cairo. 140s Preparing to unpack .../176-r-cran-cairo_1.6-2-1_amd64.deb ... 140s Unpacking r-cran-cairo (1.6-2-1) ... 140s Selecting previously unselected package r-cran-ps. 140s Preparing to unpack .../177-r-cran-ps_1.9.0-1_amd64.deb ... 140s Unpacking r-cran-ps (1.9.0-1) ... 140s Selecting previously unselected package r-cran-processx. 140s Preparing to unpack .../178-r-cran-processx_3.8.6-1_amd64.deb ... 140s Unpacking r-cran-processx (3.8.6-1) ... 140s Selecting previously unselected package r-cran-callr. 140s Preparing to unpack .../179-r-cran-callr_3.7.6-1_all.deb ... 140s Unpacking r-cran-callr (3.7.6-1) ... 141s Selecting previously unselected package r-cran-cftime. 141s Preparing to unpack .../180-r-cran-cftime_1.7.2-1_all.deb ... 141s Unpacking r-cran-cftime (1.7.2-1) ... 141s Selecting previously unselected package r-cran-cluster. 141s Preparing to unpack .../181-r-cran-cluster_2.1.8.1-1_amd64.deb ... 141s Unpacking r-cran-cluster (2.1.8.1-1) ... 141s Selecting previously unselected package r-cran-clue. 141s Preparing to unpack .../182-r-cran-clue_0.3-66-1_amd64.deb ... 141s Unpacking r-cran-clue (0.3-66-1) ... 141s Selecting previously unselected package r-cran-codetools. 141s Preparing to unpack .../183-r-cran-codetools_0.2-20-1build1_all.deb ... 141s Unpacking r-cran-codetools (0.2-20-1build1) ... 141s Selecting previously unselected package r-cran-collapse. 141s Preparing to unpack .../184-r-cran-collapse_2.1.0-1_amd64.deb ... 141s Unpacking r-cran-collapse (2.1.0-1) ... 141s Selecting previously unselected package r-cran-commonmark. 141s Preparing to unpack .../185-r-cran-commonmark_1.9.5-1_amd64.deb ... 141s Unpacking r-cran-commonmark (1.9.5-1) ... 141s Selecting previously unselected package r-cran-lazyeval. 141s Preparing to unpack .../186-r-cran-lazyeval_0.2.2-1build2_amd64.deb ... 141s Unpacking r-cran-lazyeval (0.2.2-1build2) ... 141s Selecting previously unselected package r-cran-rex. 141s Preparing to unpack .../187-r-cran-rex_1.2.1-1build1_all.deb ... 141s Unpacking r-cran-rex (1.2.1-1build1) ... 141s Selecting previously unselected package r-cran-curl. 141s Preparing to unpack .../188-r-cran-curl_7.0.0+dfsg-1_amd64.deb ... 141s Unpacking r-cran-curl (7.0.0+dfsg-1) ... 141s Selecting previously unselected package r-cran-openssl. 141s Preparing to unpack .../189-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 141s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 141s Selecting previously unselected package r-cran-httr. 141s Preparing to unpack .../190-r-cran-httr_1.4.7+dfsg-1_all.deb ... 141s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 141s Selecting previously unselected package r-cran-crayon. 141s Preparing to unpack .../191-r-cran-crayon_1.5.3-1_all.deb ... 141s Unpacking r-cran-crayon (1.5.3-1) ... 141s Selecting previously unselected package r-cran-yaml. 141s Preparing to unpack .../192-r-cran-yaml_2.3.10-1_amd64.deb ... 141s Unpacking r-cran-yaml (2.3.10-1) ... 141s Selecting previously unselected package r-cran-covr. 141s Preparing to unpack .../193-r-cran-covr_3.6.4+dfsg-1_amd64.deb ... 141s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 141s Selecting previously unselected package r-cran-cpp11. 141s Preparing to unpack .../194-r-cran-cpp11_0.5.3-1_all.deb ... 141s Unpacking r-cran-cpp11 (0.5.3-1) ... 141s Selecting previously unselected package r-cran-cubelyr. 141s Preparing to unpack .../195-r-cran-cubelyr_1.0.2-1_all.deb ... 141s Unpacking r-cran-cubelyr (1.0.2-1) ... 141s Selecting previously unselected package r-cran-deldir. 141s Preparing to unpack .../196-r-cran-deldir_2.0-4-1build1_amd64.deb ... 141s Unpacking r-cran-deldir (2.0-4-1build1) ... 141s Selecting previously unselected package r-cran-desc. 141s Preparing to unpack .../197-r-cran-desc_1.4.3-1_all.deb ... 141s Unpacking r-cran-desc (1.4.3-1) ... 141s Selecting previously unselected package r-cran-diffobj. 141s Preparing to unpack .../198-r-cran-diffobj_0.3.5-1build1_amd64.deb ... 141s Unpacking r-cran-diffobj (0.3.5-1build1) ... 141s Selecting previously unselected package r-cran-evaluate. 141s Preparing to unpack .../199-r-cran-evaluate_1.0.3-1_all.deb ... 141s Unpacking r-cran-evaluate (1.0.3-1) ... 141s Selecting previously unselected package r-cran-lattice. 141s Preparing to unpack .../200-r-cran-lattice_0.22-7-1_amd64.deb ... 141s Unpacking r-cran-lattice (0.22-7-1) ... 141s Selecting previously unselected package r-cran-sp. 141s Preparing to unpack .../201-r-cran-sp_1%3a2.2-0+dfsg-1_amd64.deb ... 141s Unpacking r-cran-sp (1:2.2-0+dfsg-1) ... 141s Selecting previously unselected package r-cran-terra. 141s Preparing to unpack .../202-r-cran-terra_1.8-70-1build2_amd64.deb ... 141s Unpacking r-cran-terra (1.8-70-1build2) ... 141s Selecting previously unselected package r-cran-raster. 141s Preparing to unpack .../203-r-cran-raster_3.6-31-2_amd64.deb ... 141s Unpacking r-cran-raster (3.6-31-2) ... 141s Selecting previously unselected package r-cran-exactextractr. 141s Preparing to unpack .../204-r-cran-exactextractr_0.10.0-1build2_amd64.deb ... 141s Unpacking r-cran-exactextractr (0.10.0-1build2) ... 141s Selecting previously unselected package r-cran-farver. 141s Preparing to unpack .../205-r-cran-farver_2.1.2-1_amd64.deb ... 141s Unpacking r-cran-farver (2.1.2-1) ... 141s Selecting previously unselected package r-cran-fnn. 141s Preparing to unpack .../206-r-cran-fnn_1.1.4.1-1_amd64.deb ... 141s Unpacking r-cran-fnn (1.1.4.1-1) ... 141s Selecting previously unselected package r-cran-fontawesome. 141s Preparing to unpack .../207-r-cran-fontawesome_0.5.3-1_all.deb ... 141s Unpacking r-cran-fontawesome (0.5.3-1) ... 141s Selecting previously unselected package r-cran-formula. 141s Preparing to unpack .../208-r-cran-formula_1.2-5-1_all.deb ... 141s Unpacking r-cran-formula (1.2-5-1) ... 141s Selecting previously unselected package r-cran-globals. 141s Preparing to unpack .../209-r-cran-globals_0.18.0-1_all.deb ... 141s Unpacking r-cran-globals (0.18.0-1) ... 141s Selecting previously unselected package r-cran-listenv. 141s Preparing to unpack .../210-r-cran-listenv_0.10.0+dfsg-1_all.deb ... 141s Unpacking r-cran-listenv (0.10.0+dfsg-1) ... 141s Selecting previously unselected package r-cran-parallelly. 141s Preparing to unpack .../211-r-cran-parallelly_1.42.0-1_amd64.deb ... 141s Unpacking r-cran-parallelly (1.42.0-1) ... 141s Selecting previously unselected package r-cran-future. 141s Preparing to unpack .../212-r-cran-future_1.34.0+dfsg-1_all.deb ... 141s Unpacking r-cran-future (1.34.0+dfsg-1) ... 141s Selecting previously unselected package r-cran-future.apply. 141s Preparing to unpack .../213-r-cran-future.apply_1.11.3+dfsg-1_all.deb ... 141s Unpacking r-cran-future.apply (1.11.3+dfsg-1) ... 141s Selecting previously unselected package r-cran-gtable. 141s Preparing to unpack .../214-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 141s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 141s Selecting previously unselected package r-cran-isoband. 141s Preparing to unpack .../215-r-cran-isoband_0.2.7-1_amd64.deb ... 141s Unpacking r-cran-isoband (0.2.7-1) ... 141s Selecting previously unselected package r-cran-nlme. 141s Preparing to unpack .../216-r-cran-nlme_3.1.168-1_amd64.deb ... 141s Unpacking r-cran-nlme (3.1.168-1) ... 141s Selecting previously unselected package r-cran-matrix. 141s Preparing to unpack .../217-r-cran-matrix_1.7-4-1_amd64.deb ... 141s Unpacking r-cran-matrix (1.7-4-1) ... 141s Selecting previously unselected package r-cran-mgcv. 141s Preparing to unpack .../218-r-cran-mgcv_1.9-4-1_amd64.deb ... 141s Unpacking r-cran-mgcv (1.9-4-1) ... 141s Selecting previously unselected package r-cran-labeling. 141s Preparing to unpack .../219-r-cran-labeling_0.4.3-1_all.deb ... 141s Unpacking r-cran-labeling (0.4.3-1) ... 141s Selecting previously unselected package r-cran-rcolorbrewer. 141s Preparing to unpack .../220-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ... 141s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ... 141s Selecting previously unselected package r-cran-viridislite. 141s Preparing to unpack .../221-r-cran-viridislite_0.4.2-2_all.deb ... 141s Unpacking r-cran-viridislite (0.4.2-2) ... 141s Selecting previously unselected package r-cran-scales. 141s Preparing to unpack .../222-r-cran-scales_1.4.0-1_all.deb ... 141s Unpacking r-cran-scales (1.4.0-1) ... 141s Selecting previously unselected package r-cran-ggplot2. 141s Preparing to unpack .../223-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 141s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 142s Selecting previously unselected package r-cran-tweenr. 142s Preparing to unpack .../224-r-cran-tweenr_2.0.3-1_amd64.deb ... 142s Unpacking r-cran-tweenr (2.0.3-1) ... 142s Selecting previously unselected package r-cran-polyclip. 142s Preparing to unpack .../225-r-cran-polyclip_1.10-7-1_amd64.deb ... 142s Unpacking r-cran-polyclip (1.10-7-1) ... 142s Selecting previously unselected package r-cran-systemfonts. 142s Preparing to unpack .../226-r-cran-systemfonts_1.2.1-1_amd64.deb ... 142s Unpacking r-cran-systemfonts (1.2.1-1) ... 142s Selecting previously unselected package r-cran-rcppeigen. 142s Preparing to unpack .../227-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 142s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 142s Selecting previously unselected package r-cran-ggforce. 142s Preparing to unpack .../228-r-cran-ggforce_0.4.2-1_amd64.deb ... 142s Unpacking r-cran-ggforce (0.4.2-1) ... 142s Selecting previously unselected package r-cran-stringi. 142s Preparing to unpack .../229-r-cran-stringi_1.8.4-1build2_amd64.deb ... 142s Unpacking r-cran-stringi (1.8.4-1build2) ... 142s Selecting previously unselected package r-cran-stringr. 142s Preparing to unpack .../230-r-cran-stringr_1.5.1-1_all.deb ... 142s Unpacking r-cran-stringr (1.5.1-1) ... 142s Selecting previously unselected package r-cran-ggthemes. 142s Preparing to unpack .../231-r-cran-ggthemes_5.2.0-1_all.deb ... 142s Unpacking r-cran-ggthemes (5.2.0-1) ... 142s Selecting previously unselected package r-cran-goftest. 142s Preparing to unpack .../232-r-cran-goftest_1.2-3-1build1_amd64.deb ... 142s Unpacking r-cran-goftest (1.2-3-1build1) ... 142s Selecting previously unselected package r-cran-gridextra. 142s Preparing to unpack .../233-r-cran-gridextra_2.3-3build2_all.deb ... 142s Unpacking r-cran-gridextra (2.3-3build2) ... 142s Selecting previously unselected package r-cran-zoo. 142s Preparing to unpack .../234-r-cran-zoo_1.8-15-1_amd64.deb ... 142s Unpacking r-cran-zoo (1.8-15-1) ... 142s Selecting previously unselected package r-cran-sftime. 142s Preparing to unpack .../235-r-cran-sftime_0.2-0-6_all.deb ... 142s Unpacking r-cran-sftime (0.2-0-6) ... 142s Selecting previously unselected package r-cran-xts. 142s Preparing to unpack .../236-r-cran-xts_0.14.1-1_amd64.deb ... 142s Unpacking r-cran-xts (0.14.1-1) ... 142s Selecting previously unselected package r-cran-intervals. 142s Preparing to unpack .../237-r-cran-intervals_0.15.5-1_amd64.deb ... 142s Unpacking r-cran-intervals (0.15.5-1) ... 142s Selecting previously unselected package r-cran-spacetime. 142s Preparing to unpack .../238-r-cran-spacetime_1.3-3-2_all.deb ... 142s Unpacking r-cran-spacetime (1.3-3-2) ... 142s Selecting previously unselected package r-cran-stars. 142s Preparing to unpack .../239-r-cran-stars_0.6-8-1_all.deb ... 142s Unpacking r-cran-stars (0.6-8-1) ... 142s Selecting previously unselected package r-cran-gstat. 142s Preparing to unpack .../240-r-cran-gstat_2.1-3-2_amd64.deb ... 142s Unpacking r-cran-gstat (2.1-3-2) ... 142s Selecting previously unselected package r-cran-xfun. 142s Preparing to unpack .../241-r-cran-xfun_0.55+dfsg-1_amd64.deb ... 142s Unpacking r-cran-xfun (0.55+dfsg-1) ... 142s Selecting previously unselected package r-cran-highr. 142s Preparing to unpack .../242-r-cran-highr_0.11+dfsg-1_all.deb ... 142s Unpacking r-cran-highr (0.11+dfsg-1) ... 142s Selecting previously unselected package r-cran-later. 142s Preparing to unpack .../243-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 142s Unpacking r-cran-later (1.4.1+dfsg-1) ... 142s Selecting previously unselected package r-cran-promises. 142s Preparing to unpack .../244-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 142s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 142s Selecting previously unselected package r-cran-httpuv. 142s Preparing to unpack .../245-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 142s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 142s Selecting previously unselected package libjs-mathjax. 142s Preparing to unpack .../246-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ... 142s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ... 142s Selecting previously unselected package r-cran-knitr. 142s Preparing to unpack .../247-r-cran-knitr_1.51+dfsg-1_all.deb ... 142s Unpacking r-cran-knitr (1.51+dfsg-1) ... 142s Selecting previously unselected package r-cran-lmtest. 142s Preparing to unpack .../248-r-cran-lmtest_0.9.40-1build1_amd64.deb ... 142s Unpacking r-cran-lmtest (0.9.40-1build1) ... 142s Selecting previously unselected package r-cran-lwgeom. 142s Preparing to unpack .../249-r-cran-lwgeom_0.2-14-1_amd64.deb ... 142s Unpacking r-cran-lwgeom (0.2-14-1) ... 142s Selecting previously unselected package r-cran-maps. 142s Preparing to unpack .../250-r-cran-maps_3.4.2.1-1_amd64.deb ... 142s Unpacking r-cran-maps (3.4.2.1-1) ... 142s Selecting previously unselected package r-cran-mapdata. 142s Preparing to unpack .../251-r-cran-mapdata_2.3.1-1_amd64.deb ... 142s Unpacking r-cran-mapdata (2.3.1-1) ... 143s Selecting previously unselected package r-cran-misctools. 143s Preparing to unpack .../252-r-cran-misctools_0.6-28-1_all.deb ... 143s Unpacking r-cran-misctools (0.6-28-1) ... 143s Selecting previously unselected package r-cran-sandwich. 143s Preparing to unpack .../253-r-cran-sandwich_3.1-1-1_all.deb ... 143s Unpacking r-cran-sandwich (3.1-1-1) ... 143s Selecting previously unselected package r-cran-maxlik. 143s Preparing to unpack .../254-r-cran-maxlik_1.5-2.2-1_all.deb ... 143s Unpacking r-cran-maxlik (1.5-2.2-1) ... 143s Selecting previously unselected package r-cran-rnetcdf. 143s Preparing to unpack .../255-r-cran-rnetcdf_2.11-1-1_amd64.deb ... 143s Unpacking r-cran-rnetcdf (2.11-1-1) ... 143s Selecting previously unselected package r-cran-tidyr. 143s Preparing to unpack .../256-r-cran-tidyr_1.3.1-1_amd64.deb ... 143s Unpacking r-cran-tidyr (1.3.1-1) ... 143s Selecting previously unselected package r-cran-ncmeta. 143s Preparing to unpack .../257-r-cran-ncmeta_0.4.0-1_all.deb ... 143s Unpacking r-cran-ncmeta (0.4.0-1) ... 143s Selecting previously unselected package r-cran-ncdfgeom. 143s Preparing to unpack .../258-r-cran-ncdfgeom_1.1.6+dfsg-1_all.deb ... 143s Unpacking r-cran-ncdfgeom (1.1.6+dfsg-1) ... 143s Selecting previously unselected package r-cran-pbapply. 143s Preparing to unpack .../259-r-cran-pbapply_1.7-2-1_all.deb ... 143s Unpacking r-cran-pbapply (1.7-2-1) ... 143s Selecting previously unselected package r-cran-pcict. 143s Preparing to unpack .../260-r-cran-pcict_0.5-4.4-1_amd64.deb ... 143s Unpacking r-cran-pcict (0.5-4.4-1) ... 143s Selecting previously unselected package r-cran-pkgbuild. 143s Preparing to unpack .../261-r-cran-pkgbuild_1.4.8-1_all.deb ... 143s Unpacking r-cran-pkgbuild (1.4.8-1) ... 143s Selecting previously unselected package r-cran-rprojroot. 143s Preparing to unpack .../262-r-cran-rprojroot_2.1.1-1_all.deb ... 143s Unpacking r-cran-rprojroot (2.1.1-1) ... 143s Selecting previously unselected package r-cran-pkgload. 143s Preparing to unpack .../263-r-cran-pkgload_1.4.1-1_all.deb ... 143s Unpacking r-cran-pkgload (1.4.1-1) ... 143s Selecting previously unselected package r-cran-rbibutils. 143s Preparing to unpack .../264-r-cran-rbibutils_2.3-1_amd64.deb ... 143s Unpacking r-cran-rbibutils (2.3-1) ... 143s Selecting previously unselected package r-cran-rdpack. 143s Preparing to unpack .../265-r-cran-rdpack_2.6.3-1_all.deb ... 143s Unpacking r-cran-rdpack (2.6.3-1) ... 143s Selecting previously unselected package r-cran-plm. 143s Preparing to unpack .../266-r-cran-plm_2.6-7-1_all.deb ... 143s Unpacking r-cran-plm (2.6-7-1) ... 143s Selecting previously unselected package r-cran-praise. 143s Preparing to unpack .../267-r-cran-praise_1.0.0-4build2_all.deb ... 143s Unpacking r-cran-praise (1.0.0-4build2) ... 143s Selecting previously unselected package r-cran-randomforest. 143s Preparing to unpack .../268-r-cran-randomforest_4.7-1.2-1_amd64.deb ... 143s Unpacking r-cran-randomforest (4.7-1.2-1) ... 143s Selecting previously unselected package r-cran-tinytex. 143s Preparing to unpack .../269-r-cran-tinytex_0.58-1_all.deb ... 143s Unpacking r-cran-tinytex (0.58-1) ... 143s Selecting previously unselected package libjs-modernizr. 143s Preparing to unpack .../270-libjs-modernizr_3.13.0-0.1build1_all.deb ... 143s Unpacking libjs-modernizr (3.13.0-0.1build1) ... 143s Selecting previously unselected package r-cran-xtable. 143s Preparing to unpack .../271-r-cran-xtable_1%3a1.8-4-2build1_all.deb ... 143s Unpacking r-cran-xtable (1:1.8-4-2build1) ... 143s Selecting previously unselected package r-cran-sourcetools. 143s Preparing to unpack .../272-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 143s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 143s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 143s Preparing to unpack .../273-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 143s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 143s Selecting previously unselected package r-cran-shiny. 143s Preparing to unpack .../274-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 143s Unpacking 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r-cran-sf (1.0-19+dfsg-2build2) ... 147s Setting up r-cran-stars (0.6-8-1) ... 147s Setting up r-cran-sftime (0.2-0-6) ... 147s Setting up r-cran-areal (0.1.8+dfsg-2) ... 147s Setting up r-cran-gstat (2.1-3-2) ... 147s Setting up r-cran-raster (3.6-31-2) ... 147s Setting up r-cran-lwgeom (0.2-14-1) ... 147s Setting up r-cran-exactextractr (0.10.0-1build2) ... 147s Setting up r-cran-ncdfgeom (1.1.6+dfsg-1) ... 147s Processing triggers for libc-bin (2.42-2ubuntu4) ... 147s Processing triggers for man-db (2.13.1-1) ... 148s Processing triggers for install-info (7.2-5) ... 149s autopkgtest [17:45:40]: test environment configured for cross building 149s autopkgtest [17:45:40]: test run-unit-test: [----------------------- 149s BEGIN TEST aggregate.R 149s 149s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 149s Copyright (C) 2025 The R Foundation for Statistical Computing 149s Platform: x86_64-pc-linux-gnu 149s 149s R is free software and comes with ABSOLUTELY NO WARRANTY. 149s You are welcome to redistribute it under certain conditions. 149s Type 'license()' or 'licence()' for distribution details. 149s 149s R is a collaborative project with many contributors. 149s Type 'contributors()' for more information and 149s 'citation()' on how to cite R or R packages in publications. 149s 149s Type 'demo()' for some demos, 'help()' for on-line help, or 149s 'help.start()' for an HTML browser interface to help. 149s Type 'q()' to quit R. 149s 149s > ## IGNORE_RDIFF_BEGIN 149s > library(stars) 149s Loading required package: abind 149s Loading required package: sf 149s Linking to GEOS 3.14.1, GDAL 3.12.1, PROJ 9.7.0; sf_use_s2() is TRUE 149s > ## IGNORE_RDIFF_END 149s > 149s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 149s + data(air) # this loads several datasets in .GlobalEnv 149s + dim(air) 149s + d = st_dimensions(station = st_set_crs(st_as_sfc(stations), 4326), time = dates) 149s + 149s + blocks = st_make_grid(st_as_sfc("POLYGON ((5.871619 47.26986, 15.03811 47.26986, 15.03811 55.05653, 5.871619 55.05653, 5.871619 47.26986))", crs = 4326), 149s + n = c(3,3)) 149s + 149s + print(aq <- st_as_stars(list(PM10 = air), dimensions = d)) 149s + print(a <- aggregate(aq, blocks, mean, na.rm = TRUE)) 149s + } 150s stars object with 2 dimensions and 1 attribute 150s attribute(s): 150s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 150s PM10 0 9.921 14.792 17.69728 21.992 274.333 157659 150s dimension(s): 150s from to offset delta refsys point 150s station 1 70 NA NA WGS 84 TRUE 150s time 1 4383 1998-01-01 1 days Date FALSE 150s values 150s station POINT (9.585911 53.67057),...,POINT (9.446661 49.24068) 150s time NULL 150s stars object with 2 dimensions and 1 attribute 150s attribute(s): 150s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 150s PM10 1 11 15.57425 18.1715 22.17197 183.271 8429 150s dimension(s): 150s from to offset delta refsys point 150s geometry 1 9 NA NA WGS 84 FALSE 150s time 1 4383 1998-01-01 1 days Date FALSE 150s values 150s geometry POLYGON ((5.871619 47.269...,...,POLYGON ((11.98261 52.460... 150s time NULL 150s > 150s > # adapted from ?read_stars: 150s > m = array(1:720, dim = c(x = 10, y = 12, t = 6)) # named dim 150s > st = st_as_stars(m) 150s > attr(st, "dimensions")$y$delta = -1 150s > attr(st, "dimensions")$y$offset = 12 150s > tm = as.Date("2019-02-19") + 1:6 150s > st = st_set_crs(st_set_dimensions(st, 3, values = tm), 4326) 150s > 150s > tmp = tempfile(fileext = ".tif") 150s > write_stars(st, tmp) 150s > 150s > (red <- setNames(read_stars(tmp, RasterIO = list(nXOff = 1, nYOff = 1, nXsize = 10, nYSize = 12, 150s + nBufXSize = 2, nBufYSize = 2)), "foo")) 150s stars object with 3 dimensions and 1 attribute 150s attribute(s): 150s Min. 1st Qu. Median Mean 3rd Qu. Max. 150s foo 33 199.25 365.5 365.5 531.75 698 150s dimension(s): 150s from to offset delta refsys point x/y 150s x 1 2 0 5 WGS 84 FALSE [x] 150s y 1 2 12 -6 WGS 84 FALSE [y] 150s band 1 6 NA NA NA NA 150s > 150s > sfc = st_set_crs(st_as_sfc(red, as_points = FALSE), st_crs(st)) 150s > (a = aggregate(st, st_sf(a = 1, geom = sfc), mean)) 150s stars object with 2 dimensions and 1 attribute 150s attribute(s): 150s Min. 1st Qu. Median Mean 3rd Qu. Max. 150s A1 28 194.25 360.5 360.5 526.75 693 150s dimension(s): 150s from to offset delta refsys point 150s geom 1 4 NA NA WGS 84 FALSE 150s t 1 6 2019-02-20 1 days Date FALSE 150s values 150s geom POLYGON ((0 12, 5 12, 5 6...,...,POLYGON ((5 6, 10 6, 10 0... 150s t NULL 150s > (a = aggregate(st, sfc, mean)) 150s stars object with 2 dimensions and 1 attribute 150s attribute(s): 150s Min. 1st Qu. Median Mean 3rd Qu. Max. 150s A1 28 194.25 360.5 360.5 526.75 693 150s dimension(s): 150s from to offset delta refsys point 150s geometry 1 4 NA NA WGS 84 FALSE 150s t 1 6 2019-02-20 1 days Date FALSE 150s values 150s geometry POLYGON ((0 12, 5 12, 5 6...,...,POLYGON ((5 6, 10 6, 10 0... 150s t NULL 150s > 150s > tm0 = as.Date("2019-02-19") + -1:8 150s > (a = aggregate(st, tm0, mean, na.rm = TRUE)) 150s stars object with 3 dimensions and 1 attribute 150s attribute(s): 150s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 150s A1 1 180.75 360.5 360.5 540.25 720 480 150s dimension(s): 150s from to offset delta refsys point x/y 150s time 1 10 2019-02-18 1 days Date NA 150s x 1 10 0 1 WGS 84 FALSE [x] 150s y 1 12 12 -1 WGS 84 FALSE [y] 150s > (a = aggregate(st, "days", mean, na.rm = TRUE)) 150s stars object with 3 dimensions and 1 attribute 150s attribute(s): 150s Min. 1st Qu. Median Mean 3rd Qu. Max. 150s A1 1 180.75 360.5 360.5 540.25 720 150s dimension(s): 150s from to offset delta refsys point x/y 150s time 1 6 2019-02-20 1 days Date NA 150s x 1 10 0 1 WGS 84 FALSE [x] 150s y 1 12 12 -1 WGS 84 FALSE [y] 150s > yd = function(x) as.POSIXlt(x)$yday 150s > (a = aggregate(st, yd, mean, na.rm = TRUE)) 150s stars object with 3 dimensions and 1 attribute 150s attribute(s): 150s Min. 1st Qu. Median Mean 3rd Qu. Max. 150s A1 1 180.75 360.5 360.5 540.25 720 150s dimension(s): 150s from to offset delta refsys point values x/y 150s geometry 1 6 NA NA NA NA 50,...,55 150s x 1 10 0 1 WGS 84 FALSE NULL [x] 150s y 1 12 12 -1 WGS 84 FALSE NULL [y] 150s > 150s > # with "by" geometry not overlapping x 150s > pt = st_point(c(-10,-10)) 150s > (sfc = c(sfc, st_sfc(pt, crs = st_crs(sfc)))) 150s Geometry set for 5 features 150s Geometry type: GEOMETRY 150s Dimension: XY 150s Bounding box: xmin: -10 ymin: -10 xmax: 10 ymax: 12 150s Geodetic CRS: WGS 84 150s POLYGON ((0 12, 5 12, 5 6, 0 6, 0 12)) 150s POLYGON ((5 12, 10 12, 10 6, 5 6, 5 12)) 150s POLYGON ((0 6, 5 6, 5 0, 0 0, 0 6)) 150s POLYGON ((5 6, 10 6, 10 0, 5 0, 5 6)) 150s POINT (-10 -10) 150s > (a = aggregate(st, sfc, mean)) 150s stars object with 2 dimensions and 1 attribute 150s attribute(s): 150s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 150s A1 28 194.25 360.5 360.5 526.75 693 6 150s dimension(s): 150s from to offset delta refsys point 150s geometry 1 5 NA NA WGS 84 FALSE 150s t 1 6 2019-02-20 1 days Date FALSE 150s values 150s geometry POLYGON ((0 12, 5 12, 5 6...,...,POINT (-10 -10) 150s t NULL 150s > (a = aggregate(st, st, mean)) 150s stars object with 2 dimensions and 1 attribute 150s attribute(s): 150s Min. 1st Qu. Median Mean 3rd Qu. Max. 150s A1 1 180.75 360.5 360.5 540.25 720 150s dimension(s): 150s from to offset delta refsys point 150s geometry 1 120 NA NA WGS 84 FALSE 150s t 1 6 2019-02-20 1 days Date FALSE 150s values 150s geometry POLYGON ((0 12, 1 12, 1 1...,...,POLYGON ((9 1, 10 1, 10 0... 150s t NULL 150s > 150s BEGIN TEST align.R 150s 150s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 150s Copyright (C) 2025 The R Foundation for Statistical Computing 150s Platform: x86_64-pc-linux-gnu 150s 150s R is free software and comes with ABSOLUTELY NO WARRANTY. 150s You are welcome to redistribute it under certain conditions. 150s Type 'license()' or 'licence()' for distribution details. 150s 150s R is a collaborative project with many contributors. 150s Type 'contributors()' for more information and 150s 'citation()' on how to cite R or R packages in publications. 150s 150s Type 'demo()' for some demos, 'help()' for on-line help, or 150s 'help.start()' for an HTML browser interface to help. 150s Type 'q()' to quit R. 150s 150s > suppressPackageStartupMessages(library(stars)) 151s > set.seed(1331) 151s > st_sample(st_as_sfc(st_bbox(L7_ETMs)), 1) 151s Geometry set for 1 feature 151s Geometry type: POINT 151s Dimension: XY 151s Bounding box: xmin: 291430.8 ymin: 9111430 xmax: 291430.8 ymax: 9111430 151s Projected CRS: SIRGAS 2000 / UTM zone 25S 151s > b = st_buffer(st_sample(st_as_sfc(st_bbox(L7_ETMs)), 1), 335) 151s POINT (291430.8 9111430) 151s > bba = stars:::st_align(st_bbox(b), st_dimensions(L7_ETMs)) 151s > 151s > plot(L7_ETMs[,,,1], extent = st_buffer(b, 20), reset = FALSE, key.pos = NULL) 151s > plot(b, add = TRUE, col = NA, border = 'red') 151s > plot(st_as_sfc(st_bbox(b)), col = NA, border = 'red', add = TRUE) 151s > plot(st_as_sfc(bba), col = NA, border = 'blue', add = TRUE) 151s > st_bbox(b) 151s xmin ymin xmax ymax 151s 297116.8 9119404.1 297786.8 9120074.1 151s > bba 151s xmin ymin xmax ymax 151s 297098.3 9119392.8 297810.8 9120076.8 151s > 151s > plot(L7_ETMs[,,,1], reset = FALSE, key.pos = NULL) 151s > plot(b, col = 'red', add = TRUE) 151s > plot(st_as_sfc(bba), col = NA, border = 'blue', add = TRUE) 151s > 151s > b0 = st_buffer(b, -100) 151s > L7 = st_as_stars(L7_ETMs)[b0][,,,1] |> st_normalize() 151s > bbb = stars:::st_align(st_bbox(b), st_dimensions(L7)) 151s > plot(L7, extent = st_buffer(b, 120), reset = FALSE, key.pos = NULL) 151s > plot(st_as_sfc(st_bbox(L7)), col = NA, border = 'black', add = TRUE) 151s > plot(st_as_sfc(bbb), col = NA, border = 'blue', add = TRUE) 151s > plot(b, col = NA, border = 'red', add = TRUE) 151s > 151s > all.equal(bbb, bba) 151s [1] TRUE 151s > 151s BEGIN TEST area.R 151s 151s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 151s Copyright (C) 2025 The R Foundation for Statistical Computing 151s Platform: x86_64-pc-linux-gnu 151s 151s R is free software and comes with ABSOLUTELY NO WARRANTY. 151s You are welcome to redistribute it under certain conditions. 151s Type 'license()' or 'licence()' for distribution details. 151s 151s R is a collaborative project with many contributors. 151s Type 'contributors()' for more information and 151s 'citation()' on how to cite R or R packages in publications. 151s 151s Type 'demo()' for some demos, 'help()' for on-line help, or 151s 'help.start()' for an HTML browser interface to help. 151s Type 'q()' to quit R. 151s 151s > suppressPackageStartupMessages(library(stars)) 151s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 151s > x = read_stars(tif) 151s > (a = st_area(x[,1:5,1:5])) 151s stars object with 2 dimensions and 1 attribute 151s attribute(s): 151s Min. 1st Qu. Median Mean 3rd Qu. Max. 151s area [m^2] 812.25 812.25 812.25 812.25 812.25 812.25 151s dimension(s): 151s from to offset delta refsys point x/y 151s x 1 5 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 151s y 1 5 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 151s > 151s > m = matrix(1:20, nrow = 5, ncol = 4) 151s > x = c(0, 0.5, 1, 2, 4, 5) # 6 numbers: boundaries! 151s > y = c(0.3, 0.5, 1, 2, 2.2) # 5 numbers: boundaries! 151s > (r = st_as_stars(list(m = m), dimensions = st_dimensions(x = x, y = y))) 151s stars object with 2 dimensions and 1 attribute 151s attribute(s): 151s Min. 1st Qu. Median Mean 3rd Qu. Max. 151s m 1 5.75 10.5 10.5 15.25 20 151s dimension(s): 151s from to point values x/y 151s x 1 5 FALSE [0,0.5),...,[4,5) [x] 151s y 1 4 FALSE [0.3,0.5),...,[2,2.2) [y] 151s > # image(r, axes = TRUE, col = grey((1:20)/20)) 151s > (a = st_area(r)) 151s Missing coordinate reference system: assuming Cartesian coordinates 151s stars object with 2 dimensions and 1 attribute 151s attribute(s): 151s Min. 1st Qu. Median Mean 3rd Qu. Max. 151s area 0.1 0.2 0.325 0.475 0.5 2 151s dimension(s): 151s from to point values x/y 151s x 1 5 FALSE [0,0.5),...,[4,5) [x] 151s y 1 4 FALSE [0.3,0.5),...,[2,2.2) [y] 151s > #plot(a, axes = TRUE) 151s > 151s > s5p = system.file("sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", package = "starsdata") 151s > if (s5p != "") { 151s + nit.c = read_stars(s5p, sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 151s + curvilinear = c("//PRODUCT/longitude", "//PRODUCT/latitude"), driver = NULL) 151s + if (inherits(nit.c[[1]], "units")) 151s + nit.c[[1]] = units::drop_units(nit.c[[1]]) 151s + nit.c[[1]][nit.c[[1]] > 9e+36] = NA 151s + st_crs(nit.c) = 4326 151s + print((a <- st_area(nit.c[,1:5,1:5]))) 151s + # plot(a, axes = TRUE, border = NA) 151s + } 151s > 151s BEGIN TEST crop.R 151s 151s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 151s Copyright (C) 2025 The R Foundation for Statistical Computing 151s Platform: x86_64-pc-linux-gnu 151s 151s R is free software and comes with ABSOLUTELY NO WARRANTY. 151s You are welcome to redistribute it under certain conditions. 151s Type 'license()' or 'licence()' for distribution details. 151s 151s R is a collaborative project with many contributors. 151s Type 'contributors()' for more information and 151s 'citation()' on how to cite R or R packages in publications. 151s 151s Type 'demo()' for some demos, 'help()' for on-line help, or 151s 'help.start()' for an HTML browser interface to help. 151s Type 'q()' to quit R. 151s 152s > suppressPackageStartupMessages(library(stars)) 152s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 152s > x = read_stars(tif) 152s > xy = structure(list(x = c(293253.999046018, 296400.196497684), y = c(9113801.64775462, 152s + 9111328.49619133)), .Names = c("x", "y")) 152s > pts = st_as_sf(data.frame(do.call(cbind, xy)), coords = c("x", "y"), crs = st_crs(x)) 152s > image(x, axes = TRUE) 152s > plot(st_as_sfc(st_bbox(pts)), col = NA, add = TRUE) 152s > 152s > bb = st_bbox(pts) 152s > (xx = x[bb]) 152s stars object with 3 dimensions and 1 attribute 152s attribute(s): 152s Min. 1st Qu. Median Mean 3rd Qu. Max. 152s L7_ETMs.tif 3 56 73 70.87303 89 255 152s dimension(s): 152s from to offset delta refsys point x/y 152s x 158 268 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 152s y 245 331 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 152s band 1 6 NA NA NA NA 152s > image(xx) 152s > plot(st_as_sfc(bb), add = TRUE, col = NA) 152s > st_contains(st_as_sfc(st_bbox(xx)), st_as_sfc(st_bbox(pts))) 152s Sparse geometry binary predicate list of length 1, where the predicate 152s was `contains' 152s 1: 1 152s > 152s > image(x) 152s > pt = st_point(c(x = 290462.103109179, y = 9114202.32594085)) 152s > buf = st_buffer(st_sfc(pt, crs = st_crs(x)), 1500) 152s > plot(buf, add = TRUE) 152s > 152s > buf = st_sfc(st_polygon(list(st_buffer(pt, 1500)[[1]], st_buffer(pt, 1000)[[1]])), 152s + crs = st_crs(x)) 152s > image(x[buf]) 152s > plot(buf, add = TRUE, col = NA) 152s > image(x[buf,crop=FALSE]) 153s > plot(buf, add = TRUE, col = NA) 153s > 153s > plot(x, rgb = 1:3) 153s > 153s > # #638: 153s > l = st_as_stars(L7_ETMs) 153s > st_bbox(l) |> st_as_sfc() -> bb 153s > (bb + 1e6) |> st_set_crs(st_crs(l)) -> b 153s > st_crop(l, b) 153s stars object with 3 dimensions and 1 attribute 153s attribute(s): 153s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 153s L7_ETMs NA NA NA NaN NA NA 737088 153s dimension(s): 153s from to offset delta refsys point x/y 153s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 153s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 153s band 1 6 NA NA NA NA 153s > st_intersects(b, st_as_sfc(st_bbox(l))) |> as.matrix() 153s Warning message: 153s In st_crop.stars(l, b) : st_crop: bounding boxes of x and y do not overlap 153s [,1] 153s [1,] FALSE 153s > (bb - 1e6) |> st_set_crs(st_crs(l)) -> b 153s > st_crop(l, b) 153s stars object with 3 dimensions and 1 attribute 153s attribute(s): 153s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 153s L7_ETMs NA NA NA NaN NA NA 737088 153s dimension(s): 153s from to offset delta refsys point x/y 153s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 153s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 153s band 1 6 NA NA NA NA 153s > 153s Warning message: 153s In st_crop.stars(l, b) : st_crop: bounding boxes of x and y do not overlap 153s BEGIN TEST curvilinear.R 153s 153s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 153s Copyright (C) 2025 The R Foundation for Statistical Computing 153s Platform: x86_64-pc-linux-gnu 153s 153s R is free software and comes with ABSOLUTELY NO WARRANTY. 153s You are welcome to redistribute it under certain conditions. 153s Type 'license()' or 'licence()' for distribution details. 153s 153s R is a collaborative project with many contributors. 153s Type 'contributors()' for more information and 153s 'citation()' on how to cite R or R packages in publications. 153s 153s Type 'demo()' for some demos, 'help()' for on-line help, or 153s 'help.start()' for an HTML browser interface to help. 153s Type 'q()' to quit R. 153s 154s > suppressPackageStartupMessages(library(stars)) 154s > 154s > s5p = system.file("sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", package = "starsdata") 154s > if (s5p != "") { 154s + 154s + lat_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/latitude") 154s + lon_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/longitude") 154s + nit_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column") 154s + lat = read_stars(lat_ds) 154s + lon = read_stars(lon_ds) 154s + nit = read_stars(nit_ds) 154s + nit[[1]][nit[[1]] > 9e+36] = NA 154s + 154s + ll = setNames(c(lon, lat), c("x", "y")) 154s + nit.c0 = st_as_stars(nit, curvilinear = ll) 154s + 154s + # more direct method: 154s + nit.c = read_stars(s5p, sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 154s + curvilinear = c("//PRODUCT/longitude", "//PRODUCT/latitude"), driver = NULL) 154s + if (inherits(nit.c[[1]], "units")) 154s + nit.c[[1]] = units::drop_units(nit.c[[1]]) 154s + nit.c[[1]][nit.c[[1]] > 9e+36] = NA 154s + all.equal(nit.c0, nit.c) 154s + st_crs(nit.c) = 4326 154s + print(nit.c) 154s + 154s + if (FALSE && capabilities()["png"]) { 154s + png("nit1.png", 800, 800) 154s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = TRUE, pch = 16) 154s + maps::map('world', add = TRUE, col = 'red') 154s + dev.off() 154s + 154s + png("nit2.png", 800, 800) 154s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = FALSE, border = NA) 154s + maps::map('world', add = TRUE, col = 'red') 154s + dev.off() 154s + 154s + nit.c = stars:::st_downsample(nit.c, 8) 154s + print(nit.c) 154s + 154s + png("nit3.png", 800, 800) 154s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = TRUE, pch = 16) 154s + maps::map('world', add = TRUE, col = 'red') 154s + dev.off() 154s + 154s + png("nit4.png", 800, 800) 154s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = FALSE, border = NA) 154s + maps::map('world', add = TRUE, col = 'red') 154s + dev.off() 154s + } 154s + 154s + } 154s > 154s BEGIN TEST datasets.R 154s 154s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 154s Copyright (C) 2025 The R Foundation for Statistical Computing 154s Platform: x86_64-pc-linux-gnu 154s 154s R is free software and comes with ABSOLUTELY NO WARRANTY. 154s You are welcome to redistribute it under certain conditions. 154s Type 'license()' or 'licence()' for distribution details. 154s 154s R is a collaborative project with many contributors. 154s Type 'contributors()' for more information and 154s 'citation()' on how to cite R or R packages in publications. 154s 154s Type 'demo()' for some demos, 'help()' for on-line help, or 154s 'help.start()' for an HTML browser interface to help. 154s Type 'q()' to quit R. 154s 154s > suppressPackageStartupMessages(library(stars)) 154s > bcsd_obs 154s stars_proxy object with 2 attributes in 2 file(s): 154s $foo 154s [1] "[...]/bcsd_obs_1999.nc:pr" 154s 154s $bar 154s [1] "[...]/bcsd_obs_1999.nc:tas" 154s 154s dimension(s): 154s from to offset delta refsys values x/y 154s x 1 81 -85 0.125 NA NULL [x] 154s y 1 33 37.12 -0.125 NA NULL [y] 154s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 154s > L7_ETMs 154s stars_proxy object with 1 attribute in 1 file(s): 154s $L7_ETMs 154s [1] "[...]/L7_ETMs.tif" 154s 154s dimension(s): 154s from to offset delta refsys point x/y 154s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 154s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 154s band 1 6 NA NA NA NA 154s > if (require(starsdata, quietly = TRUE)) { 154s + print(stars_sentinel2) 154s + } 154s > 155s BEGIN TEST dimensions.R 155s 155s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 155s Copyright (C) 2025 The R Foundation for Statistical Computing 155s Platform: x86_64-pc-linux-gnu 155s 155s R is free software and comes with ABSOLUTELY NO WARRANTY. 155s You are welcome to redistribute it under certain conditions. 155s Type 'license()' or 'licence()' for distribution details. 155s 155s R is a collaborative project with many contributors. 155s Type 'contributors()' for more information and 155s 'citation()' on how to cite R or R packages in publications. 155s 155s Type 'demo()' for some demos, 'help()' for on-line help, or 155s 'help.start()' for an HTML browser interface to help. 155s Type 'q()' to quit R. 155s 155s > # https://github.com/r-spatial/stars/issues/295 155s > suppressPackageStartupMessages(library(stars)) 155s > raw <- read_stars(system.file("nc/bcsd_obs_1999.nc", package = "stars")) 155s pr, tas, 155s > foo <- function(x, idx) stats::lowess(idx, x)$y 155s > 155s > timeline <- st_get_dimension_values(raw, "time") 155s > smooth = st_apply(raw, 155s + MARGIN = c("x", "y"), 155s + FUN = foo, 155s + idx = st_get_dimension_values(raw, "time") 155s + ) 155s > 155s > st_set_dimensions(smooth, 155s + which = "foo", 155s + values = st_get_dimension_values(raw, "time"), 155s + names = "time" 155s + ) 155s stars object with 3 dimensions and 2 attributes 155s attribute(s): 155s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 155s pr 16.133519 70.371665 84.55774 87.72969 101.94830 278.6427 7116 155s tas -2.354958 9.632157 15.32671 14.61650 19.99331 24.7976 7116 155s dimension(s): 155s from to offset delta refsys values x/y 155s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 155s x 1 81 -85 0.125 NA NULL [x] 155s y 1 33 37.12 -0.125 NA NULL [y] 155s > 155s > raw %>% 155s + st_apply(MARGIN = c("x", "y"), FUN = foo, idx = timeline) %>% 155s + st_set_dimensions("foo", st_dimensions(raw)["time"]) 155s stars object with 3 dimensions and 2 attributes 155s attribute(s): 155s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 155s pr 16.133519 70.371665 84.55774 87.72969 101.94830 278.6427 7116 155s tas -2.354958 9.632157 15.32671 14.61650 19.99331 24.7976 7116 155s dimension(s): 155s from to offset delta refsys values x/y 155s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 155s x 1 81 -85 0.125 NA NULL [x] 155s y 1 33 37.12 -0.125 NA NULL [y] 155s > 155s BEGIN TEST downsample.R 156s 156s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 156s Copyright (C) 2025 The R Foundation for Statistical Computing 156s Platform: x86_64-pc-linux-gnu 156s 156s R is free software and comes with ABSOLUTELY NO WARRANTY. 156s You are welcome to redistribute it under certain conditions. 156s Type 'license()' or 'licence()' for distribution details. 156s 156s R is a collaborative project with many contributors. 156s Type 'contributors()' for more information and 156s 'citation()' on how to cite R or R packages in publications. 156s 156s Type 'demo()' for some demos, 'help()' for on-line help, or 156s 'help.start()' for an HTML browser interface to help. 156s Type 'q()' to quit R. 156s 156s > suppressPackageStartupMessages(library(stars)) 156s > m = matrix(1:121, 11, 11) 156s > m 156s [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] 156s [1,] 1 12 23 34 45 56 67 78 89 100 111 156s [2,] 2 13 24 35 46 57 68 79 90 101 112 156s [3,] 3 14 25 36 47 58 69 80 91 102 113 156s [4,] 4 15 26 37 48 59 70 81 92 103 114 156s [5,] 5 16 27 38 49 60 71 82 93 104 115 156s [6,] 6 17 28 39 50 61 72 83 94 105 116 156s [7,] 7 18 29 40 51 62 73 84 95 106 117 156s [8,] 8 19 30 41 52 63 74 85 96 107 118 156s [9,] 9 20 31 42 53 64 75 86 97 108 119 156s [10,] 10 21 32 43 54 65 76 87 98 109 120 156s [11,] 11 22 33 44 55 66 77 88 99 110 121 156s > s = st_as_stars(m) 156s > st_downsample(s, 1) 156s stars object with 2 dimensions and 1 attribute 156s attribute(s): 156s Min. 1st Qu. Median Mean 3rd Qu. Max. 156s A1 1 28.5 61 61 93.5 121 156s dimension(s): 156s from to offset delta point x/y 156s X1 1 6 0 2 FALSE [x] 156s X2 1 6 0 2 FALSE [y] 156s > st_downsample(s, 1)[[1]] 156s [,1] [,2] [,3] [,4] [,5] [,6] 156s [1,] 1 23 45 67 89 111 156s [2,] 3 25 47 69 91 113 156s [3,] 5 27 49 71 93 115 156s [4,] 7 29 51 73 95 117 156s [5,] 9 31 53 75 97 119 156s [6,] 11 33 55 77 99 121 156s > st_downsample(s, 1, offset = 1) 156s stars object with 2 dimensions and 1 attribute 156s attribute(s): 156s Min. 1st Qu. Median Mean 3rd Qu. Max. 156s A1 13 37 61 61 85 109 156s dimension(s): 156s from to offset delta point x/y 156s X1 1 5 1 2 FALSE [x] 156s X2 1 5 1 2 FALSE [y] 156s > st_downsample(s, 1, offset = 1)[[1]] 156s [,1] [,2] [,3] [,4] [,5] 156s [1,] 13 35 57 79 101 156s [2,] 15 37 59 81 103 156s [3,] 17 39 61 83 105 156s [4,] 19 41 63 85 107 156s [5,] 21 43 65 87 109 156s > st_downsample(s, 1, FUN = mean) 156s stars object with 2 dimensions and 1 attribute 156s attribute(s): 156s Min. 1st Qu. Median Mean 3rd Qu. Max. 156s A1 7 31 55 55 79 103 156s dimension(s): 156s from to offset delta point x/y 156s X1 1 5 0 2 FALSE [x] 156s X2 1 5 0 2 FALSE [y] 156s > st_downsample(s, 1, FUN = mean)[[1]] 156s [,1] [,2] [,3] [,4] [,5] 156s [1,] 7 29 51 73 95 156s [2,] 9 31 53 75 97 156s [3,] 11 33 55 77 99 156s [4,] 13 35 57 79 101 156s [5,] 15 37 59 81 103 156s > st_downsample(s, 1, offset = 1, FUN = mean) 156s stars object with 2 dimensions and 1 attribute 156s attribute(s): 156s Min. 1st Qu. Median Mean 3rd Qu. Max. 156s A1 19 43 67 67 91 115 156s dimension(s): 156s from to offset delta point x/y 156s X1 1 5 1 2 FALSE [x] 156s X2 1 5 1 2 FALSE [y] 156s > st_downsample(s, 1, offset = c(0,1), FUN = mean)[[1]] 156s [,1] [,2] [,3] [,4] [,5] 156s [1,] 18 40 62 84 106 156s [2,] 20 42 64 86 108 156s [3,] 22 44 66 88 110 156s [4,] 24 46 68 90 112 156s [5,] 26 48 70 92 114 156s > st_downsample(s, 1, offset = c(0,1)) 156s stars object with 2 dimensions and 1 attribute 156s attribute(s): 156s Min. 1st Qu. Median Mean 3rd Qu. Max. 156s A1 12 36.5 61 61 85.5 110 156s dimension(s): 156s from to offset delta point x/y 156s X1 1 6 0 2 FALSE [x] 156s X2 1 5 1 2 FALSE [y] 156s > st_downsample(s, 1, offset = c(0,1))[[1]] 156s [,1] [,2] [,3] [,4] [,5] 156s [1,] 12 34 56 78 100 156s [2,] 14 36 58 80 102 156s [3,] 16 38 60 82 104 156s [4,] 18 40 62 84 106 156s [5,] 20 42 64 86 108 156s [6,] 22 44 66 88 110 156s > 156s BEGIN TEST ee.R 156s 156s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 156s Copyright (C) 2025 The R Foundation for Statistical Computing 156s Platform: x86_64-pc-linux-gnu 156s 156s R is free software and comes with ABSOLUTELY NO WARRANTY. 156s You are welcome to redistribute it under certain conditions. 156s Type 'license()' or 'licence()' for distribution details. 156s 156s R is a collaborative project with many contributors. 156s Type 'contributors()' for more information and 156s 'citation()' on how to cite R or R packages in publications. 156s 156s Type 'demo()' for some demos, 'help()' for on-line help, or 156s 'help.start()' for an HTML browser interface to help. 156s Type 'q()' to quit R. 156s 156s > # show that extract with exact=TRUE equals st_interpolate_aw(), only much faster 156s > options(digits=15) 156s > suppressPackageStartupMessages(library(stars)) 157s > L = st_as_stars(L7_ETMs)[,,,1] 157s > set.seed(123432) 157s > st_bbox(L) |> 157s + st_as_sfc() |> 157s + st_centroid() |> 157s + st_buffer(50) |> 157s + st_sample(10) |> 157s + st_combine() |> 157s + st_convex_hull() -> ch 157s > if (interactive()) { 157s + plot(L, reset = FALSE) 157s + plot(ch, add = TRUE, border = 'red', col = NA) 157s + } 157s > if (FALSE) { 157s + e = st_extract(L, ch)[[1]] 157s + a = aggregate(L, ch, mean)[[1]] 157s + identical(e, a) # same code path 157s + ee = aggregate(L, ch, mean, exact = TRUE)[[1]] 157s + all.equal(e, ee) 157s + aw = suppressWarnings(st_interpolate_aw(L, ch, extensive = FALSE)$V1) 157s + all.equal(as.vector(ee), aw) 157s + ee0 = st_extract(L, ch, exact = TRUE)[[1]] 157s + all.equal(ee0, ee) # ?? 157s + } 157s > 157s BEGIN TEST extract.R 157s 157s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 157s Copyright (C) 2025 The R Foundation for Statistical Computing 157s Platform: x86_64-pc-linux-gnu 157s 157s R is free software and comes with ABSOLUTELY NO WARRANTY. 157s You are welcome to redistribute it under certain conditions. 157s Type 'license()' or 'licence()' for distribution details. 157s 157s R is a collaborative project with many contributors. 157s Type 'contributors()' for more information and 157s 'citation()' on how to cite R or R packages in publications. 157s 157s Type 'demo()' for some demos, 'help()' for on-line help, or 157s 'help.start()' for an HTML browser interface to help. 157s Type 'q()' to quit R. 157s 157s > # Create 'stars' object 157s > set.seed(1331) 157s > suppressPackageStartupMessages(library(stars)) 157s > volcano = rbind(volcano, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA) # add NA rows 157s > d = st_dimensions(x = 1:ncol(volcano), y = 1:nrow(volcano)) 157s > (r = st_as_stars(t(volcano))) 157s stars object with 2 dimensions and 1 attribute 157s attribute(s): 157s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 157s A1 94 108 124 130.1879 150 195 732 157s dimension(s): 157s from to offset delta point x/y 157s X1 1 61 0 1 FALSE [x] 157s X2 1 99 0 1 FALSE [y] 157s > r = st_set_dimensions(r, 1, offset = 0, delta = 1) 157s > r = st_set_dimensions(r, 2, offset = nrow(volcano), delta = -1) 157s > 157s > # Create points 157s > pnt = st_sample(st_as_sfc(st_bbox(r)), 100) 157s > pnt = st_as_sf(pnt) 157s > 157s > # Extract - 'st_join' 157s > x = st_join(pnt, st_as_sf(r)) 157s > 157s > # Extract - 'st_extract' 157s > y = st_extract(r, pnt) 157s > 157s > # check there are NA's: 157s > any(is.na(x)) 157s [1] TRUE 157s > # Compare 157s > all.equal(x$A1, y[[1]]) 157s [1] TRUE 157s > 157s > ################################################ 157s > if (FALSE) { 157s + 157s + ## tic: segfaults 157s + # check equal results with stars_proxy: 157s + #x = st_extract(stars:::st_as_stars_proxy(r), pnt) 157s + #all.equal(x$A1, y[[1]]) 157s + #all.equal(x, y) 157s + 157s + r = c(r, 2*r, 10*r) 157s + x = st_join(pnt, st_as_sf(r)) 157s + y = st_as_sf(st_extract(r, pnt)) 157s + all.equal(x, y) 157s + 157s + ## tic: segfaults 157s + #x = st_extract(stars:::st_as_stars_proxy(merge(r)), pnt) 157s + #all.equal(st_as_sf(x), y) 157s + 157s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 157s + xp = read_stars(tif, proxy = TRUE) 157s + xm = read_stars(tif, proxy = FALSE) 157s + pts = st_sample(st_as_sfc(st_bbox(xp)), 10) 157s + pts = c(pts, st_as_sfc("POINT(0 0)"), pts) 157s + em = st_extract(xm, pts) 157s + if (utils::packageVersion("sf") >= "0.9-7") { 157s + ep = st_extract(xp, pts) 157s + print(all.equal(ep, em, check.attributes = TRUE)) 157s + } 157s + 157s + # two-attribute objects: 157s + library(stars) 157s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 157s + xp = read_stars(c(tif, tif), proxy = TRUE) 157s + xm = read_stars(c(tif, tif), proxy = FALSE) 157s + pts = st_sample(st_as_sfc(st_bbox(xp)), 10) 157s + pts = c(pts, st_as_sfc("POINT(0 0)"), pts) 157s + em = st_extract(xm, pts) 157s + if (utils::packageVersion("sf") >= "0.9-7") { 157s + ep = st_extract(xp, pts) 157s + print(all.equal(ep, em, check.attributes = TRUE)) 157s + } 157s + 157s + # single-attribute, single raster objects: 157s + tif1 = paste0(tempfile(), ".tif") 157s + write_stars(xm[1,,,1], "x.tif") 157s + xp = read_stars("x.tif", proxy = TRUE) 157s + xm = read_stars("x.tif", proxy = FALSE) 157s + em = st_extract(xm, pts) 157s + if (utils::packageVersion("sf") >= "0.9-7") { 157s + ep = st_extract(xp, pts) 157s + print(all.equal(ep, em, check.attributes = TRUE)) 157s + } 157s + 157s + # multiple-file attributes: 157s + x = c( 157s + "avhrr-only-v2.19810901.nc", 157s + "avhrr-only-v2.19810902.nc", 157s + "avhrr-only-v2.19810903.nc", 157s + "avhrr-only-v2.19810904.nc", 157s + "avhrr-only-v2.19810905.nc", 157s + "avhrr-only-v2.19810906.nc", 157s + "avhrr-only-v2.19810907.nc", 157s + "avhrr-only-v2.19810908.nc", 157s + "avhrr-only-v2.19810909.nc" 157s + ) 157s + file_list = system.file(paste0("netcdf/", x), package = "starsdata") 157s + if (!identical(file_list, "")) { 157s + y = read_stars(file_list, quiet = TRUE) 157s + print(y) 157s + st_crs(y) = "OGC:CRS84" 157s + pts = st_sample(st_as_sfc(st_bbox(y)), 10) 157s + em = st_extract(y, pts) 157s + 157s + (y = read_stars(file_list, quiet = TRUE, proxy = TRUE)) 157s + print(y) 157s + st_crs(y) = "OGC:CRS84" 157s + if (utils::packageVersion("sf") >= "0.9-7") { 157s + ep = st_extract(y, pts) 157s + print(all.equal(em, ep)) 157s + } 157s + } 157s + 157s + # nearest & bilinear comparison: 157s + if (utils::packageVersion("sf") >= "0.9-7") { 157s + set.seed(12331) 157s + s = st_as_stars(matrix(rnorm(16), 4)) 157s + pts = st_sample(st_as_sfc(st_bbox(s)), 10000, type = "regular") 157s + s1 = st_extract(s, pts, bilinear = FALSE) 157s + s2 = st_extract(s, pts, bilinear = TRUE) 157s + s1$s2 = s2[[1]] 157s + names(s1)[c(1,3)] = c("nearest", "bilinear") 157s + print(s1[sample(10000, 5),]) 157s + } 157s + } 157s > 157s BEGIN TEST gridtypes.R 157s 157s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 157s Copyright (C) 2025 The R Foundation for Statistical Computing 157s Platform: x86_64-pc-linux-gnu 157s 157s R is free software and comes with ABSOLUTELY NO WARRANTY. 157s You are welcome to redistribute it under certain conditions. 157s Type 'license()' or 'licence()' for distribution details. 157s 157s R is a collaborative project with many contributors. 157s Type 'contributors()' for more information and 157s 'citation()' on how to cite R or R packages in publications. 157s 157s Type 'demo()' for some demos, 'help()' for on-line help, or 157s 'help.start()' for an HTML browser interface to help. 157s Type 'q()' to quit R. 157s 157s > suppressPackageStartupMessages(library(stars)) 158s > 158s > # regular, but not spatial: 158s > d = st_dimensions(a = 1:3, b = 1:3, band = c("foo", "bar")) 158s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 158s stars object with 3 dimensions and 1 attribute 158s attribute(s): 158s Min. 1st Qu. Median Mean 3rd Qu. Max. 158s X 1 5.25 9.5 9.5 13.75 18 158s dimension(s): 158s from to offset delta point values 158s a 1 3 1 1 FALSE NULL 158s b 1 3 1 1 FALSE NULL 158s band 1 2 NA NA FALSE foo, bar 158s > as.data.frame(st, add_max=FALSE)[1:4,] 158s a b band X 158s 1 1 1 foo 1 158s 2 2 1 foo 2 158s 3 3 1 foo 3 158s 4 1 2 foo 4 158s > try(x <- st_bbox(st)) # error 158s > 158s > # regular, geotransform: 158s > d = st_dimensions(x = 1:3, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 158s Error in st_bbox.dimensions(st_dimensions(obj), ...) : 158s dimensions table does not have x & y, nor an sfc dimension 158s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 158s stars object with 3 dimensions and 1 attribute 158s attribute(s): 158s Min. 1st Qu. Median Mean 3rd Qu. Max. 158s X 1 5.25 9.5 9.5 13.75 18 158s dimension(s): 158s from to offset delta point values x/y 158s x 1 3 1 1 FALSE NULL [x] 158s y 1 3 1 1 FALSE NULL [y] 158s band 1 2 NA NA FALSE foo, bar 158s > as.data.frame(st, add_max=FALSE)[1:4,] 158s x y band X 158s 1 1.5 1.5 foo 1 158s 2 2.5 1.5 foo 2 158s 3 3.5 1.5 foo 3 158s 4 1.5 2.5 foo 4 158s > as.data.frame(st, add_max=TRUE)[1:4,] 158s x y band x_max y_max X 158s 1 1 1 foo 2 2 1 158s 2 2 1 foo 3 2 2 158s 3 3 1 foo 4 2 3 158s 4 1 2 foo 2 3 4 158s > st_bbox(st) 158s xmin ymin xmax ymax 158s 1 1 4 4 158s > 158s > # rectilinear with offset given: 158s > xd = c(1, 2, 4) 158s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 158s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 158s stars object with 3 dimensions and 1 attribute 158s attribute(s): 158s Min. 1st Qu. Median Mean 3rd Qu. Max. 158s X 1 5.25 9.5 9.5 13.75 18 158s dimension(s): 158s from to offset delta point values x/y 158s x 1 3 NA NA FALSE [1,2), [2,4), [4,6) [x] 158s y 1 3 1 1 FALSE NULL [y] 158s band 1 2 NA NA FALSE foo, bar 158s > as.data.frame(st, add_max=FALSE)[1:4,] 158s x y band X 158s 1 1.5 1.5 foo 1 158s 2 3.0 1.5 foo 2 158s 3 5.0 1.5 foo 3 158s 4 1.5 2.5 foo 4 158s > as.data.frame(st, add_max=TRUE)[1:4,] 158s x y band x_max y_max X 158s 1 1 1 foo 2 2 1 158s 2 2 1 foo 4 2 2 158s 3 4 1 foo 6 2 3 158s 4 1 2 foo 2 3 4 158s > st_bbox(st) 158s xmin ymin xmax ymax 158s 1 1 6 4 158s > 158s > # rectilinear with midpoints given: 158s > xd = c(1, 2, 4) 158s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), cell_midpoints = TRUE) 158s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 158s stars object with 3 dimensions and 1 attribute 158s attribute(s): 158s Min. 1st Qu. Median Mean 3rd Qu. Max. 158s X 1 5.25 9.5 9.5 13.75 18 158s dimension(s): 158s from to offset delta point values x/y 158s x 1 3 NA NA FALSE [0.5,1.5), [1.5,3.0), [3.0,5.0) [x] 158s y 1 3 0.5 1 FALSE NULL [y] 158s band 1 2 NA NA FALSE foo, bar 158s > as.data.frame(st, add_max=FALSE)[1:4,] 158s x y band X 158s 1 1.00 1 foo 1 158s 2 2.25 1 foo 2 158s 3 4.00 1 foo 3 158s 4 1.00 2 foo 4 158s > as.data.frame(st, add_max=TRUE)[1:4,] 158s x y band x_max y_max X 158s 1 0.5 0.5 foo 1.5 1.5 1 158s 2 1.5 0.5 foo 3.0 1.5 2 158s 3 3.0 0.5 foo 5.0 1.5 3 158s 4 0.5 1.5 foo 1.5 2.5 4 158s > st_bbox(st) 158s xmin ymin xmax ymax 158s 0.5 0.5 5.0 3.5 158s > 158s > # rectilinear with midpoints given, point support 158s > xd = c(1, 2, 4) 158s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), cell_midpoints = TRUE, point = TRUE) 158s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 158s stars object with 3 dimensions and 1 attribute 158s attribute(s): 158s Min. 1st Qu. Median Mean 3rd Qu. Max. 158s X 1 5.25 9.5 9.5 13.75 18 158s dimension(s): 158s from to offset delta point values x/y 158s x 1 3 NA NA TRUE 1, 2, 4 [x] 158s y 1 3 0.5 1 TRUE NULL [y] 158s band 1 2 NA NA TRUE foo, bar 158s > as.data.frame(st, add_max=FALSE)[1:4,] 158s x y band X 158s 1 1 1 foo 1 158s 2 2 1 foo 2 158s 3 4 1 foo 3 158s 4 1 2 foo 4 158s > as.data.frame(st, add_max=TRUE)[1:4,] 158s x y band x_max y_max X 158s 1 1 0.5 foo 1 1.5 1 158s 2 2 0.5 foo 2 1.5 2 158s 3 4 0.5 foo 4 1.5 3 158s 4 1 1.5 foo 1 2.5 4 158s > st_bbox(st) 158s xmin ymin xmax ymax 158s 1.0 0.5 4.0 3.5 158s > 158s > # rectilinear with start/end given: 158s > #xd = stars:::make_intervals(start = c(1,2,4), end = c(2, 4, 8)) 158s > xd = c(1, 2, 4, 8) # one more than dim of the data array 158s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 158s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 158s stars object with 3 dimensions and 1 attribute 158s attribute(s): 158s Min. 1st Qu. Median Mean 3rd Qu. Max. 158s X 1 5.25 9.5 9.5 13.75 18 158s dimension(s): 158s from to offset delta point values x/y 158s x 1 3 NA NA FALSE [1,2), [2,4), [4,8) [x] 158s y 1 3 1 1 FALSE NULL [y] 158s band 1 2 NA NA FALSE foo, bar 158s > as.data.frame(st, add_max=FALSE)[1:4,] 158s x y band X 158s 1 1.5 1.5 foo 1 158s 2 3.0 1.5 foo 2 158s 3 6.0 1.5 foo 3 158s 4 1.5 2.5 foo 4 158s > as.data.frame(st, add_max=TRUE)[1:4,] 158s x y band x_max y_max X 158s 1 1 1 foo 2 2 1 158s 2 2 1 foo 4 2 2 158s 3 4 1 foo 8 2 3 158s 4 1 2 foo 2 3 4 158s > st_bbox(st) 158s xmin ymin xmax ymax 158s 1 1 8 4 158s > 158s > # with sfc: 158s > sfc = st_sfc(st_point(0:1), st_point(2:1), st_point(4:3)) 158s > d = st_dimensions(x = sfc, y = 1:3, band = c("foo", "bar")) 158s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 158s stars object with 3 dimensions and 1 attribute 158s attribute(s): 158s Min. 1st Qu. Median Mean 3rd Qu. Max. 158s X 1 5.25 9.5 9.5 13.75 18 158s dimension(s): 158s from to offset delta point values 158s x 1 3 NA NA TRUE POINT (0 1),...,POINT (4 3) 158s y 1 3 1 1 FALSE NULL 158s band 1 2 NA NA FALSE foo, bar 158s > as.data.frame(st, add_max=FALSE)[1:4,] 158s x y band X 158s 1 POINT (0 1) 1 foo 1 158s 2 POINT (2 1) 1 foo 2 158s 3 POINT (4 3) 1 foo 3 158s 4 POINT (0 1) 2 foo 4 158s > st_as_sf(st, long = TRUE)[1:4,] 158s Simple feature collection with 4 features and 3 fields 158s Geometry type: POINT 158s Dimension: XY 158s Bounding box: xmin: 0 ymin: 1 xmax: 4 ymax: 3 158s CRS: NA 158s y band X x 158s 1 1 foo 1 POINT (0 1) 158s 2 1 foo 2 POINT (2 1) 158s 3 1 foo 3 POINT (4 3) 158s 4 2 foo 4 POINT (0 1) 158s > st_bbox(st) 158s xmin ymin xmax ymax 158s 0 1 4 3 158s > 158s > # rotated/sheared: 158s > d = st_dimensions(x = 1:3, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), affine = c(0.2, -0.2)) 158s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 158s stars object with 3 dimensions and 1 attribute 158s attribute(s): 158s Min. 1st Qu. Median Mean 3rd Qu. Max. 158s X 1 5.25 9.5 9.5 13.75 18 158s dimension(s): 158s from to offset delta point values x/y 158s x 1 3 1 1 FALSE NULL [x] 158s y 1 3 1 1 FALSE NULL [y] 158s band 1 2 NA NA FALSE foo, bar 158s sheared raster with parameters: 0.2 -0.2 158s > as.data.frame(st, add_max=FALSE)[1:4,] 158s x y X 158s 1 1.6 1.4 1 158s 2 2.6 1.2 2 158s 3 3.6 1.0 3 158s 4 1.8 2.4 4 158s > try(as.data.frame(st, add_max=TRUE)[1:4,]) # errors 158s > st_bbox(st) 158s xmin ymin xmax ymax 158s 1.0 0.4 4.6 4.0 158s > 158s > # curvilinear: 158s > set.seed(13531) 158s > lon = st_as_stars(matrix(signif(runif(9), 2), 3, 3)) 158s > lat = st_as_stars(matrix(signif(runif(9), 2), 3, 3)) 158s > ll = setNames(c(lon, lat), c("lon", "lat")) 158s Error in st_coordinates.stars(x, add_max = add_max, center = center, ...) : 158s add_max will not work for rotated/shared rasters 158s > d = st_dimensions(lon = 1:3, lat = 1:3) 158s > a = st_as_stars(list(X = array(1:9, c(3,3))), dimensions = d) 158s > (st = st_as_stars(a, curvilinear = ll)) 158s stars object with 2 dimensions and 1 attribute 158s attribute(s): 158s Min. 1st Qu. Median Mean 3rd Qu. Max. 158s X 1 3 5 5 7 9 158s dimension(s): 158s from to refsys point values x/y 158s lon 1 3 WGS 84 (CRS84) FALSE [3x3] 0.03,...,0.89 [x] 158s lat 1 3 WGS 84 (CRS84) FALSE [3x3] 0.021,...,0.89 [y] 158s curvilinear grid 158s > as.data.frame(st) 158s lon lat X 158s 1 0.89 0.250 1 158s 2 0.64 0.510 2 158s 3 0.30 0.670 3 158s 4 0.69 0.890 4 158s 5 0.47 0.890 5 158s 6 0.26 0.190 6 158s 7 0.57 0.021 7 158s 8 0.27 0.220 8 158s 9 0.03 0.340 9 158s > st_bbox(st) 158s xmin ymin xmax ymax 158s 0.030 0.021 0.890 0.890 158s > 158s > # time regular: 158s > t = as.Date("2019-01-20") + 0:3 158s > d = st_dimensions(t, sfc) 158s > (st = st_as_stars(list(a = matrix(1:12, 4, 3)), dimensions = d)) 158s stars object with 2 dimensions and 1 attribute 158s attribute(s): 158s Min. 1st Qu. Median Mean 3rd Qu. Max. 158s a 1 3.75 6.5 6.5 9.25 12 158s dimension(s): 158s from to offset delta refsys point values 158s X1 1 4 2019-01-20 1 days Date FALSE NULL 158s X2 1 3 NA NA NA TRUE POINT (0 1),...,POINT (4 3) 158s > as.data.frame(st) 158s X1 X2 a 158s 1 2019-01-20 POINT (0 1) 1 158s 2 2019-01-21 POINT (0 1) 2 158s 3 2019-01-22 POINT (0 1) 3 158s 4 2019-01-23 POINT (0 1) 4 158s 5 2019-01-20 POINT (2 1) 5 158s 6 2019-01-21 POINT (2 1) 6 158s 7 2019-01-22 POINT (2 1) 7 158s 8 2019-01-23 POINT (2 1) 8 158s 9 2019-01-20 POINT (4 3) 9 158s 10 2019-01-21 POINT (4 3) 10 158s 11 2019-01-22 POINT (4 3) 11 158s 12 2019-01-23 POINT (4 3) 12 158s > 158s > # time, rectilinear 158s > t = as.Date("2019-01-20") + c(0, 2, 3, 10) 158s > d = st_dimensions(t, sfc) 158s > (st = st_as_stars(list(a = matrix(1:12, 4, 3)), dimensions = d)) 158s stars object with 2 dimensions and 1 attribute 158s attribute(s): 158s Min. 1st Qu. Median Mean 3rd Qu. Max. 158s a 1 3.75 6.5 6.5 9.25 12 158s dimension(s): 158s from to refsys point values 158s X1 1 4 Date FALSE 2019-01-20,...,2019-01-30 158s X2 1 3 NA TRUE POINT (0 1),...,POINT (4 3) 158s > as.data.frame(st) 158s X1 X2 a 158s 1 2019-01-20 POINT (0 1) 1 158s 2 2019-01-22 POINT (0 1) 2 158s 3 2019-01-23 POINT (0 1) 3 158s 4 2019-01-30 POINT (0 1) 4 158s 5 2019-01-20 POINT (2 1) 5 158s 6 2019-01-22 POINT (2 1) 6 158s 7 2019-01-23 POINT (2 1) 7 158s 8 2019-01-30 POINT (2 1) 8 158s 9 2019-01-20 POINT (4 3) 9 158s 10 2019-01-22 POINT (4 3) 10 158s 11 2019-01-23 POINT (4 3) 11 158s 12 2019-01-30 POINT (4 3) 12 158s > 158s BEGIN TEST mdim.R 158s 158s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 158s Copyright (C) 2025 The R Foundation for Statistical Computing 158s Platform: x86_64-pc-linux-gnu 158s 158s R is free software and comes with ABSOLUTELY NO WARRANTY. 158s You are welcome to redistribute it under certain conditions. 158s Type 'license()' or 'licence()' for distribution details. 158s 158s R is a collaborative project with many contributors. 158s Type 'contributors()' for more information and 158s 'citation()' on how to cite R or R packages in publications. 158s 158s Type 'demo()' for some demos, 'help()' for on-line help, or 158s 'help.start()' for an HTML browser interface to help. 158s Type 'q()' to quit R. 158s 158s > Sys.setenv(TZ="") 158s > suppressPackageStartupMessages(library(stars)) 158s > matrix(1:4,2) 158s [,1] [,2] 158s [1,] 1 3 158s [2,] 2 4 158s > m = matrix(1:4,2) 158s > s = st_as_stars(m) 158s > 158s > s = st_set_dimensions(s, st_dimensions(s), xy = NULL) 158s > sfc = st_sfc(st_point(0:1), st_point(3:2)) 158s > s = st_set_dimensions(s, 1, sfc) |> st_set_crs(4326) 158s > tm = as.POSIXct("2023-03-04 12:35") + c(0, 3600) 158s > s = st_set_dimensions(s, 2, tm) 158s > f = tempfile(fileext = ".nc") 158s > write_mdim(s, f, as_float = FALSE) 158s > s2 = read_mdim(f) 158s Warning messages: 158s 1: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 158s GDAL Error 6: SetIndexingVariable() not implemented 158s 2: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 158s GDAL Error 6: SetIndexingVariable() not implemented 158s > #print(s2) 158s > print(all.equal(s, s2, check.attributes = FALSE)) 158s [1] TRUE 158s > print(all.equal(s, s2)) 158s [1] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"refsys\": Component \"input\": 1 string mismatch >" 158s [2] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"refsys\": Component \"wkt\": 1 string mismatch >" 158s [3] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"values\": Attributes: < Component \"crs\": Component \"input\": 1 string mismatch > >" 158s [4] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"values\": Attributes: < Component \"crs\": Component \"wkt\": 1 string mismatch > >" 158s [5] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"offset\": 'tzone' attributes are inconsistent ('' and 'UTC') >" 158s [6] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"point\": 'is.NA' value mismatch: 1 in current 0 in target >" 158s > 158s > st_crs(sfc) = st_crs(s2) 158s > st_crs(s) = st_crs(s2) 158s > tm = as.Date("2023-02-25") + 0:1 158s > sd = st_set_dimensions(s, 2, tm) 158s > print(sd) 158s stars object with 2 dimensions and 1 attribute 158s attribute(s): 158s Min. 1st Qu. Median Mean 3rd Qu. Max. 158s A1 1 1.75 2.5 2.5 3.25 4 158s dimension(s): 158s from to offset delta refsys point values 158s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 158s X2 1 2 2023-02-25 1 days Date FALSE NULL 158s > sd = st_set_dimensions(sd, 1, sfc) 158s > print(sd) 158s stars object with 2 dimensions and 1 attribute 158s attribute(s): 158s Min. 1st Qu. Median Mean 3rd Qu. Max. 158s A1 1 1.75 2.5 2.5 3.25 4 158s dimension(s): 158s from to offset delta refsys point values 158s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 158s X2 1 2 2023-02-25 1 days Date FALSE NULL 158s > f = tempfile(fileext = ".nc") 158s > write_mdim(sd, f) 158s > sd2 = read_mdim(f) 158s Warning messages: 158s 1: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 158s GDAL Error 6: SetIndexingVariable() not implemented 158s 2: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 158s GDAL Error 6: SetIndexingVariable() not implemented 158s > print(sd2) 158s stars object with 2 dimensions and 1 attribute 158s attribute(s): 158s Min. 1st Qu. Median Mean 3rd Qu. Max. 158s A1 1 1.75 2.5 2.5 3.25 4 158s dimension(s): 158s from to offset delta refsys point values 158s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 158s X2 1 2 2023-02-25 1 days Date NA NULL 158s > print(all.equal(sd, sd2, check.attributes = FALSE)) 158s [1] TRUE 158s > print(all.equal(sd, sd2)) 158s [1] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"point\": 'is.NA' value mismatch: 1 in current 0 in target >" 158s > # if (.Platform$OS.type == "unix") { 158s > # print(read_mdim(paste0("/vsizip/", (system.file("zarr/sic_daily_sample.zarr.zip", package = "stars")))) 158s > # } 158s > 158s BEGIN TEST nc.R 158s 158s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 158s Copyright (C) 2025 The R Foundation for Statistical Computing 158s Platform: x86_64-pc-linux-gnu 158s 158s R is free software and comes with ABSOLUTELY NO WARRANTY. 158s You are welcome to redistribute it under certain conditions. 158s Type 'license()' or 'licence()' for distribution details. 158s 158s R is a collaborative project with many contributors. 158s Type 'contributors()' for more information and 158s 'citation()' on how to cite R or R packages in publications. 158s 158s Type 'demo()' for some demos, 'help()' for on-line help, or 158s 'help.start()' for an HTML browser interface to help. 158s Type 'q()' to quit R. 158s 158s > # examples with the sf::nc polygon dataset NOT ABOUT NETCDF's, see e.g. stars.R netcdf.R 158s > suppressPackageStartupMessages(library(sf)) 159s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf")) 159s > m = st_set_geometry(nc, NULL) 159s > n = as.matrix(m[c("BIR74", "SID74", "NWBIR74", "BIR79", "SID79", "NWBIR79")]) 159s > dim(n) = c(county = 100, var = 3, year = 2) 159s > dimnames(n) = list(county = nc$NAME, var = c("BIR", "SID", "NWBIR"), year = c(1974, 1979)) 159s > suppressPackageStartupMessages(library(stars)) 159s > (st = st_as_stars(pop = n)) 159s stars object with 3 dimensions and 1 attribute 159s attribute(s): 159s Min. 1st Qu. Median Mean 3rd Qu. Max. 159s pop 0 8 538 1657.032 1784 30757 159s dimension(s): 159s from to values 159s county 1 100 Ashe,...,Brunswick 159s var 1 3 BIR , SID , NWBIR 159s year 1 2 1974, 1979 159s > foo <- st %>% st_set_dimensions(1, st_geometry(nc)) # %>% st_set_dimensions(3, c(1974, 1979)) 159s > st %>% st_set_dimensions(1, st_geometry(nc)) %>% st_set_dimensions(names = c("geometries", "var", "year")) 159s stars object with 3 dimensions and 1 attribute 159s attribute(s): 159s Min. 1st Qu. Median Mean 3rd Qu. Max. 159s pop 0 8 538 1657.032 1784 30757 159s dimension(s): 159s from to refsys point 159s geometries 1 100 NAD27 FALSE 159s var 1 3 NA NA 159s year 1 2 NA NA 159s values 159s geometries MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 159s var BIR , SID , NWBIR 159s year 1974, 1979 159s > foo 159s stars object with 3 dimensions and 1 attribute 159s attribute(s): 159s Min. 1st Qu. Median Mean 3rd Qu. Max. 159s pop 0 8 538 1657.032 1784 30757 159s dimension(s): 159s from to refsys point 159s county 1 100 NAD27 FALSE 159s var 1 3 NA NA 159s year 1 2 NA NA 159s values 159s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 159s var BIR , SID , NWBIR 159s year 1974, 1979 159s > st_bbox(foo) 159s xmin ymin xmax ymax 159s -84.32385 33.88199 -75.45698 36.58965 159s > (x = st_as_sf(foo)) 159s Simple feature collection with 100 features and 6 fields 159s Geometry type: MULTIPOLYGON 159s Dimension: XY 159s Bounding box: xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965 159s Geodetic CRS: NAD27 159s First 10 features: 159s BIR.1974 SID.1974 NWBIR.1974 BIR.1979 SID.1979 NWBIR.1979 159s 1 1091 1 10 1364 0 19 159s 2 487 0 10 542 3 12 159s 3 3188 5 208 3616 6 260 159s 4 508 1 123 830 2 145 159s 5 1421 9 1066 1606 3 1197 159s 6 1452 7 954 1838 5 1237 159s 7 286 0 115 350 2 139 159s 8 420 0 254 594 2 371 159s 9 968 4 748 1190 2 844 159s 10 1612 1 160 2038 5 176 159s county 159s 1 MULTIPOLYGON (((-81.47276 3... 159s 2 MULTIPOLYGON (((-81.23989 3... 159s 3 MULTIPOLYGON (((-80.45634 3... 159s 4 MULTIPOLYGON (((-76.00897 3... 159s 5 MULTIPOLYGON (((-77.21767 3... 159s 6 MULTIPOLYGON (((-76.74506 3... 159s 7 MULTIPOLYGON (((-76.00897 3... 159s 8 MULTIPOLYGON (((-76.56251 3... 159s 9 MULTIPOLYGON (((-78.30876 3... 159s 10 MULTIPOLYGON (((-80.02567 3... 159s > frac = function(x) x[2] / x[1] 159s > frac2 = function(x) c(sidsr = x[2] / x[1], nwbr = x[3] / x[1]) 159s > frac2an = function(x) c(x[2] / x[1], x[3] / x[1]) 159s > st_apply(foo, c(1,3), frac) 159s stars object with 2 dimensions and 1 attribute 159s attribute(s): 159s Min. 1st Qu. Median Mean 3rd Qu. Max. 159s frac 0 0.001197874 0.001930504 0.002042241 0.002599348 0.00955414 159s dimension(s): 159s from to refsys point 159s county 1 100 NAD27 FALSE 159s year 1 2 NA NA 159s values 159s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 159s year 1974, 1979 159s > st_apply(foo, c(1,3), frac2) 159s stars object with 3 dimensions and 1 attribute 159s attribute(s): 159s Min. 1st Qu. Median Mean 3rd Qu. Max. 159s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 159s dimension(s): 159s from to refsys point 159s frac2 1 2 NA NA 159s county 1 100 NAD27 FALSE 159s year 1 2 NA NA 159s values 159s frac2 sidsr, nwbr 159s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 159s year 1974, 1979 159s > st_apply(foo, c(1,3), frac2an) 159s stars object with 3 dimensions and 1 attribute 159s attribute(s): 159s Min. 1st Qu. Median Mean 3rd Qu. Max. 159s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 159s dimension(s): 159s from to refsys point 159s frac2an 1 2 NA NA 159s county 1 100 NAD27 FALSE 159s year 1 2 NA NA 159s values 159s frac2an NULL 159s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 159s year 1974, 1979 159s > library(abind) 159s > (x = aperm(st_apply(foo, c(1,3), frac2), c(2,3,1))) 159s stars object with 3 dimensions and 1 attribute 159s attribute(s): 159s Min. 1st Qu. Median Mean 3rd Qu. Max. 159s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 159s dimension(s): 159s from to refsys point 159s county 1 100 NAD27 FALSE 159s year 1 2 NA NA 159s frac2 1 2 NA NA 159s values 159s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 159s year 1974, 1979 159s frac2 sidsr, nwbr 159s > y = aperm(st_apply(foo, c(1,3), frac2), c("county","year","frac2")) 159s > all.equal(st_dimensions(x), st_dimensions(y)) 159s [1] TRUE 159s > 159s > split(foo, 2) 159s stars object with 2 dimensions and 3 attributes 159s attribute(s): 159s Min. 1st Qu. Median Mean 3rd Qu. Max. 159s BIR 248 1176.75 2265 3761.770 4450.75 30757 159s SID 0 2.00 5 7.515 9.00 57 159s NWBIR 1 206.00 742 1201.810 1315.75 11631 159s dimension(s): 159s from to refsys point 159s county 1 100 NAD27 FALSE 159s year 1 2 NA NA 159s values 159s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 159s year 1974, 1979 159s > split(foo, 3) 159s stars object with 2 dimensions and 2 attributes 159s attribute(s): 159s Min. 1st Qu. Median Mean 3rd Qu. Max. 159s 1974 0 8 501.5 1452.367 1580.50 21588 159s 1979 0 9 614.0 1861.697 2040.25 30757 159s dimension(s): 159s from to refsys point 159s county 1 100 NAD27 FALSE 159s var 1 3 NA NA 159s values 159s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 159s var BIR , SID , NWBIR 159s > 159s > st_crs(foo) 159s Coordinate Reference System: 159s User input: NAD27 159s wkt: 159s GEOGCRS["NAD27", 159s DATUM["North American Datum 1927", 159s ELLIPSOID["Clarke 1866",6378206.4,294.978698213898, 159s LENGTHUNIT["metre",1]]], 159s PRIMEM["Greenwich",0, 159s ANGLEUNIT["degree",0.0174532925199433]], 159s CS[ellipsoidal,2], 159s AXIS["geodetic latitude (Lat)",north, 159s ORDER[1], 159s ANGLEUNIT["degree",0.0174532925199433]], 159s AXIS["geodetic longitude (Lon)",east, 159s ORDER[2], 159s ANGLEUNIT["degree",0.0174532925199433]], 159s USAGE[ 159s SCOPE["Geodesy."], 159s AREA["North and central America: Antigua and Barbuda - onshore. Bahamas - onshore plus offshore over internal continental shelf only. Belize - onshore. British Virgin Islands - onshore. Canada onshore - Alberta, British Columbia, Manitoba, New Brunswick, Newfoundland and Labrador, Northwest Territories, Nova Scotia, Nunavut, Ontario, Prince Edward Island, Quebec, Saskatchewan and Yukon - plus offshore east coast. Cuba - onshore and offshore. El Salvador - onshore. Guatemala - onshore. Honduras - onshore. Panama - onshore. Puerto Rico - onshore. Mexico - onshore plus offshore east coast. Nicaragua - onshore. United States (USA) onshore and offshore - Alabama, Alaska, Arizona, Arkansas, California, Colorado, Connecticut, Delaware, Florida, Georgia, Idaho, Illinois, Indiana, Iowa, Kansas, Kentucky, Louisiana, Maine, Maryland, Massachusetts, Michigan, Minnesota, Mississippi, Missouri, Montana, Nebraska, Nevada, New Hampshire, New Jersey, New Mexico, New York, North Carolina, North Dakota, Ohio, Oklahoma, Oregon, Pennsylvania, Rhode Island, South Carolina, South Dakota, Tennessee, Texas, Utah, Vermont, Virginia, Washington, West Virginia, Wisconsin and Wyoming - plus offshore . US Virgin Islands - onshore."], 159s BBOX[7.15,167.65,83.17,-47.74]], 159s ID["EPSG",4267]] 159s > plot(foo) 159s > 159s > # subset vector cube: 159s > foo[nc[1]] 159s stars object with 3 dimensions and 1 attribute 159s attribute(s): 159s Min. 1st Qu. Median Mean 3rd Qu. Max. 159s pop 0 8 538 1657.032 1784 30757 159s dimension(s): 159s from to refsys point 159s county 1 100 NAD27 FALSE 159s var 1 3 NA NA 159s year 1 2 NA NA 159s values 159s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 159s var BIR , SID , NWBIR 159s year 1974, 1979 159s > 159s BEGIN TEST plot.R 159s 159s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 159s Copyright (C) 2025 The R Foundation for Statistical Computing 159s Platform: x86_64-pc-linux-gnu 159s 159s R is free software and comes with ABSOLUTELY NO WARRANTY. 159s You are welcome to redistribute it under certain conditions. 159s Type 'license()' or 'licence()' for distribution details. 159s 159s R is a collaborative project with many contributors. 159s Type 'contributors()' for more information and 159s 'citation()' on how to cite R or R packages in publications. 159s 159s Type 'demo()' for some demos, 'help()' for on-line help, or 159s 'help.start()' for an HTML browser interface to help. 159s Type 'q()' to quit R. 159s 159s > suppressPackageStartupMessages(library(stars)) 160s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 160s + data(air) # this loads several datasets in .GlobalEnv 160s + dim(air) 160s + d = st_dimensions(station = st_as_sfc(stations), time = dates) 160s + aq = st_as_stars(list(PM10 = air), dimensions = d) 160s + image(aperm(log(aq), 2:1), main = "NA pattern (white) in PM10 station time series") 160s + st_geometry(aq) 160s + } 160s Geometry set for 70 features 160s Geometry type: POINT 160s Dimension: XY 160s Bounding box: xmin: 6.28107 ymin: 47.80847 xmax: 14.78617 ymax: 54.92497 160s Geodetic CRS: +proj=longlat +datum=WGS84 +no_defs 160s POINT (9.585911 53.67057) 160s First 5 geometries: 160s POINT (9.68503 53.52418) 160s POINT (9.791584 54.07312) 160s POINT (13.64701 52.44775) 160s > 160s > csv = system.file("tif/ESACCI-LC-Legend.csv", package = "starsdata") 160s POINT (13.29635 52.65315) 160s > if (csv != "") { 160s + rgb = read.csv(csv, header = TRUE, sep = ";") 160s + luc = read_stars(system.file("tif/LUC3.tif", package = "starsdata")) 160s + plot(luc, rgb = rgb, axes = TRUE, key.pos = NULL) 160s + } 160s > 160s > # https://github.com/r-spatial/stars/issues/233 : 160s > nc = read_sf(system.file("shape/nc.shp", package = "sf")) 160s > output = st_as_stars(st_bbox(nc), nx = 1, ny = 1, values = 1) 160s > plot(output) 160s > 160s Warning message: 160s In plot.stars(output) : 160s breaks="quantile" leads to a single class; maybe try breaks="equal" instead? 160s BEGIN TEST predict.R 161s 161s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 161s Copyright (C) 2025 The R Foundation for Statistical Computing 161s Platform: x86_64-pc-linux-gnu 161s 161s R is free software and comes with ABSOLUTELY NO WARRANTY. 161s You are welcome to redistribute it under certain conditions. 161s Type 'license()' or 'licence()' for distribution details. 161s 161s R is a collaborative project with many contributors. 161s Type 'contributors()' for more information and 161s 'citation()' on how to cite R or R packages in publications. 161s 161s Type 'demo()' for some demos, 'help()' for on-line help, or 161s 'help.start()' for an HTML browser interface to help. 161s Type 'q()' to quit R. 161s 161s > suppressPackageStartupMessages(library(stars)) 161s > # predict: 161s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 161s > (x = read_stars(tif)) 161s stars object with 3 dimensions and 1 attribute 161s attribute(s): 161s Min. 1st Qu. Median Mean 3rd Qu. Max. 161s L7_ETMs.tif 1 54 69 68.91242 86 255 161s dimension(s): 161s from to offset delta refsys point x/y 161s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 161s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 161s band 1 6 NA NA NA NA 161s > st_crs(x) = st_crs(x) # cleans trailing space 161s > model = lm(x~L7_ETMs.tif, head(as.data.frame(x), 50)) 161s > x = predict(x, model) 162s > 162s > (y = read_stars(tif, proxy = TRUE)) 162s stars_proxy object with 1 attribute in 1 file(s): 162s $L7_ETMs.tif 162s [1] "[...]/L7_ETMs.tif" 162s 162s dimension(s): 162s from to offset delta refsys point x/y 162s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 162s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 162s band 1 6 NA NA NA NA 162s > (yp = predict(y, model)) 162s stars_proxy object with 1 attribute in 1 file(s): 162s $L7_ETMs.tif 162s [1] "[...]/L7_ETMs.tif" 162s 162s dimension(s): 162s from to offset delta refsys point x/y 162s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 162s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 162s band 1 6 NA NA NA NA 162s call_list: 162s [[1]] 162s predict(object = object, model = model) 162s attr(,".Environment") 162s 162s 162s This object has pending lazy operations: dimensions as printed may not reflect this. 162s > all.equal(x, st_as_stars(yp)) 162s [1] TRUE 162s > 162s > yy = st_set_dimensions(y, 3, values = paste0("band", 1:6)) 162s > (y_spl = split(yy, 3)) 162s stars_proxy object with 1 attribute in 1 file(s): 162s $L7_ETMs.tif 162s [1] "[...]/L7_ETMs.tif" 162s 162s dimension(s): 162s from to offset delta refsys point values 162s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 162s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 162s band 1 6 NA NA NA NA band1,...,band6 162s x/y 162s x [x] 162s y [y] 162s band 162s call_list: 162s [[1]] 162s split(x = x, 3) 162s attr(,".Environment") 162s 162s 162s This object has pending lazy operations: dimensions as printed may not reflect this. 162s > as.data.frame(st_as_stars(split(yy, 3)))[1:3,] 162s x y band1 band2 band3 band4 band5 band6 162s 1 288790.5 9120747 69 56 46 79 86 46 162s 2 288819.0 9120747 69 57 49 75 88 49 162s 3 288847.5 9120747 63 52 45 66 75 41 162s > 163s BEGIN TEST proxy.R 163s 163s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 163s Copyright (C) 2025 The R Foundation for Statistical Computing 163s Platform: x86_64-pc-linux-gnu 163s 163s R is free software and comes with ABSOLUTELY NO WARRANTY. 163s You are welcome to redistribute it under certain conditions. 163s Type 'license()' or 'licence()' for distribution details. 163s 163s R is a collaborative project with many contributors. 163s Type 'contributors()' for more information and 163s 'citation()' on how to cite R or R packages in publications. 163s 163s Type 'demo()' for some demos, 'help()' for on-line help, or 163s 'help.start()' for an HTML browser interface to help. 163s Type 'q()' to quit R. 163s 163s > Sys.setenv(TZ="UTC") 163s > suppressPackageStartupMessages(library(sf)) 163s > suppressPackageStartupMessages(library(stars)) 163s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 163s > (r = read_stars(tif, proxy = TRUE)) 163s stars_proxy object with 1 attribute in 1 file(s): 163s $L7_ETMs.tif 163s [1] "[...]/L7_ETMs.tif" 163s 163s dimension(s): 163s from to offset delta refsys point x/y 163s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 163s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 163s band 1 6 NA NA NA NA 163s > if (interactive()) { 163s + plot(r) 163s + } 163s > dim(r) 163s x y band 163s 349 352 6 163s > r[,,,2:3] 163s stars_proxy object with 1 attribute in 1 file(s): 163s $L7_ETMs.tif 163s [1] "[...]/L7_ETMs.tif" 163s 163s dimension(s): 163s from to offset delta refsys point x/y 163s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 163s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 163s band 2 3 NA NA NA NA 163s > r+r 163s stars_proxy object with 1 attribute in 1 file(s): 163s $L7_ETMs.tif 163s [1] "[...]/L7_ETMs.tif" 163s 163s dimension(s): 163s from to offset delta refsys point x/y 163s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 163s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 163s band 1 6 NA NA NA NA 163s call_list: 163s [[1]] 163s e1 + e2 163s attr(,".Environment") 163s 163s 163s This object has pending lazy operations: dimensions as printed may not reflect this. 163s > st_as_stars(sin(r), downsample = 2) 163s stars object with 3 dimensions and 1 attribute 163s attribute(s): 163s Min. 1st Qu. Median Mean 3rd Qu. Max. 163s L7_ETMs.tif -0.9999902 -0.676772 0.0353983 0.01655317 0.7210377 0.9999119 163s dimension(s): 163s from to offset delta refsys point x/y 163s x 1 117 288776 85.01 SIRGAS 2000 / UTM zone 25S FALSE [x] 163s y 1 118 9120761 -85.02 SIRGAS 2000 / UTM zone 25S FALSE [y] 163s band 1 6 NA NA NA NA 163s > aperm(r, c(3,2,1)) 163s stars_proxy object with 1 attribute in 1 file(s): 163s $L7_ETMs.tif 163s [1] "[...]/L7_ETMs.tif" 163s 163s dimension(s): 163s from to offset delta refsys point x/y 163s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 163s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 163s band 1 6 NA NA NA NA 163s call_list: 163s [[1]] 163s aperm(a = a, perm = perm) 163s attr(,".Environment") 163s 163s 163s This object has pending lazy operations: dimensions as printed may not reflect this. 163s > if (interactive()) { 163s + plot(r) 163s + } 163s > (xx = c(r,r)) 163s stars_proxy object with 2 attributes in 2 file(s): 163s $L7_ETMs.tif 163s [1] "[...]/L7_ETMs.tif" 163s 163s $L7_ETMs.tif 163s [1] "[...]/L7_ETMs.tif" 163s 163s dimension(s): 163s from to offset delta refsys point x/y 163s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 163s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 163s band 1 6 NA NA NA NA 163s > st_redimension(xx) 163s stars_proxy object with 1 attribute in 2 file(s): 163s $L7_ETMs.tif.L7_ETMs.tif 163s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 163s 163s dimension(s): 163s from to offset delta refsys point 163s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 163s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 163s band 1 6 NA NA NA NA 163s new_dim 1 2 NA NA NA NA 163s values x/y 163s x NULL [x] 163s y NULL [y] 163s band NULL 163s new_dim L7_ETMs.tif, L7_ETMs.tif 163s > st_as_stars(r) 163s stars object with 3 dimensions and 1 attribute 163s attribute(s): 163s Min. 1st Qu. Median Mean 3rd Qu. Max. 163s L7_ETMs.tif 1 54 69 68.91242 86 255 163s dimension(s): 163s from to offset delta refsys point x/y 163s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 163s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 163s band 1 6 NA NA NA NA 163s > (y = st_apply(r, 1:2, max)) 163s stars_proxy object with 1 attribute in 1 file(s): 163s $L7_ETMs.tif 163s [1] "[...]/L7_ETMs.tif" 163s 163s dimension(s): 163s from to offset delta refsys point x/y 163s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 163s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 163s band 1 6 NA NA NA NA 163s call_list: 163s [[1]] 163s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 163s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 163s attr(,".Environment") 163s 163s 163s This object has pending lazy operations: dimensions as printed may not reflect this. 163s > (yy = st_as_stars(y, downsample = 1)) 163s stars object with 2 dimensions and 1 attribute 163s attribute(s): 163s Min. 1st Qu. Median Mean 3rd Qu. Max. 163s max 55 85 96 99.38568 113 255 163s dimension(s): 163s from to offset delta refsys point x/y 163s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE [x] 163s y 1 176 9120761 -57 SIRGAS 2000 / UTM zone 25S FALSE [y] 163s > (y = adrop(st_apply(r, c("x", "y"), max))) 163s stars_proxy object with 1 attribute in 1 file(s): 163s $L7_ETMs.tif 163s [1] "[...]/L7_ETMs.tif" 163s 163s dimension(s): 163s from to offset delta refsys point x/y 163s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 163s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 163s band 1 6 NA NA NA NA 163s call_list: 163s [[1]] 163s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 163s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 163s attr(,".Environment") 163s 163s 163s [[2]] 163s adrop(x = x, drop = drop) 163s attr(,".Environment") 163s 163s 163s This object has pending lazy operations: dimensions as printed may not reflect this. 163s > (yy = st_as_stars(y, downsample = 1)) 163s stars object with 2 dimensions and 1 attribute 163s attribute(s): 163s Min. 1st Qu. Median Mean 3rd Qu. Max. 163s max 55 85 96 99.38568 113 255 163s dimension(s): 163s from to offset delta refsys point x/y 163s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE [x] 163s y 1 176 9120761 -57 SIRGAS 2000 / UTM zone 25S FALSE [y] 163s > plot(yy) 163s > (y = adrop(st_apply(r, c("x", "band"), max))) 163s stars_proxy object with 1 attribute in 1 file(s): 163s $L7_ETMs.tif 163s [1] "[...]/L7_ETMs.tif" 163s 163s dimension(s): 164s from to offset delta refsys point x/y 164s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 164s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 164s band 1 6 NA NA NA NA 164s call_list: 164s [[1]] 164s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 164s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 164s attr(,".Environment") 164s 164s 164s [[2]] 164s adrop(x = x, drop = drop) 164s attr(,".Environment") 164s 164s 164s This object has pending lazy operations: dimensions as printed may not reflect this. 164s > (yy = st_as_stars(y, downsample = 1)) 164s stars object with 2 dimensions and 1 attribute 164s attribute(s): 164s Min. 1st Qu. Median Mean 3rd Qu. Max. 164s max 77 111 133 137.8505 157 255 164s dimension(s): 164s from to offset delta refsys point 164s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE 164s band 1 6 NA NA NA NA 164s Warning message: 164s In FUN(X[[i]], ...) : 164s st_apply on x/y dimensions applied to downsampled image(s) 164s > rm(yy) 164s > 164s > (xx = c(r,r)) 164s stars_proxy object with 2 attributes in 2 file(s): 164s $L7_ETMs.tif 164s [1] "[...]/L7_ETMs.tif" 164s 164s $L7_ETMs.tif 164s [1] "[...]/L7_ETMs.tif" 164s 164s dimension(s): 164s from to offset delta refsys point x/y 164s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 164s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 164s band 1 6 NA NA NA NA 164s > names(xx) = c("a", "b") 164s > xx["a"] 164s stars_proxy object with 1 attribute in 1 file(s): 164s $a 164s [1] "[...]/L7_ETMs.tif" 164s 164s dimension(s): 164s from to offset delta refsys point x/y 164s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 164s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 164s band 1 6 NA NA NA NA 164s > pt = st_point(c(x = 290462.103109179, y = 9114202.32594085)) 164s > buf = st_buffer(st_sfc(pt, crs = st_crs(r)), 1500) 164s > buf = st_sfc(st_polygon(list(st_buffer(pt, 1500)[[1]], st_buffer(pt, 1000)[[1]])), 164s + crs = st_crs(r)) 164s > r = r[buf] # crops 164s > r = r[buf, epsilon = 1e-5] # crops with shrinked bounding box 164s > 164s > # c: 164s > f = system.file("netcdf/avhrr-only-v2.19810902.nc", package = "starsdata") 164s > if (FALSE && f != "") { 164s + files = c("avhrr-only-v2.19810901.nc", 164s + "avhrr-only-v2.19810902.nc", 164s + "avhrr-only-v2.19810903.nc", 164s + "avhrr-only-v2.19810904.nc", 164s + "avhrr-only-v2.19810905.nc", 164s + "avhrr-only-v2.19810906.nc", 164s + "avhrr-only-v2.19810907.nc", 164s + "avhrr-only-v2.19810908.nc", 164s + "avhrr-only-v2.19810909.nc") 164s + l = list() 164s + for (f in files) { 164s + from = system.file(paste0("netcdf/", f), package = "starsdata") 164s + l[[f]] = read_stars(from, sub = c("sst", "anom"), proxy = TRUE) 164s + } 164s + ret = do.call(c, l) 164s + print(ret) 164s + all = system.file(paste0("netcdf/", files), package = "starsdata") 164s + ret = read_stars(all, sub = c("sst", "anom")) 164s + print(ret) 164s + print(st_redimension(ret)) # collapse the two attributes into new dimension 164s + 164s + try(ret <- c(l[[1]], l[[2]], l[[3]], along = list(times = as.Date("1981-09-01") + 0:2))) 164s + #print(ret) 164s + #ret = adrop(adrop(c(l[[1]], l[[2]], l[[3]], along = "times"))) 164s + #print(ret) 164s + ret <- st_redimension(l[[1]], along = list(times = as.Date("1981-09-01") + 0:1)) 164s + print(ret) 164s + } 164s > 164s > # demonstrate that environments work: 164s > x = read_stars(tif, proxy = TRUE) 164s > f = function(x) { 164s + g = function(xx) { 164s + ndvi = function(z1, z2, z3, z4, z5, z6) (z2-z1)/(z2+z1) 164s + st_apply(xx, 1:2, ndvi) 164s + } 164s + g(x) 164s + } 164s > (x = f(x)) 164s stars_proxy object with 1 attribute in 1 file(s): 164s $L7_ETMs.tif 164s [1] "[...]/L7_ETMs.tif" 164s 164s dimension(s): 164s from to offset delta refsys point x/y 164s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 164s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 164s band 1 6 NA NA NA NA 164s call_list: 164s [[1]] 164s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 164s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 164s attr(,".Environment") 164s 164s 164s This object has pending lazy operations: dimensions as printed may not reflect this. 164s > st_as_stars(x) 164s stars object with 2 dimensions and 1 attribute 164s attribute(s): 164s Min. 1st Qu. Median Mean 3rd Qu. Max. 164s ndvi -0.2828283 -0.1081081 -0.08287293 -0.08464615 -0.05882353 0.09259259 164s dimension(s): 164s from to offset delta refsys point x/y 164s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 164s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 164s > 164s BEGIN TEST raster.R 164s 164s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 164s Copyright (C) 2025 The R Foundation for Statistical Computing 164s Platform: x86_64-pc-linux-gnu 164s 164s R is free software and comes with ABSOLUTELY NO WARRANTY. 164s You are welcome to redistribute it under certain conditions. 164s Type 'license()' or 'licence()' for distribution details. 164s 164s R is a collaborative project with many contributors. 164s Type 'contributors()' for more information and 164s 'citation()' on how to cite R or R packages in publications. 164s 164s Type 'demo()' for some demos, 'help()' for on-line help, or 164s 'help.start()' for an HTML browser interface to help. 164s Type 'q()' to quit R. 164s 164s > options(rgdal_show_exportToProj4_warnings = "none") 164s > suppressPackageStartupMessages(library(stars)) 164s > 164s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require("raster", quietly = TRUE) && 164s + suppressPackageStartupMessages(require("terra", quietly = TRUE))) { 164s + 164s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 164s + (x = read_stars(tif)) 164s + (r = as(x, "Raster")) 164s + (y = st_as_stars(r)) 164s + 164s + # single band: 164s + x = adrop(x[,,,1]) 164s + r = as(x, "Raster") 164s + (y = st_as_stars(r)) 164s + 164s + # proxy: 164s + (x = read_stars(tif, proxy = TRUE)) 164s + (r = as(x, "Raster")) 164s + (y = st_as_stars(r)) 164s + (y2 = st_as_stars(r, proxy = TRUE)) 164s + } 167s stars_proxy object with 1 attribute in 1 file(s): 167s $L7_ETMs.tif 167s [1] "[...]/L7_ETMs.tif" 167s 167s dimension(s): 167s from to offset delta refsys point x/y 167s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 167s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 167s band 1 6 NA NA NA NA 167s > 167s > if (require(terra, quietly = TRUE)) { 167s + ## terra ------------- 167s + stopifnot(require(terra)) 167s + (x = read_stars(tif)) 167s + (r = as(x, "SpatRaster")) 167s + (y = st_as_stars(r)) 167s + 167s + # single band: 167s + x = adrop(x[,,,1]) 167s + r = as(x, "SpatRaster") 167s + (y = st_as_stars(r)) 167s + 167s + # proxy: 167s + (x = read_stars(tif, proxy = TRUE)) 167s + (r = as(x, "SpatRaster")) 167s + (y = st_as_stars(r)) 167s + (y2 = st_as_stars(r, proxy = TRUE)) 167s + 167s + f = system.file("tif/lc.tif", package = "stars") 167s + lc = read_stars(system.file("tif/lc.tif", package = "stars")) 167s + levels(lc[[1]]) 167s + r = rast(lc) 167s + e = attr(lc[[1]], "exclude") 167s + 167s + if (packageVersion("terra") >= "1.5.48") { 167s + 167s + print(all.equal(terra::levels(r)[[1]][,2], terra::levels(rast(f))[[1]][!e,2])) 167s + print(all.equal(terra::coltab(r)[[1]][!e,], terra::coltab(rast(f))[[1]][!e,], check.attributes = FALSE)) 167s + 167s + r<- rast(nrow=10, ncol=10) 167s + set.seed(5) 167s + values(r)<- sample(1:3, size = ncell(r), replace = TRUE) 167s + levels(r) <- data.frame(ID=1:3, category = c("c1", "c2", "c3")) 167s + 167s + r2<- rast(nrow=10, ncol=10) 167s + set.seed(6) 167s + values(r2)<- sample(c(0,2,3), size = ncell(r2), replace = TRUE) 167s + levels(r2) <- data.frame(ID=c(0,2,3), category = c("x1", "x2", "x3")) 167s + 167s + r3<- c(r,r2) 167s + names(r3)<- c("lyr.1", "lyr.2") 167s + 167s + r3_stars<- st_as_stars(r3) 167s + 167s + st_redimension(r3_stars) |> print() 167s + rast(r3_stars) |> levels() |> print() 167s + 167s + m = matrix(1:121, 11, 11) 167s + bb = st_bbox(c(xmin=0, xmax=11, ymin=0, ymax=11)) 167s + s = st_as_stars(bb, values = m) 167s + r = rast(s) 167s + aggregate(r, 2) |> st_as_stars() -> r.s 167s + stopifnot(isTRUE(all.equal(r.s[,1:5,1:5], st_downsample(s, 1, FUN = mean)))) 167s + } 167s + } 168s [1] TRUE 168s [1] TRUE 168s stars object with 3 dimensions and 1 attribute 168s attribute(s): 168s lyr.1.lyr.2 168s c1:34 168s c2:32 168s c3:34 168s x1:28 168s x2:37 168s x3:35 168s dimension(s): 168s from to offset delta refsys values x/y 168s x 1 10 -180 36 WGS 84 (CRS84) NULL [x] 168s y 1 10 90 -18 WGS 84 (CRS84) NULL [y] 168s new_dim 1 2 NA NA NA lyr.1, lyr.2 168s [[1]] 168s IDs categories 168s 1 1 c1 168s 2 2 c2 168s 3 3 c3 168s 168s [[2]] 168s IDs categories 168s 1 0 x1 168s 2 2 x2 168s 3 3 x3 168s 168s > 168s > 168s BEGIN TEST rasterize.R 168s 168s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 168s Copyright (C) 2025 The R Foundation for Statistical Computing 168s Platform: x86_64-pc-linux-gnu 168s 168s R is free software and comes with ABSOLUTELY NO WARRANTY. 168s You are welcome to redistribute it under certain conditions. 168s Type 'license()' or 'licence()' for distribution details. 168s 168s R is a collaborative project with many contributors. 168s Type 'contributors()' for more information and 168s 'citation()' on how to cite R or R packages in publications. 168s 168s Type 'demo()' for some demos, 'help()' for on-line help, or 168s 'help.start()' for an HTML browser interface to help. 168s Type 'q()' to quit R. 168s 168s > suppressPackageStartupMessages(library(stars)) 169s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf")) 169s > (x = st_rasterize(nc)) # default grid: 169s stars object with 2 dimensions and 12 attributes 169s attribute(s): 169s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 169s AREA 0.042 0.108 0.142 1.451932e-01 0.181 0.241 30904 169s PERIMETER 0.999 1.461 1.716 1.786110e+00 2.004 3.640 30904 169s CNTY_ 1825.000 1907.000 1989.000 1.998403e+03 2085.000 2241.000 30904 169s CNTY_ID 1825.000 1907.000 1989.000 1.998403e+03 2085.000 2241.000 30904 169s FIPSNO 37001.000 37049.000 37101.000 3.710042e+04 37153.000 37199.000 30904 169s CRESS_ID 1.000 25.000 51.000 5.071206e+01 77.000 100.000 30904 169s BIR74 248.000 1323.000 2648.000 3.791637e+03 4139.000 21588.000 30904 169s SID74 0.000 3.000 5.000 7.891985e+00 10.000 44.000 30904 169s NWBIR74 1.000 297.000 844.000 1.246210e+03 1396.000 8027.000 30904 169s BIR79 319.000 1606.000 3108.000 4.852046e+03 5400.000 30757.000 30904 169s SID79 0.000 3.000 6.000 9.584098e+00 13.000 57.000 30904 169s NWBIR79 3.000 360.000 1058.000 1.604642e+03 1524.000 11631.000 30904 169s dimension(s): 169s from to offset delta refsys point x/y 169s x 1 461 -84.32 0.01925 NAD27 FALSE [x] 169s y 1 141 36.59 -0.01925 NAD27 FALSE [y] 169s > plot(x, axes = TRUE) 169s > # a bit more customized grid: 169s > (x = st_rasterize(nc, st_as_stars(st_bbox(nc), nx = 100, ny = 50, values = NA_real_))) 169s stars object with 2 dimensions and 12 attributes 169s attribute(s): 169s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 169s AREA 0.042 0.108 0.142 0.145536 0.181 0.241 2373 169s PERIMETER 0.999 1.470 1.716 1.789032 2.004 3.640 2373 169s CNTY_ 1825.000 1908.000 1989.000 1999.761325 2088.000 2241.000 2373 169s CNTY_ID 1825.000 1908.000 1989.000 1999.761325 2088.000 2241.000 2373 169s FIPSNO 37001.000 37049.000 37101.000 37100.327750 37151.000 37199.000 2373 169s CRESS_ID 1.000 25.000 51.000 50.663875 76.000 100.000 2373 169s BIR74 248.000 1323.500 2648.000 3790.530263 4139.000 21588.000 2373 169s SID74 0.000 3.000 5.000 7.905976 10.000 44.000 2373 169s NWBIR74 1.000 289.000 844.000 1246.116483 1396.000 8027.000 2373 169s BIR79 319.000 1606.000 3108.000 4848.231062 5386.000 30757.000 2373 169s SID79 0.000 3.000 6.000 9.574419 13.000 57.000 2373 169s NWBIR79 3.000 360.000 1058.000 1602.740769 1524.000 11631.000 2373 169s dimension(s): 169s from to offset delta refsys point x/y 169s x 1 100 -84.32 0.08867 NAD27 FALSE [x] 169s y 1 50 36.59 -0.05415 NAD27 FALSE [y] 169s > plot(x, axes = TRUE) 169s > (ls = st_sf(a = 1:2, st_sfc(st_linestring(rbind(c(0.1, 0), c(1.1, 1))), st_linestring(rbind(c(0, 0.05), c(1, 0.05)))))) 169s Simple feature collection with 2 features and 1 field 169s Geometry type: LINESTRING 169s Dimension: XY 169s Bounding box: xmin: 0 ymin: 0 xmax: 1.1 ymax: 1 169s CRS: NA 169s a 169s 1 1 169s 2 2 169s c..st_sfc.st_linestring.rbind.c.0.1..0...c.1.1..1.....st_linestring.rbind.c.0..........0.05...c.1..0.05...... 169s 1 LINESTRING (0.1 0, 1.1 1) 169s 2 LINESTRING (0 0.05, 1 0.05) 169s > (grd = st_as_stars(st_bbox(ls), nx = 10, ny = 10, xlim = c(0, 1.0), ylim = c(0, 1), values = NA_real_)) 169s stars object with 2 dimensions and 1 attribute 169s attribute(s): 169s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 169s values NA NA NA NaN NA NA 100 169s dimension(s): 169s from to offset delta x/y 169s x 1 10 0 0.1 [x] 169s y 1 10 1 -0.1 [y] 169s > # the following two plots confirm that (only) the 169s > # upper-left corner is part of the grid cell (when dy is negative), leading 169s > # to a seemingly half-gridcell-shift problem: 169s > ## sf_extSoftVersion()["GDAL"] 169s > plot(st_rasterize(ls, grd), axes = TRUE, reset = FALSE) # ALL_TOUCHED=FALSE; 169s > plot(ls, add = TRUE, col = "red") 169s > plot(st_rasterize(ls, grd, options = "ALL_TOUCHED=TRUE"), axes = TRUE, reset = FALSE) 169s > plot(ls, add = TRUE, col = "red") 169s > # add lines to existing 0 values, summing values in case of multiple lines: 169s > (grd = st_as_stars(st_bbox(ls), nx = 10, ny = 10, xlim = c(0, 1.0), ylim = c(0, 1), values = 0)) 169s stars object with 2 dimensions and 1 attribute 169s attribute(s): 169s Min. 1st Qu. Median Mean 3rd Qu. Max. 169s values 0 0 0 0 0 0 169s dimension(s): 169s from to offset delta x/y 169s x 1 10 0 0.1 [x] 169s y 1 10 1 -0.1 [y] 169s > r = st_rasterize(ls, grd, options = c("MERGE_ALG=ADD", "ALL_TOUCHED=TRUE")) 169s > plot(r, axes = TRUE, reset = FALSE) 169s > plot(ls, add = TRUE, col = "red") 169s > 169s BEGIN TEST rectilinear.R 169s 169s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 169s Copyright (C) 2025 The R Foundation for Statistical Computing 169s Platform: x86_64-pc-linux-gnu 169s 169s R is free software and comes with ABSOLUTELY NO WARRANTY. 169s You are welcome to redistribute it under certain conditions. 169s Type 'license()' or 'licence()' for distribution details. 169s 169s R is a collaborative project with many contributors. 169s Type 'contributors()' for more information and 169s 'citation()' on how to cite R or R packages in publications. 169s 169s Type 'demo()' for some demos, 'help()' for on-line help, or 169s 'help.start()' for an HTML browser interface to help. 169s Type 'q()' to quit R. 169s 169s > suppressPackageStartupMessages(library(stars)) 170s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 170s > x = read_stars(tif) 170s > (xx = x[,c(1:347,349),c(1:350,352),]) # rectilinear: one-but-last row & col missing 170s stars object with 3 dimensions and 1 attribute 170s attribute(s): 170s Min. 1st Qu. Median Mean 3rd Qu. Max. 170s L7_ETMs.tif 1 54 69 68.9915 86 255 170s dimension(s): 170s from to refsys point 170s x 1 348 SIRGAS 2000 / UTM zone 25S FALSE 170s y 1 351 SIRGAS 2000 / UTM zone 25S FALSE 170s band 1 6 NA NA 170s values x/y 170s x [288790.5,288819),...,[298708.5,298737) [x] 170s y [9120747,9120718),...,[9110743,9110715) [y] 170s band NULL 170s > image(xx) # chooses useRaster itself 170s > # see also tidy.R for a ggplot example, leaving out the row. 170s > 170s > m = matrix(1:16, 4, 4) 170s > x = 1:4 170s > y = 2:5 170s > (st = st_as_stars(list(m = m), dimensions = st_dimensions(x = x, y = y))) 170s stars object with 2 dimensions and 1 attribute 170s attribute(s): 170s Min. 1st Qu. Median Mean 3rd Qu. Max. 170s m 1 4.75 8.5 8.5 12.25 16 170s dimension(s): 170s from to offset delta point x/y 170s x 1 4 1 1 FALSE [x] 170s y 1 4 2 1 FALSE [y] 170s > st = st_set_dimensions(st, 1, values = c(1,2,3,4,6)) 170s > st = st_set_dimensions(st, 2, values = c(2,3,4,5,8)) 170s > try(st_set_dimensions(st, 2, values = c(2,3,4,5,8,20))) # one too many 170s > 170s > # $<-.stars: 170s > st$foo = st$m * 2 170s > st 170s stars object with 2 dimensions and 2 attributes 170s attribute(s): 170s Error in st_set_dimensions(st, 2, values = c(2, 3, 4, 5, 8, 20)) : 170s length of values ( 6 ) does not match length of dimension 2 ( 4 ) 170s Min. 1st Qu. Median Mean 3rd Qu. Max. 170s m 1 4.75 8.5 8.5 12.25 16 170s foo 2 9.50 17.0 17.0 24.50 32 170s dimension(s): 170s from to point values x/y 170s x 1 4 FALSE [1,2),...,[4,6) [x] 170s y 1 4 FALSE [2,3),...,[5,8) [y] 170s > 170s > # st_as_sf: 170s > 170s > if (utils::packageVersion("sf") > "0.7.2") { 170s + plot(st_as_sf(st, as_points = FALSE), axes = TRUE) 170s + } 170s > 170s > image(st, text_values = TRUE, axes = TRUE) 170s > 170s BEGIN TEST redimension.R 170s 170s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 170s Copyright (C) 2025 The R Foundation for Statistical Computing 170s Platform: x86_64-pc-linux-gnu 170s 170s R is free software and comes with ABSOLUTELY NO WARRANTY. 170s You are welcome to redistribute it under certain conditions. 170s Type 'license()' or 'licence()' for distribution details. 170s 170s R is a collaborative project with many contributors. 170s Type 'contributors()' for more information and 170s 'citation()' on how to cite R or R packages in publications. 170s 170s Type 'demo()' for some demos, 'help()' for on-line help, or 170s 'help.start()' for an HTML browser interface to help. 170s Type 'q()' to quit R. 170s 170s > suppressPackageStartupMessages(library(stars)) 170s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 170s > r = read_stars(list(a = c(tif,tif), b = c(tif, tif)), proxy = TRUE) 170s > (xx = st_redimension(r, along = list(foo = 1:4))) 170s stars_proxy object with 1 attribute in 4 file(s): 170s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 170s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 170s [4] "[...]/L7_ETMs.tif" 170s 170s dimension(s): 170s from to offset delta refsys point x/y 170s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 170s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 170s band 1 6 NA NA NA NA 170s foo 1 4 1 1 NA NA 170s > (rr = c(xx, xx)) 170s stars_proxy object with 2 attributes in 8 file(s): 170s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 170s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 170s [4] "[...]/L7_ETMs.tif" 170s 170s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 170s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 170s [4] "[...]/L7_ETMs.tif" 170s 170s dimension(s): 170s from to offset delta refsys point x/y 170s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 170s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 170s band 1 6 NA NA NA NA 170s foo 1 4 1 1 NA NA 170s > # st_as_stars(rr) 170s > (rrr = st_redimension(rr, along = list(bar = as.Date(c("2001-01-01", "2002-01-01"))))) 170s stars_proxy object with 1 attribute in 8 file(s): 170s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif.a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 170s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 170s [4] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 170s [7] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 170s 170s dimension(s): 170s from to offset delta refsys point x/y 171s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 171s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 171s band 1 6 NA NA NA NA 171s foo 1 4 1 1 NA NA 171s bar 1 2 2001-01-01 365 days Date NA 171s > (rr = c(a = xx, b = xx)) 171s stars_proxy object with 2 attributes in 8 file(s): 171s $a 171s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 171s [4] "[...]/L7_ETMs.tif" 171s 171s $b 171s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 171s [4] "[...]/L7_ETMs.tif" 171s 171s dimension(s): 171s from to offset delta refsys point x/y 171s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 171s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 171s band 1 6 NA NA NA NA 171s foo 1 4 1 1 NA NA 171s > # st_as_stars(rr) 171s > (rrr = st_redimension(rr, along = list(bar = as.Date(c("2001-01-01", "2002-01-01"))))) 171s stars_proxy object with 1 attribute in 8 file(s): 171s $a.b 171s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 171s [4] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 171s [7] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 171s 171s dimension(s): 171s from to offset delta refsys point x/y 171s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 171s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 171s band 1 6 NA NA NA NA 171s foo 1 4 1 1 NA NA 171s bar 1 2 2001-01-01 365 days Date NA 171s > 171s BEGIN TEST sf.R 171s 171s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 171s Copyright (C) 2025 The R Foundation for Statistical Computing 171s Platform: x86_64-pc-linux-gnu 171s 171s R is free software and comes with ABSOLUTELY NO WARRANTY. 171s You are welcome to redistribute it under certain conditions. 171s Type 'license()' or 'licence()' for distribution details. 171s 171s R is a collaborative project with many contributors. 171s Type 'contributors()' for more information and 171s 'citation()' on how to cite R or R packages in publications. 171s 171s Type 'demo()' for some demos, 'help()' for on-line help, or 171s 'help.start()' for an HTML browser interface to help. 171s Type 'q()' to quit R. 171s 171s > suppressPackageStartupMessages(library(stars)) 171s > library(sf) 171s > #jp2 = system.file("jp2/B01.jp2", package = "stars") 171s > #(x = read_stars(jp2, options = c("OVERVIEW_LEVEL=3"))) 171s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 171s > #(x = read_stars(tif, options = c("OVERVIEW_LEVEL=3"))) # FIXME: breaks on windows 171s > (x = read_stars(tif)[,1:20,1:20]) 171s stars object with 3 dimensions and 1 attribute 171s attribute(s): 171s Min. 1st Qu. Median Mean 3rd Qu. Max. 171s L7_ETMs.tif 17 44 58 58.19667 70 130 171s dimension(s): 171s from to offset delta refsys point x/y 171s x 1 20 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 171s y 1 20 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 171s band 1 6 NA NA NA NA 171s > # names(x) = "L7_ETM" 171s > 171s > # library(abind) 171s > # x = adrop(x) 171s > image(x) 171s > (sfc = st_as_sfc(x, as_points = FALSE)) 171s Geometry set for 400 features 171s Geometry type: POLYGON 171s Dimension: XY 171s Bounding box: xmin: 288776.3 ymin: 9120191 xmax: 289346.3 ymax: 9120761 171s Projected CRS: SIRGAS 2000 / UTM zone 25S 171s First 5 geometries: 171s POLYGON ((288776.3 9120761, 288804.8 9120761, 2... 171s POLYGON ((288804.8 9120761, 288833.3 9120761, 2... 171s POLYGON ((288833.3 9120761, 288861.8 9120761, 2... 171s POLYGON ((288861.8 9120761, 288890.3 9120761, 2... 171s > plot(sfc, add =TRUE) 171s POLYGON ((288890.3 9120761, 288918.8 9120761, 2... 171s > (sfc = st_as_sfc(x, as_points = TRUE)) 171s Geometry set for 400 features 171s Geometry type: POINT 171s Dimension: XY 171s Bounding box: xmin: 288790.5 ymin: 9120205 xmax: 289332 ymax: 9120747 171s Projected CRS: SIRGAS 2000 / UTM zone 25S 171s First 5 geometries: 171s POINT (288790.5 9120747) 171s POINT (288819 9120747) 171s POINT (288847.5 9120747) 171s POINT (288876 9120747) 171s > plot(sfc, add = TRUE) 171s > 171s > sf = st_as_sf(x, as_points = FALSE) 171s POINT (288904.5 9120747) 171s > plot(sf, border = NA) 171s > sf = st_as_sf(x[,,,1], as_points = FALSE, merge = TRUE) 171s > plot(sf, border = NA) 171s Warning message: 171s In CPL_polygonize(file, mask_name, "GTiff", "Memory", "foo", options, : 171s GDAL Message 1: DeprecationWarning: 'Memory' driver is deprecated since GDAL 3.11. Use 'MEM' onwards. Further messages of this type will be suppressed. 171s > 171s > sfc1 <- st_as_sfc(x, as_points = TRUE, use_cpp = TRUE, na.rm = FALSE) 171s > sfc2 <- st_as_sfc(x, as_points = TRUE, use_cpp = FALSE) 171s > identical(sfc1, sfc2) 171s [1] TRUE 171s > 171s > sfc1 <- st_as_sfc(x, as_points = FALSE, use_cpp = TRUE, na.rm = FALSE) 171s > sfc2 <- st_as_sfc(x, as_points = FALSE, use_cpp = FALSE) 171s > identical(sfc1, sfc2) 171s [1] TRUE 171s > 171s > # sf -> stars -> sf 171s > x = st_sfc(st_point(0:1), st_point(1:2), st_point(2:3)) 171s > m = matrix(1:9,3) 171s > colnames(m) = c("a", "b", "c") 171s > foo = st_sf(m, geom = x) 171s > x = st_as_stars(foo) 171s > c(x) 171s stars object with 1 dimensions and 3 attributes 171s attribute(s): 171s Min. 1st Qu. Median Mean 3rd Qu. Max. 171s a 1 1.5 2 2 2.5 3 171s b 4 4.5 5 5 5.5 6 171s c 7 7.5 8 8 8.5 9 171s dimension(s): 171s from to point values 171s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 171s > st_redimension(x) 171s stars object with 2 dimensions and 1 attribute 171s attribute(s): 171s Min. 1st Qu. Median Mean 3rd Qu. Max. 171s a.b.c 1 3 5 5 7 9 171s dimension(s): 171s from to point values 171s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 171s new_dim 1 3 NA a, b, c 171s > c(x, x) 171s stars object with 1 dimensions and 6 attributes 171s attribute(s): 171s Min. 1st Qu. Median Mean 3rd Qu. Max. 171s a 1 1.5 2 2 2.5 3 171s b 4 4.5 5 5 5.5 6 171s c 7 7.5 8 8 8.5 9 171s a.1 1 1.5 2 2 2.5 3 171s b.1 4 4.5 5 5 5.5 6 171s c.1 7 7.5 8 8 8.5 9 171s dimension(s): 171s from to point values 171s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 171s > (y = st_redimension(x, along = list(time = as.Date("2017-11-27") + 0:2))) 171s stars object with 2 dimensions and 1 attribute 171s attribute(s): 171s Min. 1st Qu. Median Mean 3rd Qu. Max. 171s a.b.c 1 3 5 5 7 9 171s dimension(s): 171s from to offset delta refsys point values 171s geom 1 3 NA NA NA TRUE POINT (0 1),...,POINT (2 3) 171s time 1 3 2017-11-27 1 days Date NA NULL 171s > st_as_sf(y) 171s Simple feature collection with 3 features and 3 fields 171s Geometry type: POINT 171s Dimension: XY 171s Bounding box: xmin: 0 ymin: 1 xmax: 2 ymax: 3 171s CRS: NA 171s 2017-11-27 2017-11-28 2017-11-29 geom 171s 1 1 4 7 POINT (0 1) 171s 2 2 5 8 POINT (1 2) 171s 3 3 6 9 POINT (2 3) 171s > st_as_sf(st_as_stars(foo)) 171s Simple feature collection with 3 features and 3 fields 171s Geometry type: POINT 171s Dimension: XY 171s Bounding box: xmin: 0 ymin: 1 xmax: 2 ymax: 3 171s CRS: NA 171s a b c geom 171s 1 1 4 7 POINT (0 1) 171s 2 2 5 8 POINT (1 2) 171s 3 3 6 9 POINT (2 3) 171s > 171s > c(x,x,along=1) # NEEDS FIXING! 171s stars object with 1 dimensions and 3 attributes 171s attribute(s): 171s Min. 1st Qu. Median Mean 3rd Qu. Max. 171s a 1 1.25 2 2 2.75 3 171s b 4 4.25 5 5 5.75 6 171s c 7 7.25 8 8 8.75 9 171s dimension(s): 171s from to point values 171s geom 1 6 TRUE POINT (0 1),...,POINT (2 3) 171s > # st_as_stars.sfc 171s > st_as_stars(st_geometry(st_as_sf(y)), nx = 10, ny = 10, as_points = FALSE) 171s stars object with 2 dimensions and 1 attribute 171s attribute(s): 171s Min. 1st Qu. Median Mean 3rd Qu. Max. 171s values 0 0 0 0.06 0 1 171s dimension(s): 171s from to offset delta x/y 171s x 1 10 0 0.2 [x] 171s y 1 10 3 -0.2 [y] 171s > 171s BEGIN TEST sp.R 171s 171s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 171s Copyright (C) 2025 The R Foundation for Statistical Computing 171s Platform: x86_64-pc-linux-gnu 171s 171s R is free software and comes with ABSOLUTELY NO WARRANTY. 171s You are welcome to redistribute it under certain conditions. 171s Type 'license()' or 'licence()' for distribution details. 171s 171s R is a collaborative project with many contributors. 171s Type 'contributors()' for more information and 171s 'citation()' on how to cite R or R packages in publications. 171s 171s Type 'demo()' for some demos, 'help()' for on-line help, or 171s 'help.start()' for an HTML browser interface to help. 171s Type 'q()' to quit R. 171s 171s > options(rgdal_show_exportToProj4_warnings = "none") 171s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) { 171s + demo(meuse) 171s + # remove +init=xxx 171s + meuse@proj4string = CRS( 171s + "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs" 171s + ) 171s + meuse.grid@proj4string = CRS( 171s + "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs" 171s + ) 171s + 171s + suppressPackageStartupMessages(library(stars)) 171s + (m = st_as_stars(meuse)) 171s + (gr = st_as_stars(meuse.grid)) 171s + 171s + m2 = as(m, "Spatial") 171s + summary(m2) 171s + gr2 = as(gr, "Spatial") 171s + summary(gr2) 171s + 171s + all.equal(meuse, m2, check.attributes = FALSE) 171s + fullgrid(meuse.grid) = TRUE 171s + all.equal(meuse.grid, gr2, check.attributes = FALSE) 171s + 171s + #all.equal(meuse, m2) 171s + #all.equal(meuse.grid, gr2) 171s + } 172s 172s 172s demo(meuse) 172s ---- ~~~~~ 172s 172s > require(sp) 172s 172s > crs = CRS("EPSG:28992") 172s 172s > data("meuse") 172s 172s > coordinates(meuse) <- ~x+y 172s 172s > proj4string(meuse) <- crs 172s 172s > data("meuse.grid") 172s 172s > coordinates(meuse.grid) <- ~x+y 172s 172s > gridded(meuse.grid) <- TRUE 172s 172s > proj4string(meuse.grid) <- crs 172s 172s > data("meuse.riv") 172s 172s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 172s 172s > proj4string(meuse.riv) <- crs 172s 172s > data("meuse.area") 172s 172s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 172s 172s > proj4string(meuse.area) <- crs 172s [1] TRUE 172s > 172s BEGIN TEST spacetime.R 172s 172s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 172s Copyright (C) 2025 The R Foundation for Statistical Computing 172s Platform: x86_64-pc-linux-gnu 172s 172s R is free software and comes with ABSOLUTELY NO WARRANTY. 172s You are welcome to redistribute it under certain conditions. 172s Type 'license()' or 'licence()' for distribution details. 172s 172s R is a collaborative project with many contributors. 172s Type 'contributors()' for more information and 172s 'citation()' on how to cite R or R packages in publications. 172s 172s Type 'demo()' for some demos, 'help()' for on-line help, or 172s 'help.start()' for an HTML browser interface to help. 172s Type 'q()' to quit R. 172s 172s > suppressPackageStartupMessages(library(stars)) 173s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 173s + set.seed(1331) 173s + Sys.setenv(TZ="UTC") 173s + example(STFDF) 173s + 173s + x = st_as_stars(stfdf) 173s + xx = as(x, "STFDF") 173s + 173s + # as.xts.stars: 173s + library(xts) 173s + xts = as.xts(x) 173s + st_as_stars(xts) 173s + st_as_stars(xts, dimensions = st_dimensions(x)) 173s + 173s + library(sp) 173s + pts = SpatialPoints(rbind(c(0,0), c(0,1), c(1,0), c(1,1))) 173s + gridded(pts) = TRUE 173s + 173s + tm = xts(1:10, as.Date("2010-01-01")+0:9) 173s + stfdf = STFDF(pts, tm, data.frame(foo = seq_len(length(pts) * length(tm)))) 173s + x = st_as_stars(stfdf) 173s + xx = as(x, "STFDF") 173s + 173s + x = st_as_stars(as(stfdf, "STSDF")) 173s + } 173s 173s STFDF> sp = cbind(x = c(0,0,1), y = c(0,1,1)) 173s 173s STFDF> row.names(sp) = paste("point", 1:nrow(sp), sep="") 173s 173s STFDF> library(sp) 173s 173s STFDF> sp = SpatialPoints(sp) 173s 173s STFDF> time = as.POSIXct("2010-08-05")+3600*(10:13) 173s 173s STFDF> m = c(10,20,30) # means for each of the 3 point locations 173s 173s STFDF> mydata = rnorm(length(sp)*length(time),mean=rep(m, 4)) 173s 173s STFDF> IDs = paste("ID",1:length(mydata)) 173s 173s STFDF> mydata = data.frame(values = signif(mydata,3), ID=IDs) 173s 173s STFDF> stfdf = STFDF(sp, time, mydata) 173s 173s STFDF> stfdf 173s An object of class "STFDF" 173s Slot "data": 173s values ID 173s 1 9.38 ID 1 173s 2 21.10 ID 2 173s 3 29.80 ID 3 173s 4 11.50 ID 4 173s 5 19.80 ID 5 173s 6 31.20 ID 6 173s 7 10.40 ID 7 173s 8 20.50 ID 8 173s 9 29.80 ID 9 173s 10 10.30 ID 10 173s 11 21.40 ID 11 173s 12 29.40 ID 12 173s 173s Slot "sp": 173s SpatialPoints: 173s x y 173s point1 0 0 173s point2 0 1 173s point3 1 1 173s Coordinate Reference System (CRS) arguments: NA 173s 173s Slot "time": 173s timeIndex 173s 2010-08-05 10:00:00 1 173s 2010-08-05 11:00:00 2 173s 2010-08-05 12:00:00 3 173s 2010-08-05 13:00:00 4 173s 173s Slot "endTime": 173s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 173s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 173s 173s 173s STFDF> stfdf[1:2,] 173s An object of class "STFDF" 173s Slot "data": 173s values ID 173s 1 9.38 ID 1 173s 2 21.10 ID 2 173s 3 11.50 ID 4 173s 4 19.80 ID 5 173s 5 10.40 ID 7 173s 6 20.50 ID 8 173s 7 10.30 ID 10 173s 8 21.40 ID 11 173s 173s Slot "sp": 173s SpatialPoints: 173s x y 173s point1 0 0 173s point2 0 1 173s Coordinate Reference System (CRS) arguments: NA 173s 173s Slot "time": 173s timeIndex 173s 2010-08-05 10:00:00 1 173s 2010-08-05 11:00:00 2 173s 2010-08-05 12:00:00 3 173s 2010-08-05 13:00:00 4 173s 173s Slot "endTime": 173s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 173s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 173s 173s 173s STFDF> stfdf[,1:2] 173s An object of class "STFDF" 173s Slot "data": 173s values ID 173s 1 9.38 ID 1 173s 2 21.10 ID 2 173s 3 29.80 ID 3 173s 4 11.50 ID 4 173s 5 19.80 ID 5 173s 6 31.20 ID 6 173s 173s Slot "sp": 173s SpatialPoints: 173s x y 173s point1 0 0 173s point2 0 1 173s point3 1 1 173s Coordinate Reference System (CRS) arguments: NA 173s 173s Slot "time": 173s timeIndex 173s 2010-08-05 10:00:00 1 173s 2010-08-05 11:00:00 2 173s 173s Slot "endTime": 173s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 173s 173s 173s STFDF> stfdf[,,2] 173s An object of class "STFDF" 173s Slot "data": 173s ID 173s 1 ID 1 173s 2 ID 2 173s 3 ID 3 173s 4 ID 4 173s 5 ID 5 173s 6 ID 6 173s 7 ID 7 173s 8 ID 8 173s 9 ID 9 173s 10 ID 10 173s 11 ID 11 173s 12 ID 12 173s 173s Slot "sp": 173s SpatialPoints: 173s x y 173s point1 0 0 173s point2 0 1 173s point3 1 1 173s Coordinate Reference System (CRS) arguments: NA 173s 173s Slot "time": 173s timeIndex 173s 2010-08-05 10:00:00 1 173s 2010-08-05 11:00:00 2 173s 2010-08-05 12:00:00 3 173s 2010-08-05 13:00:00 4 173s 173s Slot "endTime": 173s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 173s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 173s 173s 173s STFDF> stfdf[,,"values"] 173s An object of class "STFDF" 173s Slot "data": 173s values 173s 1 9.38 173s 2 21.10 173s 3 29.80 173s 4 11.50 173s 5 19.80 173s 6 31.20 173s 7 10.40 173s 8 20.50 173s 9 29.80 173s 10 10.30 173s 11 21.40 173s 12 29.40 173s 173s Slot "sp": 173s SpatialPoints: 173s x y 173s point1 0 0 173s point2 0 1 173s point3 1 1 173s Coordinate Reference System (CRS) arguments: NA 173s 173s Slot "time": 173s timeIndex 173s 2010-08-05 10:00:00 1 173s 2010-08-05 11:00:00 2 173s 2010-08-05 12:00:00 3 173s 2010-08-05 13:00:00 4 173s 173s Slot "endTime": 173s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 173s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 173s 173s 173s STFDF> stfdf[1,] 173s values ID timeIndex 173s 2010-08-05 10:00:00 9.38 ID 1 1 173s 2010-08-05 11:00:00 11.50 ID 4 2 173s 2010-08-05 12:00:00 10.40 ID 7 3 173s 2010-08-05 13:00:00 10.30 ID 10 4 173s 173s STFDF> stfdf[,2] 173s coordinates values ID 173s 1 (0, 0) 11.5 ID 4 173s 2 (0, 1) 19.8 ID 5 173s 3 (1, 1) 31.2 ID 6 173s 173s STFDF> as(stfdf[,,1], "xts") 173s point1 point2 point3 173s 2010-08-05 10:00:00 9.38 21.1 29.8 173s 2010-08-05 11:00:00 11.50 19.8 31.2 173s 2010-08-05 12:00:00 10.40 20.5 29.8 173s 2010-08-05 13:00:00 10.30 21.4 29.4 173s 173s STFDF> as(stfdf[,,2], "xts") 173s point1 point2 point3 173s 2010-08-05 10:00:00 ID 1 ID 2 ID 3 173s 2010-08-05 11:00:00 ID 4 ID 5 ID 6 173s 2010-08-05 12:00:00 ID 7 ID 8 ID 9 173s 2010-08-05 13:00:00 ID 10 ID 11 ID 12 173s 173s STFDF> # examples for [[, [[<-, $ and $<- 173s STFDF> stfdf[[1]] 173s [1] 9.38 21.10 29.80 11.50 19.80 31.20 10.40 20.50 29.80 10.30 21.40 29.40 173s 173s STFDF> stfdf[["values"]] 173s [1] 9.38 21.10 29.80 11.50 19.80 31.20 10.40 20.50 29.80 10.30 21.40 29.40 173s 173s STFDF> stfdf[["newVal"]] <- rnorm(12) 173s 173s STFDF> stfdf$ID 173s [1] "ID 1" "ID 2" "ID 3" "ID 4" "ID 5" "ID 6" "ID 7" "ID 8" "ID 9" 173s [10] "ID 10" "ID 11" "ID 12" 173s 173s STFDF> stfdf$ID = paste("OldIDs", 1:12, sep="") 173s 173s STFDF> stfdf$NewID = paste("NewIDs", 12:1, sep="") 173s 173s STFDF> stfdf 173s An object of class "STFDF" 173s Slot "data": 173s values ID newVal NewID 173s 1 9.38 OldIDs1 -0.3125824 NewIDs12 173s 2 21.10 OldIDs2 -1.0536246 NewIDs11 173s 3 29.80 OldIDs3 -0.7188880 NewIDs10 173s 4 11.50 OldIDs4 -1.0525404 NewIDs9 173s 5 19.80 OldIDs5 -0.8441413 NewIDs8 173s 6 31.20 OldIDs6 1.1420848 NewIDs7 173s 7 10.40 OldIDs7 1.9479070 NewIDs6 173s 8 20.50 OldIDs8 -0.4512836 NewIDs5 173s 9 29.80 OldIDs9 0.6695716 NewIDs4 173s 10 10.30 OldIDs10 0.1269003 NewIDs3 173s 11 21.40 OldIDs11 -0.7273297 NewIDs2 173s 12 29.40 OldIDs12 -0.8151803 NewIDs1 173s 173s Slot "sp": 173s SpatialPoints: 173s x y 173s point1 0 0 173s point2 0 1 173s point3 1 1 173s Coordinate Reference System (CRS) arguments: NA 173s 173s Slot "time": 173s timeIndex 173s 2010-08-05 10:00:00 1 173s 2010-08-05 11:00:00 2 173s 2010-08-05 12:00:00 3 173s 2010-08-05 13:00:00 4 173s 173s Slot "endTime": 173s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 173s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 173s 173s 173s STFDF> x = stfdf[stfdf[1:2,],] 173s 173s STFDF> all.equal(x, stfdf[1:2,]) 173s [1] TRUE 173s 173s STFDF> all.equal(stfdf, stfdf[stfdf,]) # converts character to factor... 173s [1] TRUE 173s Loading required package: zoo 173s 173s Attaching package: 'zoo' 173s 173s The following objects are masked from 'package:base': 173s 173s as.Date, as.Date.numeric 173s 173s only the first attribute will used; maybe use merge() first? 173s > 173s BEGIN TEST spatstat.R 173s 173s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 173s Copyright (C) 2025 The R Foundation for Statistical Computing 173s Platform: x86_64-pc-linux-gnu 173s 173s R is free software and comes with ABSOLUTELY NO WARRANTY. 173s You are welcome to redistribute it under certain conditions. 173s Type 'license()' or 'licence()' for distribution details. 173s 173s R is a collaborative project with many contributors. 173s Type 'contributors()' for more information and 173s 'citation()' on how to cite R or R packages in publications. 173s 173s Type 'demo()' for some demos, 'help()' for on-line help, or 173s 'help.start()' for an HTML browser interface to help. 173s Type 'q()' to quit R. 173s 173s > suppressPackageStartupMessages(library(sf)) 174s > 174s > library(stars) 174s Loading required package: abind 174s > if (suppressPackageStartupMessages(require(spatstat.geom, quietly = TRUE))) { 174s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 174s + s = adrop(read_stars(tif)[,,,1]) > 70 174s + plot(s) 174s + m = as.owin(s) 174s + plot(m) 174s + print(table(m$m)) 174s + } 174s 174s FALSE TRUE 174s 39494 83354 174s > 174s BEGIN TEST stars.R 175s 175s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 175s Copyright (C) 2025 The R Foundation for Statistical Computing 175s Platform: x86_64-pc-linux-gnu 175s 175s R is free software and comes with ABSOLUTELY NO WARRANTY. 175s You are welcome to redistribute it under certain conditions. 175s Type 'license()' or 'licence()' for distribution details. 175s 175s R is a collaborative project with many contributors. 175s Type 'contributors()' for more information and 175s 'citation()' on how to cite R or R packages in publications. 175s 175s Type 'demo()' for some demos, 'help()' for on-line help, or 175s 'help.start()' for an HTML browser interface to help. 175s Type 'q()' to quit R. 175s 175s > Sys.setenv(TZ="UTC") 175s > suppressPackageStartupMessages(library(stars)) 175s > set.seed(13521) # runif 175s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 175s > (x_ = read_stars(c(tif,tif))) # FIXME: not what you'd expect 175s stars object with 3 dimensions and 2 attributes 175s attribute(s): 175s Min. 1st Qu. Median Mean 3rd Qu. Max. 175s L7_ETMs.tif 1 54 69 68.91242 86 255 175s L7_ETMs.tif.1 1 54 69 68.91242 86 255 175s dimension(s): 175s from to offset delta refsys point x/y 175s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 175s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 175s band 1 6 NA NA NA NA 175s > (x = read_stars(tif)) 175s stars object with 3 dimensions and 1 attribute 175s attribute(s): 175s Min. 1st Qu. Median Mean 3rd Qu. Max. 175s L7_ETMs.tif 1 54 69 68.91242 86 255 175s dimension(s): 175s from to offset delta refsys point x/y 175s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 175s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 175s band 1 6 NA NA NA NA 175s > # image(x) 175s > gdal_crs(tif) 175s Coordinate Reference System: 175s User input: PROJCS["SIRGAS 2000 / UTM zone 25S",GEOGCS["SIRGAS 2000",DATUM["Sistema_de_Referencia_Geocentrico_para_las_AmericaS_2000",SPHEROID["GRS 1980",6378137,298.257222101,AUTHORITY["EPSG","7019"]],AUTHORITY["EPSG","6674"]],PRIMEM["Greenwich",0,AUTHORITY["EPSG","8901"]],UNIT["degree",0.0174532925199433,AUTHORITY["EPSG","9122"]],AUTHORITY["EPSG","4674"]],PROJECTION["Transverse_Mercator"],PARAMETER["latitude_of_origin",0],PARAMETER["central_meridian",-33],PARAMETER["scale_factor",0.9996],PARAMETER["false_easting",500000],PARAMETER["false_northing",10000000],UNIT["metre",1,AUTHORITY["EPSG","9001"]],AXIS["Easting",EAST],AXIS["Northing",NORTH],AUTHORITY["EPSG","31985"]] 175s wkt: 175s PROJCRS["SIRGAS 2000 / UTM zone 25S", 175s BASEGEOGCRS["SIRGAS 2000", 175s DATUM["Sistema de Referencia Geocentrico para las AmericaS 2000", 175s ELLIPSOID["GRS 1980",6378137,298.257222101, 175s LENGTHUNIT["metre",1]]], 175s PRIMEM["Greenwich",0, 175s ANGLEUNIT["degree",0.0174532925199433]], 175s ID["EPSG",4674]], 175s CONVERSION["UTM zone 25S", 175s METHOD["Transverse Mercator", 175s ID["EPSG",9807]], 175s PARAMETER["Latitude of natural origin",0, 175s ANGLEUNIT["degree",0.0174532925199433], 175s ID["EPSG",8801]], 175s PARAMETER["Longitude of natural origin",-33, 175s ANGLEUNIT["degree",0.0174532925199433], 175s ID["EPSG",8802]], 175s PARAMETER["Scale factor at natural origin",0.9996, 175s SCALEUNIT["unity",1], 175s ID["EPSG",8805]], 175s PARAMETER["False easting",500000, 175s LENGTHUNIT["metre",1], 175s ID["EPSG",8806]], 175s PARAMETER["False northing",10000000, 175s LENGTHUNIT["metre",1], 175s ID["EPSG",8807]]], 175s CS[Cartesian,2], 175s AXIS["easting",east, 175s ORDER[1], 175s LENGTHUNIT["metre",1]], 175s AXIS["northing",north, 175s ORDER[2], 175s LENGTHUNIT["metre",1]], 175s ID["EPSG",31985]] 175s > plot(x) 175s > plot(x, join_zlim = FALSE) 176s > x %>% st_set_dimensions(names = c('a', 'b', 'c')) 176s stars object with 3 dimensions and 1 attribute 176s attribute(s): 176s Min. 1st Qu. Median Mean 3rd Qu. Max. 176s L7_ETMs.tif 1 54 69 68.91242 86 255 176s dimension(s): 176s from to offset delta refsys point x/y 176s a 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 176s b 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 176s c 1 6 NA NA NA NA 176s > st_get_dimension_values(x, 3) 176s [1] 1 2 3 4 5 6 176s > 176s > (x1 = st_set_dimensions(x, "band", values = c(1,2,3,4,5,7), names = "band_number", point = TRUE)) 176s stars object with 3 dimensions and 1 attribute 176s attribute(s): 176s Min. 1st Qu. Median Mean 3rd Qu. Max. 176s L7_ETMs.tif 1 54 69 68.91242 86 255 176s dimension(s): 176s from to offset delta refsys point values x/y 176s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 176s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 176s band_number 1 6 NA NA NA TRUE 1,...,7 176s > rbind(c(0.45,0.515), c(0.525,0.605), c(0.63,0.69), c(0.775,0.90), c(1.55,1.75), c(2.08,2.35)) %>% 176s + units::set_units(um) -> bw # units::set_units(µm) -> bw 176s > # set bandwidth midpoint: 176s > (x2 = st_set_dimensions(x, "band", values = 0.5 * (bw[,1]+bw[,2]), 176s + names = "bandwidth_midpoint", point = TRUE)) 176s stars object with 3 dimensions and 1 attribute 176s attribute(s): 176s Min. 1st Qu. Median Mean 3rd Qu. Max. 176s L7_ETMs.tif 1 54 69 68.91242 86 255 176s dimension(s): 176s from to offset delta refsys point 176s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 176s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 176s bandwidth_midpoint 1 6 NA NA udunits TRUE 176s values x/y 176s x NULL [x] 176s y NULL [y] 176s bandwidth_midpoint 0.4825 [um],...,2.215 [um] 176s > # set bandwidth intervals: 176s > (x3 = st_set_dimensions(x, "band", values = make_intervals(bw), names = "bandwidth")) 176s stars object with 3 dimensions and 1 attribute 176s attribute(s): 176s Min. 1st Qu. Median Mean 3rd Qu. Max. 176s L7_ETMs.tif 1 54 69 68.91242 86 255 176s dimension(s): 176s from to offset delta refsys point 176s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 176s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 176s bandwidth 1 6 NA NA udunits NA 176s values x/y 176s x NULL [x] 176s y NULL [y] 176s bandwidth [0.45,0.515) [um],...,[2.08,2.35) [um] 176s > 176s > x + x 176s stars object with 3 dimensions and 1 attribute 176s attribute(s): 176s Min. 1st Qu. Median Mean 3rd Qu. Max. 176s L7_ETMs.tif 2 108 138 137.8248 172 510 176s dimension(s): 176s from to offset delta refsys point x/y 176s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 176s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 176s band 1 6 NA NA NA NA 176s > x * x 176s stars object with 3 dimensions and 1 attribute 176s attribute(s): 176s Min. 1st Qu. Median Mean 3rd Qu. Max. 176s L7_ETMs.tif 1 2916 4761 5512.41 7396 65025 176s dimension(s): 176s from to offset delta refsys point x/y 176s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 176s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 176s band 1 6 NA NA NA NA 176s > x[,,,1:3] 176s stars object with 3 dimensions and 1 attribute 176s attribute(s): 176s Min. 1st Qu. Median Mean 3rd Qu. Max. 176s L7_ETMs.tif 21 58 70 70.36041 83 255 176s dimension(s): 176s from to offset delta refsys point x/y 176s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 176s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 176s band 1 3 NA NA NA NA 176s > x[,1:100,100:200,] 176s stars object with 3 dimensions and 1 attribute 176s attribute(s): 176s Min. 1st Qu. Median Mean 3rd Qu. Max. 176s L7_ETMs.tif 13 54 65 67.21531 77 252 176s dimension(s): 176s from to offset delta refsys point x/y 176s x 1 100 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 176s y 100 200 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 176s band 1 6 NA NA NA NA 176s > sqrt(x) 176s stars object with 3 dimensions and 1 attribute 176s attribute(s): 176s Min. 1st Qu. Median Mean 3rd Qu. Max. 176s L7_ETMs.tif 1 7.348469 8.306624 8.094006 9.273618 15.96872 176s dimension(s): 176s from to offset delta refsys point x/y 176s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 176s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 176s band 1 6 NA NA NA NA 176s > st_apply(x, 3, min) 176s stars object with 1 dimensions and 1 attribute 176s attribute(s): 176s Min. 1st Qu. Median Mean 3rd Qu. Max. 176s min 1 3 15 18.5 29.25 47 176s dimension(s): 176s from to 176s band 1 6 176s > st_apply(x, 1:2, max) 176s stars object with 2 dimensions and 1 attribute 176s attribute(s): 176s Min. 1st Qu. Median Mean 3rd Qu. Max. 176s max 55 85 96 99.36018 113 255 176s dimension(s): 176s from to offset delta refsys point x/y 176s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 176s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 176s > st_apply(x, 1:2, range) 177s stars object with 3 dimensions and 1 attribute 177s attribute(s): 177s Min. 1st Qu. Median Mean 3rd Qu. Max. 177s L7_ETMs.tif 1 50 71 72.43565 96 255 177s dimension(s): 177s from to offset delta refsys point x/y 177s range 1 2 NA NA NA NA 177s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 177s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 177s > 177s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 177s > x = read_stars(geomatrix) 177s > y = st_transform(x, st_crs(4326)) 177s > st_coordinates(x)[1:2,] 177s x y 177s 1 1841000 1144000 177s 2 1841002 1143995 177s > 177s > nc = system.file("nc/tos_O1_2001-2002.nc", package = "stars") 177s > if (nc != "" && require(PCICt, quietly = TRUE)) { 177s + print(x <- read_stars(nc)) 177s + print(st_bbox(x)) 177s + s = st_as_stars(st_bbox(x)) # inside = NA 177s + print(st_bbox(s)) 177s + s = st_as_stars(st_bbox(x), inside = TRUE) 177s + print(st_bbox(s)) 177s + s = st_as_stars(st_bbox(x), inside = FALSE) 177s + print(st_bbox(s)) 177s + (s = st_as_stars(st_bbox(x), dy = 1)) 177s + print(st_bbox(s)) 177s + print(identical(st_as_stars(st_bbox(x), dx = 1), st_as_stars(st_bbox(x), dy = 1))) 177s + s = st_as_stars(st_bbox(x), dx = 10) 177s + print(st_bbox(s)) 177s + s = st_as_stars(st_bbox(x), dx = 20) 177s + print(st_bbox(s)) 177s + x1 = x 177s + st_crs(x1) = "OGC:CRS84" 177s + print(identical(st_as_stars(st_bbox(x1), dx = 1), st_as_stars(st_bbox(x1), dx = units::set_units(1, degree)))) 177s + 177s + df = as.data.frame(x) 177s + if (require(units, quietly = TRUE)) 177s + print(units::drop_units(x)) 177s + 177s + print(dimnames(x)) 177s + dimnames(x) <- letters[1:3] 177s + print(dimnames(x)) 177s + } # PCICt 177s > 177s > st_as_stars() 177s stars object with 2 dimensions and 1 attribute 177s attribute(s): 177s Min. 1st Qu. Median Mean 3rd Qu. Max. 177s values 0 0 0 0 0 0 177s dimension(s): 177s from to offset delta refsys x/y 177s x 1 360 -180 1 WGS 84 (CRS84) [x] 177s y 1 180 90 -1 WGS 84 (CRS84) [y] 177s > 177s > # multiple sub-datasets: 177s > nc_red = system.file("nc/reduced.nc", package = "stars") 177s > red = read_stars(nc_red) 177s sst, anom, err, ice, 177s > red 177s stars object with 4 dimensions and 4 attributes 177s attribute(s): 177s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 177s sst [degree_Celsius] -1.80 -0.03 13.655 12.9940841 24.8125 32.97 4448 177s anom [degree_Celsius] -10.16 -0.58 -0.080 -0.1855812 0.2100 2.99 4448 177s err [degree_Celsius] 0.11 0.16 0.270 0.2626872 0.3200 0.84 4448 177s ice [percent] 0.01 0.47 0.920 0.7178118 0.9600 1.00 13266 177s dimension(s): 177s from to offset delta refsys x/y 177s x 1 180 -1 2 NA [x] 177s y 1 90 90 -2 NA [y] 177s zlev 1 1 0 [m] NA NA 177s time 1 1 1981-12-31 UTC NA POSIXct 177s > plot(red) 177s > 177s > x = st_xy2sfc(read_stars(tif)[,1:10,1:10,], as_points = FALSE) 177s > st_bbox(x) 177s xmin ymin xmax ymax 177s 288776.3 9120475.8 289061.3 9120760.8 177s > x = read_stars(tif) 177s > merge(split(x, "band")) 177s stars object with 3 dimensions and 1 attribute 177s attribute(s): 177s Min. 1st Qu. Median Mean 3rd Qu. Max. 177s X1.X2.X3.X4.X5.X6 1 54 69 68.91242 86 255 177s dimension(s): 178s from to offset delta refsys point values 178s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 178s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 178s attributes 1 6 NA NA NA NA X1,...,X6 178s x/y 178s x [x] 178s y [y] 178s attributes 178s > 178s > read_stars(c(tif,tif)) # merges as attributes 178s stars object with 3 dimensions and 2 attributes 178s attribute(s): 178s Min. 1st Qu. Median Mean 3rd Qu. Max. 178s L7_ETMs.tif 1 54 69 68.91242 86 255 178s L7_ETMs.tif.1 1 54 69 68.91242 86 255 178s dimension(s): 178s from to offset delta refsys point x/y 178s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 178s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 178s band 1 6 NA NA NA NA 178s > read_stars(c(tif,tif), along = "sensor") 178s stars object with 4 dimensions and 1 attribute 178s attribute(s), summary of first 1e+05 cells: 178s Min. 1st Qu. Median Mean 3rd Qu. Max. 178s L7_ETMs.tif 47 65 76 77.3419 87 255 178s dimension(s): 178s from to offset delta refsys point x/y 178s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 178s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 178s band 1 6 NA NA NA NA 178s sensor 1 2 NA NA NA NA 178s > read_stars(c(tif,tif), along = 4) 178s stars object with 4 dimensions and 1 attribute 178s attribute(s), summary of first 1e+05 cells: 178s Min. 1st Qu. Median Mean 3rd Qu. Max. 178s L7_ETMs.tif 47 65 76 77.3419 87 255 178s dimension(s): 178s from to offset delta refsys point x/y 178s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 178s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 178s band 1 6 NA NA NA NA 178s new_dim 1 2 NA NA NA NA 178s > read_stars(c(tif,tif), along = "band") 178s stars object with 3 dimensions and 1 attribute 178s attribute(s), summary of first 1e+05 cells: 178s Min. 1st Qu. Median Mean 3rd Qu. Max. 178s L7_ETMs.tif 47 65 76 77.3419 87 255 178s dimension(s): 178s from to offset delta refsys point x/y 178s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 178s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 178s band 1 12 NA NA NA NA 178s > read_stars(c(tif,tif), along = 3) 178s stars object with 3 dimensions and 1 attribute 178s attribute(s), summary of first 1e+05 cells: 178s Min. 1st Qu. Median Mean 3rd Qu. Max. 178s L7_ETMs.tif 47 65 76 77.3419 87 255 178s dimension(s): 178s from to offset delta refsys point x/y 178s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 178s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 178s band 1 12 NA NA NA NA 178s > 178s > # cut: 178s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 178s > x = read_stars(tif) 178s > cut(x, c(0, 50, 100, 255)) 178s stars object with 3 dimensions and 1 attribute 178s attribute(s): 178s L7_ETMs.tif 178s (0,50] :156060 178s (50,100] :503764 178s (100,255]: 77264 178s dimension(s): 178s from to offset delta refsys point x/y 178s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 178s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 178s band 1 6 NA NA NA NA 178s > cut(x[,,,1,drop=TRUE], c(0, 50, 100, 255)) 178s stars object with 2 dimensions and 1 attribute 178s attribute(s): 178s L7_ETMs.tif 178s (0,50] : 1 178s (50,100] :117134 178s (100,255]: 5713 178s dimension(s): 178s from to offset delta refsys point x/y 178s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 178s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 178s > plot(cut(x[,,,1,drop=TRUE], c(0, 50, 100, 255))) 178s > 178s > st_bbox(st_dimensions(x)) 178s xmin ymin xmax ymax 178s 288776.3 9110728.8 298722.8 9120760.8 178s > x[x < 0] = NA 178s > x[is.na(x)] = 0 178s > 178s > # c: 178s > f = system.file("netcdf/avhrr-only-v2.19810902.nc", package = "starsdata") 178s > if (FALSE && f != "") { 178s + files = c("avhrr-only-v2.19810901.nc", 178s + "avhrr-only-v2.19810902.nc", 178s + "avhrr-only-v2.19810903.nc", 178s + "avhrr-only-v2.19810904.nc", 178s + "avhrr-only-v2.19810905.nc", 178s + "avhrr-only-v2.19810906.nc", 178s + "avhrr-only-v2.19810907.nc", 178s + "avhrr-only-v2.19810908.nc", 178s + "avhrr-only-v2.19810909.nc") 178s + l = list() 178s + for (f in files) { 178s + from = system.file(paste0("netcdf/", f), package = "starsdata") 178s + l[[f]] = read_stars(from, sub = c("sst", "anom")) 178s + } 178s + ret = do.call(c, l) 178s + print(ret) 178s + ret = adrop(c(l[[1]], l[[2]], l[[3]], along = list(times = as.Date("1981-09-01") + 0:2))) 178s + print(ret) 178s + #ret = adrop(adrop(c(l[[1]], l[[2]], l[[3]], along = "times"))) 178s + #print(ret) 178s + } 178s > 178s > st_dimensions(list(matrix(1, 4, 4))) # st_dimensions.default 178s from to point values 178s X1 1 1 FALSE 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 178s > 178s > if (FALSE && require("starsdata", quietly = TRUE)) { 178s + # curvilinear: 178s + s5p = system.file( 178s + "sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", 178s + package = "starsdata") 178s + print(s5p) 178s + lat_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/latitude") 178s + lon_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/longitude") 178s + nit_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column") 178s + lat = read_stars(lat_ds) 178s + lon = read_stars(lon_ds) 178s + nit = read_stars(nit_ds) 178s + nit[[1]][nit[[1]] > 9e+36] = NA 178s + 178s + ll = setNames(c(lon, lat), c("x", "y")) 178s + nit.c = st_as_stars(nit, curvilinear = ll) 178s + print(nit.c) 178s + 178s + s5p = system.file( 178s + "sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", 178s + package = "starsdata") 178s + nit.c2 = read_stars(s5p, 178s + sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 178s + curvilinear = c("//PRODUCT/latitude", "//PRODUCT/longitude")) 178s + print(all.equal(nit.c, nit.c2)) 178s + } 178s > 178s BEGIN TEST subset.R 178s 178s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 178s Copyright (C) 2025 The R Foundation for Statistical Computing 178s Platform: x86_64-pc-linux-gnu 178s 178s R is free software and comes with ABSOLUTELY NO WARRANTY. 178s You are welcome to redistribute it under certain conditions. 178s Type 'license()' or 'licence()' for distribution details. 178s 178s R is a collaborative project with many contributors. 178s Type 'contributors()' for more information and 178s 'citation()' on how to cite R or R packages in publications. 178s 178s Type 'demo()' for some demos, 'help()' for on-line help, or 178s 'help.start()' for an HTML browser interface to help. 178s Type 'q()' to quit R. 178s 178s > suppressPackageStartupMessages(library(stars)) 179s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 179s > x = read_stars(tif) 179s > y = st_set_dimensions(x, "band", point = TRUE) 179s > y[,1:10, 1:10, c(1,4,3,2)] 179s stars object with 3 dimensions and 1 attribute 179s attribute(s): 179s Min. 1st Qu. Median Mean 3rd Qu. Max. 179s L7_ETMs.tif 25 45 57 56.535 64 97 179s dimension(s): 179s from to offset delta refsys point values x/y 179s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 179s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 179s band 1 4 NA NA NA TRUE 1,...,2 179s > y = st_set_dimensions(x, "band", point = NA) 179s > y[,1:10, 1:10, c(1,4,3,2)] 179s stars object with 3 dimensions and 1 attribute 179s attribute(s): 179s Min. 1st Qu. Median Mean 3rd Qu. Max. 179s L7_ETMs.tif 25 45 57 56.535 64 97 179s dimension(s): 179s from to offset delta refsys point values x/y 179s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 179s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 179s band 1 4 NA NA NA NA [1,2),...,[2,3) 179s > y = st_set_dimensions(x, "band", point = FALSE) 179s > y[,1:10, 1:10, c(1,4,3,2)] 179s stars object with 3 dimensions and 1 attribute 179s attribute(s): 179s Min. 1st Qu. Median Mean 3rd Qu. Max. 179s L7_ETMs.tif 25 45 57 56.535 64 97 179s dimension(s): 179s from to offset delta refsys point values x/y 179s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 179s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 179s band 1 4 NA NA NA FALSE [1,2),...,[2,3) 179s > y = st_set_dimensions(x, "band", values = letters[1:6]) 179s > y[,1:10, 1:10, c(1,4,3,2)] 179s stars object with 3 dimensions and 1 attribute 179s attribute(s): 179s Min. 1st Qu. Median Mean 3rd Qu. Max. 179s L7_ETMs.tif 25 45 57 56.535 64 97 179s dimension(s): 179s from to offset delta refsys point values x/y 179s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 179s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 179s band 1 4 NA NA NA NA a,...,b 179s > y = st_set_dimensions(x, "band", values = letters[1:6], point = NA) 179s > y[,1:10, 1:10, c(1,4,3,2)] 179s stars object with 3 dimensions and 1 attribute 179s attribute(s): 179s Min. 1st Qu. Median Mean 3rd Qu. Max. 179s L7_ETMs.tif 25 45 57 56.535 64 97 179s dimension(s): 179s from to offset delta refsys point values x/y 179s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 179s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 179s band 1 4 NA NA NA NA a,...,b 179s > y = st_set_dimensions(x, "band", values = letters[1:6], point = TRUE) 179s > y[,1:10, 1:10, c(1,4,3,2)] 179s stars object with 3 dimensions and 1 attribute 179s attribute(s): 179s Min. 1st Qu. Median Mean 3rd Qu. Max. 179s L7_ETMs.tif 25 45 57 56.535 64 97 179s dimension(s): 179s from to offset delta refsys point values x/y 179s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 179s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 179s band 1 4 NA NA NA TRUE a,...,b 179s > 179s BEGIN TEST testthat.R 179s 179s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 179s Copyright (C) 2025 The R Foundation for Statistical Computing 179s Platform: x86_64-pc-linux-gnu 179s 179s R is free software and comes with ABSOLUTELY NO WARRANTY. 179s You are welcome to redistribute it under certain conditions. 179s Type 'license()' or 'licence()' for distribution details. 179s 179s R is a collaborative project with many contributors. 179s Type 'contributors()' for more information and 179s 'citation()' on how to cite R or R packages in publications. 179s 179s Type 'demo()' for some demos, 'help()' for on-line help, or 179s 'help.start()' for an HTML browser interface to help. 179s Type 'q()' to quit R. 179s 179s > ## load dependencies 179s > library(testthat) 179s > suppressPackageStartupMessages(library(stars)) 179s > 179s > ## test package 179s > test_check("stars") 184s [ FAIL 0 | WARN 0 | SKIP 5 | PASS 69 ] 184s 184s == Skipped tests (5) =========================================================== 184s * On CRAN (4): 'test-OpenStreetMap.R:2:3', 'test-ncdf.R:1:1', 184s 'test-ncproxy.R:1:1', 'test-rectilinear.R:89:3' 184s * {cubble} is not installed (1): 'test-cubble.R:2:3' 184s 184s [ FAIL 0 | WARN 0 | SKIP 5 | PASS 69 ] 184s > 184s BEGIN TEST tidy.R 184s 184s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 184s Copyright (C) 2025 The R Foundation for Statistical Computing 184s Platform: x86_64-pc-linux-gnu 184s 184s R is free software and comes with ABSOLUTELY NO WARRANTY. 184s You are welcome to redistribute it under certain conditions. 184s Type 'license()' or 'licence()' for distribution details. 184s 184s R is a collaborative project with many contributors. 184s Type 'contributors()' for more information and 184s 'citation()' on how to cite R or R packages in publications. 184s 184s Type 'demo()' for some demos, 'help()' for on-line help, or 184s 'help.start()' for an HTML browser interface to help. 184s Type 'q()' to quit R. 184s 184s > suppressPackageStartupMessages(library(stars)) 185s > 185s > if (require(dplyr, quietly = TRUE)) { 185s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 185s + x <- read_stars(tif) 185s + (y <- x %>% select(L7_ETMs.tif)) 185s + (y <- x %>% filter(band > 2)) 185s + (z <- x %>% mutate(foo = 2* L7_ETMs.tif)) 185s + x %>% pull(L7_ETMs.tif) %>% class() 185s + x %>% filter(x > 289900) 185s + x %>% slice("x", 50:100) 185s + 185s + suppressPackageStartupMessages(library(ggplot2)) 185s + ggplot() + geom_stars(data = x) + coord_equal() + facet_wrap(~band) 185s + ggplot() + geom_stars(data = x[,c(1:50,52:100),c(1:45, 50:60)]) + 185s + coord_equal() 185s + ggplot() + geom_stars(data = x[,1:10,1:10,1:2], sf = TRUE) + facet_wrap(~band) 185s + 185s + 185s + # see https://github.com/r-spatial/stars/issues/539 : 185s + x <- read_stars(system.file("tif/L7_ETMs.tif", package = "stars")) 185s + y <- transmute(x, L7_ETMs.tif = units::set_units(L7_ETMs.tif, degree_C)) # same as x but with units 185s + 185s + x - slice(x, 'band', 1) # runs as expected, recycling the second object 185s + try(y - slice(x, 'band', 1)) # fails as expected because x is unitless 185s + try(x - slice(y, 'band', 1)) # fails as expected 185s + y - slice(y, 'band', 1) # runs as expected 185s + } 185s 185s Attaching package: 'dplyr' 185s 185s The following objects are masked from 'package:stats': 185s 185s filter, lag 185s 185s The following objects are masked from 'package:base': 185s 185s intersect, setdiff, setequal, union 185s 185s Error in Ops.units(X[[i]], ...) : 185s both operands of the expression should be "units" objects 185s Error in Ops.units(X[[i]], ...) : 185s both operands of the expression should be "units" objects 185s stars object with 3 dimensions and 1 attribute 185s attribute(s): 186s Min. 1st Qu. Median Mean 3rd Qu. Max. 186s L7_ETMs.tif [degree_Celsius] -184 -19 -8 -10.2353 0 131 186s dimension(s): 186s from to offset delta refsys point x/y 186s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 186s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 186s band 1 6 NA NA NA NA 186s > 186s BEGIN TEST transform.R 186s 186s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 186s Copyright (C) 2025 The R Foundation for Statistical Computing 186s Platform: x86_64-pc-linux-gnu 186s 186s R is free software and comes with ABSOLUTELY NO WARRANTY. 186s You are welcome to redistribute it under certain conditions. 186s Type 'license()' or 'licence()' for distribution details. 186s 186s R is a collaborative project with many contributors. 186s Type 'contributors()' for more information and 186s 'citation()' on how to cite R or R packages in publications. 186s 186s Type 'demo()' for some demos, 'help()' for on-line help, or 186s 'help.start()' for an HTML browser interface to help. 186s Type 'q()' to quit R. 186s 186s > suppressPackageStartupMessages(library(stars)) 186s > #suppressPackageStartupMessages(library(lwgeom)) 186s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 186s > (x = read_stars(geomatrix)) 186s stars object with 2 dimensions and 1 attribute 186s attribute(s): 186s Min. 1st Qu. Median Mean 3rd Qu. Max. 186s geomatrix.tif 74 107 123 126.765 132 255 186s dimension(s): 186s from to offset delta refsys point x/y 186s x 1 20 1841002 1.5 WGS 84 / UTM zone 11N TRUE [x] 186s y 1 20 1144003 -1.5 WGS 84 / UTM zone 11N TRUE [y] 186s sheared raster with parameters: -5 -5 186s > new = st_crs(4326) 186s > y = st_transform(x, new) 186s > plot(st_transform(st_as_sfc(st_bbox(x)), new), col = NA, border = 'red') 186s > plot(st_as_sfc(y, as_points=FALSE), col = NA, border = 'green', axes = TRUE, add = TRUE) 186s > image(y, add = TRUE) 186s > plot(st_as_sfc(y, as_points=TRUE), pch=3, cex=.5, col = 'blue', add = TRUE) 186s > plot(st_transform(st_as_sfc(x, as_points=FALSE), new), add = TRUE) 186s > 186s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 186s > x = read_stars(tif)[,1:10,1:10,1:3] 186s > x_ = st_transform(x, st_crs(4326)) 186s > ## IGNORE_RDIFF_BEGIN 186s > if (require(lwgeom, quietly = TRUE)) { 186s + x__ = st_transform_proj(x, st_crs(4326)$proj4string) 186s + st_crs(x_) = st_crs(x__) 186s + print(all.equal(x_,x__)) 186s + 186s + # x__ = st_transform(x, x_) #now in st_warp 186s + # all.equal(x_, x__) 186s + 186s + x = st_xy2sfc(x, as_points = FALSE) 186s + (x_ = st_transform(x, st_crs(4326))) 186s + (x__ = st_transform_proj(x, st_crs(4326))) 186s + print(all.equal(x_,x__,check.attributes = FALSE)) 186s + } 186s Linking to liblwgeom 3.0.0beta1 r16016, GEOS 3.13.0, PROJ 9.5.1 186s 186s Attaching package: 'lwgeom' 186s 186s The following object is masked from 'package:sf': 186s 186s st_perimeter 186s 186s [1] TRUE 186s Warning messages: 186s 1: In fun(libname, pkgname) : 186s GEOS versions differ: lwgeom has 3.13.0 sf has 3.14.1 186s 2: In fun(libname, pkgname) : 186s PROJ versions differ: lwgeom has 9.5.1 sf has 9.7.0 186s [1] TRUE 186s > ## IGNORE_RDIFF_END 186s > 186s > # nothing to transform: now errs: 186s > try(st_transform(st_as_stars(list(m = matrix(1,10,10))), st_crs(4326))) 186s Error in st_transform.stars(st_as_stars(list(m = matrix(1, 10, 10))), : 186s !is.na(st_crs(x)) is not TRUE 186s > try(st_transform_proj(st_as_stars(list(m = matrix(1,10,10))), st_crs(4326))) 186s Error in st_transform_proj.stars(st_as_stars(list(m = matrix(1, 10, 10))), : 186s !is.na(st_crs(x)) is not TRUE 186s > 186s BEGIN TEST warp.R 186s 186s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 186s Copyright (C) 2025 The R Foundation for Statistical Computing 186s Platform: x86_64-pc-linux-gnu 186s 186s R is free software and comes with ABSOLUTELY NO WARRANTY. 186s You are welcome to redistribute it under certain conditions. 186s Type 'license()' or 'licence()' for distribution details. 186s 186s R is a collaborative project with many contributors. 186s Type 'contributors()' for more information and 186s 'citation()' on how to cite R or R packages in publications. 186s 186s Type 'demo()' for some demos, 'help()' for on-line help, or 186s 'help.start()' for an HTML browser interface to help. 186s Type 'q()' to quit R. 186s 186s > suppressPackageStartupMessages(library(stars)) 187s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 187s > x = read_stars(geomatrix) 187s > # can stars reproduce what gdal does, by default? 187s > x2 = st_warp(x, use_gdal = TRUE, no_data_value = -9999) 187s > y = st_warp(x, x2) 187s > if (interactive()) { plot(x2, breaks = "equal", axes=TRUE) } 187s > if (interactive()) { plot(y, breaks = "equal", axes=TRUE) } 187s > names(x2) = names(y) 187s > all.equal(x2, y) # yes? 187s [1] TRUE 187s > 187s > # does gdal reproduce with stars template object? 187s > (x2 = setNames(st_warp(x, y, use_gdal = TRUE, no_data_value=-1), "file.tif")) 187s stars object with 2 dimensions and 1 attribute 187s attribute(s): 187s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 187s file.tif 74 115 123 126.4289 132 255 224 187s dimension(s): 187s from to offset delta refsys point x/y 187s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N FALSE [x] 187s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N FALSE [y] 187s > 187s > # does gdal reproduce what stars does, default cell size? 187s > (x2 = st_warp(x, crs = st_crs(x), use_gdal = FALSE)) 187s stars object with 2 dimensions and 1 attribute 187s attribute(s): 187s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 187s geomatrix.tif 74 115 123 126.4289 132 255 224 187s dimension(s): 187s from to offset delta refsys x/y 187s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N [x] 187s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N [y] 187s > (y = setNames(st_warp(x, x2, use_gdal = TRUE, debug = FALSE, no_data_value=-1), "file.tif")) 187s stars object with 2 dimensions and 1 attribute 187s attribute(s): 187s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 187s file.tif 74 115 123 126.4289 132 255 224 187s dimension(s): 187s from to offset delta refsys point x/y 187s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N FALSE [x] 187s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N FALSE [y] 187s > 187s > # try with multiple bands: 187s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 187s > (x1 = read_stars(tif)) 187s stars object with 3 dimensions and 1 attribute 187s attribute(s): 187s Min. 1st Qu. Median Mean 3rd Qu. Max. 187s L7_ETMs.tif 1 54 69 68.91242 86 255 187s dimension(s): 187s from to offset delta refsys point x/y 187s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 187s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 187s band 1 6 NA NA NA NA 187s > tifcp = tempfile(fileext = ".tif") 187s > file.copy(tif, tifcp) 187s [1] TRUE 187s > x1p = read_stars(tifcp, proxy = TRUE) 187s > st_dimensions(x1p) 187s from to offset delta refsys point x/y 187s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 187s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 187s band 1 6 NA NA NA NA 187s > (x1a = st_warp(x1, crs = st_crs(4326))) 187s stars object with 3 dimensions and 1 attribute 187s attribute(s): 187s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 187s L7_ETMs.tif 1 54 69 68.93072 86 255 8778 187s dimension(s): 187s from to offset delta refsys x/y 187s x 1 350 -34.92 0.0002592 WGS 84 [x] 187s y 1 352 -7.95 -0.0002592 WGS 84 [y] 187s band 1 6 NA NA NA 187s > (x1b = setNames(st_warp(x1, x1p, use_gdal = TRUE, no_data_value=-1), "file.tif")) 187s stars object with 3 dimensions and 1 attribute 187s attribute(s): 187s Min. 1st Qu. Median Mean 3rd Qu. Max. 187s file.tif 1 54 69 68.91242 86 255 187s dimension(s): 187s from to offset delta refsys point x/y 187s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 187s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 187s band 1 6 NA NA NA NA 187s > 187s > # does gdal reproduce what stars does? Smaller grid: 187s > x2 = st_warp(x, crs = st_crs(x), use_gdal = FALSE, cellsize = 3) 187s > # x2 = x2[,2:43,2:43] 187s > if (interactive()) { plot(x2, breaks = "equal", axes=TRUE, reset = FALSE) } 187s > if (interactive()) { plot(st_as_sfc(st_bbox(x2)), add = TRUE, col = NA, border = 'red') } 187s > ### doesn't work: FIXME: check with more recent GDAL: 187s > (y = setNames(st_warp(x, x2, use_gdal = TRUE, debug = FALSE, no_data_value=-1), "file.tif")) 187s stars object with 2 dimensions and 1 attribute 187s attribute(s): 187s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 187s file.tif 74 107 123 126.6584 132 255 727 187s dimension(s): 187s from to offset delta refsys point x/y 187s x 1 44 1840902 3 WGS 84 / UTM zone 11N FALSE [x] 187s y 1 44 1144003 -3 WGS 84 / UTM zone 11N FALSE [y] 187s > if (interactive()) { plot(y, breaks = "equal") } 187s > names(x2) = names(y) 187s > # isTRUE(all.equal(x2, y, check.attributes=FALSE)) 187s > m = mean(as.vector(x2[[1]]==y[[1]]), na.rm = TRUE) 187s > u = unique(as.vector(x2[[1]]-y[[1]])) 187s > 187s > g = st_as_stars() 187s > attr(g, "dimensions")$x$offset = 0 187s > g$values = as.vector(t(matrix(seq_len(prod(dim(g))), 180, 360))) 187s > if (interactive()) { plot(g, axes=TRUE) } 187s > a = st_warp(g, st_as_stars(), use_gdal=FALSE) 187s > b = st_warp(g, st_as_stars(), use_gdal=TRUE, no_data_value = -1) 187s > all.equal(a, b, check.attributes = FALSE) 187s [1] TRUE 187s > 187s BEGIN TEST write.R 187s 187s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 187s Copyright (C) 2025 The R Foundation for Statistical Computing 187s Platform: x86_64-pc-linux-gnu 187s 187s R is free software and comes with ABSOLUTELY NO WARRANTY. 187s You are welcome to redistribute it under certain conditions. 187s Type 'license()' or 'licence()' for distribution details. 187s 187s R is a collaborative project with many contributors. 187s Type 'contributors()' for more information and 187s 'citation()' on how to cite R or R packages in publications. 187s 187s Type 'demo()' for some demos, 'help()' for on-line help, or 187s 'help.start()' for an HTML browser interface to help. 187s Type 'q()' to quit R. 187s 187s > suppressPackageStartupMessages(library(stars)) 188s > 188s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 188s > (x = read_stars(tif)) 188s stars object with 3 dimensions and 1 attribute 188s attribute(s): 188s Min. 1st Qu. Median Mean 3rd Qu. Max. 188s L7_ETMs.tif 1 54 69 68.91242 86 255 188s dimension(s): 188s from to offset delta refsys point x/y 188s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 188s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 188s band 1 6 NA NA NA NA 188s > 188s > # write stars object: 188s > write_stars(x, tempfile(), driver = "GTiff") 188s > 188s > # write stars_proxy object: 188s > (x = read_stars(tif, proxy = TRUE)) 188s stars_proxy object with 1 attribute in 1 file(s): 188s $L7_ETMs.tif 188s [1] "[...]/L7_ETMs.tif" 188s 188s dimension(s): 188s from to offset delta refsys point x/y 188s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 188s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 188s band 1 6 NA NA NA NA 188s > write_stars(x, tempfile(), driver = "GTiff") 188s 188s > 188s autopkgtest [17:46:19]: test run-unit-test: -----------------------] 189s autopkgtest [17:46:20]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 189s run-unit-test PASS 189s autopkgtest [17:46:20]: test pkg-r-autopkgtest: preparing testbed 208s Creating nova instance adt-resolute-i386-r-cran-stars-20260130-174310-juju-7f2275-prod-proposed-migration-environment-20-f32be705-1318-4af5-b1be-84e680e5ab0c from image adt/ubuntu-resolute-amd64-server-20260130.img (UUID afba56f8-6ab4-44eb-9e07-036bcbd7054f)... 279s autopkgtest [17:47:50]: testbed dpkg architecture: amd64 280s autopkgtest [17:47:51]: testbed apt version: 3.1.14 280s autopkgtest [17:47:51]: @@@@@@@@@@@@@@@@@@@@ test bed setup 280s autopkgtest [17:47:51]: testbed release detected to be: resolute 281s autopkgtest [17:47:52]: updating testbed package index (apt update) 281s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 281s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 281s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 281s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 281s Get:5 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(0.17+2.6-4ubuntu1) ... 286s Preparing to unpack .../3cpio_0.13.1-1ubuntu1_amd64.deb ... 286s Unpacking 3cpio (0.13.1-1ubuntu1) over (0.12.0-1ubuntu1) ... 286s Setting up 3cpio (0.13.1-1ubuntu1) ... 286s Setting up libsqlite3-0:amd64 (3.46.1-9) ... 286s Setting up inetutils-telnet (2:2.7-2ubuntu1) ... 286s Setting up bzip2 (1.0.8-6build2) ... 286s Setting up rng-tools-debian (2.6build1) ... 286s Setting up telnet (0.17+2.7-2ubuntu1) ... 286s Processing triggers for man-db (2.13.1-1) ... 287s Processing triggers for libc-bin (2.42-2ubuntu4) ... 287s autopkgtest [17:47:58]: upgrading testbed (apt dist-upgrade and autopurge) 287s Reading package lists... 288s Building dependency tree... 288s Reading state information... 288s Calculating upgrade... 288s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 288s Reading package lists... 288s Building dependency tree... 288s Reading state information... 288s Solving dependencies... 288s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 288s autopkgtest [17:47:59]: rebooting testbed after setup commands that affected boot 319s Reading package lists... 319s Building dependency tree... 319s Reading state information... 319s Solving dependencies... 319s The following NEW packages will be installed: 319s build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu 319s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 319s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-15 319s g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-15 319s gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu gdal-data gdal-plugins gfortran 319s gfortran-15 gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu 319s icu-devtools javascript-common libabsl20260107 libaec0 libaom3 319s libarmadillo15 libarpack2t64 libasan8 libavif16 libblas-dev libblas3 319s libblosc1 libbz2-dev libcairo2 libcc1-0 libcfitsio10t64 libdatrie1 libdav1d7 319s libde265-0 libdeflate-dev libdeflate0 libfontconfig1 libfreexl1 libfyba0t64 319s libgav1-2 libgcc-15-dev libgdal38 libgeos-c1t64 libgeos3.14.1 libgeotiff5 319s libgfortran-15-dev libgfortran5 libgif7 libgomp1 libgpgmepp6t64 319s libgraphite2-3 libharfbuzz0b libhdf4-0 libhdf5-310 libhdf5-hl-310 319s libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libhwasan0 libhwy1t64 319s libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 319s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 319s libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 319s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 319s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 319s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker libjxl0.11 319s libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack-dev liblapack3 319s liblcms2-2 liblerc4 liblsan0 libltdl7 liblua5.4-0 liblzma-dev libminizip1t64 319s libmpc3 libmuparser2v5 libmysqlclient24 libncurses-dev libnetcdf22 libodbc2 319s libodbcinst2 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 319s libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 319s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 319s libpoppler147 libpq5 libproj25 libqhull-r8.0 libquadmath0 libreadline-dev 319s librttopo1 libsharpyuv0 libsm6 libsnappy1v5 libspatialite8t64 319s libstdc++-15-dev libsuperlu7 libsz2 libtcl8.6 libthai-data libthai0 libtiff6 319s libtirpc-dev libtk8.6 libtsan2 libubsan1 libudunits2-0 libudunits2-data 319s liburiparser1 libwebp7 libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 319s libxrender1 libxss1 libxt6t64 libyuv0 libzstd-dev mysql-common 319s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 319s pkg-r-autopkgtest pkgconf pkgconf-bin proj-data r-base-core r-base-dev 319s r-cran-abind r-cran-areal r-cran-askpass r-cran-base64enc r-cran-bdsmatrix 319s r-cran-brio r-cran-bslib r-cran-cachem r-cran-cairo r-cran-callr 319s r-cran-cftime r-cran-class r-cran-classint r-cran-cli r-cran-clue 319s r-cran-cluster r-cran-codetools r-cran-collapse r-cran-commonmark 319s r-cran-covr r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-deldir 319s r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 319s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fnn 319s r-cran-fontawesome r-cran-formula r-cran-fs r-cran-future 319s r-cran-future.apply r-cran-generics r-cran-ggforce r-cran-ggplot2 319s r-cran-ggthemes r-cran-globals r-cran-glue r-cran-goftest r-cran-gridextra 319s r-cran-gtable r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr 319s r-cran-intervals r-cran-isoband r-cran-jquerylib r-cran-jsonlite 319s r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice 319s r-cran-lazyeval r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lmtest 319s r-cran-lwgeom r-cran-magrittr r-cran-mapdata r-cran-maps r-cran-mass 319s r-cran-matrix r-cran-maxlik r-cran-memoise r-cran-mgcv r-cran-mime 319s r-cran-misctools r-cran-ncdfgeom r-cran-ncmeta r-cran-nlme r-cran-openssl 319s r-cran-parallelly r-cran-pbapply r-cran-pcict r-cran-pillar r-cran-pkgbuild 319s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plm r-cran-polyclip 319s r-cran-praise r-cran-processx r-cran-promises r-cran-proxy r-cran-ps 319s r-cran-purrr r-cran-r6 r-cran-randomforest r-cran-rappdirs r-cran-raster 319s r-cran-rbibutils r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen 319s r-cran-rdpack r-cran-rex r-cran-rlang r-cran-rmarkdown r-cran-rnetcdf 319s r-cran-rpart r-cran-rprojroot r-cran-s2 r-cran-sandwich r-cran-sass 319s r-cran-scales r-cran-sf r-cran-shiny r-cran-sourcetools r-cran-sp 319s r-cran-spacetime r-cran-spatstat r-cran-spatstat.data 319s r-cran-spatstat.explore r-cran-spatstat.geom r-cran-spatstat.linnet 319s r-cran-spatstat.model r-cran-spatstat.random r-cran-spatstat.sparse 319s r-cran-spatstat.univar r-cran-spatstat.utils r-cran-stars r-cran-stringi 319s r-cran-stringr r-cran-survival r-cran-sys r-cran-systemfonts r-cran-tensor 319s r-cran-terra r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 319s r-cran-tinytex r-cran-tweenr r-cran-units r-cran-utf8 r-cran-vctrs 319s r-cran-viridis r-cran-viridislite r-cran-waldo r-cran-withr r-cran-wk 319s r-cran-xfun r-cran-xtable r-cran-xts r-cran-yaml r-cran-zoo unixodbc-common 319s unzip x11-common xdg-utils zip zlib1g-dev 319s 0 upgraded, 344 newly installed, 0 to remove and 0 not upgraded. 319s Need to get 401 MB of archives. 319s After this operation, 1152 MB of additional disk space will be used. 319s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB] 320s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB] 320s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB] 320s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B] 320s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B] 320s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB] 320s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 15.2.0-12ubuntu1 [47.4 kB] 320s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-12ubuntu1 [151 kB] 320s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 15.2.0-12ubuntu1 [29.5 kB] 320s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 15.2.0-12ubuntu1 [3070 kB] 320s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 15.2.0-12ubuntu1 [1360 kB] 320s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 15.2.0-12ubuntu1 [2757 kB] 320s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 15.2.0-12ubuntu1 [1210 kB] 320s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 15.2.0-12ubuntu1 [1685 kB] 321s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 15.2.0-12ubuntu1 [153 kB] 321s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB] 321s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB] 321s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB] 321s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B] 321s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B] 321s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB] 321s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB] 322s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB] 322s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B] 322s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B] 322s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B] 322s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 dctrl-tools amd64 2.24-3build4 [104 kB] 322s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 322s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 322s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB] 322s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB] 322s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB] 322s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 322s Get:34 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 322s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 322s Get:36 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-data all 3.12.1+dfsg-1 [278 kB] 322s Get:37 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-plugins amd64 3.12.1+dfsg-1 [26.8 kB] 322s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-12ubuntu1 [939 kB] 322s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-12ubuntu1 [973 kB] 322s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [13.6 MB] 323s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-12ubuntu1 [18.1 kB] 323s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1014 B] 323s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran amd64 4:15.2.0-4ubuntu1 [1172 B] 323s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB] 323s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 javascript-common all 12+nmu1 [4828 B] 323s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libabsl20260107 amd64 20260107.0-0ubuntu2 [587 kB] 323s Get:47 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.5-1 [22.5 kB] 323s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libaom3 amd64 3.13.1-2 [1970 kB] 323s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 323s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 323s Get:51 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarpack2t64 amd64 3.9.1-6 [108 kB] 323s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsuperlu7 amd64 7.0.1+dfsg1-2 [186 kB] 323s Get:53 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarmadillo15 amd64 1:15.2.1+dfsg-2 [109 kB] 323s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdav1d7 amd64 1.5.3-1 [626 kB] 323s Get:55 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgav1-2 amd64 0.20.0-2build1 [402 kB] 323s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 323s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 323s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libyuv0 amd64 0.0.1922.20260106-1 [184 kB] 323s Get:59 http://ftpmaster.internal/ubuntu resolute/universe amd64 libavif16 amd64 1.3.0-1ubuntu3 [117 kB] 323s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas-dev amd64 3.12.1-7ubuntu1 [235 kB] 323s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libsnappy1v5 amd64 1.2.2-2 [30.8 kB] 323s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 libblosc1 amd64 1.21.5+ds-2 [35.8 kB] 323s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-dev amd64 1.0.8-6build2 [36.2 kB] 323s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 323s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB] 323s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B] 323s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 323s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 323s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcfitsio10t64 amd64 4.6.3-1 [549 kB] 323s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB] 323s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libde265-0 amd64 1.0.16-1build1 [172 kB] 323s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 323s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate-dev amd64 1.23-2 [56.8 kB] 323s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfyba0t64 amd64 4.1.1-11build2 [120 kB] 323s Get:75 http://ftpmaster.internal/ubuntu resolute/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [23.5 kB] 323s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfreexl1 amd64 2.0.0-1build3 [42.9 kB] 323s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos3.14.1 amd64 3.14.1-2 [976 kB] 323s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos-c1t64 amd64 3.14.1-2 [116 kB] 323s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 proj-data all 9.7.1-1 [7950 kB] 323s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 323s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 323s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 323s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 323s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 323s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 libproj25 amd64 9.7.1-1 [1499 kB] 323s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeotiff5 amd64 1.7.4-1 [60.2 kB] 323s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 libgif7 amd64 5.2.2-1ubuntu3 [36.0 kB] 323s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.5-1 [17.9 kB] 323s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf4-0 amd64 4.3.1-2 [318 kB] 323s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.6+repack-2 [1433 kB] 323s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-aomdec amd64 1.21.2-1 [14.2 kB] 323s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-libde265 amd64 1.21.2-1 [9978 B] 323s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif1 amd64 1.21.2-1 [544 kB] 323s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwy1t64 amd64 1.3.0-2 [768 kB] 324s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.17-1 [170 kB] 324s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 libjxl0.11 amd64 0.11.1-6ubuntu1 [1122 kB] 324s Get:97 http://ftpmaster.internal/ubuntu resolute/universe amd64 liburiparser1 amd64 0.9.8+dfsg-2 [46.8 kB] 324s Get:98 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlbase1t64 amd64 1.3.0-13 [51.7 kB] 324s Get:99 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmldom1t64 amd64 1.3.0-13 [156 kB] 324s Get:100 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlengine1t64 amd64 1.3.0-13 [74.1 kB] 324s Get:101 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmuparser2v5 amd64 2.3.4-2 [143 kB] 324s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 mysql-common all 5.8+1.1.1ubuntu2 [7002 B] 324s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 libmysqlclient24 amd64 8.4.8-0ubuntu1 [1258 kB] 324s Get:104 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.6+repack-2 [59.9 kB] 324s Get:105 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnetcdf22 amd64 1:4.9.3-1build1 [561 kB] 324s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libltdl7 amd64 2.5.4-9 [43.7 kB] 324s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbc2 amd64 2.3.14-1 [160 kB] 324s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 unixodbc-common all 2.3.14-1 [8792 B] 324s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbcinst2 amd64 2.3.14-1 [32.0 kB] 324s Get:110 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.4-1 [188 kB] 324s Get:111 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpgmepp6t64 amd64 1.24.2-3ubuntu2 [124 kB] 324s Get:112 http://ftpmaster.internal/ubuntu resolute/main amd64 libpoppler147 amd64 25.03.0-11.1 [1224 kB] 324s Get:113 http://ftpmaster.internal/ubuntu resolute/main amd64 libpq5 amd64 18.1-2 [155 kB] 324s Get:114 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-8 [197 kB] 324s Get:115 http://ftpmaster.internal/ubuntu resolute/universe amd64 librttopo1 amd64 1.1.0-4 [205 kB] 324s Get:116 http://ftpmaster.internal/ubuntu resolute/universe amd64 libspatialite8t64 amd64 5.1.0-3ubuntu1 [1927 kB] 324s Get:117 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3build2 [991 kB] 324s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgdal38 amd64 3.12.1+dfsg-1 [11.4 MB] 324s Get:119 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 324s Get:120 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.1-1 [519 kB] 324s Get:121 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 324s Get:122 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB] 324s Get:123 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB] 325s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8-dev amd64 2.1.5-4ubuntu2 [296 kB] 325s Get:125 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 325s Get:126 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 325s Get:127 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 325s Get:128 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB] 325s Get:129 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 325s Get:130 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-d3 all 3.5.17-4build1 [136 kB] 325s Get:131 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 325s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 325s Get:133 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 325s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 325s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 325s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B] 325s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 325s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB] 325s Get:139 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB] 325s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-prettify all 2015.12.04+dfsg-2 [41.3 kB] 325s Get:141 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack-dev amd64 3.12.1-7ubuntu1 [5433 kB] 325s Get:142 http://ftpmaster.internal/ubuntu resolute/main amd64 liblua5.4-0 amd64 5.4.8-1 [174 kB] 325s Get:143 http://ftpmaster.internal/ubuntu resolute/main amd64 libncurses-dev amd64 6.6+20251231-1 [389 kB] 325s Get:144 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB] 325s Get:145 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB] 325s Get:146 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB] 325s Get:147 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB] 325s Get:148 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB] 325s Get:149 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB] 325s Get:150 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB] 325s Get:151 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB] 325s Get:152 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB] 325s Get:153 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-posix3 amd64 10.46-1 [7354 B] 325s Get:154 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-dev amd64 10.46-1 [832 kB] 325s Get:155 http://ftpmaster.internal/ubuntu resolute/main amd64 libpkgconf3 amd64 1.8.1-4build1 [32.8 kB] 325s Get:156 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB] 325s Get:157 http://ftpmaster.internal/ubuntu resolute/main amd64 libpng-dev amd64 1.6.54-1 [273 kB] 325s Get:158 http://ftpmaster.internal/ubuntu resolute/main amd64 libreadline-dev amd64 8.3-3 [189 kB] 325s Get:159 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1 [16.4 kB] 325s Get:160 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1036 kB] 325s Get:161 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 325s Get:162 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 325s Get:163 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 325s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-data all 2.2.28-8 [19.3 kB] 325s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-0 amd64 2.2.28-8 [54.6 kB] 325s Get:166 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB] 325s Get:167 http://ftpmaster.internal/ubuntu resolute/main amd64 libzstd-dev amd64 1.5.7+dfsg-2 [376 kB] 325s Get:168 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 325s Get:169 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 325s Get:170 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 325s Get:171 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 325s Get:172 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc amd64 3.1.11.1+ds-4 [27.2 MB] 326s Get:173 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu2 [178 kB] 326s Get:174 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB] 326s Get:175 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 326s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB] 327s Get:177 http://ftpmaster.internal/ubuntu resolute/main amd64 liblzma-dev amd64 5.8.2-2 [179 kB] 327s Get:178 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf-bin amd64 1.8.1-4build1 [21.7 kB] 327s Get:179 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf amd64 1.8.1-4build1 [16.8 kB] 327s Get:180 http://ftpmaster.internal/ubuntu resolute/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB] 327s Get:181 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 327s Get:182 http://ftpmaster.internal/ubuntu resolute/universe amd64 pkg-r-autopkgtest all 20250812 [6158 B] 327s Get:183 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-abind all 1.4-8-1build1 [67.0 kB] 327s Get:184 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 327s Get:185 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-generics all 0.1.4-1 [84.0 kB] 327s Get:186 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 327s Get:187 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB] 327s Get:188 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 327s Get:189 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 327s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 327s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 327s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB] 327s Get:193 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 327s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fansi amd64 1.0.6-2 [626 kB] 327s Get:195 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 327s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 327s Get:197 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 327s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 327s Get:199 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 327s Get:200 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 327s Get:201 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB] 327s Get:202 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 327s Get:203 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 327s Get:204 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-e1071 amd64 1.7-17-1 [579 kB] 327s Get:205 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-kernsmooth amd64 2.23-26-1build1 [93.6 kB] 327s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-classint amd64 0.4-11+dfsg-1 [108 kB] 327s Get:207 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbi all 1.2.3-1build1 [855 kB] 327s Get:208 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.21-2 [84.4 kB] 327s Get:209 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 327s Get:210 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB] 327s Get:211 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-wk amd64 0.9.4-1 [1791 kB] 327s Get:212 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s2 amd64 1.1.9-1build1 [1815 kB] 327s Get:213 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-units amd64 0.8-7+dfsg-2 [300 kB] 327s Get:214 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sf amd64 1.0-19+dfsg-2build2 [3298 kB] 328s Get:215 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-areal all 0.1.8+dfsg-2 [1004 kB] 328s Get:216 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 328s Get:217 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 328s Get:218 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-base64enc amd64 0.1-3-3build1 [28.5 kB] 328s Get:219 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bdsmatrix amd64 1.3-7-1 [299 kB] 328s Get:220 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 328s Get:221 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 328s Get:222 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 328s Get:223 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB] 328s Get:224 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 328s Get:225 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB] 328s Get:226 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 328s Get:227 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-memoise all 2.0.1-1build1 [54.5 kB] 328s Get:228 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 328s Get:229 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 328s Get:230 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rappdirs amd64 0.3.3-1build1 [49.3 kB] 328s Get:231 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 328s Get:232 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB] 328s Get:233 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cairo amd64 1.6-2-1 [88.8 kB] 328s Get:234 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB] 328s Get:235 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 328s Get:236 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 328s Get:237 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cftime all 1.7.2-1 [918 kB] 328s Get:238 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cluster amd64 2.1.8.1-1 [579 kB] 328s Get:239 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-clue amd64 0.3-66-1 [968 kB] 328s Get:240 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-codetools all 0.2-20-1build1 [91.1 kB] 328s Get:241 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-collapse amd64 2.1.0-1 [3485 kB] 328s Get:242 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB] 328s Get:243 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lazyeval amd64 0.2.2-1build2 [146 kB] 328s Get:244 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rex all 1.2.1-1build1 [126 kB] 328s Get:245 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-curl amd64 7.0.0+dfsg-1 [202 kB] 328s Get:246 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 328s Get:247 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 328s Get:248 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 328s Get:249 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 328s Get:250 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB] 328s Get:251 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cpp11 all 0.5.3-1 [242 kB] 328s Get:252 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 328s Get:253 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 329s Get:254 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-diffobj amd64 0.3.5-1build1 [1156 kB] 329s Get:255 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 329s Get:256 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 329s Get:257 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB] 329s Get:258 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 329s Get:259 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 329s Get:260 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-globals all 0.18.0-1 [158 kB] 329s Get:261 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-listenv all 0.10.0+dfsg-1 [113 kB] 329s Get:262 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-parallelly amd64 1.42.0-1 [540 kB] 329s Get:263 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 329s Get:264 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future.apply all 1.11.3+dfsg-1 [175 kB] 329s Get:265 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 329s Get:266 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 329s Get:267 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lattice amd64 0.22-7-1 [1367 kB] 329s Get:268 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-nlme amd64 3.1.168-1 [2320 kB] 329s Get:269 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrix amd64 1.7-4-1 [4220 kB] 329s Get:270 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mgcv amd64 1.9-4-1 [3556 kB] 329s Get:271 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 329s Get:272 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 329s Get:273 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 329s Get:274 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB] 329s Get:275 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 330s Get:276 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tweenr amd64 2.0.3-1 [410 kB] 330s Get:277 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB] 330s Get:278 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-systemfonts amd64 1.2.1-1 [347 kB] 330s Get:279 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 331s Get:280 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggforce amd64 0.4.2-1 [1777 kB] 331s Get:281 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringi amd64 1.8.4-1build2 [908 kB] 331s Get:282 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 331s Get:283 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggthemes all 5.2.0-1 [760 kB] 331s Get:284 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-goftest amd64 1.2-3-1build1 [60.5 kB] 331s Get:285 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gridextra all 2.3-3build2 [1032 kB] 331s Get:286 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB] 331s Get:287 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 331s Get:288 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 331s Get:289 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 331s Get:290 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 331s Get:291 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-intervals amd64 0.15.5-1 [602 kB] 331s Get:292 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 332s Get:293 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 332s Get:294 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-zoo amd64 1.8-15-1 [1025 kB] 332s Get:295 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lmtest amd64 0.9.40-1build1 [400 kB] 332s Get:296 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lwgeom amd64 0.2-14-1 [463 kB] 332s Get:297 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-maps amd64 3.4.2.1-1 [2352 kB] 333s Get:298 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mapdata amd64 2.3.1-1 [23.5 MB] 335s Get:299 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-misctools all 0.6-28-1 [99.9 kB] 335s Get:300 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sandwich all 3.1-1-1 [1483 kB] 335s Get:301 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-maxlik all 1.5-2.2-1 [1115 kB] 335s Get:302 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-rnetcdf amd64 2.11-1-1 [242 kB] 335s Get:303 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 336s Get:304 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ncmeta all 0.4.0-1 [362 kB] 336s Get:305 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stars all 0.6-8-1 [4414 kB] 336s Get:306 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ncdfgeom all 1.1.6+dfsg-1 [4124 kB] 336s Get:307 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 336s Get:308 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pcict amd64 0.5-4.4-1 [94.4 kB] 336s Get:309 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgbuild all 1.4.8-1 [219 kB] 336s Get:310 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rprojroot all 2.1.1-1 [131 kB] 336s Get:311 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgload all 1.4.1-1 [252 kB] 336s Get:312 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rbibutils amd64 2.3-1 [1023 kB] 337s Get:313 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rdpack all 2.6.3-1 [636 kB] 337s Get:314 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plm all 2.6-7-1 [1823 kB] 337s Get:315 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-praise all 1.0.0-4build2 [20.9 kB] 337s Get:316 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-randomforest amd64 4.7-1.2-1 [216 kB] 337s Get:317 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sp amd64 1:2.2-0+dfsg-1 [1444 kB] 337s Get:318 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-terra amd64 1.8-70-1build2 [4344 kB] 337s Get:319 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-raster amd64 3.6-31-2 [3174 kB] 338s Get:320 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tinytex all 0.58-1 [148 kB] 338s Get:321 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-modernizr all 3.13.0-0.1build1 [100 kB] 338s Get:322 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xtable all 1:1.8-4-2build1 [691 kB] 338s Get:323 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 338s Get:324 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 338s Get:325 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 338s Get:326 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 338s Get:327 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-survival amd64 3.8-6-1 [8274 kB] 339s Get:328 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 339s Get:329 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xts amd64 0.14.1-1 [1198 kB] 339s Get:330 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spacetime all 1.3-3-2 [2780 kB] 339s Get:331 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.utils amd64 3.1-3-1 [387 kB] 339s Get:332 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.data all 3.1-6-1 [4153 kB] 340s Get:333 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.univar amd64 3.1-2-1 [315 kB] 340s Get:334 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.geom amd64 3.3-6-1 [3968 kB] 340s Get:335 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.random amd64 3.3-3-1 [1177 kB] 340s Get:336 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tensor all 1.5-4build1 [16.3 kB] 340s Get:337 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.sparse amd64 3.1-0-1 [221 kB] 340s Get:338 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.explore amd64 3.3-4-1 [3347 kB] 341s Get:339 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.model amd64 3.3-4-1 [3397 kB] 341s Get:340 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.linnet amd64 3.2-5-1 [1509 kB] 341s Get:341 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat amd64 3.3-1-1 [4121 kB] 341s Get:342 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-waldo all 0.6.2-1 [153 kB] 341s Get:343 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 342s Get:344 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 342s Preconfiguring packages ... 342s Fetched 401 MB in 22s (18.0 MB/s) 342s Selecting previously unselected package libisl23:amd64. 342s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124211 files and directories currently installed.) 342s Preparing to unpack .../000-libisl23_0.27-1build1_amd64.deb ... 342s Unpacking libisl23:amd64 (0.27-1build1) ... 342s Selecting previously unselected package libmpc3:amd64. 342s Preparing to unpack .../001-libmpc3_1.3.1-2_amd64.deb ... 342s Unpacking libmpc3:amd64 (1.3.1-2) ... 342s Selecting previously unselected package cpp-15-x86-64-linux-gnu. 342s Preparing to unpack .../002-cpp-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 342s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 343s Selecting previously unselected package cpp-15. 343s Preparing to unpack .../003-cpp-15_15.2.0-12ubuntu1_amd64.deb ... 343s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 343s Selecting previously unselected package cpp-x86-64-linux-gnu. 343s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 343s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 343s Selecting previously unselected package cpp. 343s Preparing to unpack .../005-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ... 343s Unpacking cpp (4:15.2.0-4ubuntu1) ... 343s Selecting previously unselected package libcc1-0:amd64. 343s Preparing to unpack .../006-libcc1-0_15.2.0-12ubuntu1_amd64.deb ... 343s Unpacking libcc1-0:amd64 (15.2.0-12ubuntu1) ... 343s Selecting previously unselected package libgomp1:amd64. 343s Preparing to unpack .../007-libgomp1_15.2.0-12ubuntu1_amd64.deb ... 343s Unpacking libgomp1:amd64 (15.2.0-12ubuntu1) ... 343s Selecting previously unselected package libitm1:amd64. 343s Preparing to unpack .../008-libitm1_15.2.0-12ubuntu1_amd64.deb ... 343s Unpacking libitm1:amd64 (15.2.0-12ubuntu1) ... 343s Selecting previously unselected package libasan8:amd64. 343s Preparing to unpack .../009-libasan8_15.2.0-12ubuntu1_amd64.deb ... 343s Unpacking libasan8:amd64 (15.2.0-12ubuntu1) ... 343s Selecting previously unselected package liblsan0:amd64. 343s Preparing to unpack .../010-liblsan0_15.2.0-12ubuntu1_amd64.deb ... 343s Unpacking liblsan0:amd64 (15.2.0-12ubuntu1) ... 343s Selecting previously unselected package libtsan2:amd64. 343s Preparing to unpack .../011-libtsan2_15.2.0-12ubuntu1_amd64.deb ... 343s Unpacking libtsan2:amd64 (15.2.0-12ubuntu1) ... 343s Selecting previously unselected package libubsan1:amd64. 343s Preparing to unpack .../012-libubsan1_15.2.0-12ubuntu1_amd64.deb ... 343s Unpacking libubsan1:amd64 (15.2.0-12ubuntu1) ... 343s Selecting previously unselected package libhwasan0:amd64. 343s Preparing to unpack .../013-libhwasan0_15.2.0-12ubuntu1_amd64.deb ... 343s Unpacking libhwasan0:amd64 (15.2.0-12ubuntu1) ... 343s Selecting previously unselected package libquadmath0:amd64. 343s Preparing to unpack .../014-libquadmath0_15.2.0-12ubuntu1_amd64.deb ... 343s Unpacking libquadmath0:amd64 (15.2.0-12ubuntu1) ... 343s Selecting previously unselected package libgcc-15-dev:amd64. 343s Preparing to unpack .../015-libgcc-15-dev_15.2.0-12ubuntu1_amd64.deb ... 343s Unpacking libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ... 343s Selecting previously unselected package gcc-15-x86-64-linux-gnu. 343s Preparing to unpack .../016-gcc-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 343s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 343s Selecting previously unselected package gcc-15. 343s Preparing to unpack .../017-gcc-15_15.2.0-12ubuntu1_amd64.deb ... 343s Unpacking gcc-15 (15.2.0-12ubuntu1) ... 343s Selecting previously unselected package gcc-x86-64-linux-gnu. 343s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 343s Unpacking gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 343s Selecting previously unselected package gcc. 343s Preparing to unpack .../019-gcc_4%3a15.2.0-4ubuntu1_amd64.deb ... 343s Unpacking gcc (4:15.2.0-4ubuntu1) ... 343s Selecting previously unselected package libstdc++-15-dev:amd64. 343s Preparing to unpack .../020-libstdc++-15-dev_15.2.0-12ubuntu1_amd64.deb ... 343s Unpacking libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ... 343s Selecting previously unselected package g++-15-x86-64-linux-gnu. 343s Preparing to unpack .../021-g++-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 343s Unpacking g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 343s Selecting previously unselected package g++-15. 343s Preparing to unpack .../022-g++-15_15.2.0-12ubuntu1_amd64.deb ... 343s Unpacking g++-15 (15.2.0-12ubuntu1) ... 343s Selecting previously unselected package g++-x86-64-linux-gnu. 344s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 344s Unpacking g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 344s Selecting previously unselected package g++. 344s Preparing to unpack .../024-g++_4%3a15.2.0-4ubuntu1_amd64.deb ... 344s Unpacking g++ (4:15.2.0-4ubuntu1) ... 344s Selecting previously unselected package build-essential. 344s Preparing to unpack .../025-build-essential_12.12ubuntu2_amd64.deb ... 344s Unpacking build-essential (12.12ubuntu2) ... 344s Selecting previously unselected package dctrl-tools. 344s Preparing to unpack .../026-dctrl-tools_2.24-3build4_amd64.deb ... 344s Unpacking dctrl-tools (2.24-3build4) ... 344s Selecting previously unselected package fonts-dejavu-mono. 344s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8build1_all.deb ... 344s Unpacking fonts-dejavu-mono (2.37-8build1) ... 344s Selecting previously unselected package fonts-dejavu-core. 344s Preparing to unpack .../028-fonts-dejavu-core_2.37-8build1_all.deb ... 344s Unpacking fonts-dejavu-core (2.37-8build1) ... 344s Selecting previously unselected package fontconfig-config. 344s Preparing to unpack .../029-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ... 344s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 344s Selecting previously unselected package libfontconfig1:amd64. 344s Preparing to unpack .../030-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ... 344s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ... 344s Selecting previously unselected package fontconfig. 344s Preparing to unpack .../031-fontconfig_2.17.1-3ubuntu1_amd64.deb ... 344s Unpacking fontconfig (2.17.1-3ubuntu1) ... 344s Selecting previously unselected package fonts-font-awesome. 344s Preparing to unpack .../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ... 344s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 344s Selecting previously unselected package fonts-glyphicons-halflings. 344s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 344s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 344s Selecting previously unselected package fonts-mathjax. 344s Preparing to unpack .../034-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ... 344s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ... 344s Selecting previously unselected package gdal-data. 344s Preparing to unpack .../035-gdal-data_3.12.1+dfsg-1_all.deb ... 344s Unpacking gdal-data (3.12.1+dfsg-1) ... 344s Selecting previously unselected package gdal-plugins:amd64. 344s Preparing to unpack .../036-gdal-plugins_3.12.1+dfsg-1_amd64.deb ... 344s Unpacking gdal-plugins:amd64 (3.12.1+dfsg-1) ... 344s Selecting previously unselected package libgfortran5:amd64. 344s Preparing to unpack .../037-libgfortran5_15.2.0-12ubuntu1_amd64.deb ... 344s Unpacking libgfortran5:amd64 (15.2.0-12ubuntu1) ... 344s Selecting previously unselected package libgfortran-15-dev:amd64. 344s Preparing to unpack .../038-libgfortran-15-dev_15.2.0-12ubuntu1_amd64.deb ... 344s Unpacking libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ... 344s Selecting previously unselected package gfortran-15-x86-64-linux-gnu. 344s Preparing to unpack .../039-gfortran-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 344s Unpacking gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 344s Selecting previously unselected package gfortran-15. 344s Preparing to unpack .../040-gfortran-15_15.2.0-12ubuntu1_amd64.deb ... 344s Unpacking gfortran-15 (15.2.0-12ubuntu1) ... 344s Selecting previously unselected package gfortran-x86-64-linux-gnu. 344s Preparing to unpack .../041-gfortran-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 344s Unpacking gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 344s Selecting previously unselected package gfortran. 344s Preparing to unpack .../042-gfortran_4%3a15.2.0-4ubuntu1_amd64.deb ... 344s Unpacking gfortran (4:15.2.0-4ubuntu1) ... 344s Selecting previously unselected package icu-devtools. 344s Preparing to unpack .../043-icu-devtools_78.2-1ubuntu1_amd64.deb ... 344s Unpacking icu-devtools (78.2-1ubuntu1) ... 344s Selecting previously unselected package javascript-common. 344s Preparing to unpack .../044-javascript-common_12+nmu1_all.deb ... 344s Unpacking javascript-common (12+nmu1) ... 344s Selecting previously unselected package libabsl20260107:amd64. 344s Preparing to unpack .../045-libabsl20260107_20260107.0-0ubuntu2_amd64.deb ... 344s Unpacking libabsl20260107:amd64 (20260107.0-0ubuntu2) ... 344s Selecting previously unselected package libaec0:amd64. 344s Preparing to unpack .../046-libaec0_1.1.5-1_amd64.deb ... 344s Unpacking libaec0:amd64 (1.1.5-1) ... 344s Selecting previously unselected package libaom3:amd64. 344s Preparing to unpack .../047-libaom3_3.13.1-2_amd64.deb ... 344s Unpacking libaom3:amd64 (3.13.1-2) ... 344s Selecting previously unselected package libblas3:amd64. 344s Preparing to unpack .../048-libblas3_3.12.1-7ubuntu1_amd64.deb ... 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previously unselected package libgav1-2:amd64. 344s Preparing to unpack .../054-libgav1-2_0.20.0-2build1_amd64.deb ... 344s Unpacking libgav1-2:amd64 (0.20.0-2build1) ... 344s Selecting previously unselected package libjpeg-turbo8:amd64. 344s Preparing to unpack .../055-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 344s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 344s Selecting previously unselected package libjpeg8:amd64. 344s Preparing to unpack .../056-libjpeg8_8c-2ubuntu11_amd64.deb ... 344s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 344s Selecting previously unselected package libyuv0:amd64. 344s Preparing to unpack .../057-libyuv0_0.0.1922.20260106-1_amd64.deb ... 344s Unpacking libyuv0:amd64 (0.0.1922.20260106-1) ... 344s Selecting previously unselected package libavif16:amd64. 344s Preparing to unpack .../058-libavif16_1.3.0-1ubuntu3_amd64.deb ... 344s Unpacking libavif16:amd64 (1.3.0-1ubuntu3) ... 344s Selecting previously unselected package libblas-dev:amd64. 344s 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previously unselected package libde265-0:amd64. 345s Preparing to unpack .../070-libde265-0_1.0.16-1build1_amd64.deb ... 345s Unpacking libde265-0:amd64 (1.0.16-1build1) ... 345s Selecting previously unselected package libdeflate0:amd64. 345s Preparing to unpack .../071-libdeflate0_1.23-2_amd64.deb ... 345s Unpacking libdeflate0:amd64 (1.23-2) ... 345s Selecting previously unselected package libdeflate-dev:amd64. 345s Preparing to unpack .../072-libdeflate-dev_1.23-2_amd64.deb ... 345s Unpacking libdeflate-dev:amd64 (1.23-2) ... 345s Selecting previously unselected package libfyba0t64:amd64. 345s Preparing to unpack .../073-libfyba0t64_4.1.1-11build2_amd64.deb ... 345s Unpacking libfyba0t64:amd64 (4.1.1-11build2) ... 345s Selecting previously unselected package libminizip1t64:amd64. 345s Preparing to unpack .../074-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ... 345s Unpacking libminizip1t64:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 345s Selecting previously unselected package libfreexl1:amd64. 345s Preparing to unpack .../075-libfreexl1_2.0.0-1build3_amd64.deb ... 345s Unpacking libfreexl1:amd64 (2.0.0-1build3) ... 345s Selecting previously unselected package libgeos3.14.1:amd64. 345s Preparing to unpack .../076-libgeos3.14.1_3.14.1-2_amd64.deb ... 345s Unpacking libgeos3.14.1:amd64 (3.14.1-2) ... 345s Selecting previously unselected package libgeos-c1t64:amd64. 345s Preparing to unpack .../077-libgeos-c1t64_3.14.1-2_amd64.deb ... 345s Unpacking libgeos-c1t64:amd64 (3.14.1-2) ... 345s Selecting previously unselected package proj-data. 345s Preparing to unpack .../078-proj-data_9.7.1-1_all.deb ... 345s Unpacking proj-data (9.7.1-1) ... 345s Selecting previously unselected package libjbig0:amd64. 345s Preparing to unpack .../079-libjbig0_2.1-6.1ubuntu3_amd64.deb ... 345s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ... 345s Selecting previously unselected package liblerc4:amd64. 345s Preparing to unpack .../080-liblerc4_4.0.0+ds-5ubuntu2_amd64.deb ... 345s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 345s Selecting previously unselected package libsharpyuv0:amd64. 345s Preparing to unpack .../081-libsharpyuv0_1.5.0-0.1build1_amd64.deb ... 345s Unpacking libsharpyuv0:amd64 (1.5.0-0.1build1) ... 345s Selecting previously unselected package libwebp7:amd64. 345s Preparing to unpack .../082-libwebp7_1.5.0-0.1build1_amd64.deb ... 345s Unpacking libwebp7:amd64 (1.5.0-0.1build1) ... 345s Selecting previously unselected package libtiff6:amd64. 345s Preparing to unpack .../083-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 345s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 345s Selecting previously unselected package libproj25:amd64. 345s Preparing to unpack .../084-libproj25_9.7.1-1_amd64.deb ... 345s Unpacking libproj25:amd64 (9.7.1-1) ... 345s Selecting previously unselected package libgeotiff5:amd64. 345s Preparing to unpack .../085-libgeotiff5_1.7.4-1_amd64.deb ... 345s Unpacking libgeotiff5:amd64 (1.7.4-1) ... 345s Selecting previously unselected package libgif7:amd64. 345s Preparing to unpack .../086-libgif7_5.2.2-1ubuntu3_amd64.deb ... 345s Unpacking libgif7:amd64 (5.2.2-1ubuntu3) ... 345s Selecting previously unselected package libsz2:amd64. 345s Preparing to unpack .../087-libsz2_1.1.5-1_amd64.deb ... 345s Unpacking libsz2:amd64 (1.1.5-1) ... 345s Selecting previously unselected package libhdf4-0:amd64. 345s Preparing to unpack .../088-libhdf4-0_4.3.1-2_amd64.deb ... 345s Unpacking libhdf4-0:amd64 (4.3.1-2) ... 345s Selecting previously unselected package libhdf5-310:amd64. 345s Preparing to unpack .../089-libhdf5-310_1.14.6+repack-2_amd64.deb ... 345s Unpacking libhdf5-310:amd64 (1.14.6+repack-2) ... 345s Selecting previously unselected package libheif-plugin-aomdec:amd64. 345s Preparing to unpack .../090-libheif-plugin-aomdec_1.21.2-1_amd64.deb ... 345s Unpacking libheif-plugin-aomdec:amd64 (1.21.2-1) ... 345s Selecting previously unselected package libheif-plugin-libde265:amd64. 345s Preparing to unpack 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package libmysqlclient24:amd64. 345s Preparing to unpack .../102-libmysqlclient24_8.4.8-0ubuntu1_amd64.deb ... 345s Unpacking libmysqlclient24:amd64 (8.4.8-0ubuntu1) ... 345s Selecting previously unselected package libhdf5-hl-310:amd64. 345s Preparing to unpack .../103-libhdf5-hl-310_1.14.6+repack-2_amd64.deb ... 345s Unpacking libhdf5-hl-310:amd64 (1.14.6+repack-2) ... 345s Selecting previously unselected package libnetcdf22:amd64. 345s Preparing to unpack .../104-libnetcdf22_1%3a4.9.3-1build1_amd64.deb ... 345s Unpacking libnetcdf22:amd64 (1:4.9.3-1build1) ... 345s Selecting previously unselected package libltdl7:amd64. 345s Preparing to unpack .../105-libltdl7_2.5.4-9_amd64.deb ... 345s Unpacking libltdl7:amd64 (2.5.4-9) ... 345s Selecting previously unselected package libodbc2:amd64. 345s Preparing to unpack .../106-libodbc2_2.3.14-1_amd64.deb ... 345s Unpacking libodbc2:amd64 (2.3.14-1) ... 345s Selecting previously unselected package unixodbc-common. 345s Preparing to unpack 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Selecting previously unselected package libgraphite2-3:amd64. 346s Preparing to unpack .../118-libgraphite2-3_1.3.14-11ubuntu1_amd64.deb ... 346s Unpacking libgraphite2-3:amd64 (1.3.14-11ubuntu1) ... 346s Selecting previously unselected package libharfbuzz0b:amd64. 346s Preparing to unpack .../119-libharfbuzz0b_12.3.1-1_amd64.deb ... 346s Unpacking libharfbuzz0b:amd64 (12.3.1-1) ... 346s Selecting previously unselected package x11-common. 346s Preparing to unpack .../120-x11-common_1%3a7.7+24ubuntu1_all.deb ... 346s Unpacking x11-common (1:7.7+24ubuntu1) ... 346s Selecting previously unselected package libice6:amd64. 346s Preparing to unpack .../121-libice6_2%3a1.1.1-1build1_amd64.deb ... 346s Unpacking libice6:amd64 (2:1.1.1-1build1) ... 346s Selecting previously unselected package libicu-dev:amd64. 346s Preparing to unpack .../122-libicu-dev_78.2-1ubuntu1_amd64.deb ... 346s Unpacking libicu-dev:amd64 (78.2-1ubuntu1) ... 346s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 346s Preparing to unpack .../123-libjpeg-turbo8-dev_2.1.5-4ubuntu2_amd64.deb ... 346s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-4ubuntu2) ... 346s Selecting previously unselected package libjpeg8-dev:amd64. 346s Preparing to unpack .../124-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 346s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 346s Selecting previously unselected package libjpeg-dev:amd64. 346s Preparing to unpack .../125-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 346s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 346s Selecting previously unselected package libjs-bootstrap. 346s Preparing to unpack .../126-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 346s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 346s Selecting previously unselected package libjs-popper.js. 346s Preparing to unpack .../127-libjs-popper.js_1.16.1+ds-6build1_all.deb ... 346s Unpacking libjs-popper.js (1.16.1+ds-6build1) ... 346s Selecting previously unselected package libjs-bootstrap4. 346s 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.../133-libjs-jquery-datatables_1.11.5+dfsg-2build1_all.deb ... 346s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2build1) ... 346s Selecting previously unselected package libjs-sifter.js. 346s Preparing to unpack .../134-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 346s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 346s Selecting previously unselected package libjs-microplugin.js. 346s Preparing to unpack .../135-libjs-microplugin.js_0.0.3+dfsg-2_all.deb ... 346s Unpacking libjs-microplugin.js (0.0.3+dfsg-2) ... 346s Selecting previously unselected package libjs-jquery-selectize.js. 346s Preparing to unpack .../136-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 346s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 346s Selecting previously unselected package libjs-jquery-ui. 346s Preparing to unpack .../137-libjs-jquery-ui_1.13.2+dfsg-1build1_all.deb ... 346s Unpacking libjs-jquery-ui (1.13.2+dfsg-1build1) ... 346s Selecting previously unselected package libjs-json. 346s 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libpaper2:amd64 (2.2.5-0.3build1) ... 346s Selecting previously unselected package libpaper-utils. 346s Preparing to unpack .../149-libpaper-utils_2.2.5-0.3build1_amd64.deb ... 346s Unpacking libpaper-utils (2.2.5-0.3build1) ... 346s Selecting previously unselected package libpcre2-16-0:amd64. 346s Preparing to unpack .../150-libpcre2-16-0_10.46-1_amd64.deb ... 346s Unpacking libpcre2-16-0:amd64 (10.46-1) ... 346s Selecting previously unselected package libpcre2-32-0:amd64. 346s Preparing to unpack .../151-libpcre2-32-0_10.46-1_amd64.deb ... 346s Unpacking libpcre2-32-0:amd64 (10.46-1) ... 346s Selecting previously unselected package libpcre2-posix3:amd64. 346s Preparing to unpack .../152-libpcre2-posix3_10.46-1_amd64.deb ... 346s Unpacking libpcre2-posix3:amd64 (10.46-1) ... 346s Selecting previously unselected package libpcre2-dev:amd64. 346s Preparing to unpack .../153-libpcre2-dev_10.46-1_amd64.deb ... 346s Unpacking libpcre2-dev:amd64 (10.46-1) ... 347s Selecting previously unselected package libpkgconf3:amd64. 347s Preparing to unpack .../154-libpkgconf3_1.8.1-4build1_amd64.deb ... 347s Unpacking libpkgconf3:amd64 (1.8.1-4build1) ... 347s Selecting previously unselected package zlib1g-dev:amd64. 347s Preparing to unpack .../155-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ... 347s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 347s Selecting previously unselected package libpng-dev:amd64. 347s Preparing to unpack .../156-libpng-dev_1.6.54-1_amd64.deb ... 347s Unpacking libpng-dev:amd64 (1.6.54-1) ... 347s Selecting previously unselected package libreadline-dev:amd64. 347s Preparing to unpack .../157-libreadline-dev_8.3-3_amd64.deb ... 347s Unpacking libreadline-dev:amd64 (8.3-3) ... 347s Selecting previously unselected package libsm6:amd64. 347s Preparing to unpack .../158-libsm6_2%3a1.2.6-1_amd64.deb ... 347s Unpacking libsm6:amd64 (2:1.2.6-1) ... 347s Selecting previously unselected package libtcl8.6:amd64. 347s Preparing to unpack .../159-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... 347s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... 347s Selecting previously unselected package libxft2:amd64. 347s Preparing to unpack .../160-libxft2_2.3.6-1build2_amd64.deb ... 347s Unpacking libxft2:amd64 (2.3.6-1build2) ... 347s Selecting previously unselected package libxss1:amd64. 347s Preparing to unpack .../161-libxss1_1%3a1.2.3-1build4_amd64.deb ... 347s Unpacking libxss1:amd64 (1:1.2.3-1build4) ... 347s Selecting previously unselected package libtk8.6:amd64. 347s Preparing to unpack .../162-libtk8.6_8.6.17-1_amd64.deb ... 347s Unpacking libtk8.6:amd64 (8.6.17-1) ... 347s Selecting previously unselected package libudunits2-data. 347s Preparing to unpack .../163-libudunits2-data_2.2.28-8_all.deb ... 347s Unpacking libudunits2-data (2.2.28-8) ... 347s Selecting previously unselected package libudunits2-0:amd64. 347s Preparing to unpack .../164-libudunits2-0_2.2.28-8_amd64.deb ... 347s Unpacking libudunits2-0:amd64 (2.2.28-8) ... 347s Selecting previously unselected package libxt6t64:amd64. 347s Preparing to unpack .../165-libxt6t64_1%3a1.2.1-1.3_amd64.deb ... 347s Unpacking libxt6t64:amd64 (1:1.2.1-1.3) ... 347s Selecting previously unselected package libzstd-dev:amd64. 347s Preparing to unpack .../166-libzstd-dev_1.5.7+dfsg-2_amd64.deb ... 347s Unpacking libzstd-dev:amd64 (1.5.7+dfsg-2) ... 347s Selecting previously unselected package node-bootstrap-sass. 347s Preparing to unpack .../167-node-bootstrap-sass_3.4.3-2_all.deb ... 347s Unpacking node-bootstrap-sass (3.4.3-2) ... 347s Selecting previously unselected package node-html5shiv. 347s Preparing to unpack .../168-node-html5shiv_3.7.3+dfsg-5_all.deb ... 347s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 347s Selecting previously unselected package node-normalize.css. 347s Preparing to unpack .../169-node-normalize.css_8.0.1-5.1_all.deb ... 347s Unpacking node-normalize.css (8.0.1-5.1) ... 347s Selecting previously unselected package pandoc-data. 347s Preparing to unpack .../170-pandoc-data_3.1.11.1-3build1_all.deb ... 347s Unpacking pandoc-data (3.1.11.1-3build1) ... 347s Selecting previously unselected package pandoc. 347s Preparing to unpack .../171-pandoc_3.1.11.1+ds-4_amd64.deb ... 347s Unpacking pandoc (3.1.11.1+ds-4) ... 347s Selecting previously unselected package zip. 347s Preparing to unpack .../172-zip_3.0-15ubuntu2_amd64.deb ... 347s Unpacking zip (3.0-15ubuntu2) ... 347s Selecting previously unselected package unzip. 347s Preparing to unpack .../173-unzip_6.0-29ubuntu1_amd64.deb ... 347s Unpacking unzip (6.0-29ubuntu1) ... 347s Selecting previously unselected package xdg-utils. 347s Preparing to unpack .../174-xdg-utils_1.2.1-2ubuntu2_all.deb ... 347s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 347s Selecting previously unselected package r-base-core. 347s Preparing to unpack .../175-r-base-core_4.5.2-1ubuntu2_amd64.deb ... 347s Unpacking r-base-core (4.5.2-1ubuntu2) ... 348s Selecting previously unselected package liblzma-dev:amd64. 348s Preparing to unpack .../176-liblzma-dev_5.8.2-2_amd64.deb ... 348s Unpacking liblzma-dev:amd64 (5.8.2-2) ... 348s Selecting previously unselected package pkgconf-bin. 348s Preparing to unpack .../177-pkgconf-bin_1.8.1-4build1_amd64.deb ... 348s Unpacking pkgconf-bin (1.8.1-4build1) ... 348s Selecting previously unselected package pkgconf:amd64. 348s Preparing to unpack .../178-pkgconf_1.8.1-4build1_amd64.deb ... 348s Unpacking pkgconf:amd64 (1.8.1-4build1) ... 348s Selecting previously unselected package libtirpc-dev:amd64. 348s Preparing to unpack .../179-libtirpc-dev_1.3.6+ds-1_amd64.deb ... 348s Unpacking libtirpc-dev:amd64 (1.3.6+ds-1) ... 348s Selecting previously unselected package r-base-dev. 348s Preparing to unpack .../180-r-base-dev_4.5.2-1ubuntu2_all.deb ... 348s Unpacking r-base-dev (4.5.2-1ubuntu2) ... 348s Selecting previously unselected package pkg-r-autopkgtest. 348s Preparing to unpack .../181-pkg-r-autopkgtest_20250812_all.deb ... 348s Unpacking pkg-r-autopkgtest (20250812) ... 348s Selecting previously unselected package r-cran-abind. 348s Preparing to unpack .../182-r-cran-abind_1.4-8-1build1_all.deb ... 348s Unpacking r-cran-abind (1.4-8-1build1) ... 348s Selecting previously unselected package r-cran-cli. 348s Preparing to unpack .../183-r-cran-cli_3.6.4-1_amd64.deb ... 348s Unpacking r-cran-cli (3.6.4-1) ... 348s Selecting previously unselected package r-cran-generics. 348s Preparing to unpack .../184-r-cran-generics_0.1.4-1_all.deb ... 348s Unpacking r-cran-generics (0.1.4-1) ... 348s Selecting previously unselected package r-cran-glue. 348s Preparing to unpack .../185-r-cran-glue_1.8.0-1_amd64.deb ... 348s Unpacking r-cran-glue (1.8.0-1) ... 348s Selecting previously unselected package r-cran-rlang. 348s Preparing to unpack .../186-r-cran-rlang_1.1.5-3_amd64.deb ... 348s Unpacking r-cran-rlang (1.1.5-3) ... 348s Selecting previously unselected package r-cran-lifecycle. 348s Preparing to unpack .../187-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 348s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 348s Selecting previously unselected package r-cran-magrittr. 348s Preparing to unpack .../188-r-cran-magrittr_2.0.3-1_amd64.deb ... 348s Unpacking r-cran-magrittr (2.0.3-1) ... 348s Selecting previously unselected package r-cran-utf8. 348s Preparing to unpack .../189-r-cran-utf8_1.2.4-1_amd64.deb ... 348s Unpacking r-cran-utf8 (1.2.4-1) ... 348s Selecting previously unselected package r-cran-vctrs. 348s Preparing to unpack .../190-r-cran-vctrs_0.6.5-1_amd64.deb ... 348s Unpacking r-cran-vctrs (0.6.5-1) ... 348s Selecting previously unselected package r-cran-pillar. 348s Preparing to unpack .../191-r-cran-pillar_1.11.1+dfsg-1_all.deb ... 348s Unpacking r-cran-pillar (1.11.1+dfsg-1) ... 348s Selecting previously unselected package r-cran-r6. 348s Preparing to unpack .../192-r-cran-r6_2.6.1-1_all.deb ... 348s Unpacking r-cran-r6 (2.6.1-1) ... 348s Selecting previously unselected package r-cran-fansi. 348s Preparing to unpack .../193-r-cran-fansi_1.0.6-2_amd64.deb ... 348s Unpacking r-cran-fansi (1.0.6-2) ... 348s Selecting previously unselected package r-cran-pkgconfig. 348s Preparing to unpack .../194-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 348s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 348s Selecting previously unselected package r-cran-tibble. 348s Preparing to unpack .../195-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 348s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 348s Selecting previously unselected package r-cran-withr. 348s Preparing to unpack .../196-r-cran-withr_3.0.2+dfsg-1_all.deb ... 348s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 348s Selecting previously unselected package r-cran-tidyselect. 348s Preparing to unpack .../197-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 348s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 348s Selecting previously unselected package r-cran-dplyr. 348s Preparing to unpack .../198-r-cran-dplyr_1.1.4-4_amd64.deb ... 348s Unpacking r-cran-dplyr (1.1.4-4) ... 348s Selecting previously unselected package r-cran-purrr. 348s Preparing to unpack .../199-r-cran-purrr_1.0.4-1_amd64.deb ... 348s Unpacking r-cran-purrr (1.0.4-1) ... 348s Selecting previously unselected package r-cran-mass. 348s Preparing to unpack .../200-r-cran-mass_7.3-65-1_amd64.deb ... 348s Unpacking r-cran-mass (7.3-65-1) ... 348s Selecting previously unselected package r-cran-class. 348s Preparing to unpack .../201-r-cran-class_7.3-23-1_amd64.deb ... 348s Unpacking r-cran-class (7.3-23-1) ... 348s Selecting previously unselected package r-cran-proxy. 348s Preparing to unpack .../202-r-cran-proxy_0.4-27-1_amd64.deb ... 348s Unpacking r-cran-proxy (0.4-27-1) ... 348s Selecting previously unselected package r-cran-e1071. 348s Preparing to unpack .../203-r-cran-e1071_1.7-17-1_amd64.deb ... 348s Unpacking r-cran-e1071 (1.7-17-1) ... 348s Selecting previously unselected package r-cran-kernsmooth. 348s Preparing to unpack .../204-r-cran-kernsmooth_2.23-26-1build1_amd64.deb ... 348s Unpacking r-cran-kernsmooth (2.23-26-1build1) ... 348s Selecting previously unselected package r-cran-classint. 348s Preparing to unpack .../205-r-cran-classint_0.4-11+dfsg-1_amd64.deb ... 348s Unpacking r-cran-classint (0.4-11+dfsg-1) ... 348s Selecting previously unselected package r-cran-dbi. 348s Preparing to unpack .../206-r-cran-dbi_1.2.3-1build1_all.deb ... 348s Unpacking r-cran-dbi (1.2.3-1build1) ... 348s Selecting previously unselected package r-cran-littler. 348s Preparing to unpack .../207-r-cran-littler_0.3.21-2_amd64.deb ... 348s Unpacking r-cran-littler (0.3.21-2) ... 348s Selecting previously unselected package r-cran-pkgkitten. 348s Preparing to unpack .../208-r-cran-pkgkitten_0.2.4-1_all.deb ... 348s Unpacking r-cran-pkgkitten (0.2.4-1) ... 348s Selecting previously unselected package r-cran-rcpp. 348s Preparing to unpack .../209-r-cran-rcpp_1.1.0-1_amd64.deb ... 348s Unpacking r-cran-rcpp (1.1.0-1) ... 348s Selecting previously unselected package r-cran-wk. 348s Preparing to unpack .../210-r-cran-wk_0.9.4-1_amd64.deb ... 348s Unpacking r-cran-wk (0.9.4-1) ... 348s Selecting previously unselected package r-cran-s2. 348s Preparing to unpack .../211-r-cran-s2_1.1.9-1build1_amd64.deb ... 348s Unpacking r-cran-s2 (1.1.9-1build1) ... 348s Selecting previously unselected package r-cran-units. 348s Preparing to unpack .../212-r-cran-units_0.8-7+dfsg-2_amd64.deb ... 348s Unpacking r-cran-units (0.8-7+dfsg-2) ... 348s Selecting previously unselected package r-cran-sf. 348s Preparing to unpack .../213-r-cran-sf_1.0-19+dfsg-2build2_amd64.deb ... 348s Unpacking r-cran-sf (1.0-19+dfsg-2build2) ... 348s Selecting previously unselected package r-cran-areal. 348s Preparing to unpack .../214-r-cran-areal_0.1.8+dfsg-2_all.deb ... 348s Unpacking r-cran-areal (0.1.8+dfsg-2) ... 348s Selecting previously unselected package r-cran-sys. 349s Preparing to unpack .../215-r-cran-sys_3.4.3-1_amd64.deb ... 349s Unpacking r-cran-sys (3.4.3-1) ... 349s Selecting previously unselected package r-cran-askpass. 349s Preparing to unpack .../216-r-cran-askpass_1.2.1-1_amd64.deb ... 349s Unpacking r-cran-askpass (1.2.1-1) ... 349s Selecting previously unselected package r-cran-base64enc. 349s Preparing to unpack .../217-r-cran-base64enc_0.1-3-3build1_amd64.deb ... 349s Unpacking r-cran-base64enc (0.1-3-3build1) ... 349s Selecting previously unselected package r-cran-bdsmatrix. 349s Preparing to unpack .../218-r-cran-bdsmatrix_1.3-7-1_amd64.deb ... 349s Unpacking r-cran-bdsmatrix (1.3-7-1) ... 349s Selecting previously unselected package r-cran-brio. 349s Preparing to unpack .../219-r-cran-brio_1.1.5-1_amd64.deb ... 349s Unpacking r-cran-brio (1.1.5-1) ... 349s Selecting previously unselected package r-cran-fastmap. 349s Preparing to unpack .../220-r-cran-fastmap_1.2.0-1_amd64.deb ... 349s Unpacking r-cran-fastmap (1.2.0-1) ... 349s Selecting previously unselected package r-cran-cachem. 349s Preparing to unpack .../221-r-cran-cachem_1.1.0-1_amd64.deb ... 349s Unpacking r-cran-cachem (1.1.0-1) ... 349s Selecting previously unselected package r-cran-digest. 349s Preparing to unpack .../222-r-cran-digest_0.6.39-1_amd64.deb ... 349s Unpacking r-cran-digest (0.6.39-1) ... 349s Selecting previously unselected package r-cran-htmltools. 349s Preparing to unpack .../223-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 349s Unpacking r-cran-htmltools (0.5.8.1-1) ... 349s Selecting previously unselected package r-cran-jquerylib. 349s Preparing to unpack .../224-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ... 349s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ... 349s Selecting previously unselected package r-cran-jsonlite. 349s Preparing to unpack .../225-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 349s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 349s Selecting previously unselected package r-cran-memoise. 349s Preparing to unpack .../226-r-cran-memoise_2.0.1-1build1_all.deb ... 349s Unpacking r-cran-memoise (2.0.1-1build1) ... 349s Selecting previously unselected package r-cran-mime. 349s Preparing to unpack .../227-r-cran-mime_0.12-2_amd64.deb ... 349s Unpacking r-cran-mime (0.12-2) ... 349s Selecting previously unselected package r-cran-fs. 349s Preparing to unpack .../228-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 349s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 349s Selecting previously unselected package r-cran-rappdirs. 349s Preparing to unpack .../229-r-cran-rappdirs_0.3.3-1build1_amd64.deb ... 349s Unpacking r-cran-rappdirs (0.3.3-1build1) ... 349s Selecting previously unselected package r-cran-sass. 349s Preparing to unpack .../230-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 349s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 349s Selecting previously unselected package r-cran-bslib. 349s Preparing to unpack .../231-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ... 349s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ... 349s Selecting previously unselected package r-cran-cairo. 349s Preparing to unpack .../232-r-cran-cairo_1.6-2-1_amd64.deb ... 349s Unpacking r-cran-cairo (1.6-2-1) ... 349s Selecting previously unselected package r-cran-ps. 349s Preparing to unpack .../233-r-cran-ps_1.9.0-1_amd64.deb ... 349s Unpacking r-cran-ps (1.9.0-1) ... 349s Selecting previously unselected package r-cran-processx. 349s Preparing to unpack .../234-r-cran-processx_3.8.6-1_amd64.deb ... 349s Unpacking r-cran-processx (3.8.6-1) ... 349s Selecting previously unselected package r-cran-callr. 349s Preparing to unpack .../235-r-cran-callr_3.7.6-1_all.deb ... 349s Unpacking r-cran-callr (3.7.6-1) ... 349s Selecting previously unselected package r-cran-cftime. 349s Preparing to unpack .../236-r-cran-cftime_1.7.2-1_all.deb ... 349s Unpacking r-cran-cftime (1.7.2-1) ... 349s Selecting previously unselected package r-cran-cluster. 349s Preparing to unpack .../237-r-cran-cluster_2.1.8.1-1_amd64.deb ... 349s Unpacking r-cran-cluster (2.1.8.1-1) ... 349s Selecting previously unselected package r-cran-clue. 349s Preparing to unpack .../238-r-cran-clue_0.3-66-1_amd64.deb ... 349s Unpacking r-cran-clue (0.3-66-1) ... 349s Selecting previously unselected package r-cran-codetools. 349s Preparing to unpack .../239-r-cran-codetools_0.2-20-1build1_all.deb ... 349s Unpacking r-cran-codetools (0.2-20-1build1) ... 349s Selecting previously unselected package r-cran-collapse. 349s Preparing to unpack .../240-r-cran-collapse_2.1.0-1_amd64.deb ... 349s Unpacking r-cran-collapse (2.1.0-1) ... 349s Selecting previously unselected package r-cran-commonmark. 349s Preparing to unpack .../241-r-cran-commonmark_1.9.5-1_amd64.deb ... 349s Unpacking r-cran-commonmark (1.9.5-1) ... 349s Selecting previously unselected package r-cran-lazyeval. 349s Preparing to unpack .../242-r-cran-lazyeval_0.2.2-1build2_amd64.deb ... 349s Unpacking r-cran-lazyeval (0.2.2-1build2) ... 349s Selecting previously unselected package r-cran-rex. 349s Preparing to unpack .../243-r-cran-rex_1.2.1-1build1_all.deb ... 349s Unpacking r-cran-rex (1.2.1-1build1) ... 349s Selecting previously unselected package r-cran-curl. 349s Preparing to unpack .../244-r-cran-curl_7.0.0+dfsg-1_amd64.deb ... 349s Unpacking r-cran-curl (7.0.0+dfsg-1) ... 349s Selecting previously unselected package r-cran-openssl. 349s Preparing to unpack .../245-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 349s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 349s Selecting previously unselected package r-cran-httr. 349s Preparing to unpack .../246-r-cran-httr_1.4.7+dfsg-1_all.deb ... 349s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 349s Selecting previously unselected package r-cran-crayon. 349s Preparing to unpack .../247-r-cran-crayon_1.5.3-1_all.deb ... 349s Unpacking r-cran-crayon (1.5.3-1) ... 349s Selecting previously unselected package r-cran-yaml. 349s Preparing to unpack .../248-r-cran-yaml_2.3.10-1_amd64.deb ... 349s Unpacking r-cran-yaml (2.3.10-1) ... 349s Selecting previously unselected package r-cran-covr. 349s Preparing to unpack .../249-r-cran-covr_3.6.4+dfsg-1_amd64.deb ... 349s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 349s Selecting previously unselected package r-cran-cpp11. 349s Preparing to unpack .../250-r-cran-cpp11_0.5.3-1_all.deb ... 349s Unpacking r-cran-cpp11 (0.5.3-1) ... 349s Selecting previously unselected package r-cran-deldir. 349s Preparing to unpack .../251-r-cran-deldir_2.0-4-1build1_amd64.deb ... 349s Unpacking r-cran-deldir (2.0-4-1build1) ... 349s Selecting previously unselected package r-cran-desc. 349s Preparing to unpack .../252-r-cran-desc_1.4.3-1_all.deb ... 349s Unpacking r-cran-desc (1.4.3-1) ... 349s Selecting previously unselected package r-cran-diffobj. 349s Preparing to unpack .../253-r-cran-diffobj_0.3.5-1build1_amd64.deb ... 349s Unpacking r-cran-diffobj (0.3.5-1build1) ... 349s Selecting previously unselected package r-cran-evaluate. 349s Preparing to unpack .../254-r-cran-evaluate_1.0.3-1_all.deb ... 349s Unpacking r-cran-evaluate (1.0.3-1) ... 349s Selecting previously unselected package r-cran-farver. 349s Preparing to unpack .../255-r-cran-farver_2.1.2-1_amd64.deb ... 349s Unpacking r-cran-farver (2.1.2-1) ... 349s Selecting previously unselected package r-cran-fnn. 349s Preparing to unpack .../256-r-cran-fnn_1.1.4.1-1_amd64.deb ... 349s Unpacking r-cran-fnn (1.1.4.1-1) ... 349s Selecting previously unselected package r-cran-fontawesome. 349s Preparing to unpack .../257-r-cran-fontawesome_0.5.3-1_all.deb ... 349s Unpacking r-cran-fontawesome (0.5.3-1) ... 350s Selecting previously unselected package r-cran-formula. 350s Preparing to unpack .../258-r-cran-formula_1.2-5-1_all.deb ... 350s Unpacking r-cran-formula (1.2-5-1) ... 350s Selecting previously unselected package r-cran-globals. 350s Preparing to unpack .../259-r-cran-globals_0.18.0-1_all.deb ... 350s Unpacking r-cran-globals (0.18.0-1) ... 350s Selecting previously unselected package r-cran-listenv. 350s Preparing to unpack .../260-r-cran-listenv_0.10.0+dfsg-1_all.deb ... 350s Unpacking r-cran-listenv (0.10.0+dfsg-1) ... 350s Selecting previously unselected package r-cran-parallelly. 350s Preparing to unpack .../261-r-cran-parallelly_1.42.0-1_amd64.deb ... 350s Unpacking r-cran-parallelly (1.42.0-1) ... 350s Selecting previously unselected package r-cran-future. 350s Preparing to unpack .../262-r-cran-future_1.34.0+dfsg-1_all.deb ... 350s Unpacking r-cran-future (1.34.0+dfsg-1) ... 350s Selecting previously unselected package r-cran-future.apply. 350s Preparing to unpack .../263-r-cran-future.apply_1.11.3+dfsg-1_all.deb ... 350s Unpacking r-cran-future.apply (1.11.3+dfsg-1) ... 350s Selecting previously unselected package r-cran-gtable. 350s Preparing to unpack .../264-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 350s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 350s Selecting previously unselected package r-cran-isoband. 350s Preparing to unpack .../265-r-cran-isoband_0.2.7-1_amd64.deb ... 350s Unpacking r-cran-isoband (0.2.7-1) ... 350s Selecting previously unselected package r-cran-lattice. 350s Preparing to unpack .../266-r-cran-lattice_0.22-7-1_amd64.deb ... 350s Unpacking r-cran-lattice (0.22-7-1) ... 350s Selecting previously unselected package r-cran-nlme. 350s Preparing to unpack .../267-r-cran-nlme_3.1.168-1_amd64.deb ... 350s Unpacking r-cran-nlme (3.1.168-1) ... 350s Selecting previously unselected package r-cran-matrix. 350s Preparing to unpack .../268-r-cran-matrix_1.7-4-1_amd64.deb ... 350s Unpacking r-cran-matrix (1.7-4-1) ... 350s Selecting previously unselected package r-cran-mgcv. 350s Preparing to unpack .../269-r-cran-mgcv_1.9-4-1_amd64.deb ... 350s Unpacking r-cran-mgcv (1.9-4-1) ... 350s Selecting previously unselected package r-cran-labeling. 350s Preparing to unpack .../270-r-cran-labeling_0.4.3-1_all.deb ... 350s Unpacking r-cran-labeling (0.4.3-1) ... 350s Selecting previously unselected package r-cran-rcolorbrewer. 350s Preparing to unpack .../271-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ... 350s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ... 350s Selecting previously unselected package r-cran-viridislite. 350s Preparing to unpack .../272-r-cran-viridislite_0.4.2-2_all.deb ... 350s Unpacking r-cran-viridislite (0.4.2-2) ... 350s Selecting previously unselected package r-cran-scales. 350s Preparing to unpack .../273-r-cran-scales_1.4.0-1_all.deb ... 350s Unpacking r-cran-scales (1.4.0-1) ... 350s Selecting previously unselected package r-cran-ggplot2. 350s Preparing to unpack .../274-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 350s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 350s Selecting previously unselected package r-cran-tweenr. 350s Preparing to unpack .../275-r-cran-tweenr_2.0.3-1_amd64.deb ... 350s Unpacking r-cran-tweenr (2.0.3-1) ... 350s Selecting previously unselected package r-cran-polyclip. 350s Preparing to unpack .../276-r-cran-polyclip_1.10-7-1_amd64.deb ... 350s Unpacking r-cran-polyclip (1.10-7-1) ... 350s Selecting previously unselected package r-cran-systemfonts. 350s Preparing to unpack .../277-r-cran-systemfonts_1.2.1-1_amd64.deb ... 350s Unpacking r-cran-systemfonts (1.2.1-1) ... 350s Selecting previously unselected package r-cran-rcppeigen. 350s Preparing to unpack .../278-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 350s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 350s Selecting previously unselected package r-cran-ggforce. 350s Preparing to unpack .../279-r-cran-ggforce_0.4.2-1_amd64.deb ... 350s Unpacking r-cran-ggforce (0.4.2-1) ... 350s Selecting previously unselected package r-cran-stringi. 350s Preparing to unpack .../280-r-cran-stringi_1.8.4-1build2_amd64.deb ... 350s Unpacking r-cran-stringi (1.8.4-1build2) ... 350s Selecting previously unselected package r-cran-stringr. 350s Preparing to unpack .../281-r-cran-stringr_1.5.1-1_all.deb ... 350s Unpacking r-cran-stringr (1.5.1-1) ... 350s Selecting previously unselected package r-cran-ggthemes. 350s Preparing to unpack .../282-r-cran-ggthemes_5.2.0-1_all.deb ... 350s Unpacking r-cran-ggthemes (5.2.0-1) ... 350s Selecting previously unselected package r-cran-goftest. 350s Preparing to unpack .../283-r-cran-goftest_1.2-3-1build1_amd64.deb ... 350s Unpacking r-cran-goftest (1.2-3-1build1) ... 350s Selecting previously unselected package r-cran-gridextra. 350s Preparing to unpack .../284-r-cran-gridextra_2.3-3build2_all.deb ... 350s Unpacking r-cran-gridextra (2.3-3build2) ... 350s Selecting previously unselected package r-cran-xfun. 350s Preparing to unpack .../285-r-cran-xfun_0.55+dfsg-1_amd64.deb ... 350s Unpacking r-cran-xfun (0.55+dfsg-1) ... 350s Selecting previously unselected package r-cran-highr. 350s Preparing to unpack .../286-r-cran-highr_0.11+dfsg-1_all.deb ... 350s Unpacking r-cran-highr (0.11+dfsg-1) ... 350s Selecting previously unselected package r-cran-later. 350s Preparing to unpack .../287-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 350s Unpacking r-cran-later (1.4.1+dfsg-1) ... 350s Selecting previously unselected package r-cran-promises. 350s Preparing to unpack .../288-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 350s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 350s Selecting previously unselected package r-cran-httpuv. 350s Preparing to unpack .../289-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 350s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 350s Selecting previously unselected package r-cran-intervals. 350s Preparing to unpack .../290-r-cran-intervals_0.15.5-1_amd64.deb ... 350s Unpacking r-cran-intervals (0.15.5-1) ... 350s Selecting previously unselected package libjs-mathjax. 350s Preparing to unpack .../291-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ... 350s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ... 351s Selecting previously unselected package r-cran-knitr. 351s Preparing to unpack .../292-r-cran-knitr_1.51+dfsg-1_all.deb ... 351s Unpacking r-cran-knitr (1.51+dfsg-1) ... 351s Selecting previously unselected package r-cran-zoo. 351s Preparing to unpack .../293-r-cran-zoo_1.8-15-1_amd64.deb ... 351s Unpacking r-cran-zoo (1.8-15-1) ... 351s Selecting previously unselected package r-cran-lmtest. 351s Preparing to unpack .../294-r-cran-lmtest_0.9.40-1build1_amd64.deb ... 351s Unpacking r-cran-lmtest (0.9.40-1build1) ... 351s Selecting previously unselected package r-cran-lwgeom. 351s Preparing to unpack .../295-r-cran-lwgeom_0.2-14-1_amd64.deb ... 351s Unpacking r-cran-lwgeom (0.2-14-1) ... 351s Selecting previously unselected package r-cran-maps. 351s Preparing to unpack .../296-r-cran-maps_3.4.2.1-1_amd64.deb ... 351s Unpacking r-cran-maps (3.4.2.1-1) ... 351s Selecting previously unselected package r-cran-mapdata. 351s Preparing to unpack .../297-r-cran-mapdata_2.3.1-1_amd64.deb ... 351s Unpacking r-cran-mapdata (2.3.1-1) ... 351s Selecting previously unselected package r-cran-misctools. 351s Preparing to unpack .../298-r-cran-misctools_0.6-28-1_all.deb ... 351s Unpacking r-cran-misctools (0.6-28-1) ... 351s Selecting previously unselected package r-cran-sandwich. 351s Preparing to unpack .../299-r-cran-sandwich_3.1-1-1_all.deb ... 351s Unpacking r-cran-sandwich (3.1-1-1) ... 351s Selecting previously unselected package r-cran-maxlik. 351s Preparing to unpack .../300-r-cran-maxlik_1.5-2.2-1_all.deb ... 351s Unpacking r-cran-maxlik (1.5-2.2-1) ... 351s Selecting previously unselected package r-cran-rnetcdf. 351s Preparing to unpack .../301-r-cran-rnetcdf_2.11-1-1_amd64.deb ... 351s Unpacking r-cran-rnetcdf (2.11-1-1) ... 351s Selecting previously unselected package r-cran-tidyr. 351s Preparing to unpack .../302-r-cran-tidyr_1.3.1-1_amd64.deb ... 351s Unpacking r-cran-tidyr (1.3.1-1) ... 351s Selecting previously unselected package r-cran-ncmeta. 351s Preparing to unpack .../303-r-cran-ncmeta_0.4.0-1_all.deb ... 351s Unpacking r-cran-ncmeta (0.4.0-1) ... 351s Selecting previously unselected package r-cran-stars. 351s Preparing to unpack .../304-r-cran-stars_0.6-8-1_all.deb ... 351s Unpacking r-cran-stars (0.6-8-1) ... 351s Selecting previously unselected package r-cran-ncdfgeom. 351s Preparing to unpack .../305-r-cran-ncdfgeom_1.1.6+dfsg-1_all.deb ... 351s Unpacking r-cran-ncdfgeom (1.1.6+dfsg-1) ... 351s Selecting previously unselected package r-cran-pbapply. 351s Preparing to unpack .../306-r-cran-pbapply_1.7-2-1_all.deb ... 351s Unpacking r-cran-pbapply (1.7-2-1) ... 351s Selecting previously unselected package r-cran-pcict. 351s Preparing to unpack .../307-r-cran-pcict_0.5-4.4-1_amd64.deb ... 351s Unpacking r-cran-pcict (0.5-4.4-1) ... 351s Selecting previously unselected package r-cran-pkgbuild. 351s Preparing to unpack .../308-r-cran-pkgbuild_1.4.8-1_all.deb ... 351s Unpacking r-cran-pkgbuild (1.4.8-1) ... 351s Selecting previously unselected package r-cran-rprojroot. 351s Preparing to unpack .../309-r-cran-rprojroot_2.1.1-1_all.deb ... 351s Unpacking r-cran-rprojroot (2.1.1-1) ... 351s Selecting previously unselected package r-cran-pkgload. 351s Preparing to unpack .../310-r-cran-pkgload_1.4.1-1_all.deb ... 351s Unpacking r-cran-pkgload (1.4.1-1) ... 351s Selecting previously unselected package r-cran-rbibutils. 351s Preparing to unpack .../311-r-cran-rbibutils_2.3-1_amd64.deb ... 351s Unpacking r-cran-rbibutils (2.3-1) ... 351s Selecting previously unselected package r-cran-rdpack. 351s Preparing to unpack .../312-r-cran-rdpack_2.6.3-1_all.deb ... 351s Unpacking r-cran-rdpack (2.6.3-1) ... 351s Selecting previously unselected package r-cran-plm. 351s Preparing to unpack .../313-r-cran-plm_2.6-7-1_all.deb ... 351s Unpacking r-cran-plm (2.6-7-1) ... 351s Selecting previously unselected package r-cran-praise. 351s Preparing to unpack .../314-r-cran-praise_1.0.0-4build2_all.deb ... 351s Unpacking r-cran-praise (1.0.0-4build2) ... 351s Selecting previously unselected package r-cran-randomforest. 351s Preparing to unpack .../315-r-cran-randomforest_4.7-1.2-1_amd64.deb ... 351s Unpacking r-cran-randomforest (4.7-1.2-1) ... 351s Selecting previously unselected package r-cran-sp. 351s Preparing to unpack .../316-r-cran-sp_1%3a2.2-0+dfsg-1_amd64.deb ... 351s Unpacking r-cran-sp (1:2.2-0+dfsg-1) ... 351s Selecting previously unselected package r-cran-terra. 351s Preparing to unpack .../317-r-cran-terra_1.8-70-1build2_amd64.deb ... 351s Unpacking r-cran-terra (1.8-70-1build2) ... 351s Selecting previously unselected package r-cran-raster. 351s Preparing to unpack .../318-r-cran-raster_3.6-31-2_amd64.deb ... 351s Unpacking r-cran-raster (3.6-31-2) ... 351s Selecting previously unselected package r-cran-tinytex. 351s Preparing to unpack .../319-r-cran-tinytex_0.58-1_all.deb ... 351s Unpacking r-cran-tinytex (0.58-1) ... 351s Selecting previously unselected package libjs-modernizr. 351s Preparing to unpack .../320-libjs-modernizr_3.13.0-0.1build1_all.deb ... 351s Unpacking libjs-modernizr (3.13.0-0.1build1) ... 351s Selecting previously unselected package r-cran-xtable. 351s Preparing to unpack .../321-r-cran-xtable_1%3a1.8-4-2build1_all.deb ... 351s Unpacking r-cran-xtable (1:1.8-4-2build1) ... 351s Selecting previously unselected package r-cran-sourcetools. 351s Preparing to unpack .../322-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 351s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 351s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 351s Preparing to unpack .../323-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 351s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 351s Selecting previously unselected package r-cran-shiny. 352s Preparing to unpack .../324-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 352s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 352s Selecting previously unselected package r-cran-rmarkdown. 352s Preparing to unpack .../325-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 352s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 352s Selecting previously unselected package r-cran-survival. 352s Preparing to unpack .../326-r-cran-survival_3.8-6-1_amd64.deb ... 352s Unpacking r-cran-survival (3.8-6-1) ... 352s Selecting previously unselected package r-cran-rpart. 352s Preparing to unpack .../327-r-cran-rpart_4.1.24-1_amd64.deb ... 352s Unpacking r-cran-rpart (4.1.24-1) ... 352s Selecting previously unselected package r-cran-xts. 352s Preparing to unpack .../328-r-cran-xts_0.14.1-1_amd64.deb ... 352s Unpacking r-cran-xts (0.14.1-1) ... 352s Selecting previously unselected package r-cran-spacetime. 352s Preparing to unpack .../329-r-cran-spacetime_1.3-3-2_all.deb ... 352s Unpacking r-cran-spacetime (1.3-3-2) ... 352s Selecting previously unselected package r-cran-spatstat.utils. 352s Preparing to unpack .../330-r-cran-spatstat.utils_3.1-3-1_amd64.deb ... 352s Unpacking r-cran-spatstat.utils (3.1-3-1) ... 352s Selecting previously unselected package r-cran-spatstat.data. 352s Preparing to unpack .../331-r-cran-spatstat.data_3.1-6-1_all.deb ... 352s Unpacking r-cran-spatstat.data (3.1-6-1) ... 352s Selecting previously unselected package r-cran-spatstat.univar. 352s Preparing to unpack .../332-r-cran-spatstat.univar_3.1-2-1_amd64.deb ... 352s Unpacking r-cran-spatstat.univar (3.1-2-1) ... 352s Selecting previously unselected package r-cran-spatstat.geom. 352s Preparing to unpack .../333-r-cran-spatstat.geom_3.3-6-1_amd64.deb ... 352s Unpacking r-cran-spatstat.geom (3.3-6-1) ... 352s Selecting previously unselected package r-cran-spatstat.random. 352s Preparing to unpack .../334-r-cran-spatstat.random_3.3-3-1_amd64.deb ... 352s Unpacking r-cran-spatstat.random (3.3-3-1) ... 352s Selecting previously unselected package r-cran-tensor. 352s Preparing to unpack .../335-r-cran-tensor_1.5-4build1_all.deb ... 352s Unpacking r-cran-tensor (1.5-4build1) ... 352s Selecting previously unselected package r-cran-spatstat.sparse. 352s Preparing to unpack .../336-r-cran-spatstat.sparse_3.1-0-1_amd64.deb ... 352s Unpacking r-cran-spatstat.sparse (3.1-0-1) ... 352s Selecting previously unselected package r-cran-spatstat.explore. 352s Preparing to unpack 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(0.1.8+dfsg-2) ... 355s Setting up r-cran-raster (3.6-31-2) ... 355s Setting up r-cran-lwgeom (0.2-14-1) ... 355s Setting up r-cran-ncdfgeom (1.1.6+dfsg-1) ... 355s Processing triggers for libc-bin (2.42-2ubuntu4) ... 355s Processing triggers for man-db (2.13.1-1) ... 356s Processing triggers for install-info (7.2-5) ... 358s autopkgtest [17:49:09]: test environment configured for cross building 358s autopkgtest [17:49:09]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 358s autopkgtest [17:49:09]: test pkg-r-autopkgtest: [----------------------- 358s Test: Try to load the R library stars 358s 358s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 358s Copyright (C) 2025 The R Foundation for Statistical Computing 358s Platform: x86_64-pc-linux-gnu 358s 358s R is free software and comes with ABSOLUTELY NO WARRANTY. 358s You are welcome to redistribute it under certain conditions. 358s Type 'license()' or 'licence()' for distribution details. 358s 358s R is a collaborative project with many contributors. 358s Type 'contributors()' for more information and 358s 'citation()' on how to cite R or R packages in publications. 358s 358s Type 'demo()' for some demos, 'help()' for on-line help, or 358s 'help.start()' for an HTML browser interface to help. 358s Type 'q()' to quit R. 358s 358s > library('stars') 358s Loading required package: abind 358s Loading required package: sf 358s Linking to GEOS 3.14.1, GDAL 3.12.1, PROJ 9.7.0; sf_use_s2() is TRUE 358s > 359s autopkgtest [17:49:10]: test pkg-r-autopkgtest: -----------------------] 359s pkg-r-autopkgtest PASS 359s autopkgtest [17:49:10]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 359s autopkgtest [17:49:10]: @@@@@@@@@@@@@@@@@@@@ summary 359s run-unit-test PASS 359s pkg-r-autopkgtest PASS