0s autopkgtest [17:54:57]: starting date and time: 2026-01-29 17:54:57+0000 0s autopkgtest [17:54:57]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [17:54:57]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.6iql5nig/out --timeout-copy=6000 --needs-internet=try -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-raster --apt-upgrade r-cran-stars --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-raster/3.6-32-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-11.secgroup --name adt-resolute-i386-r-cran-stars-20260129-175456-juju-7f2275-prod-proposed-migration-environment-2-a1783b7b-4f76-4747-96a6-5ec98811453f --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 3s Creating nova instance adt-resolute-i386-r-cran-stars-20260129-175456-juju-7f2275-prod-proposed-migration-environment-2-a1783b7b-4f76-4747-96a6-5ec98811453f from image adt/ubuntu-resolute-amd64-server-20260129.img (UUID c052dd91-e629-41e8-9bf0-bad94c4bd713)... 85s autopkgtest [17:56:22]: testbed dpkg architecture: amd64 85s autopkgtest [17:56:22]: testbed apt version: 3.1.14 85s autopkgtest [17:56:22]: @@@@@@@@@@@@@@@@@@@@ test bed setup 85s autopkgtest [17:56:22]: testbed release detected to be: None 86s autopkgtest [17:56:23]: updating testbed package index (apt update) 86s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 86s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 86s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 86s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 86s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 86s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [106 kB] 86s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1073 kB] 86s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [25.4 kB] 87s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [133 kB] 87s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [115 kB] 87s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [4360 B] 87s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [12.3 kB] 87s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3696 B] 87s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 87s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [874 kB] 87s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [357 kB] 87s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [23.0 kB] 87s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [3336 B] 87s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [23.2 kB] 87s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [1036 B] 87s Fetched 2882 kB in 1s (3065 kB/s) 88s Reading package lists... 89s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 89s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 89s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 89s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 89s Reading package lists... 89s Reading package lists... 89s Building dependency tree... 89s Reading state information... 90s Calculating upgrade... 90s The following packages will be upgraded: 90s libsgutils2-1.48 sg3-utils sg3-utils-udev 90s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 90s Need to get 1147 kB of archives. 90s After this operation, 0 B of additional disk space will be used. 90s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libsgutils2-1.48 amd64 1.48-3ubuntu2 [120 kB] 90s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 sg3-utils amd64 1.48-3ubuntu2 [1020 kB] 90s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 sg3-utils-udev all 1.48-3ubuntu2 [6610 B] 90s dpkg-preconfigure: unable to re-open stdin: No such file or directory 90s Fetched 1147 kB in 0s (4359 kB/s) 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124211 files and directories currently installed.) 90s Preparing to unpack .../libsgutils2-1.48_1.48-3ubuntu2_amd64.deb ... 90s Unpacking libsgutils2-1.48:amd64 (1.48-3ubuntu2) over (1.48-3ubuntu1) ... 90s Preparing to unpack .../sg3-utils_1.48-3ubuntu2_amd64.deb ... 90s Unpacking sg3-utils (1.48-3ubuntu2) over (1.48-3ubuntu1) ... 90s Preparing to unpack .../sg3-utils-udev_1.48-3ubuntu2_all.deb ... 90s Unpacking sg3-utils-udev (1.48-3ubuntu2) over (1.48-3ubuntu1) ... 90s Setting up libsgutils2-1.48:amd64 (1.48-3ubuntu2) ... 90s Setting up sg3-utils (1.48-3ubuntu2) ... 90s Setting up sg3-utils-udev (1.48-3ubuntu2) ... 91s update-initramfs: deferring update (trigger activated) 91s Processing triggers for libc-bin (2.42-2ubuntu4) ... 91s Processing triggers for man-db (2.13.1-1) ... 91s Processing triggers for initramfs-tools (0.150ubuntu7) ... 91s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 96s autopkgtest [17:56:33]: upgrading testbed (apt dist-upgrade and autopurge) 96s Reading package lists... 96s Building dependency tree... 96s Reading state information... 96s Calculating upgrade... 96s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 96s Reading package lists... 96s Building dependency tree... 96s Reading state information... 97s Solving dependencies... 97s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 97s autopkgtest [17:56:34]: rebooting testbed after setup commands that affected boot 128s autopkgtest [17:57:05]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:49:02 UTC 2026 130s autopkgtest [17:57:07]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-stars 131s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-cran-stars 0.6-8-1 (dsc) [2749 B] 131s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-cran-stars 0.6-8-1 (tar) [4038 kB] 131s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-cran-stars 0.6-8-1 (diff) [4400 B] 131s gpgv: Signature made Wed Feb 19 23:48:57 2025 UTC 131s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 131s gpgv: issuer "plessy@debian.org" 131s gpgv: Can't check signature: No public key 131s dpkg-source: warning: cannot verify inline signature for ./r-cran-stars_0.6-8-1.dsc: no acceptable signature found 131s autopkgtest [17:57:08]: testing package r-cran-stars version 0.6-8-1 132s autopkgtest [17:57:09]: build not needed 136s autopkgtest [17:57:13]: test run-unit-test: preparing testbed 136s Reading package lists... 136s Building dependency tree... 136s Reading state information... 137s Solving dependencies... 137s The following NEW packages will be installed: 137s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 137s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gdal-data 137s gdal-plugins javascript-common libabsl20260107 libaec0 libaom3 137s libarmadillo15 libarpack2t64 libavif16 libblas3 libblosc1 libcairo2 137s libcfitsio10t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libfontconfig1 137s libfreexl1 libfyba0t64 libgav1-2 libgdal38 libgeos-c1t64 libgeos3.14.1 137s libgeotiff5 libgfortran5 libgif7 libgomp1 libgpgmepp6t64 libgraphite2-3 137s libharfbuzz0b libhdf4-0 libhdf5-310 libhdf5-hl-310 libheif-plugin-aomdec 137s libheif-plugin-libde265 libheif1 libhwy1t64 libice6 libjbig0 libjpeg-turbo8 137s libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 137s libjs-highlight.js libjs-jquery libjs-jquery-datatables 137s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 137s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 137s libjs-sifter.js libjs-twitter-bootstrap-datepicker libjxl0.11 libkmlbase1t64 137s libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 libltdl7 137s liblua5.4-0 libminizip1t64 libmuparser2v5 libmysqlclient24 libnetcdf22 137s libodbc2 libodbcinst2 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 137s libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpoppler147 137s libpq5 libproj25 libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 137s libspatialite8t64 libsuperlu7 libsz2 libtcl8.6 libthai-data libthai0 137s libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 libwebp7 137s libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 137s libxt6t64 libyuv0 mysql-common node-bootstrap-sass node-html5shiv 137s node-normalize.css pandoc pandoc-data proj-data r-base-core r-cran-abind 137s r-cran-areal r-cran-askpass r-cran-base64enc r-cran-bdsmatrix r-cran-brio 137s r-cran-bslib r-cran-cachem r-cran-cairo r-cran-callr r-cran-cftime 137s r-cran-class r-cran-classint r-cran-cli r-cran-clue r-cran-cluster 137s r-cran-codetools r-cran-collapse r-cran-commonmark r-cran-covr r-cran-cpp11 137s r-cran-crayon r-cran-cubelyr r-cran-curl r-cran-dbi r-cran-deldir 137s r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 137s r-cran-evaluate r-cran-exactextractr r-cran-fansi r-cran-farver 137s r-cran-fastmap r-cran-fnn r-cran-fontawesome r-cran-formula r-cran-fs 137s r-cran-future r-cran-future.apply r-cran-generics r-cran-ggforce 137s r-cran-ggplot2 r-cran-ggthemes r-cran-globals r-cran-glue r-cran-goftest 137s r-cran-gridextra r-cran-gstat r-cran-gtable r-cran-highr r-cran-htmltools 137s r-cran-httpuv r-cran-httr r-cran-intervals r-cran-isoband r-cran-jquerylib 137s r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later 137s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-listenv 137s r-cran-littler r-cran-lmtest r-cran-lwgeom r-cran-magrittr r-cran-mapdata 137s r-cran-maps r-cran-mass r-cran-matrix r-cran-maxlik r-cran-memoise 137s r-cran-mgcv r-cran-mime r-cran-misctools r-cran-ncdfgeom r-cran-ncmeta 137s r-cran-nlme r-cran-openssl r-cran-parallelly r-cran-pbapply r-cran-pcict 137s r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 137s r-cran-pkgload r-cran-plm r-cran-polyclip r-cran-praise r-cran-processx 137s r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr r-cran-r6 137s r-cran-randomforest r-cran-rappdirs r-cran-raster r-cran-rbibutils 137s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rdpack r-cran-rex 137s r-cran-rlang r-cran-rmarkdown r-cran-rnetcdf r-cran-rpart r-cran-rprojroot 137s r-cran-s2 r-cran-sandwich r-cran-sass r-cran-scales r-cran-sf r-cran-sftime 137s r-cran-shiny r-cran-sourcetools r-cran-sp r-cran-spacetime r-cran-spatstat 137s r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom 137s r-cran-spatstat.linnet r-cran-spatstat.model r-cran-spatstat.random 137s r-cran-spatstat.sparse r-cran-spatstat.univar r-cran-spatstat.utils 137s r-cran-stars r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 137s r-cran-systemfonts r-cran-tensor r-cran-terra r-cran-testthat r-cran-tibble 137s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tweenr r-cran-units 137s r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-waldo 137s r-cran-withr r-cran-wk r-cran-xfun r-cran-xtable r-cran-xts r-cran-yaml 137s r-cran-zoo unixodbc-common unzip x11-common xdg-utils zip 137s 0 upgraded, 292 newly installed, 0 to remove and 0 not upgraded. 137s Need to get 297 MB of archives. 137s After this operation, 779 MB of additional disk space will be used. 137s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 137s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 137s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB] 137s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB] 137s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB] 137s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 137s Get:7 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 137s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 137s Get:9 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-data all 3.12.1+dfsg-1 [278 kB] 137s Get:10 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-plugins amd64 3.12.1+dfsg-1 [26.8 kB] 137s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 javascript-common all 12+nmu1 [4828 B] 137s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libabsl20260107 amd64 20260107.0-0ubuntu2 [587 kB] 137s Get:13 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.5-1 [22.5 kB] 137s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libaom3 amd64 3.13.1-2 [1970 kB] 137s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 137s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-11ubuntu1 [939 kB] 137s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 138s Get:18 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarpack2t64 amd64 3.9.1-6 [108 kB] 138s Get:19 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsuperlu7 amd64 7.0.1+dfsg1-2 [186 kB] 138s Get:20 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarmadillo15 amd64 1:15.2.1+dfsg-2 [109 kB] 138s Get:21 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdav1d7 amd64 1.5.3-1 [626 kB] 138s Get:22 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgav1-2 amd64 0.20.0-2build1 [402 kB] 138s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 138s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 138s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libyuv0 amd64 0.0.1922.20260106-1 [184 kB] 138s Get:26 http://ftpmaster.internal/ubuntu resolute/universe amd64 libavif16 amd64 1.3.0-1ubuntu3 [117 kB] 138s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libsnappy1v5 amd64 1.2.2-2 [30.8 kB] 138s Get:28 http://ftpmaster.internal/ubuntu resolute/universe amd64 libblosc1 amd64 1.21.5+ds-2 [35.8 kB] 138s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 138s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB] 138s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B] 138s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 138s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 138s Get:34 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcfitsio10t64 amd64 4.6.3-1 [549 kB] 138s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB] 138s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libde265-0 amd64 1.0.16-1build1 [172 kB] 138s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 138s Get:38 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfyba0t64 amd64 4.1.1-11build2 [120 kB] 138s Get:39 http://ftpmaster.internal/ubuntu resolute/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [23.5 kB] 138s Get:40 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfreexl1 amd64 2.0.0-1build3 [42.9 kB] 138s Get:41 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos3.14.1 amd64 3.14.1-2 [976 kB] 138s Get:42 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos-c1t64 amd64 3.14.1-2 [116 kB] 138s Get:43 http://ftpmaster.internal/ubuntu resolute/universe amd64 proj-data all 9.7.1-1 [7950 kB] 138s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 138s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 138s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 138s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 138s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 138s Get:49 http://ftpmaster.internal/ubuntu resolute/universe amd64 libproj25 amd64 9.7.1-1 [1499 kB] 138s Get:50 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeotiff5 amd64 1.7.4-1 [60.2 kB] 138s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libgif7 amd64 5.2.2-1ubuntu3 [36.0 kB] 138s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.5-1 [17.9 kB] 138s Get:53 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf4-0 amd64 4.3.1-2 [318 kB] 138s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.6+repack-2 [1433 kB] 139s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-aomdec amd64 1.21.2-1 [14.2 kB] 139s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-libde265 amd64 1.21.2-1 [9978 B] 139s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif1 amd64 1.21.2-1 [544 kB] 139s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwy1t64 amd64 1.3.0-2 [768 kB] 139s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.17-1 [170 kB] 139s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libjxl0.11 amd64 0.11.1-6ubuntu1 [1122 kB] 139s Get:61 http://ftpmaster.internal/ubuntu resolute/universe amd64 liburiparser1 amd64 0.9.8+dfsg-2 [46.8 kB] 139s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlbase1t64 amd64 1.3.0-13 [51.7 kB] 139s Get:63 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmldom1t64 amd64 1.3.0-13 [156 kB] 139s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlengine1t64 amd64 1.3.0-13 [74.1 kB] 139s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-11ubuntu1 [151 kB] 139s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmuparser2v5 amd64 2.3.4-2 [143 kB] 139s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 mysql-common all 5.8+1.1.1ubuntu2 [7002 B] 139s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libmysqlclient24 amd64 8.4.8-0ubuntu1 [1258 kB] 139s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.6+repack-2 [59.9 kB] 139s Get:70 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnetcdf22 amd64 1:4.9.3-1build1 [561 kB] 139s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libltdl7 amd64 2.5.4-9 [43.7 kB] 139s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbc2 amd64 2.3.14-1 [160 kB] 139s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 unixodbc-common all 2.3.14-1 [8792 B] 139s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbcinst2 amd64 2.3.14-1 [32.0 kB] 139s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.4-1 [188 kB] 139s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpgmepp6t64 amd64 1.24.2-3ubuntu2 [124 kB] 139s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libpoppler147 amd64 25.03.0-11.1 [1224 kB] 139s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 libpq5 amd64 18.1-2 [155 kB] 139s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-8 [197 kB] 139s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 librttopo1 amd64 1.1.0-4 [205 kB] 139s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 libspatialite8t64 amd64 5.1.0-3ubuntu1 [1927 kB] 139s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3build2 [991 kB] 139s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgdal38 amd64 3.12.1+dfsg-1 [11.4 MB] 140s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 140s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.1-1 [519 kB] 140s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 140s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB] 140s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 140s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB] 140s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 140s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-d3 all 3.5.17-4build1 [136 kB] 140s Get:92 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 140s Get:93 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 140s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 140s Get:95 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 140s Get:96 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 140s Get:97 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B] 140s Get:98 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 140s Get:99 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB] 140s Get:100 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB] 140s Get:101 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-prettify all 2015.12.04+dfsg-2 [41.3 kB] 140s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 liblua5.4-0 amd64 5.4.8-1 [174 kB] 140s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB] 140s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB] 140s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB] 140s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB] 140s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB] 140s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB] 140s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB] 140s Get:110 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1 [16.4 kB] 140s Get:111 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1036 kB] 140s Get:112 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 140s Get:113 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 140s Get:114 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 140s Get:115 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-data all 2.2.28-8 [19.3 kB] 140s Get:116 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-0 amd64 2.2.28-8 [54.6 kB] 140s Get:117 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB] 140s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 140s Get:119 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 140s Get:120 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 140s Get:121 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 140s Get:122 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc amd64 3.1.11.1+ds-4 [27.2 MB] 142s Get:123 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu2 [178 kB] 142s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB] 142s Get:125 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 142s Get:126 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB] 143s Get:127 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-abind all 1.4-8-1build1 [67.0 kB] 143s Get:128 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 143s Get:129 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-generics all 0.1.4-1 [84.0 kB] 143s Get:130 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 143s Get:131 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB] 144s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 144s Get:133 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 144s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 144s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 144s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB] 144s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 144s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fansi amd64 1.0.6-2 [626 kB] 144s Get:139 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 144s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 144s Get:141 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 144s Get:142 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 144s Get:143 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 144s Get:144 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 144s Get:145 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB] 144s Get:146 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 144s Get:147 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 144s Get:148 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-e1071 amd64 1.7-17-1 [579 kB] 144s Get:149 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-kernsmooth amd64 2.23-26-1build1 [93.6 kB] 144s Get:150 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-classint amd64 0.4-11+dfsg-1 [108 kB] 144s Get:151 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbi all 1.2.3-1build1 [855 kB] 144s Get:152 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.21-2 [84.4 kB] 144s Get:153 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 144s Get:154 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB] 144s Get:155 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-wk amd64 0.9.4-1 [1791 kB] 144s Get:156 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s2 amd64 1.1.9-1build1 [1815 kB] 144s Get:157 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-units amd64 0.8-7+dfsg-2 [300 kB] 145s Get:158 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sf amd64 1.0-19+dfsg-2build2 [3298 kB] 145s Get:159 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-areal all 0.1.8+dfsg-2 [1004 kB] 145s Get:160 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 145s Get:161 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 145s Get:162 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-base64enc amd64 0.1-3-3build1 [28.5 kB] 145s Get:163 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bdsmatrix amd64 1.3-7-1 [299 kB] 145s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 145s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 145s Get:166 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 145s Get:167 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB] 145s Get:168 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 145s Get:169 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB] 145s Get:170 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 145s Get:171 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-memoise all 2.0.1-1build1 [54.5 kB] 145s Get:172 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 145s Get:173 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 145s Get:174 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rappdirs amd64 0.3.3-1build1 [49.3 kB] 145s Get:175 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 145s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB] 145s Get:177 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cairo amd64 1.6-2-1 [88.8 kB] 145s Get:178 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB] 145s Get:179 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 145s Get:180 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 145s Get:181 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cftime all 1.7.2-1 [918 kB] 145s Get:182 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cluster amd64 2.1.8.1-1 [579 kB] 145s Get:183 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-clue amd64 0.3-66-1 [968 kB] 145s Get:184 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-codetools all 0.2-20-1build1 [91.1 kB] 145s Get:185 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-collapse amd64 2.1.0-1 [3485 kB] 146s Get:186 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB] 146s Get:187 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lazyeval amd64 0.2.2-1build2 [146 kB] 146s Get:188 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rex all 1.2.1-1build1 [126 kB] 146s Get:189 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-curl amd64 7.0.0+dfsg-1 [202 kB] 146s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 146s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 146s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 146s Get:193 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 146s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB] 146s Get:195 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cpp11 all 0.5.3-1 [242 kB] 146s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cubelyr all 1.0.2-1 [347 kB] 146s Get:197 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 146s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 146s Get:199 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-diffobj amd64 0.3.5-1build1 [1156 kB] 146s Get:200 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 146s Get:201 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lattice amd64 0.22-7-1 [1367 kB] 146s Get:202 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sp amd64 1:2.2-0+dfsg-1 [1444 kB] 146s Get:203 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-terra amd64 1.8-70-1build2 [4344 kB] 146s Get:204 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-raster amd64 3.6-32-1 [3186 kB] 147s Get:205 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-exactextractr amd64 0.10.0-1build2 [578 kB] 147s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 147s Get:207 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB] 147s Get:208 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 147s Get:209 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 147s Get:210 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-globals all 0.18.0-1 [158 kB] 147s Get:211 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-listenv all 0.10.0+dfsg-1 [113 kB] 147s Get:212 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-parallelly amd64 1.42.0-1 [540 kB] 147s Get:213 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 147s Get:214 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future.apply all 1.11.3+dfsg-1 [175 kB] 147s Get:215 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 147s Get:216 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 147s Get:217 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-nlme amd64 3.1.168-1 [2320 kB] 148s Get:218 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrix amd64 1.7-4-1 [4220 kB] 148s Get:219 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mgcv amd64 1.9-4-1 [3556 kB] 148s Get:220 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 148s Get:221 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 148s Get:222 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 148s Get:223 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB] 148s Get:224 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 149s Get:225 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tweenr amd64 2.0.3-1 [410 kB] 149s Get:226 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB] 149s Get:227 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-systemfonts amd64 1.2.1-1 [347 kB] 149s Get:228 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 149s Get:229 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggforce amd64 0.4.2-1 [1777 kB] 149s Get:230 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringi amd64 1.8.4-1build2 [908 kB] 149s Get:231 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 149s Get:232 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggthemes all 5.2.0-1 [760 kB] 149s Get:233 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-goftest amd64 1.2-3-1build1 [60.5 kB] 149s Get:234 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gridextra all 2.3-3build2 [1032 kB] 149s Get:235 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-zoo amd64 1.8-15-1 [1025 kB] 149s Get:236 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sftime all 0.2-0-6 [168 kB] 149s Get:237 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xts amd64 0.14.1-1 [1198 kB] 149s Get:238 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-intervals amd64 0.15.5-1 [602 kB] 150s Get:239 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spacetime all 1.3-3-2 [2780 kB] 150s Get:240 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stars all 0.6-8-1 [4414 kB] 150s Get:241 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gstat amd64 2.1-3-2 [2334 kB] 150s Get:242 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB] 150s Get:243 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 150s Get:244 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 150s Get:245 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 150s Get:246 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 150s Get:247 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 151s Get:248 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 151s Get:249 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lmtest amd64 0.9.40-1build1 [400 kB] 151s Get:250 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lwgeom amd64 0.2-14-1 [463 kB] 151s Get:251 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-maps amd64 3.4.2.1-1 [2352 kB] 151s Get:252 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mapdata amd64 2.3.1-1 [23.5 MB] 151s Get:253 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-misctools all 0.6-28-1 [99.9 kB] 151s Get:254 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sandwich all 3.1-1-1 [1483 kB] 151s Get:255 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-maxlik all 1.5-2.2-1 [1115 kB] 151s Get:256 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rnetcdf amd64 2.9-2-1 [254 kB] 151s Get:257 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 151s Get:258 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ncmeta all 0.4.0-1 [362 kB] 152s Get:259 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ncdfgeom all 1.1.6+dfsg-1 [4124 kB] 152s Get:260 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 152s Get:261 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pcict amd64 0.5-4.4-1 [94.4 kB] 152s Get:262 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgbuild all 1.4.8-1 [219 kB] 152s Get:263 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rprojroot all 2.1.1-1 [131 kB] 152s Get:264 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgload all 1.4.1-1 [252 kB] 152s Get:265 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rbibutils amd64 2.3-1 [1023 kB] 152s Get:266 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rdpack all 2.6.3-1 [636 kB] 152s Get:267 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plm all 2.6-7-1 [1823 kB] 152s Get:268 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-praise all 1.0.0-4build2 [20.9 kB] 152s Get:269 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-randomforest amd64 4.7-1.2-1 [216 kB] 152s Get:270 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tinytex all 0.58-1 [148 kB] 152s Get:271 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-modernizr all 3.13.0-0.1build1 [100 kB] 152s Get:272 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xtable all 1:1.8-4-2build1 [691 kB] 152s Get:273 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 152s Get:274 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 152s Get:275 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 152s Get:276 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 152s Get:277 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 152s Get:278 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 152s Get:279 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.utils amd64 3.1-3-1 [387 kB] 152s Get:280 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.data all 3.1-6-1 [4153 kB] 152s Get:281 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.univar amd64 3.1-2-1 [315 kB] 153s Get:282 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.geom amd64 3.3-6-1 [3968 kB] 153s Get:283 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.random amd64 3.3-3-1 [1177 kB] 153s Get:284 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tensor all 1.5-4build1 [16.3 kB] 153s Get:285 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.sparse amd64 3.1-0-1 [221 kB] 153s Get:286 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.explore amd64 3.3-4-1 [3347 kB] 153s Get:287 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.model amd64 3.3-4-1 [3397 kB] 153s Get:288 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.linnet amd64 3.2-5-1 [1509 kB] 153s Get:289 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat amd64 3.3-1-1 [4121 kB] 153s Get:290 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-waldo all 0.6.2-1 [153 kB] 153s Get:291 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 153s Get:292 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 154s Preconfiguring packages ... 154s Fetched 297 MB in 16s (18.1 MB/s) 154s Selecting previously unselected package fonts-dejavu-mono. 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124211 files and directories currently installed.) 154s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8build1_all.deb ... 154s Unpacking fonts-dejavu-mono (2.37-8build1) ... 154s Selecting previously unselected package fonts-dejavu-core. 154s Preparing to unpack .../001-fonts-dejavu-core_2.37-8build1_all.deb ... 154s Unpacking fonts-dejavu-core (2.37-8build1) ... 154s Selecting previously unselected package fontconfig-config. 154s Preparing to unpack .../002-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ... 154s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 154s Selecting previously unselected package libfontconfig1:amd64. 154s Preparing to unpack .../003-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ... 154s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ... 154s Selecting previously unselected package fontconfig. 154s Preparing to unpack .../004-fontconfig_2.17.1-3ubuntu1_amd64.deb ... 154s Unpacking fontconfig (2.17.1-3ubuntu1) ... 154s Selecting previously unselected package fonts-font-awesome. 154s Preparing to unpack .../005-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ... 154s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 154s Selecting previously unselected package fonts-glyphicons-halflings. 154s Preparing to unpack .../006-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 154s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 154s Selecting previously unselected package fonts-mathjax. 154s Preparing to unpack .../007-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ... 154s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ... 154s Selecting previously unselected package gdal-data. 154s Preparing to unpack .../008-gdal-data_3.12.1+dfsg-1_all.deb ... 154s Unpacking gdal-data (3.12.1+dfsg-1) ... 154s Selecting previously unselected package gdal-plugins:amd64. 154s Preparing to unpack .../009-gdal-plugins_3.12.1+dfsg-1_amd64.deb ... 154s Unpacking gdal-plugins:amd64 (3.12.1+dfsg-1) ... 154s Selecting previously unselected package javascript-common. 154s Preparing to unpack .../010-javascript-common_12+nmu1_all.deb ... 154s Unpacking javascript-common (12+nmu1) ... 154s Selecting previously unselected package libabsl20260107:amd64. 154s Preparing to unpack .../011-libabsl20260107_20260107.0-0ubuntu2_amd64.deb ... 154s Unpacking libabsl20260107:amd64 (20260107.0-0ubuntu2) ... 154s Selecting previously unselected package libaec0:amd64. 154s Preparing to unpack .../012-libaec0_1.1.5-1_amd64.deb ... 154s Unpacking libaec0:amd64 (1.1.5-1) ... 154s Selecting previously unselected package libaom3:amd64. 154s Preparing to unpack .../013-libaom3_3.13.1-2_amd64.deb ... 154s Unpacking libaom3:amd64 (3.13.1-2) ... 154s Selecting previously unselected package libblas3:amd64. 154s Preparing to unpack .../014-libblas3_3.12.1-7ubuntu1_amd64.deb ... 154s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ... 154s Selecting previously unselected package libgfortran5:amd64. 154s Preparing to unpack .../015-libgfortran5_15.2.0-11ubuntu1_amd64.deb ... 154s Unpacking libgfortran5:amd64 (15.2.0-11ubuntu1) ... 154s Selecting previously unselected package liblapack3:amd64. 154s Preparing to unpack .../016-liblapack3_3.12.1-7ubuntu1_amd64.deb ... 154s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ... 154s Selecting previously unselected package libarpack2t64:amd64. 154s Preparing to unpack .../017-libarpack2t64_3.9.1-6_amd64.deb ... 154s Unpacking libarpack2t64:amd64 (3.9.1-6) ... 154s Selecting previously unselected package libsuperlu7:amd64. 154s Preparing to unpack .../018-libsuperlu7_7.0.1+dfsg1-2_amd64.deb ... 154s Unpacking libsuperlu7:amd64 (7.0.1+dfsg1-2) ... 154s Selecting previously unselected package libarmadillo15. 154s Preparing to unpack .../019-libarmadillo15_1%3a15.2.1+dfsg-2_amd64.deb ... 154s Unpacking libarmadillo15 (1:15.2.1+dfsg-2) ... 154s Selecting previously unselected package libdav1d7:amd64. 154s Preparing to unpack .../020-libdav1d7_1.5.3-1_amd64.deb ... 154s Unpacking libdav1d7:amd64 (1.5.3-1) ... 154s Selecting previously unselected package libgav1-2:amd64. 154s Preparing to unpack .../021-libgav1-2_0.20.0-2build1_amd64.deb ... 154s Unpacking libgav1-2:amd64 (0.20.0-2build1) ... 154s Selecting previously unselected package libjpeg-turbo8:amd64. 154s Preparing to unpack .../022-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 154s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 154s Selecting previously unselected package libjpeg8:amd64. 154s Preparing to unpack .../023-libjpeg8_8c-2ubuntu11_amd64.deb ... 154s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 154s Selecting previously unselected package libyuv0:amd64. 154s Preparing to unpack .../024-libyuv0_0.0.1922.20260106-1_amd64.deb ... 154s Unpacking libyuv0:amd64 (0.0.1922.20260106-1) ... 154s Selecting previously unselected package libavif16:amd64. 154s Preparing to unpack .../025-libavif16_1.3.0-1ubuntu3_amd64.deb ... 154s Unpacking libavif16:amd64 (1.3.0-1ubuntu3) ... 154s Selecting previously unselected package libsnappy1v5:amd64. 154s Preparing to unpack .../026-libsnappy1v5_1.2.2-2_amd64.deb ... 154s Unpacking libsnappy1v5:amd64 (1.2.2-2) ... 155s Selecting previously unselected package libblosc1:amd64. 155s Preparing to unpack .../027-libblosc1_1.21.5+ds-2_amd64.deb ... 155s Unpacking libblosc1:amd64 (1.21.5+ds-2) ... 155s Selecting previously unselected package libpixman-1-0:amd64. 155s Preparing to unpack .../028-libpixman-1-0_0.46.4-1_amd64.deb ... 155s Unpacking libpixman-1-0:amd64 (0.46.4-1) ... 155s Selecting previously unselected package libxcb-render0:amd64. 155s Preparing to unpack .../029-libxcb-render0_1.17.0-2ubuntu1_amd64.deb ... 155s Unpacking libxcb-render0:amd64 (1.17.0-2ubuntu1) ... 155s Selecting previously unselected package libxcb-shm0:amd64. 155s Preparing to unpack .../030-libxcb-shm0_1.17.0-2ubuntu1_amd64.deb ... 155s Unpacking libxcb-shm0:amd64 (1.17.0-2ubuntu1) ... 155s Selecting previously unselected package libxrender1:amd64. 155s Preparing to unpack .../031-libxrender1_1%3a0.9.12-1_amd64.deb ... 155s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 155s Selecting previously unselected package libcairo2:amd64. 155s Preparing to unpack .../032-libcairo2_1.18.4-3_amd64.deb ... 155s Unpacking libcairo2:amd64 (1.18.4-3) ... 155s Selecting previously unselected package libcfitsio10t64:amd64. 155s Preparing to unpack .../033-libcfitsio10t64_4.6.3-1_amd64.deb ... 155s Unpacking libcfitsio10t64:amd64 (4.6.3-1) ... 155s Selecting previously unselected package libdatrie1:amd64. 155s Preparing to unpack .../034-libdatrie1_0.2.14-1_amd64.deb ... 155s Unpacking libdatrie1:amd64 (0.2.14-1) ... 155s Selecting previously unselected package libde265-0:amd64. 155s Preparing to unpack .../035-libde265-0_1.0.16-1build1_amd64.deb ... 155s Unpacking libde265-0:amd64 (1.0.16-1build1) ... 155s Selecting previously unselected package libdeflate0:amd64. 155s Preparing to unpack .../036-libdeflate0_1.23-2_amd64.deb ... 155s Unpacking libdeflate0:amd64 (1.23-2) ... 155s Selecting previously unselected package libfyba0t64:amd64. 155s Preparing to unpack .../037-libfyba0t64_4.1.1-11build2_amd64.deb ... 155s Unpacking libfyba0t64:amd64 (4.1.1-11build2) ... 155s Selecting previously unselected package libminizip1t64:amd64. 155s Preparing to unpack .../038-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ... 155s Unpacking libminizip1t64:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 155s Selecting previously unselected package libfreexl1:amd64. 155s Preparing to unpack .../039-libfreexl1_2.0.0-1build3_amd64.deb ... 155s Unpacking libfreexl1:amd64 (2.0.0-1build3) ... 155s Selecting previously unselected package libgeos3.14.1:amd64. 155s Preparing to unpack .../040-libgeos3.14.1_3.14.1-2_amd64.deb ... 155s Unpacking libgeos3.14.1:amd64 (3.14.1-2) ... 155s Selecting previously unselected package libgeos-c1t64:amd64. 155s Preparing to unpack .../041-libgeos-c1t64_3.14.1-2_amd64.deb ... 155s Unpacking libgeos-c1t64:amd64 (3.14.1-2) ... 155s Selecting previously unselected package proj-data. 155s Preparing to unpack .../042-proj-data_9.7.1-1_all.deb ... 155s Unpacking proj-data (9.7.1-1) ... 155s Selecting previously unselected package libjbig0:amd64. 155s Preparing to unpack .../043-libjbig0_2.1-6.1ubuntu3_amd64.deb ... 155s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ... 155s Selecting previously unselected package liblerc4:amd64. 155s Preparing to unpack .../044-liblerc4_4.0.0+ds-5ubuntu2_amd64.deb ... 155s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 155s Selecting previously unselected package libsharpyuv0:amd64. 155s Preparing to unpack .../045-libsharpyuv0_1.5.0-0.1build1_amd64.deb ... 155s Unpacking libsharpyuv0:amd64 (1.5.0-0.1build1) ... 155s Selecting previously unselected package libwebp7:amd64. 155s Preparing to unpack .../046-libwebp7_1.5.0-0.1build1_amd64.deb ... 155s Unpacking libwebp7:amd64 (1.5.0-0.1build1) ... 155s Selecting previously unselected package libtiff6:amd64. 155s Preparing to unpack .../047-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 155s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 155s Selecting previously unselected package libproj25:amd64. 155s Preparing to unpack .../048-libproj25_9.7.1-1_amd64.deb ... 155s Unpacking libproj25:amd64 (9.7.1-1) ... 155s Selecting previously unselected package libgeotiff5:amd64. 155s Preparing to unpack .../049-libgeotiff5_1.7.4-1_amd64.deb ... 155s Unpacking libgeotiff5:amd64 (1.7.4-1) ... 155s Selecting previously unselected package libgif7:amd64. 155s Preparing to unpack .../050-libgif7_5.2.2-1ubuntu3_amd64.deb ... 155s Unpacking libgif7:amd64 (5.2.2-1ubuntu3) ... 155s Selecting previously unselected package libsz2:amd64. 155s Preparing to unpack .../051-libsz2_1.1.5-1_amd64.deb ... 155s Unpacking libsz2:amd64 (1.1.5-1) ... 155s Selecting previously unselected package libhdf4-0:amd64. 155s Preparing to unpack .../052-libhdf4-0_4.3.1-2_amd64.deb ... 155s Unpacking libhdf4-0:amd64 (4.3.1-2) ... 155s Selecting previously unselected package libhdf5-310:amd64. 155s Preparing to unpack .../053-libhdf5-310_1.14.6+repack-2_amd64.deb ... 155s Unpacking libhdf5-310:amd64 (1.14.6+repack-2) ... 155s Selecting previously unselected package libheif-plugin-aomdec:amd64. 155s Preparing to unpack .../054-libheif-plugin-aomdec_1.21.2-1_amd64.deb ... 155s Unpacking libheif-plugin-aomdec:amd64 (1.21.2-1) ... 155s Selecting previously unselected 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package libpaper2:amd64. 156s Preparing to unpack .../107-libpaper2_2.2.5-0.3build1_amd64.deb ... 156s Unpacking libpaper2:amd64 (2.2.5-0.3build1) ... 156s Selecting previously unselected package libpaper-utils. 156s Preparing to unpack .../108-libpaper-utils_2.2.5-0.3build1_amd64.deb ... 156s Unpacking libpaper-utils (2.2.5-0.3build1) ... 156s Selecting previously unselected package libsm6:amd64. 156s Preparing to unpack .../109-libsm6_2%3a1.2.6-1_amd64.deb ... 156s Unpacking libsm6:amd64 (2:1.2.6-1) ... 156s Selecting previously unselected package libtcl8.6:amd64. 156s Preparing to unpack .../110-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... 156s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... 156s Selecting previously unselected package libxft2:amd64. 156s Preparing to unpack .../111-libxft2_2.3.6-1build2_amd64.deb ... 156s Unpacking libxft2:amd64 (2.3.6-1build2) ... 156s Selecting previously unselected package libxss1:amd64. 156s Preparing to unpack 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(3.0.2+dfsg-1) ... 157s Selecting previously unselected package r-cran-tidyselect. 157s Preparing to unpack .../141-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 157s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 157s Selecting previously unselected package r-cran-dplyr. 157s Preparing to unpack .../142-r-cran-dplyr_1.1.4-4_amd64.deb ... 157s Unpacking r-cran-dplyr (1.1.4-4) ... 158s Selecting previously unselected package r-cran-purrr. 158s Preparing to unpack .../143-r-cran-purrr_1.0.4-1_amd64.deb ... 158s Unpacking r-cran-purrr (1.0.4-1) ... 158s Selecting previously unselected package r-cran-mass. 158s Preparing to unpack .../144-r-cran-mass_7.3-65-1_amd64.deb ... 158s Unpacking r-cran-mass (7.3-65-1) ... 158s Selecting previously unselected package r-cran-class. 158s Preparing to unpack .../145-r-cran-class_7.3-23-1_amd64.deb ... 158s Unpacking r-cran-class (7.3-23-1) ... 158s Selecting previously unselected package r-cran-proxy. 158s Preparing to unpack .../146-r-cran-proxy_0.4-27-1_amd64.deb ... 158s Unpacking r-cran-proxy (0.4-27-1) ... 158s Selecting previously unselected package r-cran-e1071. 158s Preparing to unpack .../147-r-cran-e1071_1.7-17-1_amd64.deb ... 158s Unpacking r-cran-e1071 (1.7-17-1) ... 158s Selecting previously unselected package r-cran-kernsmooth. 158s Preparing to unpack .../148-r-cran-kernsmooth_2.23-26-1build1_amd64.deb ... 158s Unpacking r-cran-kernsmooth (2.23-26-1build1) ... 158s Selecting previously unselected package r-cran-classint. 158s Preparing to unpack .../149-r-cran-classint_0.4-11+dfsg-1_amd64.deb ... 158s Unpacking r-cran-classint (0.4-11+dfsg-1) ... 158s Selecting previously unselected package r-cran-dbi. 158s Preparing to unpack .../150-r-cran-dbi_1.2.3-1build1_all.deb ... 158s Unpacking r-cran-dbi (1.2.3-1build1) ... 158s Selecting previously unselected package r-cran-littler. 158s Preparing to unpack .../151-r-cran-littler_0.3.21-2_amd64.deb ... 158s Unpacking r-cran-littler (0.3.21-2) ... 158s Selecting previously unselected package r-cran-pkgkitten. 158s Preparing to unpack .../152-r-cran-pkgkitten_0.2.4-1_all.deb ... 158s Unpacking r-cran-pkgkitten (0.2.4-1) ... 158s Selecting previously unselected package r-cran-rcpp. 158s Preparing to unpack .../153-r-cran-rcpp_1.1.0-1_amd64.deb ... 158s Unpacking r-cran-rcpp (1.1.0-1) ... 158s Selecting previously unselected package r-cran-wk. 158s Preparing to unpack .../154-r-cran-wk_0.9.4-1_amd64.deb ... 158s Unpacking r-cran-wk (0.9.4-1) ... 158s Selecting previously unselected package r-cran-s2. 158s Preparing to unpack .../155-r-cran-s2_1.1.9-1build1_amd64.deb ... 158s Unpacking r-cran-s2 (1.1.9-1build1) ... 158s Selecting previously unselected package r-cran-units. 158s Preparing to unpack .../156-r-cran-units_0.8-7+dfsg-2_amd64.deb ... 158s Unpacking r-cran-units (0.8-7+dfsg-2) ... 158s Selecting previously unselected package r-cran-sf. 158s Preparing to unpack .../157-r-cran-sf_1.0-19+dfsg-2build2_amd64.deb ... 158s Unpacking r-cran-sf (1.0-19+dfsg-2build2) ... 158s Selecting previously unselected package r-cran-areal. 158s Preparing to unpack .../158-r-cran-areal_0.1.8+dfsg-2_all.deb ... 158s Unpacking r-cran-areal (0.1.8+dfsg-2) ... 158s Selecting previously unselected package r-cran-sys. 158s Preparing to unpack .../159-r-cran-sys_3.4.3-1_amd64.deb ... 158s Unpacking r-cran-sys (3.4.3-1) ... 158s Selecting previously unselected package r-cran-askpass. 158s Preparing to unpack .../160-r-cran-askpass_1.2.1-1_amd64.deb ... 158s Unpacking r-cran-askpass (1.2.1-1) ... 158s Selecting previously unselected package r-cran-base64enc. 158s Preparing to unpack .../161-r-cran-base64enc_0.1-3-3build1_amd64.deb ... 158s Unpacking r-cran-base64enc (0.1-3-3build1) ... 158s Selecting previously unselected package r-cran-bdsmatrix. 158s Preparing to unpack .../162-r-cran-bdsmatrix_1.3-7-1_amd64.deb ... 158s Unpacking r-cran-bdsmatrix (1.3-7-1) ... 158s Selecting previously unselected package r-cran-brio. 158s Preparing to unpack .../163-r-cran-brio_1.1.5-1_amd64.deb ... 158s Unpacking r-cran-brio (1.1.5-1) ... 158s Selecting previously unselected package r-cran-fastmap. 158s Preparing to unpack .../164-r-cran-fastmap_1.2.0-1_amd64.deb ... 158s Unpacking r-cran-fastmap (1.2.0-1) ... 158s Selecting previously unselected package r-cran-cachem. 158s Preparing to unpack .../165-r-cran-cachem_1.1.0-1_amd64.deb ... 158s Unpacking r-cran-cachem (1.1.0-1) ... 158s Selecting previously unselected package r-cran-digest. 158s Preparing to unpack .../166-r-cran-digest_0.6.39-1_amd64.deb ... 158s Unpacking r-cran-digest (0.6.39-1) ... 158s Selecting previously unselected package r-cran-htmltools. 158s Preparing to unpack .../167-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 158s Unpacking r-cran-htmltools (0.5.8.1-1) ... 158s Selecting previously unselected package r-cran-jquerylib. 158s Preparing to unpack .../168-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ... 158s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ... 158s Selecting previously unselected package r-cran-jsonlite. 158s Preparing to unpack .../169-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 158s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 158s Selecting previously unselected package r-cran-memoise. 158s Preparing to unpack .../170-r-cran-memoise_2.0.1-1build1_all.deb ... 158s Unpacking r-cran-memoise (2.0.1-1build1) ... 158s Selecting previously unselected package r-cran-mime. 158s Preparing to unpack .../171-r-cran-mime_0.12-2_amd64.deb ... 158s Unpacking r-cran-mime (0.12-2) ... 158s Selecting previously unselected package r-cran-fs. 158s Preparing to unpack .../172-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 158s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 158s Selecting previously unselected package r-cran-rappdirs. 158s Preparing to unpack .../173-r-cran-rappdirs_0.3.3-1build1_amd64.deb ... 158s Unpacking r-cran-rappdirs (0.3.3-1build1) ... 158s Selecting previously unselected package r-cran-sass. 158s Preparing to unpack .../174-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 158s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 158s Selecting previously unselected package r-cran-bslib. 158s Preparing to unpack .../175-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ... 158s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ... 158s Selecting previously unselected package r-cran-cairo. 158s Preparing to unpack .../176-r-cran-cairo_1.6-2-1_amd64.deb ... 158s Unpacking r-cran-cairo (1.6-2-1) ... 158s Selecting previously unselected package r-cran-ps. 158s Preparing to unpack .../177-r-cran-ps_1.9.0-1_amd64.deb ... 158s Unpacking r-cran-ps (1.9.0-1) ... 158s Selecting previously unselected package r-cran-processx. 158s Preparing to unpack .../178-r-cran-processx_3.8.6-1_amd64.deb ... 158s Unpacking r-cran-processx (3.8.6-1) ... 158s Selecting previously unselected package r-cran-callr. 158s Preparing to unpack .../179-r-cran-callr_3.7.6-1_all.deb ... 158s Unpacking r-cran-callr (3.7.6-1) ... 158s Selecting previously unselected package r-cran-cftime. 158s Preparing to unpack .../180-r-cran-cftime_1.7.2-1_all.deb ... 158s Unpacking r-cran-cftime (1.7.2-1) ... 158s Selecting previously unselected package r-cran-cluster. 158s Preparing to unpack .../181-r-cran-cluster_2.1.8.1-1_amd64.deb ... 158s Unpacking r-cran-cluster (2.1.8.1-1) ... 158s Selecting previously unselected package r-cran-clue. 158s Preparing to unpack .../182-r-cran-clue_0.3-66-1_amd64.deb ... 158s Unpacking r-cran-clue (0.3-66-1) ... 158s Selecting previously unselected package r-cran-codetools. 158s Preparing to unpack .../183-r-cran-codetools_0.2-20-1build1_all.deb ... 158s Unpacking r-cran-codetools (0.2-20-1build1) ... 158s Selecting previously unselected package r-cran-collapse. 158s Preparing to unpack .../184-r-cran-collapse_2.1.0-1_amd64.deb ... 158s Unpacking r-cran-collapse (2.1.0-1) ... 158s Selecting previously unselected package r-cran-commonmark. 158s Preparing to unpack .../185-r-cran-commonmark_1.9.5-1_amd64.deb ... 158s Unpacking r-cran-commonmark (1.9.5-1) ... 158s Selecting previously unselected package r-cran-lazyeval. 158s Preparing to unpack .../186-r-cran-lazyeval_0.2.2-1build2_amd64.deb ... 158s Unpacking r-cran-lazyeval (0.2.2-1build2) ... 158s Selecting previously unselected package r-cran-rex. 158s Preparing to unpack .../187-r-cran-rex_1.2.1-1build1_all.deb ... 158s Unpacking r-cran-rex (1.2.1-1build1) ... 159s Selecting previously unselected package r-cran-curl. 159s Preparing to unpack .../188-r-cran-curl_7.0.0+dfsg-1_amd64.deb ... 159s Unpacking r-cran-curl (7.0.0+dfsg-1) ... 159s Selecting previously unselected package r-cran-openssl. 159s Preparing to unpack .../189-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 159s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 159s Selecting previously unselected package r-cran-httr. 159s Preparing to unpack .../190-r-cran-httr_1.4.7+dfsg-1_all.deb ... 159s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 159s Selecting previously unselected package r-cran-crayon. 159s Preparing to unpack .../191-r-cran-crayon_1.5.3-1_all.deb ... 159s Unpacking r-cran-crayon (1.5.3-1) ... 159s Selecting previously unselected package r-cran-yaml. 159s Preparing to unpack .../192-r-cran-yaml_2.3.10-1_amd64.deb ... 159s Unpacking r-cran-yaml (2.3.10-1) ... 159s Selecting previously unselected package r-cran-covr. 159s Preparing to unpack .../193-r-cran-covr_3.6.4+dfsg-1_amd64.deb ... 159s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 159s Selecting previously unselected package r-cran-cpp11. 159s Preparing to unpack .../194-r-cran-cpp11_0.5.3-1_all.deb ... 159s Unpacking r-cran-cpp11 (0.5.3-1) ... 159s Selecting previously unselected package r-cran-cubelyr. 159s Preparing to unpack .../195-r-cran-cubelyr_1.0.2-1_all.deb ... 159s Unpacking r-cran-cubelyr (1.0.2-1) ... 159s Selecting previously unselected package r-cran-deldir. 159s Preparing to unpack .../196-r-cran-deldir_2.0-4-1build1_amd64.deb ... 159s Unpacking r-cran-deldir (2.0-4-1build1) ... 159s Selecting previously unselected package r-cran-desc. 159s Preparing to unpack .../197-r-cran-desc_1.4.3-1_all.deb ... 159s Unpacking r-cran-desc (1.4.3-1) ... 159s Selecting previously unselected package r-cran-diffobj. 159s Preparing to unpack .../198-r-cran-diffobj_0.3.5-1build1_amd64.deb ... 159s Unpacking r-cran-diffobj (0.3.5-1build1) ... 159s Selecting previously unselected package r-cran-evaluate. 159s Preparing to unpack .../199-r-cran-evaluate_1.0.3-1_all.deb ... 159s Unpacking r-cran-evaluate (1.0.3-1) ... 159s Selecting previously unselected package r-cran-lattice. 159s Preparing to unpack .../200-r-cran-lattice_0.22-7-1_amd64.deb ... 159s Unpacking r-cran-lattice (0.22-7-1) ... 159s Selecting previously unselected package r-cran-sp. 159s Preparing to unpack .../201-r-cran-sp_1%3a2.2-0+dfsg-1_amd64.deb ... 159s Unpacking r-cran-sp (1:2.2-0+dfsg-1) ... 159s Selecting previously unselected package r-cran-terra. 159s Preparing to unpack .../202-r-cran-terra_1.8-70-1build2_amd64.deb ... 159s Unpacking r-cran-terra (1.8-70-1build2) ... 159s Selecting previously unselected package r-cran-raster. 159s Preparing to unpack .../203-r-cran-raster_3.6-32-1_amd64.deb ... 159s Unpacking r-cran-raster (3.6-32-1) ... 159s Selecting previously unselected package r-cran-exactextractr. 159s Preparing to unpack .../204-r-cran-exactextractr_0.10.0-1build2_amd64.deb ... 159s Unpacking r-cran-exactextractr (0.10.0-1build2) ... 159s Selecting previously unselected package r-cran-farver. 159s Preparing to unpack .../205-r-cran-farver_2.1.2-1_amd64.deb ... 159s Unpacking r-cran-farver (2.1.2-1) ... 159s Selecting previously unselected package r-cran-fnn. 159s Preparing to unpack .../206-r-cran-fnn_1.1.4.1-1_amd64.deb ... 159s Unpacking r-cran-fnn (1.1.4.1-1) ... 159s Selecting previously unselected package r-cran-fontawesome. 159s Preparing to unpack .../207-r-cran-fontawesome_0.5.3-1_all.deb ... 159s Unpacking r-cran-fontawesome (0.5.3-1) ... 159s Selecting previously unselected package r-cran-formula. 159s Preparing to unpack .../208-r-cran-formula_1.2-5-1_all.deb ... 159s Unpacking r-cran-formula (1.2-5-1) ... 159s Selecting previously unselected package r-cran-globals. 159s Preparing to unpack .../209-r-cran-globals_0.18.0-1_all.deb ... 159s Unpacking r-cran-globals (0.18.0-1) ... 159s Selecting previously unselected package r-cran-listenv. 159s Preparing to unpack .../210-r-cran-listenv_0.10.0+dfsg-1_all.deb ... 159s Unpacking r-cran-listenv (0.10.0+dfsg-1) ... 159s Selecting previously unselected package r-cran-parallelly. 159s Preparing to unpack .../211-r-cran-parallelly_1.42.0-1_amd64.deb ... 159s Unpacking r-cran-parallelly (1.42.0-1) ... 159s Selecting previously unselected package r-cran-future. 159s Preparing to unpack .../212-r-cran-future_1.34.0+dfsg-1_all.deb ... 159s Unpacking r-cran-future (1.34.0+dfsg-1) ... 159s Selecting previously unselected package r-cran-future.apply. 159s Preparing to unpack .../213-r-cran-future.apply_1.11.3+dfsg-1_all.deb ... 159s Unpacking r-cran-future.apply (1.11.3+dfsg-1) ... 159s Selecting previously unselected package r-cran-gtable. 159s Preparing to unpack .../214-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 159s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 159s Selecting previously unselected package r-cran-isoband. 159s Preparing to unpack .../215-r-cran-isoband_0.2.7-1_amd64.deb ... 159s Unpacking r-cran-isoband (0.2.7-1) ... 159s Selecting previously unselected package r-cran-nlme. 159s Preparing to unpack .../216-r-cran-nlme_3.1.168-1_amd64.deb ... 159s Unpacking r-cran-nlme (3.1.168-1) ... 159s Selecting previously unselected package r-cran-matrix. 159s Preparing to unpack .../217-r-cran-matrix_1.7-4-1_amd64.deb ... 159s Unpacking r-cran-matrix (1.7-4-1) ... 159s Selecting previously unselected package r-cran-mgcv. 159s Preparing to unpack .../218-r-cran-mgcv_1.9-4-1_amd64.deb ... 159s Unpacking r-cran-mgcv (1.9-4-1) ... 159s Selecting previously unselected package r-cran-labeling. 159s Preparing to unpack .../219-r-cran-labeling_0.4.3-1_all.deb ... 159s Unpacking r-cran-labeling (0.4.3-1) ... 159s Selecting previously unselected package r-cran-rcolorbrewer. 159s Preparing to unpack .../220-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ... 159s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ... 159s Selecting previously unselected package r-cran-viridislite. 159s Preparing to unpack .../221-r-cran-viridislite_0.4.2-2_all.deb ... 159s Unpacking r-cran-viridislite (0.4.2-2) ... 159s Selecting previously unselected package r-cran-scales. 159s Preparing to unpack .../222-r-cran-scales_1.4.0-1_all.deb ... 159s Unpacking r-cran-scales (1.4.0-1) ... 159s Selecting previously unselected package r-cran-ggplot2. 159s Preparing to unpack .../223-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 159s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 159s Selecting previously unselected package r-cran-tweenr. 159s Preparing to unpack .../224-r-cran-tweenr_2.0.3-1_amd64.deb ... 159s Unpacking r-cran-tweenr (2.0.3-1) ... 159s Selecting previously unselected package r-cran-polyclip. 159s Preparing to unpack .../225-r-cran-polyclip_1.10-7-1_amd64.deb ... 159s Unpacking r-cran-polyclip (1.10-7-1) ... 159s Selecting previously unselected package r-cran-systemfonts. 159s Preparing to unpack .../226-r-cran-systemfonts_1.2.1-1_amd64.deb ... 159s Unpacking r-cran-systemfonts (1.2.1-1) ... 159s Selecting previously unselected package r-cran-rcppeigen. 159s Preparing to unpack .../227-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 159s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 159s Selecting previously unselected package r-cran-ggforce. 159s Preparing to unpack .../228-r-cran-ggforce_0.4.2-1_amd64.deb ... 159s Unpacking r-cran-ggforce (0.4.2-1) ... 159s Selecting previously unselected package r-cran-stringi. 159s Preparing to unpack .../229-r-cran-stringi_1.8.4-1build2_amd64.deb ... 159s Unpacking r-cran-stringi (1.8.4-1build2) ... 159s Selecting previously unselected package r-cran-stringr. 159s Preparing to unpack .../230-r-cran-stringr_1.5.1-1_all.deb ... 159s Unpacking r-cran-stringr (1.5.1-1) ... 159s Selecting previously unselected package r-cran-ggthemes. 159s Preparing to unpack .../231-r-cran-ggthemes_5.2.0-1_all.deb ... 159s Unpacking r-cran-ggthemes (5.2.0-1) ... 159s Selecting previously unselected package r-cran-goftest. 159s Preparing to unpack .../232-r-cran-goftest_1.2-3-1build1_amd64.deb ... 159s Unpacking r-cran-goftest (1.2-3-1build1) ... 160s Selecting previously unselected package r-cran-gridextra. 160s Preparing to unpack .../233-r-cran-gridextra_2.3-3build2_all.deb ... 160s Unpacking r-cran-gridextra (2.3-3build2) ... 160s Selecting previously unselected package r-cran-zoo. 160s Preparing to unpack .../234-r-cran-zoo_1.8-15-1_amd64.deb ... 160s Unpacking r-cran-zoo (1.8-15-1) ... 160s Selecting previously unselected package r-cran-sftime. 160s Preparing to unpack .../235-r-cran-sftime_0.2-0-6_all.deb ... 160s Unpacking r-cran-sftime (0.2-0-6) ... 160s Selecting previously unselected package r-cran-xts. 160s Preparing to unpack .../236-r-cran-xts_0.14.1-1_amd64.deb ... 160s Unpacking r-cran-xts (0.14.1-1) ... 160s Selecting previously unselected package r-cran-intervals. 160s Preparing to unpack .../237-r-cran-intervals_0.15.5-1_amd64.deb ... 160s Unpacking r-cran-intervals (0.15.5-1) ... 160s Selecting previously unselected package r-cran-spacetime. 160s Preparing to unpack .../238-r-cran-spacetime_1.3-3-2_all.deb ... 160s Unpacking r-cran-spacetime (1.3-3-2) ... 160s Selecting previously unselected package r-cran-stars. 160s Preparing to unpack .../239-r-cran-stars_0.6-8-1_all.deb ... 160s Unpacking r-cran-stars (0.6-8-1) ... 160s Selecting previously unselected package r-cran-gstat. 160s Preparing to unpack .../240-r-cran-gstat_2.1-3-2_amd64.deb ... 160s Unpacking r-cran-gstat (2.1-3-2) ... 160s Selecting previously unselected package r-cran-xfun. 160s Preparing to unpack .../241-r-cran-xfun_0.55+dfsg-1_amd64.deb ... 160s Unpacking r-cran-xfun (0.55+dfsg-1) ... 160s Selecting previously unselected package r-cran-highr. 160s Preparing to unpack .../242-r-cran-highr_0.11+dfsg-1_all.deb ... 160s Unpacking r-cran-highr (0.11+dfsg-1) ... 160s Selecting previously unselected package r-cran-later. 160s Preparing to unpack .../243-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 160s Unpacking r-cran-later (1.4.1+dfsg-1) ... 160s Selecting previously unselected package r-cran-promises. 160s Preparing to unpack .../244-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 160s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 160s Selecting previously unselected package r-cran-httpuv. 160s Preparing to unpack .../245-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 160s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 160s Selecting previously unselected package libjs-mathjax. 160s Preparing to unpack .../246-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ... 160s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ... 160s Selecting previously unselected package r-cran-knitr. 160s Preparing to unpack .../247-r-cran-knitr_1.51+dfsg-1_all.deb ... 160s Unpacking r-cran-knitr (1.51+dfsg-1) ... 160s Selecting previously unselected package r-cran-lmtest. 160s Preparing to unpack .../248-r-cran-lmtest_0.9.40-1build1_amd64.deb ... 160s Unpacking r-cran-lmtest (0.9.40-1build1) ... 160s Selecting previously unselected package r-cran-lwgeom. 160s Preparing to unpack .../249-r-cran-lwgeom_0.2-14-1_amd64.deb ... 160s Unpacking r-cran-lwgeom (0.2-14-1) ... 160s Selecting previously unselected package r-cran-maps. 160s Preparing to unpack .../250-r-cran-maps_3.4.2.1-1_amd64.deb ... 160s Unpacking r-cran-maps (3.4.2.1-1) ... 160s Selecting previously unselected package r-cran-mapdata. 160s Preparing to unpack .../251-r-cran-mapdata_2.3.1-1_amd64.deb ... 160s Unpacking r-cran-mapdata (2.3.1-1) ... 160s Selecting previously unselected package r-cran-misctools. 160s Preparing to unpack .../252-r-cran-misctools_0.6-28-1_all.deb ... 160s Unpacking 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unselected package r-cran-rbibutils. 161s Preparing to unpack .../264-r-cran-rbibutils_2.3-1_amd64.deb ... 161s Unpacking r-cran-rbibutils (2.3-1) ... 161s Selecting previously unselected package r-cran-rdpack. 161s Preparing to unpack .../265-r-cran-rdpack_2.6.3-1_all.deb ... 161s Unpacking r-cran-rdpack (2.6.3-1) ... 161s Selecting previously unselected package r-cran-plm. 161s Preparing to unpack .../266-r-cran-plm_2.6-7-1_all.deb ... 161s Unpacking r-cran-plm (2.6-7-1) ... 161s Selecting previously unselected package r-cran-praise. 161s Preparing to unpack .../267-r-cran-praise_1.0.0-4build2_all.deb ... 161s Unpacking r-cran-praise (1.0.0-4build2) ... 161s Selecting previously unselected package r-cran-randomforest. 161s Preparing to unpack .../268-r-cran-randomforest_4.7-1.2-1_amd64.deb ... 161s Unpacking r-cran-randomforest (4.7-1.2-1) ... 161s Selecting previously unselected package r-cran-tinytex. 161s Preparing to unpack .../269-r-cran-tinytex_0.58-1_all.deb ... 161s Unpacking 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Setting up r-cran-plm (2.6-7-1) ... 164s Setting up r-cran-viridis (0.6.5-1) ... 164s Setting up r-cran-testthat (3.2.3-1) ... 164s Setting up r-cran-classint (0.4-11+dfsg-1) ... 164s Setting up r-cran-bslib (0.9.0+dfsg-3build1) ... 164s Setting up r-cran-spatstat.explore (3.3-4-1) ... 164s Setting up r-cran-ggthemes (5.2.0-1) ... 164s Setting up r-cran-tidyr (1.3.1-1) ... 164s Setting up r-cran-ggforce (0.4.2-1) ... 164s Setting up r-cran-spatstat.model (3.3-4-1) ... 164s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 164s Setting up r-cran-ncmeta (0.4.0-1) ... 164s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 164s Setting up r-cran-spatstat.linnet (3.2-5-1) ... 164s Setting up r-cran-spatstat (3.3-1-1) ... 164s Setting up libheif-plugin-aomdec:amd64 (1.21.2-1) ... 164s Setting up libheif-plugin-libde265:amd64 (1.21.2-1) ... 164s Setting up libheif1:amd64 (1.21.2-1) ... 164s Setting up libgdal38:amd64 (3.12.1+dfsg-1) ... 164s Setting up r-cran-terra (1.8-70-1build2) ... 164s Setting up r-cran-sf (1.0-19+dfsg-2build2) ... 164s Setting up r-cran-stars (0.6-8-1) ... 164s Setting up r-cran-sftime (0.2-0-6) ... 164s Setting up r-cran-areal (0.1.8+dfsg-2) ... 164s Setting up r-cran-gstat (2.1-3-2) ... 164s Setting up r-cran-raster (3.6-32-1) ... 164s Setting up r-cran-lwgeom (0.2-14-1) ... 164s Setting up r-cran-exactextractr (0.10.0-1build2) ... 164s Setting up r-cran-ncdfgeom (1.1.6+dfsg-1) ... 164s Processing triggers for libc-bin (2.42-2ubuntu4) ... 164s Processing triggers for man-db (2.13.1-1) ... 165s Processing triggers for install-info (7.2-5) ... 166s autopkgtest [17:57:43]: test environment configured for cross building 166s autopkgtest [17:57:43]: test run-unit-test: [----------------------- 166s BEGIN TEST aggregate.R 166s 166s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 166s Copyright (C) 2025 The R Foundation for Statistical Computing 166s Platform: x86_64-pc-linux-gnu 166s 166s R is free software and comes with ABSOLUTELY NO WARRANTY. 166s You are welcome to redistribute it under certain conditions. 166s Type 'license()' or 'licence()' for distribution details. 166s 166s R is a collaborative project with many contributors. 166s Type 'contributors()' for more information and 166s 'citation()' on how to cite R or R packages in publications. 166s 166s Type 'demo()' for some demos, 'help()' for on-line help, or 166s 'help.start()' for an HTML browser interface to help. 166s Type 'q()' to quit R. 166s 166s > ## IGNORE_RDIFF_BEGIN 166s > library(stars) 166s Loading required package: abind 166s Loading required package: sf 166s Linking to GEOS 3.14.1, GDAL 3.12.1, PROJ 9.7.0; sf_use_s2() is TRUE 166s > ## IGNORE_RDIFF_END 166s > 166s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 166s + data(air) # this loads several datasets in .GlobalEnv 166s + dim(air) 166s + d = st_dimensions(station = st_set_crs(st_as_sfc(stations), 4326), time = dates) 166s + 166s + blocks = st_make_grid(st_as_sfc("POLYGON ((5.871619 47.26986, 15.03811 47.26986, 15.03811 55.05653, 5.871619 55.05653, 5.871619 47.26986))", crs = 4326), 166s + n = c(3,3)) 166s + 166s + print(aq <- st_as_stars(list(PM10 = air), dimensions = d)) 166s + print(a <- aggregate(aq, blocks, mean, na.rm = TRUE)) 166s + } 167s stars object with 2 dimensions and 1 attribute 167s attribute(s): 167s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 167s PM10 0 9.921 14.792 17.69728 21.992 274.333 157659 167s dimension(s): 167s from to offset delta refsys point 167s station 1 70 NA NA WGS 84 TRUE 167s time 1 4383 1998-01-01 1 days Date FALSE 167s values 167s station POINT (9.585911 53.67057),...,POINT (9.446661 49.24068) 167s time NULL 167s stars object with 2 dimensions and 1 attribute 167s attribute(s): 167s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 167s PM10 1 11 15.57425 18.1715 22.17197 183.271 8429 167s dimension(s): 167s from to offset delta refsys point 167s geometry 1 9 NA NA WGS 84 FALSE 167s time 1 4383 1998-01-01 1 days Date FALSE 167s values 167s geometry POLYGON ((5.871619 47.269...,...,POLYGON ((11.98261 52.460... 167s time NULL 167s > 167s > # adapted from ?read_stars: 167s > m = array(1:720, dim = c(x = 10, y = 12, t = 6)) # named dim 167s > st = st_as_stars(m) 167s > attr(st, "dimensions")$y$delta = -1 167s > attr(st, "dimensions")$y$offset = 12 167s > tm = as.Date("2019-02-19") + 1:6 167s > st = st_set_crs(st_set_dimensions(st, 3, values = tm), 4326) 167s > 167s > tmp = tempfile(fileext = ".tif") 167s > write_stars(st, tmp) 167s > 167s > (red <- setNames(read_stars(tmp, RasterIO = list(nXOff = 1, nYOff = 1, nXsize = 10, nYSize = 12, 167s + nBufXSize = 2, nBufYSize = 2)), "foo")) 167s stars object with 3 dimensions and 1 attribute 167s attribute(s): 167s Min. 1st Qu. Median Mean 3rd Qu. Max. 167s foo 33 199.25 365.5 365.5 531.75 698 167s dimension(s): 167s from to offset delta refsys point x/y 167s x 1 2 0 5 WGS 84 FALSE [x] 167s y 1 2 12 -6 WGS 84 FALSE [y] 167s band 1 6 NA NA NA NA 167s > 167s > sfc = st_set_crs(st_as_sfc(red, as_points = FALSE), st_crs(st)) 167s > (a = aggregate(st, st_sf(a = 1, geom = sfc), mean)) 167s stars object with 2 dimensions and 1 attribute 167s attribute(s): 167s Min. 1st Qu. Median Mean 3rd Qu. Max. 167s A1 28 194.25 360.5 360.5 526.75 693 167s dimension(s): 167s from to offset delta refsys point 167s geom 1 4 NA NA WGS 84 FALSE 167s t 1 6 2019-02-20 1 days Date FALSE 167s values 167s geom POLYGON ((0 12, 5 12, 5 6...,...,POLYGON ((5 6, 10 6, 10 0... 167s t NULL 167s > (a = aggregate(st, sfc, mean)) 167s stars object with 2 dimensions and 1 attribute 167s attribute(s): 167s Min. 1st Qu. Median Mean 3rd Qu. Max. 167s A1 28 194.25 360.5 360.5 526.75 693 167s dimension(s): 167s from to offset delta refsys point 167s geometry 1 4 NA NA WGS 84 FALSE 167s t 1 6 2019-02-20 1 days Date FALSE 167s values 167s geometry POLYGON ((0 12, 5 12, 5 6...,...,POLYGON ((5 6, 10 6, 10 0... 167s t NULL 167s > 167s > tm0 = as.Date("2019-02-19") + -1:8 167s > (a = aggregate(st, tm0, mean, na.rm = TRUE)) 167s stars object with 3 dimensions and 1 attribute 167s attribute(s): 167s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 167s A1 1 180.75 360.5 360.5 540.25 720 480 167s dimension(s): 167s from to offset delta refsys point x/y 167s time 1 10 2019-02-18 1 days Date NA 167s x 1 10 0 1 WGS 84 FALSE [x] 167s y 1 12 12 -1 WGS 84 FALSE [y] 167s > (a = aggregate(st, "days", mean, na.rm = TRUE)) 167s stars object with 3 dimensions and 1 attribute 167s attribute(s): 167s Min. 1st Qu. Median Mean 3rd Qu. Max. 167s A1 1 180.75 360.5 360.5 540.25 720 167s dimension(s): 167s from to offset delta refsys point x/y 167s time 1 6 2019-02-20 1 days Date NA 167s x 1 10 0 1 WGS 84 FALSE [x] 167s y 1 12 12 -1 WGS 84 FALSE [y] 167s > yd = function(x) as.POSIXlt(x)$yday 167s > (a = aggregate(st, yd, mean, na.rm = TRUE)) 167s stars object with 3 dimensions and 1 attribute 167s attribute(s): 167s Min. 1st Qu. Median Mean 3rd Qu. Max. 167s A1 1 180.75 360.5 360.5 540.25 720 167s dimension(s): 167s from to offset delta refsys point values x/y 167s geometry 1 6 NA NA NA NA 50,...,55 167s x 1 10 0 1 WGS 84 FALSE NULL [x] 167s y 1 12 12 -1 WGS 84 FALSE NULL [y] 167s > 167s > # with "by" geometry not overlapping x 167s > pt = st_point(c(-10,-10)) 167s > (sfc = c(sfc, st_sfc(pt, crs = st_crs(sfc)))) 167s Geometry set for 5 features 167s Geometry type: GEOMETRY 167s Dimension: XY 167s Bounding box: xmin: -10 ymin: -10 xmax: 10 ymax: 12 167s Geodetic CRS: WGS 84 167s POLYGON ((0 12, 5 12, 5 6, 0 6, 0 12)) 167s POLYGON ((5 12, 10 12, 10 6, 5 6, 5 12)) 167s > (a = aggregate(st, sfc, mean)) 167s POLYGON ((0 6, 5 6, 5 0, 0 0, 0 6)) 167s POLYGON ((5 6, 10 6, 10 0, 5 0, 5 6)) 167s POINT (-10 -10) 167s stars object with 2 dimensions and 1 attribute 167s attribute(s): 167s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 167s A1 28 194.25 360.5 360.5 526.75 693 6 167s dimension(s): 167s from to offset delta refsys point 167s geometry 1 5 NA NA WGS 84 FALSE 167s t 1 6 2019-02-20 1 days Date FALSE 167s values 167s geometry POLYGON ((0 12, 5 12, 5 6...,...,POINT (-10 -10) 167s t NULL 167s > (a = aggregate(st, st, mean)) 167s stars object with 2 dimensions and 1 attribute 167s attribute(s): 167s Min. 1st Qu. Median Mean 3rd Qu. Max. 167s A1 1 180.75 360.5 360.5 540.25 720 167s dimension(s): 167s from to offset delta refsys point 167s geometry 1 120 NA NA WGS 84 FALSE 167s t 1 6 2019-02-20 1 days Date FALSE 167s values 167s geometry POLYGON ((0 12, 1 12, 1 1...,...,POLYGON ((9 1, 10 1, 10 0... 167s t NULL 167s > 167s BEGIN TEST align.R 167s 167s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 167s Copyright (C) 2025 The R Foundation for Statistical Computing 167s Platform: x86_64-pc-linux-gnu 167s 167s R is free software and comes with ABSOLUTELY NO WARRANTY. 167s You are welcome to redistribute it under certain conditions. 167s Type 'license()' or 'licence()' for distribution details. 167s 167s R is a collaborative project with many contributors. 167s Type 'contributors()' for more information and 167s 'citation()' on how to cite R or R packages in publications. 167s 167s Type 'demo()' for some demos, 'help()' for on-line help, or 167s 'help.start()' for an HTML browser interface to help. 167s Type 'q()' to quit R. 167s 167s > suppressPackageStartupMessages(library(stars)) 167s > set.seed(1331) 167s > st_sample(st_as_sfc(st_bbox(L7_ETMs)), 1) 168s Geometry set for 1 feature 168s Geometry type: POINT 168s Dimension: XY 168s Bounding box: xmin: 291430.8 ymin: 9111430 xmax: 291430.8 ymax: 9111430 168s Projected CRS: SIRGAS 2000 / UTM zone 25S 168s > b = st_buffer(st_sample(st_as_sfc(st_bbox(L7_ETMs)), 1), 335) 168s POINT (291430.8 9111430) 168s > bba = stars:::st_align(st_bbox(b), st_dimensions(L7_ETMs)) 168s > 168s > plot(L7_ETMs[,,,1], extent = st_buffer(b, 20), reset = FALSE, key.pos = NULL) 168s > plot(b, add = TRUE, col = NA, border = 'red') 168s > plot(st_as_sfc(st_bbox(b)), col = NA, border = 'red', add = TRUE) 168s > plot(st_as_sfc(bba), col = NA, border = 'blue', add = TRUE) 168s > st_bbox(b) 168s xmin ymin xmax ymax 168s 297116.8 9119404.1 297786.8 9120074.1 168s > bba 168s xmin ymin xmax ymax 168s 297098.3 9119392.8 297810.8 9120076.8 168s > 168s > plot(L7_ETMs[,,,1], reset = FALSE, key.pos = NULL) 168s > plot(b, col = 'red', add = TRUE) 168s > plot(st_as_sfc(bba), col = NA, border = 'blue', add = TRUE) 168s > 168s > b0 = st_buffer(b, -100) 168s > L7 = st_as_stars(L7_ETMs)[b0][,,,1] |> st_normalize() 168s > bbb = stars:::st_align(st_bbox(b), st_dimensions(L7)) 168s > plot(L7, extent = st_buffer(b, 120), reset = FALSE, key.pos = NULL) 168s > plot(st_as_sfc(st_bbox(L7)), col = NA, border = 'black', add = TRUE) 168s > plot(st_as_sfc(bbb), col = NA, border = 'blue', add = TRUE) 168s > plot(b, col = NA, border = 'red', add = TRUE) 168s > 168s > all.equal(bbb, bba) 168s [1] TRUE 168s > 168s BEGIN TEST area.R 168s 168s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 168s Copyright (C) 2025 The R Foundation for Statistical Computing 168s Platform: x86_64-pc-linux-gnu 168s 168s R is free software and comes with ABSOLUTELY NO WARRANTY. 168s You are welcome to redistribute it under certain conditions. 168s Type 'license()' or 'licence()' for distribution details. 168s 168s R is a collaborative project with many contributors. 168s Type 'contributors()' for more information and 168s 'citation()' on how to cite R or R packages in publications. 168s 168s Type 'demo()' for some demos, 'help()' for on-line help, or 168s 'help.start()' for an HTML browser interface to help. 168s Type 'q()' to quit R. 168s 168s > suppressPackageStartupMessages(library(stars)) 168s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 168s > x = read_stars(tif) 168s > (a = st_area(x[,1:5,1:5])) 168s stars object with 2 dimensions and 1 attribute 168s attribute(s): 168s Min. 1st Qu. Median Mean 3rd Qu. Max. 168s area [m^2] 812.25 812.25 812.25 812.25 812.25 812.25 168s dimension(s): 168s from to offset delta refsys point x/y 168s x 1 5 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 168s y 1 5 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 168s > 168s > m = matrix(1:20, nrow = 5, ncol = 4) 168s > x = c(0, 0.5, 1, 2, 4, 5) # 6 numbers: boundaries! 168s > y = c(0.3, 0.5, 1, 2, 2.2) # 5 numbers: boundaries! 168s > (r = st_as_stars(list(m = m), dimensions = st_dimensions(x = x, y = y))) 168s stars object with 2 dimensions and 1 attribute 168s attribute(s): 168s Min. 1st Qu. Median Mean 3rd Qu. Max. 168s m 1 5.75 10.5 10.5 15.25 20 168s dimension(s): 168s from to point values x/y 168s x 1 5 FALSE [0,0.5),...,[4,5) [x] 168s y 1 4 FALSE [0.3,0.5),...,[2,2.2) [y] 168s > # image(r, axes = TRUE, col = grey((1:20)/20)) 168s > (a = st_area(r)) 168s stars object with 2 dimensions and 1 attribute 168s attribute(s): 168s Min. 1st Qu. Median Mean 3rd Qu. Max. 168s area 0.1 0.2 0.325 0.475 0.5 2 168s dimension(s): 168s from to point values x/y 168s x 1 5 FALSE [0,0.5),...,[4,5) [x] 168s y 1 4 FALSE [0.3,0.5),...,[2,2.2) [y] 168s > #plot(a, axes = TRUE) 168s > 168s > s5p = system.file("sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", package = "starsdata") 168s > if (s5p != "") { 168s + nit.c = read_stars(s5p, sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 168s + curvilinear = c("//PRODUCT/longitude", "//PRODUCT/latitude"), driver = NULL) 168s + if (inherits(nit.c[[1]], "units")) 168s + nit.c[[1]] = units::drop_units(nit.c[[1]]) 168s + nit.c[[1]][nit.c[[1]] > 9e+36] = NA 168s + st_crs(nit.c) = 4326 168s + print((a <- st_area(nit.c[,1:5,1:5]))) 168s + # plot(a, axes = TRUE, border = NA) 168s + } 168s > 168s BEGIN TEST crop.R 168s Missing coordinate reference system: assuming Cartesian coordinates 168s 168s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 168s Copyright (C) 2025 The R Foundation for Statistical Computing 168s Platform: x86_64-pc-linux-gnu 168s 168s R is free software and comes with ABSOLUTELY NO WARRANTY. 168s You are welcome to redistribute it under certain conditions. 168s Type 'license()' or 'licence()' for distribution details. 168s 168s R is a collaborative project with many contributors. 168s Type 'contributors()' for more information and 168s 'citation()' on how to cite R or R packages in publications. 168s 168s Type 'demo()' for some demos, 'help()' for on-line help, or 168s 'help.start()' for an HTML browser interface to help. 168s Type 'q()' to quit R. 168s 168s > suppressPackageStartupMessages(library(stars)) 169s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 169s > x = read_stars(tif) 169s > xy = structure(list(x = c(293253.999046018, 296400.196497684), y = c(9113801.64775462, 169s + 9111328.49619133)), .Names = c("x", "y")) 169s > pts = st_as_sf(data.frame(do.call(cbind, xy)), coords = c("x", "y"), crs = st_crs(x)) 169s > image(x, axes = TRUE) 169s > plot(st_as_sfc(st_bbox(pts)), col = NA, add = TRUE) 169s > 169s > bb = st_bbox(pts) 169s > (xx = x[bb]) 169s stars object with 3 dimensions and 1 attribute 169s attribute(s): 169s Min. 1st Qu. Median Mean 3rd Qu. Max. 169s L7_ETMs.tif 3 56 73 70.87303 89 255 169s dimension(s): 169s from to offset delta refsys point x/y 169s x 158 268 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 169s y 245 331 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 169s band 1 6 NA NA NA NA 169s > image(xx) 169s > plot(st_as_sfc(bb), add = TRUE, col = NA) 169s > st_contains(st_as_sfc(st_bbox(xx)), st_as_sfc(st_bbox(pts))) 169s Sparse geometry binary predicate list of length 1, where the predicate 169s was `contains' 169s 1: 1 169s > 169s > image(x) 169s > pt = st_point(c(x = 290462.103109179, y = 9114202.32594085)) 169s > buf = st_buffer(st_sfc(pt, crs = st_crs(x)), 1500) 169s > plot(buf, add = TRUE) 169s > 169s > buf = st_sfc(st_polygon(list(st_buffer(pt, 1500)[[1]], st_buffer(pt, 1000)[[1]])), 169s + crs = st_crs(x)) 169s > image(x[buf]) 169s > plot(buf, add = TRUE, col = NA) 169s > image(x[buf,crop=FALSE]) 169s > plot(buf, add = TRUE, col = NA) 169s > 169s > plot(x, rgb = 1:3) 169s > 169s > # #638: 169s > l = st_as_stars(L7_ETMs) 169s > st_bbox(l) |> st_as_sfc() -> bb 169s > (bb + 1e6) |> st_set_crs(st_crs(l)) -> b 169s > st_crop(l, b) 170s stars object with 3 dimensions and 1 attribute 170s attribute(s): 170s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 170s L7_ETMs NA NA NA NaN NA NA 737088 170s dimension(s): 170s from to offset delta refsys point x/y 170s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 170s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 170s band 1 6 NA NA NA NA 170s > st_intersects(b, st_as_sfc(st_bbox(l))) |> as.matrix() 170s Warning message: 170s In st_crop.stars(l, b) : st_crop: bounding boxes of x and y do not overlap 170s [,1] 170s [1,] FALSE 170s > (bb - 1e6) |> st_set_crs(st_crs(l)) -> b 170s > st_crop(l, b) 170s stars object with 3 dimensions and 1 attribute 170s attribute(s): 170s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 170s L7_ETMs NA NA NA NaN NA NA 737088 170s dimension(s): 170s Warning message: 170s In st_crop.stars(l, b) : st_crop: bounding boxes of x and y do not overlap 170s from to offset delta refsys point x/y 170s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 170s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 170s band 1 6 NA NA NA NA 170s > 170s BEGIN TEST curvilinear.R 170s 170s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 170s Copyright (C) 2025 The R Foundation for Statistical Computing 170s Platform: x86_64-pc-linux-gnu 170s 170s R is free software and comes with ABSOLUTELY NO WARRANTY. 170s You are welcome to redistribute it under certain conditions. 170s Type 'license()' or 'licence()' for distribution details. 170s 170s R is a collaborative project with many contributors. 170s Type 'contributors()' for more information and 170s 'citation()' on how to cite R or R packages in publications. 170s 170s Type 'demo()' for some demos, 'help()' for on-line help, or 170s 'help.start()' for an HTML browser interface to help. 170s Type 'q()' to quit R. 170s 170s > suppressPackageStartupMessages(library(stars)) 171s > 171s > s5p = system.file("sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", package = "starsdata") 171s > if (s5p != "") { 171s + 171s + lat_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/latitude") 171s + lon_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/longitude") 171s + nit_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column") 171s + lat = read_stars(lat_ds) 171s + lon = read_stars(lon_ds) 171s + nit = read_stars(nit_ds) 171s + nit[[1]][nit[[1]] > 9e+36] = NA 171s + 171s + ll = setNames(c(lon, lat), c("x", "y")) 171s + nit.c0 = st_as_stars(nit, curvilinear = ll) 171s + 171s + # more direct method: 171s + nit.c = read_stars(s5p, sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 171s + curvilinear = c("//PRODUCT/longitude", "//PRODUCT/latitude"), driver = NULL) 171s + if (inherits(nit.c[[1]], "units")) 171s + nit.c[[1]] = units::drop_units(nit.c[[1]]) 171s + nit.c[[1]][nit.c[[1]] > 9e+36] = NA 171s + all.equal(nit.c0, nit.c) 171s + st_crs(nit.c) = 4326 171s + print(nit.c) 171s + 171s + if (FALSE && capabilities()["png"]) { 171s + png("nit1.png", 800, 800) 171s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = TRUE, pch = 16) 171s + maps::map('world', add = TRUE, col = 'red') 171s + dev.off() 171s + 171s + png("nit2.png", 800, 800) 171s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = FALSE, border = NA) 171s + maps::map('world', add = TRUE, col = 'red') 171s + dev.off() 171s + 171s + nit.c = stars:::st_downsample(nit.c, 8) 171s + print(nit.c) 171s + 171s + png("nit3.png", 800, 800) 171s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = TRUE, pch = 16) 171s + maps::map('world', add = TRUE, col = 'red') 171s + dev.off() 171s + 171s + png("nit4.png", 800, 800) 171s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = FALSE, border = NA) 171s + maps::map('world', add = TRUE, col = 'red') 171s + dev.off() 171s + } 171s + 171s + } 171s > 171s BEGIN TEST datasets.R 171s 171s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 171s Copyright (C) 2025 The R Foundation for Statistical Computing 171s Platform: x86_64-pc-linux-gnu 171s 171s R is free software and comes with ABSOLUTELY NO WARRANTY. 171s You are welcome to redistribute it under certain conditions. 171s Type 'license()' or 'licence()' for distribution details. 171s 171s R is a collaborative project with many contributors. 171s Type 'contributors()' for more information and 171s 'citation()' on how to cite R or R packages in publications. 171s 171s Type 'demo()' for some demos, 'help()' for on-line help, or 171s 'help.start()' for an HTML browser interface to help. 171s Type 'q()' to quit R. 171s 171s > suppressPackageStartupMessages(library(stars)) 171s > bcsd_obs 171s stars_proxy object with 2 attributes in 2 file(s): 171s $foo 171s [1] "[...]/bcsd_obs_1999.nc:pr" 171s 171s $bar 171s [1] "[...]/bcsd_obs_1999.nc:tas" 171s 171s dimension(s): 171s from to offset delta refsys values x/y 171s x 1 81 -85 0.125 NA NULL [x] 171s y 1 33 37.12 -0.125 NA NULL [y] 171s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 171s > L7_ETMs 171s stars_proxy object with 1 attribute in 1 file(s): 171s $L7_ETMs 171s [1] "[...]/L7_ETMs.tif" 171s 171s dimension(s): 171s from to offset delta refsys point x/y 171s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 171s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 171s band 1 6 NA NA NA NA 171s > if (require(starsdata, quietly = TRUE)) { 171s + print(stars_sentinel2) 171s + } 171s > 171s BEGIN TEST dimensions.R 171s 171s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 171s Copyright (C) 2025 The R Foundation for Statistical Computing 171s Platform: x86_64-pc-linux-gnu 171s 171s R is free software and comes with ABSOLUTELY NO WARRANTY. 171s You are welcome to redistribute it under certain conditions. 171s Type 'license()' or 'licence()' for distribution details. 171s 171s R is a collaborative project with many contributors. 171s Type 'contributors()' for more information and 171s 'citation()' on how to cite R or R packages in publications. 171s 171s Type 'demo()' for some demos, 'help()' for on-line help, or 171s 'help.start()' for an HTML browser interface to help. 171s Type 'q()' to quit R. 171s 171s > # https://github.com/r-spatial/stars/issues/295 171s > suppressPackageStartupMessages(library(stars)) 171s > raw <- read_stars(system.file("nc/bcsd_obs_1999.nc", package = "stars")) 171s pr, tas, 171s > foo <- function(x, idx) stats::lowess(idx, x)$y 171s > 171s > timeline <- st_get_dimension_values(raw, "time") 171s > smooth = st_apply(raw, 171s + MARGIN = c("x", "y"), 171s + FUN = foo, 171s + idx = st_get_dimension_values(raw, "time") 171s + ) 172s > 172s > st_set_dimensions(smooth, 172s + which = "foo", 172s + values = st_get_dimension_values(raw, "time"), 172s + names = "time" 172s + ) 172s stars object with 3 dimensions and 2 attributes 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 172s pr 16.133519 70.371665 84.55774 87.72969 101.94830 278.6427 7116 172s tas -2.354958 9.632157 15.32671 14.61650 19.99331 24.7976 7116 172s dimension(s): 172s from to offset delta refsys values x/y 172s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 172s x 1 81 -85 0.125 NA NULL [x] 172s y 1 33 37.12 -0.125 NA NULL [y] 172s > 172s > raw %>% 172s + st_apply(MARGIN = c("x", "y"), FUN = foo, idx = timeline) %>% 172s + st_set_dimensions("foo", st_dimensions(raw)["time"]) 172s stars object with 3 dimensions and 2 attributes 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 172s pr 16.133519 70.371665 84.55774 87.72969 101.94830 278.6427 7116 172s tas -2.354958 9.632157 15.32671 14.61650 19.99331 24.7976 7116 172s dimension(s): 172s from to offset delta refsys values x/y 172s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 172s x 1 81 -85 0.125 NA NULL [x] 172s y 1 33 37.12 -0.125 NA NULL [y] 172s > 172s BEGIN TEST downsample.R 172s 172s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 172s Copyright (C) 2025 The R Foundation for Statistical Computing 172s Platform: x86_64-pc-linux-gnu 172s 172s R is free software and comes with ABSOLUTELY NO WARRANTY. 172s You are welcome to redistribute it under certain conditions. 172s Type 'license()' or 'licence()' for distribution details. 172s 172s R is a collaborative project with many contributors. 172s Type 'contributors()' for more information and 172s 'citation()' on how to cite R or R packages in publications. 172s 172s Type 'demo()' for some demos, 'help()' for on-line help, or 172s 'help.start()' for an HTML browser interface to help. 172s Type 'q()' to quit R. 172s 172s > suppressPackageStartupMessages(library(stars)) 172s > m = matrix(1:121, 11, 11) 172s > m 172s [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] 172s [1,] 1 12 23 34 45 56 67 78 89 100 111 172s [2,] 2 13 24 35 46 57 68 79 90 101 112 172s [3,] 3 14 25 36 47 58 69 80 91 102 113 172s [4,] 4 15 26 37 48 59 70 81 92 103 114 172s [5,] 5 16 27 38 49 60 71 82 93 104 115 172s [6,] 6 17 28 39 50 61 72 83 94 105 116 172s [7,] 7 18 29 40 51 62 73 84 95 106 117 172s [8,] 8 19 30 41 52 63 74 85 96 107 118 172s [9,] 9 20 31 42 53 64 75 86 97 108 119 172s [10,] 10 21 32 43 54 65 76 87 98 109 120 172s [11,] 11 22 33 44 55 66 77 88 99 110 121 172s > s = st_as_stars(m) 172s > st_downsample(s, 1) 172s stars object with 2 dimensions and 1 attribute 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. 172s A1 1 28.5 61 61 93.5 121 172s dimension(s): 172s from to offset delta point x/y 172s X1 1 6 0 2 FALSE [x] 172s X2 1 6 0 2 FALSE [y] 172s > st_downsample(s, 1)[[1]] 172s [,1] [,2] [,3] [,4] [,5] [,6] 172s [1,] 1 23 45 67 89 111 172s [2,] 3 25 47 69 91 113 172s [3,] 5 27 49 71 93 115 172s [4,] 7 29 51 73 95 117 172s [5,] 9 31 53 75 97 119 172s [6,] 11 33 55 77 99 121 172s > st_downsample(s, 1, offset = 1) 172s stars object with 2 dimensions and 1 attribute 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. 172s A1 13 37 61 61 85 109 172s dimension(s): 172s from to offset delta point x/y 172s X1 1 5 1 2 FALSE [x] 172s X2 1 5 1 2 FALSE [y] 172s > st_downsample(s, 1, offset = 1)[[1]] 172s [,1] [,2] [,3] [,4] [,5] 172s [1,] 13 35 57 79 101 172s [2,] 15 37 59 81 103 172s [3,] 17 39 61 83 105 172s [4,] 19 41 63 85 107 172s [5,] 21 43 65 87 109 172s > st_downsample(s, 1, FUN = mean) 172s stars object with 2 dimensions and 1 attribute 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. 172s A1 7 31 55 55 79 103 172s dimension(s): 172s from to offset delta point x/y 172s X1 1 5 0 2 FALSE [x] 172s X2 1 5 0 2 FALSE [y] 172s > st_downsample(s, 1, FUN = mean)[[1]] 172s [,1] [,2] [,3] [,4] [,5] 172s [1,] 7 29 51 73 95 172s [2,] 9 31 53 75 97 172s [3,] 11 33 55 77 99 172s [4,] 13 35 57 79 101 172s [5,] 15 37 59 81 103 172s > st_downsample(s, 1, offset = 1, FUN = mean) 172s stars object with 2 dimensions and 1 attribute 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. 172s A1 19 43 67 67 91 115 172s dimension(s): 172s from to offset delta point x/y 172s X1 1 5 1 2 FALSE [x] 172s X2 1 5 1 2 FALSE [y] 172s > st_downsample(s, 1, offset = c(0,1), FUN = mean)[[1]] 172s [,1] [,2] [,3] [,4] [,5] 172s [1,] 18 40 62 84 106 172s [2,] 20 42 64 86 108 172s [3,] 22 44 66 88 110 172s [4,] 24 46 68 90 112 172s [5,] 26 48 70 92 114 172s > st_downsample(s, 1, offset = c(0,1)) 172s stars object with 2 dimensions and 1 attribute 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. 172s A1 12 36.5 61 61 85.5 110 172s dimension(s): 172s from to offset delta point x/y 172s X1 1 6 0 2 FALSE [x] 172s X2 1 5 1 2 FALSE [y] 172s > st_downsample(s, 1, offset = c(0,1))[[1]] 172s [,1] [,2] [,3] [,4] [,5] 172s [1,] 12 34 56 78 100 172s [2,] 14 36 58 80 102 172s [3,] 16 38 60 82 104 172s [4,] 18 40 62 84 106 172s [5,] 20 42 64 86 108 172s [6,] 22 44 66 88 110 172s > 172s BEGIN TEST ee.R 172s 172s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 172s Copyright (C) 2025 The R Foundation for Statistical Computing 172s Platform: x86_64-pc-linux-gnu 172s 172s R is free software and comes with ABSOLUTELY NO WARRANTY. 172s You are welcome to redistribute it under certain conditions. 172s Type 'license()' or 'licence()' for distribution details. 172s 172s R is a collaborative project with many contributors. 172s Type 'contributors()' for more information and 172s 'citation()' on how to cite R or R packages in publications. 172s 172s Type 'demo()' for some demos, 'help()' for on-line help, or 172s 'help.start()' for an HTML browser interface to help. 172s Type 'q()' to quit R. 172s 172s > # show that extract with exact=TRUE equals st_interpolate_aw(), only much faster 172s > options(digits=15) 172s > suppressPackageStartupMessages(library(stars)) 173s > L = st_as_stars(L7_ETMs)[,,,1] 173s > set.seed(123432) 173s > st_bbox(L) |> 173s + st_as_sfc() |> 173s + st_centroid() |> 173s + st_buffer(50) |> 173s + st_sample(10) |> 173s + st_combine() |> 173s + st_convex_hull() -> ch 173s > if (interactive()) { 173s + plot(L, reset = FALSE) 173s + plot(ch, add = TRUE, border = 'red', col = NA) 173s + } 173s > if (FALSE) { 173s + e = st_extract(L, ch)[[1]] 173s + a = aggregate(L, ch, mean)[[1]] 173s + identical(e, a) # same code path 173s + ee = aggregate(L, ch, mean, exact = TRUE)[[1]] 173s + all.equal(e, ee) 173s + aw = suppressWarnings(st_interpolate_aw(L, ch, extensive = FALSE)$V1) 173s + all.equal(as.vector(ee), aw) 173s + ee0 = st_extract(L, ch, exact = TRUE)[[1]] 173s + all.equal(ee0, ee) # ?? 173s + } 173s > 173s BEGIN TEST extract.R 173s 173s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 173s Copyright (C) 2025 The R Foundation for Statistical Computing 173s Platform: x86_64-pc-linux-gnu 173s 173s R is free software and comes with ABSOLUTELY NO WARRANTY. 173s You are welcome to redistribute it under certain conditions. 173s Type 'license()' or 'licence()' for distribution details. 173s 173s R is a collaborative project with many contributors. 173s Type 'contributors()' for more information and 173s 'citation()' on how to cite R or R packages in publications. 173s 173s Type 'demo()' for some demos, 'help()' for on-line help, or 173s 'help.start()' for an HTML browser interface to help. 173s Type 'q()' to quit R. 173s 173s > # Create 'stars' object 173s > set.seed(1331) 173s > suppressPackageStartupMessages(library(stars)) 173s > volcano = rbind(volcano, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA) # add NA rows 173s > d = st_dimensions(x = 1:ncol(volcano), y = 1:nrow(volcano)) 173s > (r = st_as_stars(t(volcano))) 173s stars object with 2 dimensions and 1 attribute 173s attribute(s): 173s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 173s A1 94 108 124 130.1879 150 195 732 173s dimension(s): 173s from to offset delta point x/y 173s X1 1 61 0 1 FALSE [x] 173s X2 1 99 0 1 FALSE [y] 173s > r = st_set_dimensions(r, 1, offset = 0, delta = 1) 173s > r = st_set_dimensions(r, 2, offset = nrow(volcano), delta = -1) 173s > 173s > # Create points 173s > pnt = st_sample(st_as_sfc(st_bbox(r)), 100) 173s > pnt = st_as_sf(pnt) 173s > 173s > # Extract - 'st_join' 173s > x = st_join(pnt, st_as_sf(r)) 173s > 173s > # Extract - 'st_extract' 173s > y = st_extract(r, pnt) 173s > 173s > # check there are NA's: 173s > any(is.na(x)) 173s [1] TRUE 173s > # Compare 173s > all.equal(x$A1, y[[1]]) 173s [1] TRUE 173s > 173s > ################################################ 173s > if (FALSE) { 173s + 173s + ## tic: segfaults 173s + # check equal results with stars_proxy: 173s + #x = st_extract(stars:::st_as_stars_proxy(r), pnt) 173s + #all.equal(x$A1, y[[1]]) 173s + #all.equal(x, y) 173s + 173s + r = c(r, 2*r, 10*r) 173s + x = st_join(pnt, st_as_sf(r)) 173s + y = st_as_sf(st_extract(r, pnt)) 173s + all.equal(x, y) 173s + 173s + ## tic: segfaults 173s + #x = st_extract(stars:::st_as_stars_proxy(merge(r)), pnt) 173s + #all.equal(st_as_sf(x), y) 173s + 173s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 173s + xp = read_stars(tif, proxy = TRUE) 173s + xm = read_stars(tif, proxy = FALSE) 173s + pts = st_sample(st_as_sfc(st_bbox(xp)), 10) 173s + pts = c(pts, st_as_sfc("POINT(0 0)"), pts) 173s + em = st_extract(xm, pts) 173s + if (utils::packageVersion("sf") >= "0.9-7") { 173s + ep = st_extract(xp, pts) 173s + print(all.equal(ep, em, check.attributes = TRUE)) 173s + } 173s + 173s + # two-attribute objects: 173s + library(stars) 173s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 173s + xp = read_stars(c(tif, tif), proxy = TRUE) 173s + xm = read_stars(c(tif, tif), proxy = FALSE) 173s + pts = st_sample(st_as_sfc(st_bbox(xp)), 10) 173s + pts = c(pts, st_as_sfc("POINT(0 0)"), pts) 173s + em = st_extract(xm, pts) 173s + if (utils::packageVersion("sf") >= "0.9-7") { 173s + ep = st_extract(xp, pts) 173s + print(all.equal(ep, em, check.attributes = TRUE)) 173s + } 173s + 173s + # single-attribute, single raster objects: 173s + tif1 = paste0(tempfile(), ".tif") 173s + write_stars(xm[1,,,1], "x.tif") 173s + xp = read_stars("x.tif", proxy = TRUE) 173s + xm = read_stars("x.tif", proxy = FALSE) 173s + em = st_extract(xm, pts) 173s + if (utils::packageVersion("sf") >= "0.9-7") { 173s + ep = st_extract(xp, pts) 173s + print(all.equal(ep, em, check.attributes = TRUE)) 173s + } 173s + 173s + # multiple-file attributes: 173s + x = c( 173s + "avhrr-only-v2.19810901.nc", 173s + "avhrr-only-v2.19810902.nc", 173s + "avhrr-only-v2.19810903.nc", 173s + "avhrr-only-v2.19810904.nc", 173s + "avhrr-only-v2.19810905.nc", 173s + "avhrr-only-v2.19810906.nc", 173s + "avhrr-only-v2.19810907.nc", 173s + "avhrr-only-v2.19810908.nc", 173s + "avhrr-only-v2.19810909.nc" 173s + ) 173s + file_list = system.file(paste0("netcdf/", x), package = "starsdata") 173s + if (!identical(file_list, "")) { 173s + y = read_stars(file_list, quiet = TRUE) 173s + print(y) 173s + st_crs(y) = "OGC:CRS84" 173s + pts = st_sample(st_as_sfc(st_bbox(y)), 10) 173s + em = st_extract(y, pts) 173s + 173s + (y = read_stars(file_list, quiet = TRUE, proxy = TRUE)) 173s + print(y) 173s + st_crs(y) = "OGC:CRS84" 173s + if (utils::packageVersion("sf") >= "0.9-7") { 173s + ep = st_extract(y, pts) 173s + print(all.equal(em, ep)) 173s + } 173s + } 173s + 173s + # nearest & bilinear comparison: 173s + if (utils::packageVersion("sf") >= "0.9-7") { 173s + set.seed(12331) 173s + s = st_as_stars(matrix(rnorm(16), 4)) 173s + pts = st_sample(st_as_sfc(st_bbox(s)), 10000, type = "regular") 173s + s1 = st_extract(s, pts, bilinear = FALSE) 173s + s2 = st_extract(s, pts, bilinear = TRUE) 173s + s1$s2 = s2[[1]] 173s + names(s1)[c(1,3)] = c("nearest", "bilinear") 173s + print(s1[sample(10000, 5),]) 173s + } 173s + } 173s > 173s BEGIN TEST gridtypes.R 173s 173s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 173s Copyright (C) 2025 The R Foundation for Statistical Computing 173s Platform: x86_64-pc-linux-gnu 173s 173s R is free software and comes with ABSOLUTELY NO WARRANTY. 173s You are welcome to redistribute it under certain conditions. 173s Type 'license()' or 'licence()' for distribution details. 173s 173s R is a collaborative project with many contributors. 173s Type 'contributors()' for more information and 173s 'citation()' on how to cite R or R packages in publications. 173s 173s Type 'demo()' for some demos, 'help()' for on-line help, or 173s 'help.start()' for an HTML browser interface to help. 173s Type 'q()' to quit R. 173s 173s > suppressPackageStartupMessages(library(stars)) 174s > 174s > # regular, but not spatial: 174s > d = st_dimensions(a = 1:3, b = 1:3, band = c("foo", "bar")) 174s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 174s stars object with 3 dimensions and 1 attribute 174s attribute(s): 174s Min. 1st Qu. Median Mean 3rd Qu. Max. 174s X 1 5.25 9.5 9.5 13.75 18 174s dimension(s): 174s from to offset delta point values 174s a 1 3 1 1 FALSE NULL 174s b 1 3 1 1 FALSE NULL 174s band 1 2 NA NA FALSE foo, bar 174s > as.data.frame(st, add_max=FALSE)[1:4,] 174s a b band X 174s 1 1 1 foo 1 174s 2 2 1 foo 2 174s 3 3 1 foo 3 174s 4 1 2 foo 4 174s > try(x <- st_bbox(st)) # error 174s Error in st_bbox.dimensions(st_dimensions(obj), ...) : 174s dimensions table does not have x & y, nor an sfc dimension 174s > 174s > # regular, geotransform: 174s > d = st_dimensions(x = 1:3, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 174s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 174s stars object with 3 dimensions and 1 attribute 174s attribute(s): 174s Min. 1st Qu. Median Mean 3rd Qu. Max. 174s X 1 5.25 9.5 9.5 13.75 18 174s dimension(s): 174s from to offset delta point values x/y 174s x 1 3 1 1 FALSE NULL [x] 174s y 1 3 1 1 FALSE NULL [y] 174s band 1 2 NA NA FALSE foo, bar 174s > as.data.frame(st, add_max=FALSE)[1:4,] 174s x y band X 174s 1 1.5 1.5 foo 1 174s 2 2.5 1.5 foo 2 174s 3 3.5 1.5 foo 3 174s 4 1.5 2.5 foo 4 174s > as.data.frame(st, add_max=TRUE)[1:4,] 174s x y band x_max y_max X 174s 1 1 1 foo 2 2 1 174s 2 2 1 foo 3 2 2 174s 3 3 1 foo 4 2 3 174s 4 1 2 foo 2 3 4 174s > st_bbox(st) 174s xmin ymin xmax ymax 174s 1 1 4 4 174s > 174s > # rectilinear with offset given: 174s > xd = c(1, 2, 4) 174s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 174s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 174s stars object with 3 dimensions and 1 attribute 174s attribute(s): 174s Min. 1st Qu. Median Mean 3rd Qu. Max. 174s X 1 5.25 9.5 9.5 13.75 18 174s dimension(s): 174s from to offset delta point values x/y 174s x 1 3 NA NA FALSE [1,2), [2,4), [4,6) [x] 174s y 1 3 1 1 FALSE NULL [y] 174s band 1 2 NA NA FALSE foo, bar 174s > as.data.frame(st, add_max=FALSE)[1:4,] 174s x y band X 174s 1 1.5 1.5 foo 1 174s 2 3.0 1.5 foo 2 174s 3 5.0 1.5 foo 3 174s 4 1.5 2.5 foo 4 174s > as.data.frame(st, add_max=TRUE)[1:4,] 174s x y band x_max y_max X 174s 1 1 1 foo 2 2 1 174s 2 2 1 foo 4 2 2 174s 3 4 1 foo 6 2 3 174s 4 1 2 foo 2 3 4 174s > st_bbox(st) 174s xmin ymin xmax ymax 174s 1 1 6 4 174s > 174s > # rectilinear with midpoints given: 174s > xd = c(1, 2, 4) 174s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), cell_midpoints = TRUE) 174s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 174s stars object with 3 dimensions and 1 attribute 174s attribute(s): 174s Min. 1st Qu. Median Mean 3rd Qu. Max. 174s X 1 5.25 9.5 9.5 13.75 18 174s dimension(s): 174s from to offset delta point values x/y 174s x 1 3 NA NA FALSE [0.5,1.5), [1.5,3.0), [3.0,5.0) [x] 174s y 1 3 0.5 1 FALSE NULL [y] 174s band 1 2 NA NA FALSE foo, bar 174s > as.data.frame(st, add_max=FALSE)[1:4,] 174s x y band X 174s 1 1.00 1 foo 1 174s 2 2.25 1 foo 2 174s 3 4.00 1 foo 3 174s 4 1.00 2 foo 4 174s > as.data.frame(st, add_max=TRUE)[1:4,] 174s x y band x_max y_max X 174s 1 0.5 0.5 foo 1.5 1.5 1 174s 2 1.5 0.5 foo 3.0 1.5 2 174s 3 3.0 0.5 foo 5.0 1.5 3 174s 4 0.5 1.5 foo 1.5 2.5 4 174s > st_bbox(st) 174s xmin ymin xmax ymax 174s 0.5 0.5 5.0 3.5 174s > 174s > # rectilinear with midpoints given, point support 174s > xd = c(1, 2, 4) 174s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), cell_midpoints = TRUE, point = TRUE) 174s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 174s stars object with 3 dimensions and 1 attribute 174s attribute(s): 174s Min. 1st Qu. Median Mean 3rd Qu. Max. 174s X 1 5.25 9.5 9.5 13.75 18 174s dimension(s): 174s from to offset delta point values x/y 174s x 1 3 NA NA TRUE 1, 2, 4 [x] 174s y 1 3 0.5 1 TRUE NULL [y] 174s band 1 2 NA NA TRUE foo, bar 174s > as.data.frame(st, add_max=FALSE)[1:4,] 174s x y band X 174s 1 1 1 foo 1 174s 2 2 1 foo 2 174s 3 4 1 foo 3 174s 4 1 2 foo 4 174s > as.data.frame(st, add_max=TRUE)[1:4,] 174s x y band x_max y_max X 174s 1 1 0.5 foo 1 1.5 1 174s 2 2 0.5 foo 2 1.5 2 174s 3 4 0.5 foo 4 1.5 3 174s 4 1 1.5 foo 1 2.5 4 174s > st_bbox(st) 174s xmin ymin xmax ymax 174s 1.0 0.5 4.0 3.5 174s > 174s > # rectilinear with start/end given: 174s > #xd = stars:::make_intervals(start = c(1,2,4), end = c(2, 4, 8)) 174s > xd = c(1, 2, 4, 8) # one more than dim of the data array 174s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 174s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 174s stars object with 3 dimensions and 1 attribute 174s attribute(s): 174s Min. 1st Qu. Median Mean 3rd Qu. Max. 174s X 1 5.25 9.5 9.5 13.75 18 174s dimension(s): 174s from to offset delta point values x/y 174s x 1 3 NA NA FALSE [1,2), [2,4), [4,8) [x] 174s y 1 3 1 1 FALSE NULL [y] 174s band 1 2 NA NA FALSE foo, bar 174s > as.data.frame(st, add_max=FALSE)[1:4,] 174s x y band X 174s 1 1.5 1.5 foo 1 174s 2 3.0 1.5 foo 2 174s 3 6.0 1.5 foo 3 174s 4 1.5 2.5 foo 4 174s > as.data.frame(st, add_max=TRUE)[1:4,] 174s x y band x_max y_max X 174s 1 1 1 foo 2 2 1 174s 2 2 1 foo 4 2 2 174s 3 4 1 foo 8 2 3 174s 4 1 2 foo 2 3 4 174s > st_bbox(st) 174s xmin ymin xmax ymax 174s 1 1 8 4 174s > 174s > # with sfc: 174s > sfc = st_sfc(st_point(0:1), st_point(2:1), st_point(4:3)) 174s > d = st_dimensions(x = sfc, y = 1:3, band = c("foo", "bar")) 174s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 174s stars object with 3 dimensions and 1 attribute 174s attribute(s): 174s Min. 1st Qu. Median Mean 3rd Qu. Max. 174s X 1 5.25 9.5 9.5 13.75 18 174s dimension(s): 174s from to offset delta point values 174s x 1 3 NA NA TRUE POINT (0 1),...,POINT (4 3) 174s y 1 3 1 1 FALSE NULL 174s band 1 2 NA NA FALSE foo, bar 174s > as.data.frame(st, add_max=FALSE)[1:4,] 174s x y band X 174s 1 POINT (0 1) 1 foo 1 174s 2 POINT (2 1) 1 foo 2 174s 3 POINT (4 3) 1 foo 3 174s 4 POINT (0 1) 2 foo 4 174s > st_as_sf(st, long = TRUE)[1:4,] 174s Simple feature collection with 4 features and 3 fields 174s Geometry type: POINT 174s Dimension: XY 174s Bounding box: xmin: 0 ymin: 1 xmax: 4 ymax: 3 174s CRS: NA 174s y band X x 174s 1 1 foo 1 POINT (0 1) 174s 2 1 foo 2 POINT (2 1) 174s 3 1 foo 3 POINT (4 3) 174s 4 2 foo 4 POINT (0 1) 174s > st_bbox(st) 174s xmin ymin xmax ymax 174s 0 1 4 3 174s > 174s > # rotated/sheared: 174s > d = st_dimensions(x = 1:3, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), affine = c(0.2, -0.2)) 174s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 174s stars object with 3 dimensions and 1 attribute 174s attribute(s): 174s Min. 1st Qu. Median Mean 3rd Qu. Max. 174s X 1 5.25 9.5 9.5 13.75 18 174s dimension(s): 174s from to offset delta point values x/y 174s x 1 3 1 1 FALSE NULL [x] 174s y 1 3 1 1 FALSE NULL [y] 174s band 1 2 NA NA FALSE foo, bar 174s sheared raster with parameters: 0.2 -0.2 174s > as.data.frame(st, add_max=FALSE)[1:4,] 174s x y X 174s 1 1.6 1.4 1 174s 2 2.6 1.2 2 174s 3 3.6 1.0 3 174s 4 1.8 2.4 4 174s > try(as.data.frame(st, add_max=TRUE)[1:4,]) # errors 174s Error in st_coordinates.stars(x, add_max = add_max, center = center, ...) : 174s add_max will not work for rotated/shared rasters 174s > st_bbox(st) 174s xmin ymin xmax ymax 174s 1.0 0.4 4.6 4.0 174s > 174s > # curvilinear: 174s > set.seed(13531) 174s > lon = st_as_stars(matrix(signif(runif(9), 2), 3, 3)) 174s > lat = st_as_stars(matrix(signif(runif(9), 2), 3, 3)) 174s > ll = setNames(c(lon, lat), c("lon", "lat")) 174s > d = st_dimensions(lon = 1:3, lat = 1:3) 174s > a = st_as_stars(list(X = array(1:9, c(3,3))), dimensions = d) 174s > (st = st_as_stars(a, curvilinear = ll)) 174s stars object with 2 dimensions and 1 attribute 174s attribute(s): 174s Min. 1st Qu. Median Mean 3rd Qu. Max. 174s X 1 3 5 5 7 9 174s dimension(s): 174s from to refsys point values x/y 174s lon 1 3 WGS 84 (CRS84) FALSE [3x3] 0.03,...,0.89 [x] 174s lat 1 3 WGS 84 (CRS84) FALSE [3x3] 0.021,...,0.89 [y] 174s curvilinear grid 174s > as.data.frame(st) 174s lon lat X 174s 1 0.89 0.250 1 174s 2 0.64 0.510 2 174s 3 0.30 0.670 3 174s 4 0.69 0.890 4 174s 5 0.47 0.890 5 174s 6 0.26 0.190 6 174s 7 0.57 0.021 7 174s 8 0.27 0.220 8 174s 9 0.03 0.340 9 174s > st_bbox(st) 174s xmin ymin xmax ymax 174s 0.030 0.021 0.890 0.890 174s > 174s > # time regular: 174s > t = as.Date("2019-01-20") + 0:3 174s > d = st_dimensions(t, sfc) 174s > (st = st_as_stars(list(a = matrix(1:12, 4, 3)), dimensions = d)) 174s stars object with 2 dimensions and 1 attribute 174s attribute(s): 174s Min. 1st Qu. Median Mean 3rd Qu. Max. 174s a 1 3.75 6.5 6.5 9.25 12 174s dimension(s): 174s from to offset delta refsys point values 174s X1 1 4 2019-01-20 1 days Date FALSE NULL 174s X2 1 3 NA NA NA TRUE POINT (0 1),...,POINT (4 3) 174s > as.data.frame(st) 174s X1 X2 a 174s 1 2019-01-20 POINT (0 1) 1 174s 2 2019-01-21 POINT (0 1) 2 174s 3 2019-01-22 POINT (0 1) 3 174s 4 2019-01-23 POINT (0 1) 4 174s 5 2019-01-20 POINT (2 1) 5 174s 6 2019-01-21 POINT (2 1) 6 174s 7 2019-01-22 POINT (2 1) 7 174s 8 2019-01-23 POINT (2 1) 8 174s 9 2019-01-20 POINT (4 3) 9 174s 10 2019-01-21 POINT (4 3) 10 174s 11 2019-01-22 POINT (4 3) 11 174s 12 2019-01-23 POINT (4 3) 12 174s > 174s > # time, rectilinear 174s > t = as.Date("2019-01-20") + c(0, 2, 3, 10) 174s > d = st_dimensions(t, sfc) 174s > (st = st_as_stars(list(a = matrix(1:12, 4, 3)), dimensions = d)) 174s stars object with 2 dimensions and 1 attribute 174s attribute(s): 174s Min. 1st Qu. Median Mean 3rd Qu. Max. 174s a 1 3.75 6.5 6.5 9.25 12 174s dimension(s): 174s from to refsys point values 174s X1 1 4 Date FALSE 2019-01-20,...,2019-01-30 174s X2 1 3 NA TRUE POINT (0 1),...,POINT (4 3) 174s > as.data.frame(st) 174s X1 X2 a 174s 1 2019-01-20 POINT (0 1) 1 174s 2 2019-01-22 POINT (0 1) 2 174s 3 2019-01-23 POINT (0 1) 3 174s 4 2019-01-30 POINT (0 1) 4 174s 5 2019-01-20 POINT (2 1) 5 174s 6 2019-01-22 POINT (2 1) 6 174s 7 2019-01-23 POINT (2 1) 7 174s 8 2019-01-30 POINT (2 1) 8 174s 9 2019-01-20 POINT (4 3) 9 174s 10 2019-01-22 POINT (4 3) 10 174s 11 2019-01-23 POINT (4 3) 11 174s 12 2019-01-30 POINT (4 3) 12 174s > 174s BEGIN TEST mdim.R 174s 174s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 174s Copyright (C) 2025 The R Foundation for Statistical Computing 174s Platform: x86_64-pc-linux-gnu 174s 174s R is free software and comes with ABSOLUTELY NO WARRANTY. 174s You are welcome to redistribute it under certain conditions. 174s Type 'license()' or 'licence()' for distribution details. 174s 174s R is a collaborative project with many contributors. 174s Type 'contributors()' for more information and 174s 'citation()' on how to cite R or R packages in publications. 174s 174s Type 'demo()' for some demos, 'help()' for on-line help, or 174s 'help.start()' for an HTML browser interface to help. 174s Type 'q()' to quit R. 174s 174s > Sys.setenv(TZ="") 174s > suppressPackageStartupMessages(library(stars)) 174s > matrix(1:4,2) 174s [,1] [,2] 174s [1,] 1 3 174s [2,] 2 4 174s > m = matrix(1:4,2) 174s > s = st_as_stars(m) 174s > 174s > s = st_set_dimensions(s, st_dimensions(s), xy = NULL) 174s > sfc = st_sfc(st_point(0:1), st_point(3:2)) 174s > s = st_set_dimensions(s, 1, sfc) |> st_set_crs(4326) 174s > tm = as.POSIXct("2023-03-04 12:35") + c(0, 3600) 174s > s = st_set_dimensions(s, 2, tm) 174s > f = tempfile(fileext = ".nc") 174s > write_mdim(s, f, as_float = FALSE) 174s > s2 = read_mdim(f) 174s Warning messages: 174s 1: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 174s GDAL Error 6: SetIndexingVariable() not implemented 174s 2: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 174s GDAL Error 6: SetIndexingVariable() not implemented 174s > #print(s2) 174s > print(all.equal(s, s2, check.attributes = FALSE)) 174s [1] TRUE 174s > print(all.equal(s, s2)) 174s [1] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"refsys\": Component \"input\": 1 string mismatch >" 174s [2] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"refsys\": Component \"wkt\": 1 string mismatch >" 174s [3] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"values\": Attributes: < Component \"crs\": Component \"input\": 1 string mismatch > >" 174s [4] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"values\": Attributes: < Component \"crs\": Component \"wkt\": 1 string mismatch > >" 174s [5] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"offset\": 'tzone' attributes are inconsistent ('' and 'UTC') >" 174s [6] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"point\": 'is.NA' value mismatch: 1 in current 0 in target >" 174s > 174s > st_crs(sfc) = st_crs(s2) 174s > st_crs(s) = st_crs(s2) 174s > tm = as.Date("2023-02-25") + 0:1 174s > sd = st_set_dimensions(s, 2, tm) 174s > print(sd) 174s stars object with 2 dimensions and 1 attribute 174s attribute(s): 174s Min. 1st Qu. Median Mean 3rd Qu. Max. 174s A1 1 1.75 2.5 2.5 3.25 4 174s dimension(s): 174s from to offset delta refsys point values 174s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 174s X2 1 2 2023-02-25 1 days Date FALSE NULL 174s > sd = st_set_dimensions(sd, 1, sfc) 174s > print(sd) 174s stars object with 2 dimensions and 1 attribute 174s attribute(s): 174s Min. 1st Qu. Median Mean 3rd Qu. Max. 174s A1 1 1.75 2.5 2.5 3.25 4 174s dimension(s): 174s from to offset delta refsys point values 174s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 174s X2 1 2 2023-02-25 1 days Date FALSE NULL 174s > f = tempfile(fileext = ".nc") 174s > write_mdim(sd, f) 174s Warning messages: 174s 1: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 174s GDAL Error 6: SetIndexingVariable() not implemented 174s 2: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 174s GDAL Error 6: SetIndexingVariable() not implemented 174s > sd2 = read_mdim(f) 174s > print(sd2) 174s stars object with 2 dimensions and 1 attribute 174s attribute(s): 174s Min. 1st Qu. Median Mean 3rd Qu. Max. 174s A1 1 1.75 2.5 2.5 3.25 4 174s dimension(s): 174s from to offset delta refsys point values 174s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 174s X2 1 2 2023-02-25 1 days Date NA NULL 174s > print(all.equal(sd, sd2, check.attributes = FALSE)) 174s [1] TRUE 174s > print(all.equal(sd, sd2)) 174s [1] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"point\": 'is.NA' value mismatch: 1 in current 0 in target >" 174s > # if (.Platform$OS.type == "unix") { 174s > # print(read_mdim(paste0("/vsizip/", (system.file("zarr/sic_daily_sample.zarr.zip", package = "stars")))) 174s > # } 174s > 174s BEGIN TEST nc.R 174s 174s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 174s Copyright (C) 2025 The R Foundation for Statistical Computing 174s Platform: x86_64-pc-linux-gnu 174s 174s R is free software and comes with ABSOLUTELY NO WARRANTY. 174s You are welcome to redistribute it under certain conditions. 174s Type 'license()' or 'licence()' for distribution details. 174s 174s R is a collaborative project with many contributors. 174s Type 'contributors()' for more information and 174s 'citation()' on how to cite R or R packages in publications. 174s 174s Type 'demo()' for some demos, 'help()' for on-line help, or 174s 'help.start()' for an HTML browser interface to help. 174s Type 'q()' to quit R. 174s 174s > # examples with the sf::nc polygon dataset NOT ABOUT NETCDF's, see e.g. stars.R netcdf.R 174s > suppressPackageStartupMessages(library(sf)) 175s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf")) 175s > m = st_set_geometry(nc, NULL) 175s > n = as.matrix(m[c("BIR74", "SID74", "NWBIR74", "BIR79", "SID79", "NWBIR79")]) 175s > dim(n) = c(county = 100, var = 3, year = 2) 175s > dimnames(n) = list(county = nc$NAME, var = c("BIR", "SID", "NWBIR"), year = c(1974, 1979)) 175s > suppressPackageStartupMessages(library(stars)) 175s > (st = st_as_stars(pop = n)) 175s stars object with 3 dimensions and 1 attribute 175s attribute(s): 175s Min. 1st Qu. Median Mean 3rd Qu. Max. 175s pop 0 8 538 1657.032 1784 30757 175s dimension(s): 175s from to values 175s county 1 100 Ashe,...,Brunswick 175s var 1 3 BIR , SID , NWBIR 175s year 1 2 1974, 1979 175s > foo <- st %>% st_set_dimensions(1, st_geometry(nc)) # %>% st_set_dimensions(3, c(1974, 1979)) 175s > st %>% st_set_dimensions(1, st_geometry(nc)) %>% st_set_dimensions(names = c("geometries", "var", "year")) 175s stars object with 3 dimensions and 1 attribute 175s attribute(s): 175s Min. 1st Qu. Median Mean 3rd Qu. Max. 175s pop 0 8 538 1657.032 1784 30757 175s dimension(s): 175s from to refsys point 175s geometries 1 100 NAD27 FALSE 175s var 1 3 NA NA 175s year 1 2 NA NA 175s values 175s geometries MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 175s var BIR , SID , NWBIR 175s year 1974, 1979 175s > foo 175s stars object with 3 dimensions and 1 attribute 175s attribute(s): 175s Min. 1st Qu. Median Mean 3rd Qu. Max. 175s pop 0 8 538 1657.032 1784 30757 175s dimension(s): 175s from to refsys point 175s county 1 100 NAD27 FALSE 175s var 1 3 NA NA 175s year 1 2 NA NA 175s values 175s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 175s var BIR , SID , NWBIR 175s year 1974, 1979 175s > st_bbox(foo) 175s xmin ymin xmax ymax 175s -84.32385 33.88199 -75.45698 36.58965 175s > (x = st_as_sf(foo)) 175s Simple feature collection with 100 features and 6 fields 175s Geometry type: MULTIPOLYGON 175s Dimension: XY 175s Bounding box: xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965 175s Geodetic CRS: NAD27 175s First 10 features: 175s BIR.1974 SID.1974 NWBIR.1974 BIR.1979 SID.1979 NWBIR.1979 175s 1 1091 1 10 1364 0 19 175s 2 487 0 10 542 3 12 175s 3 3188 5 208 3616 6 260 175s 4 508 1 123 830 2 145 175s 5 1421 9 1066 1606 3 1197 175s 6 1452 7 954 1838 5 1237 175s 7 286 0 115 350 2 139 175s 8 420 0 254 594 2 371 175s 9 968 4 748 1190 2 844 175s 10 1612 1 160 2038 5 176 175s county 175s 1 MULTIPOLYGON (((-81.47276 3... 175s 2 MULTIPOLYGON (((-81.23989 3... 175s 3 MULTIPOLYGON (((-80.45634 3... 175s 4 MULTIPOLYGON (((-76.00897 3... 175s 5 MULTIPOLYGON (((-77.21767 3... 175s 6 MULTIPOLYGON (((-76.74506 3... 175s 7 MULTIPOLYGON (((-76.00897 3... 175s 8 MULTIPOLYGON (((-76.56251 3... 175s 9 MULTIPOLYGON (((-78.30876 3... 175s 10 MULTIPOLYGON (((-80.02567 3... 175s > frac = function(x) x[2] / x[1] 175s > frac2 = function(x) c(sidsr = x[2] / x[1], nwbr = x[3] / x[1]) 175s > frac2an = function(x) c(x[2] / x[1], x[3] / x[1]) 175s > st_apply(foo, c(1,3), frac) 175s stars object with 2 dimensions and 1 attribute 175s attribute(s): 175s Min. 1st Qu. Median Mean 3rd Qu. Max. 175s frac 0 0.001197874 0.001930504 0.002042241 0.002599348 0.00955414 175s dimension(s): 175s from to refsys point 175s county 1 100 NAD27 FALSE 175s year 1 2 NA NA 175s values 175s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 175s year 1974, 1979 175s > st_apply(foo, c(1,3), frac2) 175s stars object with 3 dimensions and 1 attribute 175s attribute(s): 175s Min. 1st Qu. Median Mean 3rd Qu. Max. 175s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 175s dimension(s): 175s from to refsys point 175s frac2 1 2 NA NA 175s county 1 100 NAD27 FALSE 175s year 1 2 NA NA 175s values 175s frac2 sidsr, nwbr 175s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 175s year 1974, 1979 175s > st_apply(foo, c(1,3), frac2an) 175s stars object with 3 dimensions and 1 attribute 175s attribute(s): 175s Min. 1st Qu. Median Mean 3rd Qu. Max. 175s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 175s dimension(s): 175s from to refsys point 175s frac2an 1 2 NA NA 175s county 1 100 NAD27 FALSE 175s year 1 2 NA NA 175s values 175s frac2an NULL 175s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 175s year 1974, 1979 175s > library(abind) 175s > (x = aperm(st_apply(foo, c(1,3), frac2), c(2,3,1))) 175s stars object with 3 dimensions and 1 attribute 175s attribute(s): 175s Min. 1st Qu. Median Mean 3rd Qu. Max. 175s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 175s dimension(s): 175s from to refsys point 175s county 1 100 NAD27 FALSE 175s year 1 2 NA NA 175s frac2 1 2 NA NA 175s values 175s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 175s year 1974, 1979 175s frac2 sidsr, nwbr 175s > y = aperm(st_apply(foo, c(1,3), frac2), c("county","year","frac2")) 175s > all.equal(st_dimensions(x), st_dimensions(y)) 175s [1] TRUE 175s > 175s > split(foo, 2) 175s stars object with 2 dimensions and 3 attributes 175s attribute(s): 175s Min. 1st Qu. Median Mean 3rd Qu. Max. 175s BIR 248 1176.75 2265 3761.770 4450.75 30757 175s SID 0 2.00 5 7.515 9.00 57 175s NWBIR 1 206.00 742 1201.810 1315.75 11631 175s dimension(s): 175s from to refsys point 175s county 1 100 NAD27 FALSE 175s year 1 2 NA NA 175s values 175s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 175s year 1974, 1979 175s > split(foo, 3) 175s stars object with 2 dimensions and 2 attributes 175s attribute(s): 175s Min. 1st Qu. Median Mean 3rd Qu. Max. 175s 1974 0 8 501.5 1452.367 1580.50 21588 175s 1979 0 9 614.0 1861.697 2040.25 30757 175s dimension(s): 175s from to refsys point 175s county 1 100 NAD27 FALSE 175s var 1 3 NA NA 175s values 175s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 175s var BIR , SID , NWBIR 175s > 175s > st_crs(foo) 175s Coordinate Reference System: 175s User input: NAD27 175s wkt: 175s GEOGCRS["NAD27", 175s DATUM["North American Datum 1927", 175s ELLIPSOID["Clarke 1866",6378206.4,294.978698213898, 175s LENGTHUNIT["metre",1]]], 175s PRIMEM["Greenwich",0, 175s ANGLEUNIT["degree",0.0174532925199433]], 175s CS[ellipsoidal,2], 175s AXIS["geodetic latitude (Lat)",north, 175s ORDER[1], 175s ANGLEUNIT["degree",0.0174532925199433]], 175s AXIS["geodetic longitude (Lon)",east, 175s ORDER[2], 175s ANGLEUNIT["degree",0.0174532925199433]], 175s USAGE[ 175s SCOPE["Geodesy."], 175s AREA["North and central America: Antigua and Barbuda - onshore. Bahamas - onshore plus offshore over internal continental shelf only. Belize - onshore. British Virgin Islands - onshore. Canada onshore - Alberta, British Columbia, Manitoba, New Brunswick, Newfoundland and Labrador, Northwest Territories, Nova Scotia, Nunavut, Ontario, Prince Edward Island, Quebec, Saskatchewan and Yukon - plus offshore east coast. Cuba - onshore and offshore. El Salvador - onshore. Guatemala - onshore. Honduras - onshore. Panama - onshore. Puerto Rico - onshore. Mexico - onshore plus offshore east coast. Nicaragua - onshore. United States (USA) onshore and offshore - Alabama, Alaska, Arizona, Arkansas, California, Colorado, Connecticut, Delaware, Florida, Georgia, Idaho, Illinois, Indiana, Iowa, Kansas, Kentucky, Louisiana, Maine, Maryland, Massachusetts, Michigan, Minnesota, Mississippi, Missouri, Montana, Nebraska, Nevada, New Hampshire, New Jersey, New Mexico, New York, North Carolina, North Dakota, Ohio, Oklahoma, Oregon, Pennsylvania, Rhode Island, South Carolina, South Dakota, Tennessee, Texas, Utah, Vermont, Virginia, Washington, West Virginia, Wisconsin and Wyoming - plus offshore . US Virgin Islands - onshore."], 175s BBOX[7.15,167.65,83.17,-47.74]], 175s ID["EPSG",4267]] 175s > plot(foo) 175s > 175s > # subset vector cube: 175s > foo[nc[1]] 175s stars object with 3 dimensions and 1 attribute 175s attribute(s): 175s Min. 1st Qu. Median Mean 3rd Qu. Max. 175s pop 0 8 538 1657.032 1784 30757 175s dimension(s): 175s from to refsys point 175s county 1 100 NAD27 FALSE 175s var 1 3 NA NA 175s year 1 2 NA NA 175s values 175s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 175s var BIR , SID , NWBIR 175s year 1974, 1979 175s > 175s BEGIN TEST plot.R 175s 175s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 175s Copyright (C) 2025 The R Foundation for Statistical Computing 175s Platform: x86_64-pc-linux-gnu 175s 175s R is free software and comes with ABSOLUTELY NO WARRANTY. 175s You are welcome to redistribute it under certain conditions. 175s Type 'license()' or 'licence()' for distribution details. 175s 175s R is a collaborative project with many contributors. 175s Type 'contributors()' for more information and 175s 'citation()' on how to cite R or R packages in publications. 175s 175s Type 'demo()' for some demos, 'help()' for on-line help, or 175s 'help.start()' for an HTML browser interface to help. 175s Type 'q()' to quit R. 175s 175s > suppressPackageStartupMessages(library(stars)) 175s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 175s + data(air) # this loads several datasets in .GlobalEnv 175s + dim(air) 175s + d = st_dimensions(station = st_as_sfc(stations), time = dates) 175s + aq = st_as_stars(list(PM10 = air), dimensions = d) 175s + image(aperm(log(aq), 2:1), main = "NA pattern (white) in PM10 station time series") 175s + st_geometry(aq) 175s + } 176s Geometry set for 70 features 176s Geometry type: POINT 176s Dimension: XY 176s Bounding box: xmin: 6.28107 ymin: 47.80847 xmax: 14.78617 ymax: 54.92497 176s Geodetic CRS: +proj=longlat +datum=WGS84 +no_defs 176s First 5 geometries: 176s POINT (9.585911 53.67057) 176s POINT (9.68503 53.52418) 176s POINT (9.791584 54.07312) 176s POINT (13.64701 52.44775) 176s POINT (13.29635 52.65315) 176s > 176s > csv = system.file("tif/ESACCI-LC-Legend.csv", package = "starsdata") 176s > if (csv != "") { 176s + rgb = read.csv(csv, header = TRUE, sep = ";") 176s + luc = read_stars(system.file("tif/LUC3.tif", package = "starsdata")) 176s + plot(luc, rgb = rgb, axes = TRUE, key.pos = NULL) 176s + } 176s > 176s > # https://github.com/r-spatial/stars/issues/233 : 176s > nc = read_sf(system.file("shape/nc.shp", package = "sf")) 176s > output = st_as_stars(st_bbox(nc), nx = 1, ny = 1, values = 1) 176s > plot(output) 176s > 176s Warning message: 176s In plot.stars(output) : 176s breaks="quantile" leads to a single class; maybe try breaks="equal" instead? 176s BEGIN TEST predict.R 176s 176s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 176s Copyright (C) 2025 The R Foundation for Statistical Computing 176s Platform: x86_64-pc-linux-gnu 176s 176s R is free software and comes with ABSOLUTELY NO WARRANTY. 176s You are welcome to redistribute it under certain conditions. 176s Type 'license()' or 'licence()' for distribution details. 176s 176s R is a collaborative project with many contributors. 176s Type 'contributors()' for more information and 176s 'citation()' on how to cite R or R packages in publications. 176s 176s Type 'demo()' for some demos, 'help()' for on-line help, or 176s 'help.start()' for an HTML browser interface to help. 176s Type 'q()' to quit R. 176s 176s > suppressPackageStartupMessages(library(stars)) 177s > # predict: 177s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 177s > (x = read_stars(tif)) 177s stars object with 3 dimensions and 1 attribute 177s attribute(s): 177s Min. 1st Qu. Median Mean 3rd Qu. Max. 177s L7_ETMs.tif 1 54 69 68.91242 86 255 177s dimension(s): 177s from to offset delta refsys point x/y 177s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 177s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 177s band 1 6 NA NA NA NA 177s > st_crs(x) = st_crs(x) # cleans trailing space 177s > model = lm(x~L7_ETMs.tif, head(as.data.frame(x), 50)) 177s > x = predict(x, model) 177s > 177s > (y = read_stars(tif, proxy = TRUE)) 177s stars_proxy object with 1 attribute in 1 file(s): 177s $L7_ETMs.tif 177s [1] "[...]/L7_ETMs.tif" 177s 177s dimension(s): 177s from to offset delta refsys point x/y 177s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 177s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 177s band 1 6 NA NA NA NA 177s > (yp = predict(y, model)) 177s stars_proxy object with 1 attribute in 1 file(s): 177s $L7_ETMs.tif 177s [1] "[...]/L7_ETMs.tif" 177s 177s dimension(s): 177s from to offset delta refsys point x/y 177s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 177s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 177s band 1 6 NA NA NA NA 177s call_list: 177s [[1]] 177s predict(object = object, model = model) 177s attr(,".Environment") 177s 177s 177s This object has pending lazy operations: dimensions as printed may not reflect this. 177s > all.equal(x, st_as_stars(yp)) 178s [1] TRUE 178s > 178s > yy = st_set_dimensions(y, 3, values = paste0("band", 1:6)) 178s > (y_spl = split(yy, 3)) 178s stars_proxy object with 1 attribute in 1 file(s): 178s $L7_ETMs.tif 178s [1] "[...]/L7_ETMs.tif" 178s 178s dimension(s): 178s from to offset delta refsys point values 178s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 178s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 178s band 1 6 NA NA NA NA band1,...,band6 178s x/y 178s x [x] 178s y [y] 178s band 178s call_list: 178s [[1]] 178s split(x = x, 3) 178s attr(,".Environment") 178s 178s 178s This object has pending lazy operations: dimensions as printed may not reflect this. 178s > as.data.frame(st_as_stars(split(yy, 3)))[1:3,] 178s x y band1 band2 band3 band4 band5 band6 178s 1 288790.5 9120747 69 56 46 79 86 46 178s 2 288819.0 9120747 69 57 49 75 88 49 178s 3 288847.5 9120747 63 52 45 66 75 41 178s > 178s BEGIN TEST proxy.R 178s 178s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 178s Copyright (C) 2025 The R Foundation for Statistical Computing 178s Platform: x86_64-pc-linux-gnu 178s 178s R is free software and comes with ABSOLUTELY NO WARRANTY. 178s You are welcome to redistribute it under certain conditions. 178s Type 'license()' or 'licence()' for distribution details. 178s 178s R is a collaborative project with many contributors. 178s Type 'contributors()' for more information and 178s 'citation()' on how to cite R or R packages in publications. 178s 178s Type 'demo()' for some demos, 'help()' for on-line help, or 178s 'help.start()' for an HTML browser interface to help. 178s Type 'q()' to quit R. 178s 178s > Sys.setenv(TZ="UTC") 178s > suppressPackageStartupMessages(library(sf)) 178s > suppressPackageStartupMessages(library(stars)) 178s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 178s > (r = read_stars(tif, proxy = TRUE)) 178s stars_proxy object with 1 attribute in 1 file(s): 178s $L7_ETMs.tif 178s [1] "[...]/L7_ETMs.tif" 178s 178s dimension(s): 178s from to offset delta refsys point x/y 178s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 178s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 178s band 1 6 NA NA NA NA 178s > if (interactive()) { 178s + plot(r) 178s + } 178s > dim(r) 178s x y band 178s 349 352 6 178s > r[,,,2:3] 178s stars_proxy object with 1 attribute in 1 file(s): 178s $L7_ETMs.tif 178s [1] "[...]/L7_ETMs.tif" 178s 178s dimension(s): 178s from to offset delta refsys point x/y 178s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 178s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 178s band 2 3 NA NA NA NA 178s > r+r 178s stars_proxy object with 1 attribute in 1 file(s): 178s $L7_ETMs.tif 178s [1] "[...]/L7_ETMs.tif" 178s 178s dimension(s): 179s from to offset delta refsys point x/y 179s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 179s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 179s band 1 6 NA NA NA NA 179s call_list: 179s [[1]] 179s e1 + e2 179s attr(,".Environment") 179s 179s 179s This object has pending lazy operations: dimensions as printed may not reflect this. 179s > st_as_stars(sin(r), downsample = 2) 179s stars object with 3 dimensions and 1 attribute 179s attribute(s): 179s Min. 1st Qu. Median Mean 3rd Qu. Max. 179s L7_ETMs.tif -0.9999902 -0.676772 0.0353983 0.01655317 0.7210377 0.9999119 179s dimension(s): 179s from to offset delta refsys point x/y 179s x 1 117 288776 85.01 SIRGAS 2000 / UTM zone 25S FALSE [x] 179s y 1 118 9120761 -85.02 SIRGAS 2000 / UTM zone 25S FALSE [y] 179s band 1 6 NA NA NA NA 179s > aperm(r, c(3,2,1)) 179s stars_proxy object with 1 attribute in 1 file(s): 179s $L7_ETMs.tif 179s [1] "[...]/L7_ETMs.tif" 179s 179s dimension(s): 179s from to offset delta refsys point x/y 179s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 179s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 179s band 1 6 NA NA NA NA 179s call_list: 179s [[1]] 179s aperm(a = a, perm = perm) 179s attr(,".Environment") 179s 179s 179s This object has pending lazy operations: dimensions as printed may not reflect this. 179s > if (interactive()) { 179s + plot(r) 179s + } 179s > (xx = c(r,r)) 179s stars_proxy object with 2 attributes in 2 file(s): 179s $L7_ETMs.tif 179s [1] "[...]/L7_ETMs.tif" 179s 179s $L7_ETMs.tif 179s [1] "[...]/L7_ETMs.tif" 179s 179s dimension(s): 179s from to offset delta refsys point x/y 179s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 179s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 179s band 1 6 NA NA NA NA 179s > st_redimension(xx) 179s stars_proxy object with 1 attribute in 2 file(s): 179s $L7_ETMs.tif.L7_ETMs.tif 179s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 179s 179s dimension(s): 179s from to offset delta refsys point 179s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 179s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 179s band 1 6 NA NA NA NA 179s new_dim 1 2 NA NA NA NA 179s values x/y 179s x NULL [x] 179s y NULL [y] 179s band NULL 179s new_dim L7_ETMs.tif, L7_ETMs.tif 179s > st_as_stars(r) 179s stars object with 3 dimensions and 1 attribute 179s attribute(s): 179s Min. 1st Qu. Median Mean 3rd Qu. Max. 179s L7_ETMs.tif 1 54 69 68.91242 86 255 179s dimension(s): 179s from to offset delta refsys point x/y 179s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 179s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 179s band 1 6 NA NA NA NA 179s > (y = st_apply(r, 1:2, max)) 179s stars_proxy object with 1 attribute in 1 file(s): 179s $L7_ETMs.tif 179s [1] "[...]/L7_ETMs.tif" 179s 179s dimension(s): 179s from to offset delta refsys point x/y 179s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 179s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 179s band 1 6 NA NA NA NA 179s call_list: 179s [[1]] 179s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 179s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 179s attr(,".Environment") 179s 179s 179s This object has pending lazy operations: dimensions as printed may not reflect this. 179s > (yy = st_as_stars(y, downsample = 1)) 179s stars object with 2 dimensions and 1 attribute 179s attribute(s): 179s Min. 1st Qu. Median Mean 3rd Qu. Max. 179s max 55 85 96 99.38568 113 255 179s dimension(s): 179s from to offset delta refsys point x/y 179s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE [x] 179s y 1 176 9120761 -57 SIRGAS 2000 / UTM zone 25S FALSE [y] 179s > (y = adrop(st_apply(r, c("x", "y"), max))) 179s stars_proxy object with 1 attribute in 1 file(s): 179s $L7_ETMs.tif 179s [1] "[...]/L7_ETMs.tif" 179s 179s dimension(s): 179s from to offset delta refsys point x/y 179s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 179s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 179s band 1 6 NA NA NA NA 179s call_list: 179s [[1]] 179s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 179s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 179s attr(,".Environment") 179s 179s 179s [[2]] 179s adrop(x = x, drop = drop) 179s attr(,".Environment") 179s 179s 179s This object has pending lazy operations: dimensions as printed may not reflect this. 179s > (yy = st_as_stars(y, downsample = 1)) 179s stars object with 2 dimensions and 1 attribute 179s attribute(s): 179s Min. 1st Qu. Median Mean 3rd Qu. Max. 179s max 55 85 96 99.38568 113 255 179s dimension(s): 179s from to offset delta refsys point x/y 179s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE [x] 179s y 1 176 9120761 -57 SIRGAS 2000 / UTM zone 25S FALSE [y] 179s > plot(yy) 179s > (y = adrop(st_apply(r, c("x", "band"), max))) 179s stars_proxy object with 1 attribute in 1 file(s): 179s $L7_ETMs.tif 179s [1] "[...]/L7_ETMs.tif" 179s 179s dimension(s): 179s from to offset delta refsys point x/y 179s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 179s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 179s band 1 6 NA NA NA NA 179s call_list: 179s [[1]] 179s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 179s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 179s attr(,".Environment") 179s 179s 179s [[2]] 179s adrop(x = x, drop = drop) 179s attr(,".Environment") 179s 179s 179s This object has pending lazy operations: dimensions as printed may not reflect this. 179s > (yy = st_as_stars(y, downsample = 1)) 179s stars object with 2 dimensions and 1 attribute 179s attribute(s): 179s Min. 1st Qu. Median Mean 3rd Qu. Max. 179s max 77 111 133 137.8505 157 255 179s dimension(s): 179s from to offset delta refsys point 179s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE 179s band 1 6 NA NA NA NA 179s Warning message: 179s In FUN(X[[i]], ...) :> rm(yy) 179s > 179s > (xx = c(r,r)) 179s 179s st_apply on x/y dimensions applied to downsampled image(s) 179s stars_proxy object with 2 attributes in 2 file(s): 179s $L7_ETMs.tif 179s [1] "[...]/L7_ETMs.tif" 179s 179s $L7_ETMs.tif 179s [1] "[...]/L7_ETMs.tif" 179s 179s dimension(s): 179s from to offset delta refsys point x/y 179s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 179s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 179s band 1 6 NA NA NA NA 179s > names(xx) = c("a", "b") 179s > xx["a"] 179s stars_proxy object with 1 attribute in 1 file(s): 179s $a 179s [1] "[...]/L7_ETMs.tif" 179s 179s dimension(s): 179s from to offset delta refsys point x/y 179s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 179s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 179s band 1 6 NA NA NA NA 179s > pt = st_point(c(x = 290462.103109179, y = 9114202.32594085)) 179s > buf = st_buffer(st_sfc(pt, crs = st_crs(r)), 1500) 179s > buf = st_sfc(st_polygon(list(st_buffer(pt, 1500)[[1]], st_buffer(pt, 1000)[[1]])), 179s + crs = st_crs(r)) 179s > r = r[buf] # crops 179s > r = r[buf, epsilon = 1e-5] # crops with shrinked bounding box 179s > 179s > # c: 179s > f = system.file("netcdf/avhrr-only-v2.19810902.nc", package = "starsdata") 179s > if (FALSE && f != "") { 179s + files = c("avhrr-only-v2.19810901.nc", 179s + "avhrr-only-v2.19810902.nc", 179s + "avhrr-only-v2.19810903.nc", 179s + "avhrr-only-v2.19810904.nc", 179s + "avhrr-only-v2.19810905.nc", 179s + "avhrr-only-v2.19810906.nc", 179s + "avhrr-only-v2.19810907.nc", 179s + "avhrr-only-v2.19810908.nc", 179s + "avhrr-only-v2.19810909.nc") 179s + l = list() 179s + for (f in files) { 179s + from = system.file(paste0("netcdf/", f), package = "starsdata") 179s + l[[f]] = read_stars(from, sub = c("sst", "anom"), proxy = TRUE) 179s + } 179s + ret = do.call(c, l) 179s + print(ret) 179s + all = system.file(paste0("netcdf/", files), package = "starsdata") 179s + ret = read_stars(all, sub = c("sst", "anom")) 179s + print(ret) 179s + print(st_redimension(ret)) # collapse the two attributes into new dimension 179s + 179s + try(ret <- c(l[[1]], l[[2]], l[[3]], along = list(times = as.Date("1981-09-01") + 0:2))) 179s + #print(ret) 179s + #ret = adrop(adrop(c(l[[1]], l[[2]], l[[3]], along = "times"))) 179s + #print(ret) 179s + ret <- st_redimension(l[[1]], along = list(times = as.Date("1981-09-01") + 0:1)) 179s + print(ret) 179s + } 179s > 179s > # demonstrate that environments work: 179s > x = read_stars(tif, proxy = TRUE) 179s > f = function(x) { 179s + g = function(xx) { 179s + ndvi = function(z1, z2, z3, z4, z5, z6) (z2-z1)/(z2+z1) 179s + st_apply(xx, 1:2, ndvi) 179s + } 179s + g(x) 179s + } 179s > (x = f(x)) 179s stars_proxy object with 1 attribute in 1 file(s): 179s $L7_ETMs.tif 179s [1] "[...]/L7_ETMs.tif" 179s 179s dimension(s): 179s from to offset delta refsys point x/y 179s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 179s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 179s band 1 6 NA NA NA NA 179s call_list: 179s [[1]] 179s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 179s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 179s attr(,".Environment") 179s 179s 179s This object has pending lazy operations: dimensions as printed may not reflect this. 179s > st_as_stars(x) 179s stars object with 2 dimensions and 1 attribute 179s attribute(s): 179s Min. 1st Qu. Median Mean 3rd Qu. Max. 179s ndvi -0.2828283 -0.1081081 -0.08287293 -0.08464615 -0.05882353 0.09259259 179s dimension(s): 179s from to offset delta refsys point x/y 179s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 179s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 179s > 179s BEGIN TEST raster.R 179s 179s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 179s Copyright (C) 2025 The R Foundation for Statistical Computing 179s Platform: x86_64-pc-linux-gnu 179s 179s R is free software and comes with ABSOLUTELY NO WARRANTY. 179s You are welcome to redistribute it under certain conditions. 179s Type 'license()' or 'licence()' for distribution details. 179s 179s R is a collaborative project with many contributors. 179s Type 'contributors()' for more information and 179s 'citation()' on how to cite R or R packages in publications. 179s 179s Type 'demo()' for some demos, 'help()' for on-line help, or 179s 'help.start()' for an HTML browser interface to help. 179s Type 'q()' to quit R. 179s 179s > options(rgdal_show_exportToProj4_warnings = "none") 179s > suppressPackageStartupMessages(library(stars)) 179s > 179s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require("raster", quietly = TRUE) && 179s + suppressPackageStartupMessages(require("terra", quietly = TRUE))) { 179s + 179s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 179s + (x = read_stars(tif)) 179s + (r = as(x, "Raster")) 179s + (y = st_as_stars(r)) 179s + 179s + # single band: 179s + x = adrop(x[,,,1]) 179s + r = as(x, "Raster") 179s + (y = st_as_stars(r)) 179s + 179s + # proxy: 179s + (x = read_stars(tif, proxy = TRUE)) 179s + (r = as(x, "Raster")) 179s + (y = st_as_stars(r)) 179s + (y2 = st_as_stars(r, proxy = TRUE)) 179s + } 183s stars_proxy object with 1 attribute in 1 file(s): 183s $L7_ETMs.tif 183s [1] "[...]/L7_ETMs.tif" 183s 183s dimension(s): 183s from to offset delta refsys point x/y 183s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 183s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 183s band 1 6 NA NA NA NA 183s > 183s > if (require(terra, quietly = TRUE)) { 183s + ## terra ------------- 183s + stopifnot(require(terra)) 183s + (x = read_stars(tif)) 183s + (r = as(x, "SpatRaster")) 183s + (y = st_as_stars(r)) 183s + 183s + # single band: 183s + x = adrop(x[,,,1]) 183s + r = as(x, "SpatRaster") 183s + (y = st_as_stars(r)) 183s + 183s + # proxy: 183s + (x = read_stars(tif, proxy = TRUE)) 183s + (r = as(x, "SpatRaster")) 183s + (y = st_as_stars(r)) 183s + (y2 = st_as_stars(r, proxy = TRUE)) 183s + 183s + f = system.file("tif/lc.tif", package = "stars") 183s + lc = read_stars(system.file("tif/lc.tif", package = "stars")) 183s + levels(lc[[1]]) 183s + r = rast(lc) 183s + e = attr(lc[[1]], "exclude") 183s + 183s + if (packageVersion("terra") >= "1.5.48") { 183s + 183s + print(all.equal(terra::levels(r)[[1]][,2], terra::levels(rast(f))[[1]][!e,2])) 183s + print(all.equal(terra::coltab(r)[[1]][!e,], terra::coltab(rast(f))[[1]][!e,], check.attributes = FALSE)) 183s + 183s + r<- rast(nrow=10, ncol=10) 183s + set.seed(5) 183s + values(r)<- sample(1:3, size = ncell(r), replace = TRUE) 183s + levels(r) <- data.frame(ID=1:3, category = c("c1", "c2", "c3")) 183s + 183s + r2<- rast(nrow=10, ncol=10) 183s + set.seed(6) 183s + values(r2)<- sample(c(0,2,3), size = ncell(r2), replace = TRUE) 183s + levels(r2) <- data.frame(ID=c(0,2,3), category = c("x1", "x2", "x3")) 183s + 183s + r3<- c(r,r2) 183s + names(r3)<- c("lyr.1", "lyr.2") 183s + 183s + r3_stars<- st_as_stars(r3) 183s + 183s + st_redimension(r3_stars) |> print() 183s + rast(r3_stars) |> levels() |> print() 183s + 183s + m = matrix(1:121, 11, 11) 183s + bb = st_bbox(c(xmin=0, xmax=11, ymin=0, ymax=11)) 183s + s = st_as_stars(bb, values = m) 183s + r = rast(s) 183s + aggregate(r, 2) |> st_as_stars() -> r.s 183s + stopifnot(isTRUE(all.equal(r.s[,1:5,1:5], st_downsample(s, 1, FUN = mean)))) 183s + } 183s + } 183s [1] TRUE 183s [1] TRUE 183s stars object with 3 dimensions and 1 attribute 183s attribute(s): 183s lyr.1.lyr.2 183s c1:34 183s c2:32 183s c3:34 183s x1:28 183s x2:37 183s x3:35 183s dimension(s): 183s from to offset delta refsys values x/y 183s x 1 10 -180 36 WGS 84 (CRS84) NULL [x] 183s y 1 10 90 -18 WGS 84 (CRS84) NULL [y] 183s new_dim 1 2 NA NA NA lyr.1, lyr.2 183s [[1]] 183s IDs categories 183s 1 1 c1 183s 2 2 c2 183s 3 3 c3 183s 183s [[2]] 183s IDs categories 183s 1 0 x1 183s 2 2 x2 183s 3 3 x3 183s 183s > 183s > 183s BEGIN TEST rasterize.R 183s 183s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 183s Copyright (C) 2025 The R Foundation for Statistical Computing 183s Platform: x86_64-pc-linux-gnu 183s 183s R is free software and comes with ABSOLUTELY NO WARRANTY. 183s You are welcome to redistribute it under certain conditions. 183s Type 'license()' or 'licence()' for distribution details. 183s 183s R is a collaborative project with many contributors. 183s Type 'contributors()' for more information and 183s 'citation()' on how to cite R or R packages in publications. 183s 183s Type 'demo()' for some demos, 'help()' for on-line help, or 183s 'help.start()' for an HTML browser interface to help. 183s Type 'q()' to quit R. 183s 183s > suppressPackageStartupMessages(library(stars)) 184s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf")) 184s > (x = st_rasterize(nc)) # default grid: 184s stars object with 2 dimensions and 12 attributes 184s attribute(s): 184s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 184s AREA 0.042 0.108 0.142 1.451932e-01 0.181 0.241 30904 184s PERIMETER 0.999 1.461 1.716 1.786110e+00 2.004 3.640 30904 184s CNTY_ 1825.000 1907.000 1989.000 1.998403e+03 2085.000 2241.000 30904 184s CNTY_ID 1825.000 1907.000 1989.000 1.998403e+03 2085.000 2241.000 30904 184s FIPSNO 37001.000 37049.000 37101.000 3.710042e+04 37153.000 37199.000 30904 184s CRESS_ID 1.000 25.000 51.000 5.071206e+01 77.000 100.000 30904 184s BIR74 248.000 1323.000 2648.000 3.791637e+03 4139.000 21588.000 30904 184s SID74 0.000 3.000 5.000 7.891985e+00 10.000 44.000 30904 184s NWBIR74 1.000 297.000 844.000 1.246210e+03 1396.000 8027.000 30904 184s BIR79 319.000 1606.000 3108.000 4.852046e+03 5400.000 30757.000 30904 184s SID79 0.000 3.000 6.000 9.584098e+00 13.000 57.000 30904 184s NWBIR79 3.000 360.000 1058.000 1.604642e+03 1524.000 11631.000 30904 184s dimension(s): 184s from to offset delta refsys point x/y 184s x 1 461 -84.32 0.01925 NAD27 FALSE [x] 184s y 1 141 36.59 -0.01925 NAD27 FALSE [y] 184s > plot(x, axes = TRUE) 184s > # a bit more customized grid: 184s > (x = st_rasterize(nc, st_as_stars(st_bbox(nc), nx = 100, ny = 50, values = NA_real_))) 184s stars object with 2 dimensions and 12 attributes 184s attribute(s): 184s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 184s AREA 0.042 0.108 0.142 0.145536 0.181 0.241 2373 184s PERIMETER 0.999 1.470 1.716 1.789032 2.004 3.640 2373 184s CNTY_ 1825.000 1908.000 1989.000 1999.761325 2088.000 2241.000 2373 184s CNTY_ID 1825.000 1908.000 1989.000 1999.761325 2088.000 2241.000 2373 184s FIPSNO 37001.000 37049.000 37101.000 37100.327750 37151.000 37199.000 2373 184s CRESS_ID 1.000 25.000 51.000 50.663875 76.000 100.000 2373 184s BIR74 248.000 1323.500 2648.000 3790.530263 4139.000 21588.000 2373 184s SID74 0.000 3.000 5.000 7.905976 10.000 44.000 2373 184s NWBIR74 1.000 289.000 844.000 1246.116483 1396.000 8027.000 2373 184s BIR79 319.000 1606.000 3108.000 4848.231062 5386.000 30757.000 2373 184s SID79 0.000 3.000 6.000 9.574419 13.000 57.000 2373 184s NWBIR79 3.000 360.000 1058.000 1602.740769 1524.000 11631.000 2373 184s dimension(s): 184s from to offset delta refsys point x/y 184s x 1 100 -84.32 0.08867 NAD27 FALSE [x] 184s y 1 50 36.59 -0.05415 NAD27 FALSE [y] 184s > plot(x, axes = TRUE) 184s > (ls = st_sf(a = 1:2, st_sfc(st_linestring(rbind(c(0.1, 0), c(1.1, 1))), st_linestring(rbind(c(0, 0.05), c(1, 0.05)))))) 184s Simple feature collection with 2 features and 1 field 184s Geometry type: LINESTRING 184s Dimension: XY 184s Bounding box: xmin: 0 ymin: 0 xmax: 1.1 ymax: 1 184s CRS: NA 184s a 184s 1 1 184s 2 2 184s c..st_sfc.st_linestring.rbind.c.0.1..0...c.1.1..1.....st_linestring.rbind.c.0..........0.05...c.1..0.05...... 184s 1 LINESTRING (0.1 0, 1.1 1) 184s 2 LINESTRING (0 0.05, 1 0.05) 184s > (grd = st_as_stars(st_bbox(ls), nx = 10, ny = 10, xlim = c(0, 1.0), ylim = c(0, 1), values = NA_real_)) 184s stars object with 2 dimensions and 1 attribute 184s attribute(s): 184s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 184s values NA NA NA NaN NA NA 100 184s dimension(s): 184s from to offset delta x/y 184s x 1 10 0 0.1 [x] 184s y 1 10 1 -0.1 [y] 184s > # the following two plots confirm that (only) the 184s > # upper-left corner is part of the grid cell (when dy is negative), leading 184s > # to a seemingly half-gridcell-shift problem: 184s > ## sf_extSoftVersion()["GDAL"] 184s > plot(st_rasterize(ls, grd), axes = TRUE, reset = FALSE) # ALL_TOUCHED=FALSE; 184s > plot(ls, add = TRUE, col = "red") 184s > plot(st_rasterize(ls, grd, options = "ALL_TOUCHED=TRUE"), axes = TRUE, reset = FALSE) 184s > plot(ls, add = TRUE, col = "red") 184s > # add lines to existing 0 values, summing values in case of multiple lines: 184s > (grd = st_as_stars(st_bbox(ls), nx = 10, ny = 10, xlim = c(0, 1.0), ylim = c(0, 1), values = 0)) 184s stars object with 2 dimensions and 1 attribute 184s attribute(s): 184s Min. 1st Qu. Median Mean 3rd Qu. Max. 184s values 0 0 0 0 0 0 184s dimension(s): 184s from to offset delta x/y 184s x 1 10 0 0.1 [x] 184s y 1 10 1 -0.1 [y] 184s > r = st_rasterize(ls, grd, options = c("MERGE_ALG=ADD", "ALL_TOUCHED=TRUE")) 184s > plot(r, axes = TRUE, reset = FALSE) 184s > plot(ls, add = TRUE, col = "red") 184s > 184s BEGIN TEST rectilinear.R 184s 184s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 184s Copyright (C) 2025 The R Foundation for Statistical Computing 184s Platform: x86_64-pc-linux-gnu 184s 184s R is free software and comes with ABSOLUTELY NO WARRANTY. 184s You are welcome to redistribute it under certain conditions. 184s Type 'license()' or 'licence()' for distribution details. 184s 184s R is a collaborative project with many contributors. 184s Type 'contributors()' for more information and 184s 'citation()' on how to cite R or R packages in publications. 184s 184s Type 'demo()' for some demos, 'help()' for on-line help, or 184s 'help.start()' for an HTML browser interface to help. 184s Type 'q()' to quit R. 184s 184s > suppressPackageStartupMessages(library(stars)) 185s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 185s > x = read_stars(tif) 185s > (xx = x[,c(1:347,349),c(1:350,352),]) # rectilinear: one-but-last row & col missing 185s stars object with 3 dimensions and 1 attribute 185s attribute(s): 185s Min. 1st Qu. Median Mean 3rd Qu. Max. 185s L7_ETMs.tif 1 54 69 68.9915 86 255 185s dimension(s): 185s from to refsys point 185s x 1 348 SIRGAS 2000 / UTM zone 25S FALSE 185s y 1 351 SIRGAS 2000 / UTM zone 25S FALSE 185s band 1 6 NA NA 185s values x/y 185s x [288790.5,288819),...,[298708.5,298737) [x] 185s y [9120747,9120718),...,[9110743,9110715) [y] 185s band NULL 185s > image(xx) # chooses useRaster itself 185s > # see also tidy.R for a ggplot example, leaving out the row. 185s > 185s > m = matrix(1:16, 4, 4) 185s > x = 1:4 185s > y = 2:5 185s > (st = st_as_stars(list(m = m), dimensions = st_dimensions(x = x, y = y))) 185s stars object with 2 dimensions and 1 attribute 185s attribute(s): 185s Min. 1st Qu. Median Mean 3rd Qu. Max. 185s m 1 4.75 8.5 8.5 12.25 16 185s dimension(s): 185s from to offset delta point x/y 185s x 1 4 1 1 FALSE [x] 185s y 1 4 2 1 FALSE [y] 185s > st = st_set_dimensions(st, 1, values = c(1,2,3,4,6)) 185s > st = st_set_dimensions(st, 2, values = c(2,3,4,5,8)) 185s > try(st_set_dimensions(st, 2, values = c(2,3,4,5,8,20))) # one too many 185s > 185s > # $<-.stars: 185s > st$foo = st$m * 2 185s > st 185s stars object with 2 dimensions and 2 attributes 185s attribute(s): 185s Min. 1st Qu. Median Mean 3rd Qu. Max. 185s m 1 4.75 8.5 8.5 12.25 16 185s foo 2 9.50 17.0 17.0 24.50 32 185s dimension(s): 185s from to point values x/y 185s x 1 4 FALSE [1,2),...,[4,6) [x] 185s y 1 4 FALSE [2,3),...,[5,8) [y] 185s > 185s > Error in st_set_dimensions(st, 2, values = c(2, 3, 4, 5, 8, 20)) : 185s length of values ( 6 ) does not match length of dimension 2 ( 4 ) 185s # st_as_sf: 185s > 185s > if (utils::packageVersion("sf") > "0.7.2") { 185s + plot(st_as_sf(st, as_points = FALSE), axes = TRUE) 185s + } 185s > 185s > image(st, text_values = TRUE, axes = TRUE) 185s > 185s BEGIN TEST redimension.R 185s 185s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 185s Copyright (C) 2025 The R Foundation for Statistical Computing 185s Platform: x86_64-pc-linux-gnu 185s 185s R is free software and comes with ABSOLUTELY NO WARRANTY. 185s You are welcome to redistribute it under certain conditions. 185s Type 'license()' or 'licence()' for distribution details. 185s 185s R is a collaborative project with many contributors. 185s Type 'contributors()' for more information and 185s 'citation()' on how to cite R or R packages in publications. 185s 185s Type 'demo()' for some demos, 'help()' for on-line help, or 185s 'help.start()' for an HTML browser interface to help. 185s Type 'q()' to quit R. 185s 185s > suppressPackageStartupMessages(library(stars)) 185s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 185s > r = read_stars(list(a = c(tif,tif), b = c(tif, tif)), proxy = TRUE) 185s > (xx = st_redimension(r, along = list(foo = 1:4))) 185s stars_proxy object with 1 attribute in 4 file(s): 185s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 185s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 185s [4] "[...]/L7_ETMs.tif" 185s 185s dimension(s): 185s from to offset delta refsys point x/y 185s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 185s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 185s band 1 6 NA NA NA NA 185s foo 1 4 1 1 NA NA 185s > (rr = c(xx, xx)) 185s stars_proxy object with 2 attributes in 8 file(s): 185s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 185s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 185s [4] "[...]/L7_ETMs.tif" 185s 185s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 185s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 185s [4] "[...]/L7_ETMs.tif" 185s 185s dimension(s): 185s from to offset delta refsys point x/y 185s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 185s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 185s band 1 6 NA NA NA NA 185s foo 1 4 1 1 NA NA 185s > # st_as_stars(rr) 185s > (rrr = st_redimension(rr, along = list(bar = as.Date(c("2001-01-01", "2002-01-01"))))) 185s stars_proxy object with 1 attribute in 8 file(s): 185s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif.a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 185s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 185s [4] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 185s [7] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 185s 185s dimension(s): 185s from to offset delta refsys point x/y 185s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 185s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 185s band 1 6 NA NA NA NA 185s foo 1 4 1 1 NA NA 185s bar 1 2 2001-01-01 365 days Date NA 185s > (rr = c(a = xx, b = xx)) 185s stars_proxy object with 2 attributes in 8 file(s): 185s $a 185s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 185s [4] "[...]/L7_ETMs.tif" 185s 185s $b 185s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 185s [4] "[...]/L7_ETMs.tif" 185s 185s dimension(s): 185s from to offset delta refsys point x/y 185s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 185s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 185s band 1 6 NA NA NA NA 185s foo 1 4 1 1 NA NA 185s > # st_as_stars(rr) 185s > (rrr = st_redimension(rr, along = list(bar = as.Date(c("2001-01-01", "2002-01-01"))))) 185s stars_proxy object with 1 attribute in 8 file(s): 185s $a.b 185s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 185s [4] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 185s [7] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 185s 185s dimension(s): 186s from to offset delta refsys point x/y 186s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 186s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 186s band 1 6 NA NA NA NA 186s foo 1 4 1 1 NA NA 186s bar 1 2 2001-01-01 365 days Date NA 186s > 186s BEGIN TEST sf.R 186s 186s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 186s Copyright (C) 2025 The R Foundation for Statistical Computing 186s Platform: x86_64-pc-linux-gnu 186s 186s R is free software and comes with ABSOLUTELY NO WARRANTY. 186s You are welcome to redistribute it under certain conditions. 186s Type 'license()' or 'licence()' for distribution details. 186s 186s R is a collaborative project with many contributors. 186s Type 'contributors()' for more information and 186s 'citation()' on how to cite R or R packages in publications. 186s 186s Type 'demo()' for some demos, 'help()' for on-line help, or 186s 'help.start()' for an HTML browser interface to help. 186s Type 'q()' to quit R. 186s 186s > suppressPackageStartupMessages(library(stars)) 186s > library(sf) 186s > #jp2 = system.file("jp2/B01.jp2", package = "stars") 186s > #(x = read_stars(jp2, options = c("OVERVIEW_LEVEL=3"))) 186s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 186s > #(x = read_stars(tif, options = c("OVERVIEW_LEVEL=3"))) # FIXME: breaks on windows 186s > (x = read_stars(tif)[,1:20,1:20]) 186s stars object with 3 dimensions and 1 attribute 186s attribute(s): 186s Min. 1st Qu. Median Mean 3rd Qu. Max. 186s L7_ETMs.tif 17 44 58 58.19667 70 130 186s dimension(s): 186s from to offset delta refsys point x/y 186s x 1 20 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 186s y 1 20 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 186s band 1 6 NA NA NA NA 186s > # names(x) = "L7_ETM" 186s > 186s > # library(abind) 186s > # x = adrop(x) 186s > image(x) 186s > (sfc = st_as_sfc(x, as_points = FALSE)) 186s Geometry set for 400 features 186s Geometry type: POLYGON 186s Dimension: XY 186s Bounding box: xmin: 288776.3 ymin: 9120191 xmax: 289346.3 ymax: 9120761 186s Projected CRS: SIRGAS 2000 / UTM zone 25S 186s First 5 geometries: 186s POLYGON ((288776.3 9120761, 288804.8 9120761, 2... 186s POLYGON ((288804.8 9120761, 288833.3 9120761, 2... 186s POLYGON ((288833.3 9120761, 288861.8 9120761, 2... 186s POLYGON ((288861.8 9120761, 288890.3 9120761, 2... 186s POLYGON ((288890.3 9120761, 288918.8 9120761, 2... 186s > plot(sfc, add =TRUE) 186s > (sfc = st_as_sfc(x, as_points = TRUE)) 186s Geometry set for 400 features 186s Geometry type: POINT 186s Dimension: XY 186s Bounding box: xmin: 288790.5 ymin: 9120205 xmax: 289332 ymax: 9120747 186s Projected CRS: SIRGAS 2000 / UTM zone 25S 186s First 5 geometries: 186s POINT (288790.5 9120747) 186s > plot(sfc, add = TRUE) 186s POINT (288819 9120747) 186s POINT (288847.5 9120747) 186s POINT (288876 9120747) 186s POINT (288904.5 9120747) 186s > 186s > sf = st_as_sf(x, as_points = FALSE) 186s > plot(sf, border = NA) 186s > sf = st_as_sf(x[,,,1], as_points = FALSE, merge = TRUE) 186s Warning message: 186s In CPL_polygonize(file, mask_name, "GTiff", "Memory", "foo", options, : 186s GDAL Message 1: DeprecationWarning: 'Memory' driver is deprecated since GDAL 3.11. Use 'MEM' onwards. Further messages of this type will be suppressed. 186s > plot(sf, border = NA) 186s > 186s > sfc1 <- st_as_sfc(x, as_points = TRUE, use_cpp = TRUE, na.rm = FALSE) 186s > sfc2 <- st_as_sfc(x, as_points = TRUE, use_cpp = FALSE) 186s > identical(sfc1, sfc2) 186s [1] TRUE 186s > 186s > sfc1 <- st_as_sfc(x, as_points = FALSE, use_cpp = TRUE, na.rm = FALSE) 186s > sfc2 <- st_as_sfc(x, as_points = FALSE, use_cpp = FALSE) 186s > identical(sfc1, sfc2) 186s [1] TRUE 186s > 186s > # sf -> stars -> sf 186s > x = st_sfc(st_point(0:1), st_point(1:2), st_point(2:3)) 186s > m = matrix(1:9,3) 186s > colnames(m) = c("a", "b", "c") 186s > foo = st_sf(m, geom = x) 186s > x = st_as_stars(foo) 186s > c(x) 186s stars object with 1 dimensions and 3 attributes 186s attribute(s): 186s Min. 1st Qu. Median Mean 3rd Qu. Max. 186s a 1 1.5 2 2 2.5 3 186s b 4 4.5 5 5 5.5 6 186s c 7 7.5 8 8 8.5 9 186s dimension(s): 186s from to point values 186s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 186s > st_redimension(x) 186s stars object with 2 dimensions and 1 attribute 186s attribute(s): 186s Min. 1st Qu. Median Mean 3rd Qu. Max. 186s a.b.c 1 3 5 5 7 9 186s dimension(s): 186s from to point values 186s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 186s new_dim 1 3 NA a, b, c 186s > c(x, x) 186s stars object with 1 dimensions and 6 attributes 186s attribute(s): 186s Min. 1st Qu. Median Mean 3rd Qu. Max. 186s a 1 1.5 2 2 2.5 3 186s b 4 4.5 5 5 5.5 6 186s c 7 7.5 8 8 8.5 9 186s a.1 1 1.5 2 2 2.5 3 186s b.1 4 4.5 5 5 5.5 6 186s c.1 7 7.5 8 8 8.5 9 186s dimension(s): 186s from to point values 186s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 186s > (y = st_redimension(x, along = list(time = as.Date("2017-11-27") + 0:2))) 186s stars object with 2 dimensions and 1 attribute 186s attribute(s): 186s Min. 1st Qu. Median Mean 3rd Qu. Max. 186s a.b.c 1 3 5 5 7 9 186s dimension(s): 186s from to offset delta refsys point values 186s geom 1 3 NA NA NA TRUE POINT (0 1),...,POINT (2 3) 186s time 1 3 2017-11-27 1 days Date NA NULL 186s > st_as_sf(y) 186s Simple feature collection with 3 features and 3 fields 186s Geometry type: POINT 186s Dimension: XY 186s Bounding box: xmin: 0 ymin: 1 xmax: 2 ymax: 3 186s CRS: NA 186s 2017-11-27 2017-11-28 2017-11-29 geom 186s 1 1 4 7 POINT (0 1) 186s 2 2 5 8 POINT (1 2) 186s 3 3 6 9 POINT (2 3) 186s > st_as_sf(st_as_stars(foo)) 186s Simple feature collection with 3 features and 3 fields 186s Geometry type: POINT 186s Dimension: XY 186s Bounding box: xmin: 0 ymin: 1 xmax: 2 ymax: 3 186s CRS: NA 186s a b c geom 186s 1 1 4 7 POINT (0 1) 186s 2 2 5 8 POINT (1 2) 186s 3 3 6 9 POINT (2 3) 186s > 186s > c(x,x,along=1) # NEEDS FIXING! 186s stars object with 1 dimensions and 3 attributes 186s attribute(s): 186s Min. 1st Qu. Median Mean 3rd Qu. Max. 186s a 1 1.25 2 2 2.75 3 186s b 4 4.25 5 5 5.75 6 186s c 7 7.25 8 8 8.75 9 186s dimension(s): 186s from to point values 186s geom 1 6 TRUE POINT (0 1),...,POINT (2 3) 186s > # st_as_stars.sfc 186s > st_as_stars(st_geometry(st_as_sf(y)), nx = 10, ny = 10, as_points = FALSE) 186s stars object with 2 dimensions and 1 attribute 186s attribute(s): 186s Min. 1st Qu. Median Mean 3rd Qu. Max. 186s values 0 0 0 0.06 0 1 186s dimension(s): 186s from to offset delta x/y 186s x 1 10 0 0.2 [x] 186s y 1 10 3 -0.2 [y] 186s > 186s BEGIN TEST sp.R 186s 186s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 186s Copyright (C) 2025 The R Foundation for Statistical Computing 186s Platform: x86_64-pc-linux-gnu 186s 186s R is free software and comes with ABSOLUTELY NO WARRANTY. 186s You are welcome to redistribute it under certain conditions. 186s Type 'license()' or 'licence()' for distribution details. 186s 186s R is a collaborative project with many contributors. 186s Type 'contributors()' for more information and 186s 'citation()' on how to cite R or R packages in publications. 186s 186s Type 'demo()' for some demos, 'help()' for on-line help, or 186s 'help.start()' for an HTML browser interface to help. 186s Type 'q()' to quit R. 186s 186s > options(rgdal_show_exportToProj4_warnings = "none") 186s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) { 186s + demo(meuse) 186s + # remove +init=xxx 186s + meuse@proj4string = CRS( 186s + "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs" 186s + ) 186s + meuse.grid@proj4string = CRS( 186s + "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs" 186s + ) 186s + 186s + suppressPackageStartupMessages(library(stars)) 186s + (m = st_as_stars(meuse)) 186s + (gr = st_as_stars(meuse.grid)) 186s + 186s + m2 = as(m, "Spatial") 186s + summary(m2) 186s + gr2 = as(gr, "Spatial") 186s + summary(gr2) 186s + 186s + all.equal(meuse, m2, check.attributes = FALSE) 186s + fullgrid(meuse.grid) = TRUE 186s + all.equal(meuse.grid, gr2, check.attributes = FALSE) 186s + 186s + #all.equal(meuse, m2) 186s + #all.equal(meuse.grid, gr2) 186s + } 186s 186s 186s demo(meuse) 186s ---- ~~~~~ 186s 186s > require(sp) 186s 186s > crs = CRS("EPSG:28992") 187s 187s > data("meuse") 187s 187s > coordinates(meuse) <- ~x+y 187s 187s > proj4string(meuse) <- crs 187s 187s > data("meuse.grid") 187s 187s > coordinates(meuse.grid) <- ~x+y 187s 187s > gridded(meuse.grid) <- TRUE 187s 187s > proj4string(meuse.grid) <- crs 187s 187s > data("meuse.riv") 187s 187s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 187s 187s > proj4string(meuse.riv) <- crs 187s 187s > data("meuse.area") 187s 187s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 187s 187s > proj4string(meuse.area) <- crs 187s [1] TRUE 187s > 187s BEGIN TEST spacetime.R 187s 187s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 187s Copyright (C) 2025 The R Foundation for Statistical Computing 187s Platform: x86_64-pc-linux-gnu 187s 187s R is free software and comes with ABSOLUTELY NO WARRANTY. 187s You are welcome to redistribute it under certain conditions. 187s Type 'license()' or 'licence()' for distribution details. 187s 187s R is a collaborative project with many contributors. 187s Type 'contributors()' for more information and 187s 'citation()' on how to cite R or R packages in publications. 187s 187s Type 'demo()' for some demos, 'help()' for on-line help, or 187s 'help.start()' for an HTML browser interface to help. 187s Type 'q()' to quit R. 187s 187s > suppressPackageStartupMessages(library(stars)) 187s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 187s + set.seed(1331) 187s + Sys.setenv(TZ="UTC") 187s + example(STFDF) 187s + 187s + x = st_as_stars(stfdf) 187s + xx = as(x, "STFDF") 187s + 187s + # as.xts.stars: 187s + library(xts) 187s + xts = as.xts(x) 187s + st_as_stars(xts) 187s + st_as_stars(xts, dimensions = st_dimensions(x)) 187s + 187s + library(sp) 187s + pts = SpatialPoints(rbind(c(0,0), c(0,1), c(1,0), c(1,1))) 187s + gridded(pts) = TRUE 187s + 187s + tm = xts(1:10, as.Date("2010-01-01")+0:9) 187s + stfdf = STFDF(pts, tm, data.frame(foo = seq_len(length(pts) * length(tm)))) 187s + x = st_as_stars(stfdf) 187s + xx = as(x, "STFDF") 187s + 187s + x = st_as_stars(as(stfdf, "STSDF")) 187s + } 188s 188s STFDF> sp = cbind(x = c(0,0,1), y = c(0,1,1)) 188s 188s STFDF> row.names(sp) = paste("point", 1:nrow(sp), sep="") 188s 188s STFDF> library(sp) 188s 188s STFDF> sp = SpatialPoints(sp) 188s 188s STFDF> time = as.POSIXct("2010-08-05")+3600*(10:13) 188s 188s STFDF> m = c(10,20,30) # means for each of the 3 point locations 188s 188s STFDF> mydata = rnorm(length(sp)*length(time),mean=rep(m, 4)) 188s 188s STFDF> IDs = paste("ID",1:length(mydata)) 188s 188s STFDF> mydata = data.frame(values = signif(mydata,3), ID=IDs) 188s 188s STFDF> stfdf = STFDF(sp, time, mydata) 188s 188s STFDF> stfdf 188s An object of class "STFDF" 188s Slot "data": 188s values ID 188s 1 9.38 ID 1 188s 2 21.10 ID 2 188s 3 29.80 ID 3 188s 4 11.50 ID 4 188s 5 19.80 ID 5 188s 6 31.20 ID 6 188s 7 10.40 ID 7 188s 8 20.50 ID 8 188s 9 29.80 ID 9 188s 10 10.30 ID 10 188s 11 21.40 ID 11 188s 12 29.40 ID 12 188s 188s Slot "sp": 188s SpatialPoints: 188s x y 188s point1 0 0 188s point2 0 1 188s point3 1 1 188s Coordinate Reference System (CRS) arguments: NA 188s 188s Slot "time": 188s timeIndex 188s 2010-08-05 10:00:00 1 188s 2010-08-05 11:00:00 2 188s 2010-08-05 12:00:00 3 188s 2010-08-05 13:00:00 4 188s 188s Slot "endTime": 188s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 188s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 188s 188s 188s STFDF> stfdf[1:2,] 188s An object of class "STFDF" 188s Slot "data": 188s values ID 188s 1 9.38 ID 1 188s 2 21.10 ID 2 188s 3 11.50 ID 4 188s 4 19.80 ID 5 188s 5 10.40 ID 7 188s 6 20.50 ID 8 188s 7 10.30 ID 10 188s 8 21.40 ID 11 188s 188s Slot "sp": 188s SpatialPoints: 188s x y 188s point1 0 0 188s point2 0 1 188s Coordinate Reference System (CRS) arguments: NA 188s 188s Slot "time": 188s timeIndex 188s 2010-08-05 10:00:00 1 188s 2010-08-05 11:00:00 2 188s 2010-08-05 12:00:00 3 188s 2010-08-05 13:00:00 4 188s 188s Slot "endTime": 188s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 188s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 188s 188s 188s STFDF> stfdf[,1:2] 188s An object of class "STFDF" 188s Slot "data": 188s values ID 188s 1 9.38 ID 1 188s 2 21.10 ID 2 188s 3 29.80 ID 3 188s 4 11.50 ID 4 188s 5 19.80 ID 5 188s 6 31.20 ID 6 188s 188s Slot "sp": 188s SpatialPoints: 188s x y 188s point1 0 0 188s point2 0 1 188s point3 1 1 188s Coordinate Reference System (CRS) arguments: NA 188s 188s Slot "time": 188s timeIndex 188s 2010-08-05 10:00:00 1 188s 2010-08-05 11:00:00 2 188s 188s Slot "endTime": 188s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 188s 188s 188s STFDF> stfdf[,,2] 188s An object of class "STFDF" 188s Slot "data": 188s ID 188s 1 ID 1 188s 2 ID 2 188s 3 ID 3 188s 4 ID 4 188s 5 ID 5 188s 6 ID 6 188s 7 ID 7 188s 8 ID 8 188s 9 ID 9 188s 10 ID 10 188s 11 ID 11 188s 12 ID 12 188s 188s Slot "sp": 188s SpatialPoints: 188s x y 188s point1 0 0 188s point2 0 1 188s point3 1 1 188s Coordinate Reference System (CRS) arguments: NA 188s 188s Slot "time": 188s timeIndex 188s 2010-08-05 10:00:00 1 188s 2010-08-05 11:00:00 2 188s 2010-08-05 12:00:00 3 188s 2010-08-05 13:00:00 4 188s 188s Slot "endTime": 188s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 188s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 188s 188s 188s STFDF> stfdf[,,"values"] 188s An object of class "STFDF" 188s Slot "data": 188s values 188s 1 9.38 188s 2 21.10 188s 3 29.80 188s 4 11.50 188s 5 19.80 188s 6 31.20 188s 7 10.40 188s 8 20.50 188s 9 29.80 188s 10 10.30 188s 11 21.40 188s 12 29.40 188s 188s Slot "sp": 188s SpatialPoints: 188s x y 188s point1 0 0 188s point2 0 1 188s point3 1 1 188s Coordinate Reference System (CRS) arguments: NA 188s 188s Slot "time": 188s timeIndex 188s 2010-08-05 10:00:00 1 188s 2010-08-05 11:00:00 2 188s 2010-08-05 12:00:00 3 188s 2010-08-05 13:00:00 4 188s 188s Slot "endTime": 188s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 188s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 188s 188s 188s STFDF> stfdf[1,] 188s values ID timeIndex 188s 2010-08-05 10:00:00 9.38 ID 1 1 188s 2010-08-05 11:00:00 11.50 ID 4 2 188s 2010-08-05 12:00:00 10.40 ID 7 3 188s 2010-08-05 13:00:00 10.30 ID 10 4 188s 188s STFDF> stfdf[,2] 188s coordinates values ID 188s 1 (0, 0) 11.5 ID 4 188s 2 (0, 1) 19.8 ID 5 188s 3 (1, 1) 31.2 ID 6 188s 188s STFDF> as(stfdf[,,1], "xts") 188s point1 point2 point3 188s 2010-08-05 10:00:00 9.38 21.1 29.8 188s 2010-08-05 11:00:00 11.50 19.8 31.2 188s 2010-08-05 12:00:00 10.40 20.5 29.8 188s 2010-08-05 13:00:00 10.30 21.4 29.4 188s 188s STFDF> as(stfdf[,,2], "xts") 188s point1 point2 point3 188s 2010-08-05 10:00:00 ID 1 ID 2 ID 3 188s 2010-08-05 11:00:00 ID 4 ID 5 ID 6 188s 2010-08-05 12:00:00 ID 7 ID 8 ID 9 188s 2010-08-05 13:00:00 ID 10 ID 11 ID 12 188s 188s STFDF> # examples for [[, [[<-, $ and $<- 188s STFDF> stfdf[[1]] 188s [1] 9.38 21.10 29.80 11.50 19.80 31.20 10.40 20.50 29.80 10.30 21.40 29.40 188s 188s STFDF> stfdf[["values"]] 188s [1] 9.38 21.10 29.80 11.50 19.80 31.20 10.40 20.50 29.80 10.30 21.40 29.40 188s 188s STFDF> stfdf[["newVal"]] <- rnorm(12) 188s 188s STFDF> stfdf$ID 188s [1] "ID 1" "ID 2" "ID 3" "ID 4" "ID 5" "ID 6" "ID 7" "ID 8" "ID 9" 188s [10] "ID 10" "ID 11" "ID 12" 188s 188s STFDF> stfdf$ID = paste("OldIDs", 1:12, sep="") 188s 188s STFDF> stfdf$NewID = paste("NewIDs", 12:1, sep="") 188s 188s STFDF> stfdf 188s An object of class "STFDF" 188s Slot "data": 188s values ID newVal NewID 188s 1 9.38 OldIDs1 -0.3125824 NewIDs12 188s 2 21.10 OldIDs2 -1.0536246 NewIDs11 188s 3 29.80 OldIDs3 -0.7188880 NewIDs10 188s 4 11.50 OldIDs4 -1.0525404 NewIDs9 188s 5 19.80 OldIDs5 -0.8441413 NewIDs8 188s 6 31.20 OldIDs6 1.1420848 NewIDs7 188s 7 10.40 OldIDs7 1.9479070 NewIDs6 188s 8 20.50 OldIDs8 -0.4512836 NewIDs5 188s 9 29.80 OldIDs9 0.6695716 NewIDs4 188s 10 10.30 OldIDs10 0.1269003 NewIDs3 188s 11 21.40 OldIDs11 -0.7273297 NewIDs2 188s 12 29.40 OldIDs12 -0.8151803 NewIDs1 188s 188s Slot "sp": 188s SpatialPoints: 188s x y 188s point1 0 0 188s point2 0 1 188s point3 1 1 188s Coordinate Reference System (CRS) arguments: NA 188s 188s Slot "time": 188s timeIndex 188s 2010-08-05 10:00:00 1 188s 2010-08-05 11:00:00 2 188s 2010-08-05 12:00:00 3 188s 2010-08-05 13:00:00 4 188s 188s Slot "endTime": 188s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 188s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 188s 188s 188s STFDF> x = stfdf[stfdf[1:2,],] 188s 188s STFDF> all.equal(x, stfdf[1:2,]) 188s [1] TRUE 188s 188s STFDF> all.equal(stfdf, stfdf[stfdf,]) # converts character to factor... 188s [1] TRUE 188s Loading required package: zoo 188s 188s Attaching package: 'zoo' 188s 188s The following objects are masked from 'package:base': 188s 188s as.Date, as.Date.numeric 188s 188s only the first attribute will used; maybe use merge() first? 188s > 188s BEGIN TEST spatstat.R 188s 188s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 188s Copyright (C) 2025 The R Foundation for Statistical Computing 188s Platform: x86_64-pc-linux-gnu 188s 188s R is free software and comes with ABSOLUTELY NO WARRANTY. 188s You are welcome to redistribute it under certain conditions. 188s Type 'license()' or 'licence()' for distribution details. 188s 188s R is a collaborative project with many contributors. 188s Type 'contributors()' for more information and 188s 'citation()' on how to cite R or R packages in publications. 188s 188s Type 'demo()' for some demos, 'help()' for on-line help, or 188s 'help.start()' for an HTML browser interface to help. 188s Type 'q()' to quit R. 188s 188s > suppressPackageStartupMessages(library(sf)) 188s > 188s > library(stars) 188s Loading required package: abind 188s > if (suppressPackageStartupMessages(require(spatstat.geom, quietly = TRUE))) { 188s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 188s + s = adrop(read_stars(tif)[,,,1]) > 70 188s + plot(s) 188s + m = as.owin(s) 188s + plot(m) 188s + print(table(m$m)) 188s + } 189s 189s FALSE TRUE 189s 39494 83354 189s > 189s BEGIN TEST stars.R 189s 189s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 189s Copyright (C) 2025 The R Foundation for Statistical Computing 189s Platform: x86_64-pc-linux-gnu 189s 189s R is free software and comes with ABSOLUTELY NO WARRANTY. 189s You are welcome to redistribute it under certain conditions. 189s Type 'license()' or 'licence()' for distribution details. 189s 189s R is a collaborative project with many contributors. 189s Type 'contributors()' for more information and 189s 'citation()' on how to cite R or R packages in publications. 189s 189s Type 'demo()' for some demos, 'help()' for on-line help, or 189s 'help.start()' for an HTML browser interface to help. 189s Type 'q()' to quit R. 189s 189s > Sys.setenv(TZ="UTC") 189s > suppressPackageStartupMessages(library(stars)) 189s > set.seed(13521) # runif 189s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 189s > (x_ = read_stars(c(tif,tif))) # FIXME: not what you'd expect 189s stars object with 3 dimensions and 2 attributes 189s attribute(s): 189s Min. 1st Qu. Median Mean 3rd Qu. Max. 189s L7_ETMs.tif 1 54 69 68.91242 86 255 189s L7_ETMs.tif.1 1 54 69 68.91242 86 255 189s dimension(s): 189s from to offset delta refsys point x/y 189s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 189s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 189s band 1 6 NA NA NA NA 189s > (x = read_stars(tif)) 189s stars object with 3 dimensions and 1 attribute 189s attribute(s): 190s Min. 1st Qu. Median Mean 3rd Qu. Max. 190s L7_ETMs.tif 1 54 69 68.91242 86 255 190s dimension(s): 190s from to offset delta refsys point x/y 190s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 190s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 190s band 1 6 NA NA NA NA 190s > # image(x) 190s > gdal_crs(tif) 190s Coordinate Reference System: 190s User input: PROJCS["SIRGAS 2000 / UTM zone 25S",GEOGCS["SIRGAS 2000",DATUM["Sistema_de_Referencia_Geocentrico_para_las_AmericaS_2000",SPHEROID["GRS 1980",6378137,298.257222101,AUTHORITY["EPSG","7019"]],AUTHORITY["EPSG","6674"]],PRIMEM["Greenwich",0,AUTHORITY["EPSG","8901"]],UNIT["degree",0.0174532925199433,AUTHORITY["EPSG","9122"]],AUTHORITY["EPSG","4674"]],PROJECTION["Transverse_Mercator"],PARAMETER["latitude_of_origin",0],PARAMETER["central_meridian",-33],PARAMETER["scale_factor",0.9996],PARAMETER["false_easting",500000],PARAMETER["false_northing",10000000],UNIT["metre",1,AUTHORITY["EPSG","9001"]],AXIS["Easting",EAST],AXIS["Northing",NORTH],AUTHORITY["EPSG","31985"]] 190s wkt: 190s PROJCRS["SIRGAS 2000 / UTM zone 25S", 190s BASEGEOGCRS["SIRGAS 2000", 190s DATUM["Sistema de Referencia Geocentrico para las AmericaS 2000", 190s ELLIPSOID["GRS 1980",6378137,298.257222101, 190s LENGTHUNIT["metre",1]]], 190s PRIMEM["Greenwich",0, 190s ANGLEUNIT["degree",0.0174532925199433]], 190s ID["EPSG",4674]], 190s CONVERSION["UTM zone 25S", 190s METHOD["Transverse Mercator", 190s ID["EPSG",9807]], 190s PARAMETER["Latitude of natural origin",0, 190s ANGLEUNIT["degree",0.0174532925199433], 190s ID["EPSG",8801]], 190s PARAMETER["Longitude of natural origin",-33, 190s ANGLEUNIT["degree",0.0174532925199433], 190s ID["EPSG",8802]], 190s PARAMETER["Scale factor at natural origin",0.9996, 190s SCALEUNIT["unity",1], 190s ID["EPSG",8805]], 190s PARAMETER["False easting",500000, 190s LENGTHUNIT["metre",1], 190s ID["EPSG",8806]], 190s PARAMETER["False northing",10000000, 190s LENGTHUNIT["metre",1], 190s ID["EPSG",8807]]], 190s CS[Cartesian,2], 190s AXIS["easting",east, 190s ORDER[1], 190s LENGTHUNIT["metre",1]], 190s AXIS["northing",north, 190s ORDER[2], 190s LENGTHUNIT["metre",1]], 190s ID["EPSG",31985]] 190s > plot(x) 190s > plot(x, join_zlim = FALSE) 190s > x %>% st_set_dimensions(names = c('a', 'b', 'c')) 190s stars object with 3 dimensions and 1 attribute 190s attribute(s): 190s Min. 1st Qu. Median Mean 3rd Qu. Max. 190s L7_ETMs.tif 1 54 69 68.91242 86 255 190s dimension(s): 190s from to offset delta refsys point x/y 190s a 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 190s b 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 190s c 1 6 NA NA NA NA 190s > st_get_dimension_values(x, 3) 190s [1] 1 2 3 4 5 6 190s > 190s > (x1 = st_set_dimensions(x, "band", values = c(1,2,3,4,5,7), names = "band_number", point = TRUE)) 190s stars object with 3 dimensions and 1 attribute 190s attribute(s): 190s Min. 1st Qu. Median Mean 3rd Qu. Max. 190s L7_ETMs.tif 1 54 69 68.91242 86 255 190s dimension(s): 190s from to offset delta refsys point values x/y 190s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 190s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 190s band_number 1 6 NA NA NA TRUE 1,...,7 190s > rbind(c(0.45,0.515), c(0.525,0.605), c(0.63,0.69), c(0.775,0.90), c(1.55,1.75), c(2.08,2.35)) %>% 190s + units::set_units(um) -> bw # units::set_units(µm) -> bw 190s > # set bandwidth midpoint: 190s > (x2 = st_set_dimensions(x, "band", values = 0.5 * (bw[,1]+bw[,2]), 190s + names = "bandwidth_midpoint", point = TRUE)) 190s stars object with 3 dimensions and 1 attribute 190s attribute(s): 190s Min. 1st Qu. Median Mean 3rd Qu. Max. 190s L7_ETMs.tif 1 54 69 68.91242 86 255 190s dimension(s): 190s from to offset delta refsys point 190s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 190s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 190s bandwidth_midpoint 1 6 NA NA udunits TRUE 190s values x/y 190s x NULL [x] 190s y NULL [y] 190s bandwidth_midpoint 0.4825 [um],...,2.215 [um] 190s > # set bandwidth intervals: 190s > (x3 = st_set_dimensions(x, "band", values = make_intervals(bw), names = "bandwidth")) 190s stars object with 3 dimensions and 1 attribute 190s attribute(s): 190s Min. 1st Qu. Median Mean 3rd Qu. Max. 190s L7_ETMs.tif 1 54 69 68.91242 86 255 190s dimension(s): 190s from to offset delta refsys point 190s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 190s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 190s bandwidth 1 6 NA NA udunits NA 190s values x/y 190s x NULL [x] 190s y NULL [y] 190s bandwidth [0.45,0.515) [um],...,[2.08,2.35) [um] 190s > 190s > x + x 190s stars object with 3 dimensions and 1 attribute 190s attribute(s): 190s Min. 1st Qu. Median Mean 3rd Qu. Max. 190s L7_ETMs.tif 2 108 138 137.8248 172 510 190s dimension(s): 190s from to offset delta refsys point x/y 190s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 190s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 190s band 1 6 NA NA NA NA 190s > x * x 190s stars object with 3 dimensions and 1 attribute 190s attribute(s): 190s Min. 1st Qu. Median Mean 3rd Qu. Max. 190s L7_ETMs.tif 1 2916 4761 5512.41 7396 65025 190s dimension(s): 190s from to offset delta refsys point x/y 190s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 190s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 190s band 1 6 NA NA NA NA 190s > x[,,,1:3] 190s stars object with 3 dimensions and 1 attribute 190s attribute(s): 190s Min. 1st Qu. Median Mean 3rd Qu. Max. 190s L7_ETMs.tif 21 58 70 70.36041 83 255 190s dimension(s): 190s from to offset delta refsys point x/y 190s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 190s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 190s band 1 3 NA NA NA NA 190s > x[,1:100,100:200,] 190s stars object with 3 dimensions and 1 attribute 190s attribute(s): 190s Min. 1st Qu. Median Mean 3rd Qu. Max. 190s L7_ETMs.tif 13 54 65 67.21531 77 252 190s dimension(s): 190s from to offset delta refsys point x/y 190s x 1 100 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 190s y 100 200 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 190s band 1 6 NA NA NA NA 190s > sqrt(x) 190s stars object with 3 dimensions and 1 attribute 190s attribute(s): 190s Min. 1st Qu. Median Mean 3rd Qu. Max. 190s L7_ETMs.tif 1 7.348469 8.306624 8.094006 9.273618 15.96872 190s dimension(s): 190s from to offset delta refsys point x/y 190s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 190s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 190s band 1 6 NA NA NA NA 190s > st_apply(x, 3, min) 190s stars object with 1 dimensions and 1 attribute 190s attribute(s): 190s Min. 1st Qu. Median Mean 3rd Qu. Max. 190s min 1 3 15 18.5 29.25 47 190s dimension(s): 190s from to 190s band 1 6 190s > st_apply(x, 1:2, max) 191s stars object with 2 dimensions and 1 attribute 191s attribute(s): 191s Min. 1st Qu. Median Mean 3rd Qu. Max. 191s max 55 85 96 99.36018 113 255 191s dimension(s): 191s from to offset delta refsys point x/y 191s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 191s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 191s > st_apply(x, 1:2, range) 191s stars object with 3 dimensions and 1 attribute 191s attribute(s): 191s Min. 1st Qu. Median Mean 3rd Qu. Max. 191s L7_ETMs.tif 1 50 71 72.43565 96 255 191s dimension(s): 191s from to offset delta refsys point x/y 191s range 1 2 NA NA NA NA 191s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 191s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 191s > 191s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 191s > x = read_stars(geomatrix) 191s > y = st_transform(x, st_crs(4326)) 191s > st_coordinates(x)[1:2,] 191s x y 191s 1 1841000 1144000 191s 2 1841002 1143995 191s > 191s > nc = system.file("nc/tos_O1_2001-2002.nc", package = "stars") 191s > if (nc != "" && require(PCICt, quietly = TRUE)) { 191s + print(x <- read_stars(nc)) 191s + print(st_bbox(x)) 191s + s = st_as_stars(st_bbox(x)) # inside = NA 191s + print(st_bbox(s)) 191s + s = st_as_stars(st_bbox(x), inside = TRUE) 191s + print(st_bbox(s)) 191s + s = st_as_stars(st_bbox(x), inside = FALSE) 191s + print(st_bbox(s)) 191s + (s = st_as_stars(st_bbox(x), dy = 1)) 191s + print(st_bbox(s)) 191s + print(identical(st_as_stars(st_bbox(x), dx = 1), st_as_stars(st_bbox(x), dy = 1))) 191s + s = st_as_stars(st_bbox(x), dx = 10) 191s + print(st_bbox(s)) 191s + s = st_as_stars(st_bbox(x), dx = 20) 191s + print(st_bbox(s)) 191s + x1 = x 191s + st_crs(x1) = "OGC:CRS84" 191s + print(identical(st_as_stars(st_bbox(x1), dx = 1), st_as_stars(st_bbox(x1), dx = units::set_units(1, degree)))) 191s + 191s + df = as.data.frame(x) 191s + if (require(units, quietly = TRUE)) 191s + print(units::drop_units(x)) 191s + 191s + print(dimnames(x)) 191s + dimnames(x) <- letters[1:3] 191s + print(dimnames(x)) 191s + } # PCICt 191s > 191s > st_as_stars() 191s stars object with 2 dimensions and 1 attribute 191s attribute(s): 191s Min. 1st Qu. Median Mean 3rd Qu. Max. 191s values 0 0 0 0 0 0 191s dimension(s): 191s from to offset delta refsys x/y 191s x 1 360 -180 1 WGS 84 (CRS84) [x] 191s y 1 180 90 -1 WGS 84 (CRS84) [y] 191s > 191s > # multiple sub-datasets: 191s > nc_red = system.file("nc/reduced.nc", package = "stars") 191s > red = read_stars(nc_red) 191s sst, anom, err, ice, 191s > red 191s stars object with 4 dimensions and 4 attributes 191s attribute(s): 191s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 191s sst [degree_Celsius] -1.80 -0.03 13.655 12.9940841 24.8125 32.97 4448 191s anom [degree_Celsius] -10.16 -0.58 -0.080 -0.1855812 0.2100 2.99 4448 191s err [degree_Celsius] 0.11 0.16 0.270 0.2626872 0.3200 0.84 4448 191s ice [percent] 0.01 0.47 0.920 0.7178118 0.9600 1.00 13266 191s dimension(s): 191s from to offset delta refsys x/y 191s x 1 180 -1 2 NA [x] 191s y 1 90 90 -2 NA [y] 191s zlev 1 1 0 [m] NA NA 191s time 1 1 1981-12-31 UTC NA POSIXct 191s > plot(red) 191s > 191s > x = st_xy2sfc(read_stars(tif)[,1:10,1:10,], as_points = FALSE) 191s > st_bbox(x) 191s xmin ymin xmax ymax 191s 288776.3 9120475.8 289061.3 9120760.8 191s > x = read_stars(tif) 191s > merge(split(x, "band")) 191s stars object with 3 dimensions and 1 attribute 191s attribute(s): 192s Min. 1st Qu. Median Mean 3rd Qu. Max. 192s X1.X2.X3.X4.X5.X6 1 54 69 68.91242 86 255 192s dimension(s): 192s from to offset delta refsys point values 192s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 192s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 192s attributes 1 6 NA NA NA NA X1,...,X6 192s x/y 192s x [x] 192s y [y] 192s attributes 192s > 192s > read_stars(c(tif,tif)) # merges as attributes 192s stars object with 3 dimensions and 2 attributes 192s attribute(s): 192s Min. 1st Qu. Median Mean 3rd Qu. Max. 192s L7_ETMs.tif 1 54 69 68.91242 86 255 192s L7_ETMs.tif.1 1 54 69 68.91242 86 255 192s dimension(s): 192s from to offset delta refsys point x/y 192s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 192s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 192s band 1 6 NA NA NA NA 192s > read_stars(c(tif,tif), along = "sensor") 192s stars object with 4 dimensions and 1 attribute 192s attribute(s), summary of first 1e+05 cells: 192s Min. 1st Qu. Median Mean 3rd Qu. Max. 192s L7_ETMs.tif 47 65 76 77.3419 87 255 192s dimension(s): 192s from to offset delta refsys point x/y 192s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 192s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 192s band 1 6 NA NA NA NA 192s sensor 1 2 NA NA NA NA 192s > read_stars(c(tif,tif), along = 4) 192s stars object with 4 dimensions and 1 attribute 192s attribute(s), summary of first 1e+05 cells: 192s Min. 1st Qu. Median Mean 3rd Qu. Max. 192s L7_ETMs.tif 47 65 76 77.3419 87 255 192s dimension(s): 192s from to offset delta refsys point x/y 192s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 192s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 192s band 1 6 NA NA NA NA 192s new_dim 1 2 NA NA NA NA 192s > read_stars(c(tif,tif), along = "band") 192s stars object with 3 dimensions and 1 attribute 192s attribute(s), summary of first 1e+05 cells: 192s Min. 1st Qu. Median Mean 3rd Qu. Max. 192s L7_ETMs.tif 47 65 76 77.3419 87 255 192s dimension(s): 192s from to offset delta refsys point x/y 192s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 192s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 192s band 1 12 NA NA NA NA 192s > read_stars(c(tif,tif), along = 3) 192s stars object with 3 dimensions and 1 attribute 192s attribute(s), summary of first 1e+05 cells: 192s Min. 1st Qu. Median Mean 3rd Qu. Max. 192s L7_ETMs.tif 47 65 76 77.3419 87 255 192s dimension(s): 192s from to offset delta refsys point x/y 192s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 192s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 192s band 1 12 NA NA NA NA 192s > 192s > # cut: 192s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 192s > x = read_stars(tif) 192s > cut(x, c(0, 50, 100, 255)) 192s stars object with 3 dimensions and 1 attribute 192s attribute(s): 192s L7_ETMs.tif 192s (0,50] :156060 192s (50,100] :503764 192s (100,255]: 77264 192s dimension(s): 192s from to offset delta refsys point x/y 192s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 192s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 192s band 1 6 NA NA NA NA 192s > cut(x[,,,1,drop=TRUE], c(0, 50, 100, 255)) 192s stars object with 2 dimensions and 1 attribute 192s attribute(s): 192s L7_ETMs.tif 192s (0,50] : 1 192s (50,100] :117134 192s (100,255]: 5713 192s dimension(s): 192s from to offset delta refsys point x/y 192s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 192s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 192s > plot(cut(x[,,,1,drop=TRUE], c(0, 50, 100, 255))) 192s > 192s > st_bbox(st_dimensions(x)) 192s xmin ymin xmax ymax 192s 288776.3 9110728.8 298722.8 9120760.8 192s > x[x < 0] = NA 192s > x[is.na(x)] = 0 192s > 192s > # c: 192s > f = system.file("netcdf/avhrr-only-v2.19810902.nc", package = "starsdata") 192s > if (FALSE && f != "") { 192s + files = c("avhrr-only-v2.19810901.nc", 192s + "avhrr-only-v2.19810902.nc", 192s + "avhrr-only-v2.19810903.nc", 192s + "avhrr-only-v2.19810904.nc", 192s + "avhrr-only-v2.19810905.nc", 192s + "avhrr-only-v2.19810906.nc", 192s + "avhrr-only-v2.19810907.nc", 192s + "avhrr-only-v2.19810908.nc", 192s + "avhrr-only-v2.19810909.nc") 192s + l = list() 192s + for (f in files) { 192s + from = system.file(paste0("netcdf/", f), package = "starsdata") 192s + l[[f]] = read_stars(from, sub = c("sst", "anom")) 192s + } 192s + ret = do.call(c, l) 192s + print(ret) 192s + ret = adrop(c(l[[1]], l[[2]], l[[3]], along = list(times = as.Date("1981-09-01") + 0:2))) 192s + print(ret) 192s + #ret = adrop(adrop(c(l[[1]], l[[2]], l[[3]], along = "times"))) 192s + #print(ret) 192s + } 192s > 192s > st_dimensions(list(matrix(1, 4, 4))) # st_dimensions.default 192s from to point values 192s X1 1 1 FALSE 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 192s > 192s > if (FALSE && require("starsdata", quietly = TRUE)) { 192s + # curvilinear: 192s + s5p = system.file( 192s + "sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", 192s + package = "starsdata") 192s + print(s5p) 192s + lat_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/latitude") 192s + lon_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/longitude") 192s + nit_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column") 192s + lat = read_stars(lat_ds) 192s + lon = read_stars(lon_ds) 192s + nit = read_stars(nit_ds) 192s + nit[[1]][nit[[1]] > 9e+36] = NA 192s + 192s + ll = setNames(c(lon, lat), c("x", "y")) 192s + nit.c = st_as_stars(nit, curvilinear = ll) 192s + print(nit.c) 192s + 192s + s5p = system.file( 192s + "sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", 192s + package = "starsdata") 192s + nit.c2 = read_stars(s5p, 192s + sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 192s + curvilinear = c("//PRODUCT/latitude", "//PRODUCT/longitude")) 192s + print(all.equal(nit.c, nit.c2)) 192s + } 192s > 192s BEGIN TEST subset.R 192s 192s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 192s Copyright (C) 2025 The R Foundation for Statistical Computing 192s Platform: x86_64-pc-linux-gnu 192s 192s R is free software and comes with ABSOLUTELY NO WARRANTY. 192s You are welcome to redistribute it under certain conditions. 192s Type 'license()' or 'licence()' for distribution details. 192s 192s R is a collaborative project with many contributors. 192s Type 'contributors()' for more information and 192s 'citation()' on how to cite R or R packages in publications. 192s 192s Type 'demo()' for some demos, 'help()' for on-line help, or 192s 'help.start()' for an HTML browser interface to help. 192s Type 'q()' to quit R. 192s 192s > suppressPackageStartupMessages(library(stars)) 193s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 193s > x = read_stars(tif) 193s > y = st_set_dimensions(x, "band", point = TRUE) 193s > y[,1:10, 1:10, c(1,4,3,2)] 193s stars object with 3 dimensions and 1 attribute 193s attribute(s): 193s Min. 1st Qu. Median Mean 3rd Qu. Max. 193s L7_ETMs.tif 25 45 57 56.535 64 97 193s dimension(s): 193s from to offset delta refsys point values x/y 193s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 193s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 193s band 1 4 NA NA NA TRUE 1,...,2 193s > y = st_set_dimensions(x, "band", point = NA) 193s > y[,1:10, 1:10, c(1,4,3,2)] 193s stars object with 3 dimensions and 1 attribute 193s attribute(s): 193s Min. 1st Qu. Median Mean 3rd Qu. Max. 193s L7_ETMs.tif 25 45 57 56.535 64 97 193s dimension(s): 193s from to offset delta refsys point values x/y 193s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 193s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 193s band 1 4 NA NA NA NA [1,2),...,[2,3) 193s > y = st_set_dimensions(x, "band", point = FALSE) 193s > y[,1:10, 1:10, c(1,4,3,2)] 193s stars object with 3 dimensions and 1 attribute 193s attribute(s): 193s Min. 1st Qu. Median Mean 3rd Qu. Max. 193s L7_ETMs.tif 25 45 57 56.535 64 97 193s dimension(s): 193s from to offset delta refsys point values x/y 193s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 193s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 193s band 1 4 NA NA NA FALSE [1,2),...,[2,3) 193s > y = st_set_dimensions(x, "band", values = letters[1:6]) 193s > y[,1:10, 1:10, c(1,4,3,2)] 193s stars object with 3 dimensions and 1 attribute 193s attribute(s): 193s Min. 1st Qu. Median Mean 3rd Qu. Max. 193s L7_ETMs.tif 25 45 57 56.535 64 97 193s dimension(s): 193s from to offset delta refsys point values x/y 193s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 193s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 193s band 1 4 NA NA NA NA a,...,b 193s > y = st_set_dimensions(x, "band", values = letters[1:6], point = NA) 193s > y[,1:10, 1:10, c(1,4,3,2)] 193s stars object with 3 dimensions and 1 attribute 193s attribute(s): 193s Min. 1st Qu. Median Mean 3rd Qu. Max. 193s L7_ETMs.tif 25 45 57 56.535 64 97 193s dimension(s): 193s from to offset delta refsys point values x/y 193s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 193s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 193s band 1 4 NA NA NA NA a,...,b 193s > y = st_set_dimensions(x, "band", values = letters[1:6], point = TRUE) 193s > y[,1:10, 1:10, c(1,4,3,2)] 193s stars object with 3 dimensions and 1 attribute 193s attribute(s): 193s Min. 1st Qu. Median Mean 3rd Qu. Max. 193s L7_ETMs.tif 25 45 57 56.535 64 97 193s dimension(s): 193s from to offset delta refsys point values x/y 193s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 193s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 193s band 1 4 NA NA NA TRUE a,...,b 193s > 193s BEGIN TEST testthat.R 193s 193s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 193s Copyright (C) 2025 The R Foundation for Statistical Computing 193s Platform: x86_64-pc-linux-gnu 193s 193s R is free software and comes with ABSOLUTELY NO WARRANTY. 193s You are welcome to redistribute it under certain conditions. 193s Type 'license()' or 'licence()' for distribution details. 193s 193s R is a collaborative project with many contributors. 193s Type 'contributors()' for more information and 193s 'citation()' on how to cite R or R packages in publications. 193s 193s Type 'demo()' for some demos, 'help()' for on-line help, or 193s 'help.start()' for an HTML browser interface to help. 193s Type 'q()' to quit R. 193s 193s > ## load dependencies 193s > library(testthat) 193s > suppressPackageStartupMessages(library(stars)) 193s > 193s > ## test package 193s > test_check("stars") 197s [ FAIL 0 | WARN 0 | SKIP 5 | PASS 69 ] 197s 197s == Skipped tests (5) =========================================================== 197s * On CRAN (4): 'test-OpenStreetMap.R:2:3', 'test-ncdf.R:1:1', 197s 'test-ncproxy.R:1:1', 'test-rectilinear.R:89:3' 197s * {cubble} is not installed (1): 'test-cubble.R:2:3' 197s 197s [ FAIL 0 | WARN 0 | SKIP 5 | PASS 69 ] 197s > 197s BEGIN TEST tidy.R 197s 197s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 197s Copyright (C) 2025 The R Foundation for Statistical Computing 197s Platform: x86_64-pc-linux-gnu 197s 197s R is free software and comes with ABSOLUTELY NO WARRANTY. 197s You are welcome to redistribute it under certain conditions. 197s Type 'license()' or 'licence()' for distribution details. 197s 197s R is a collaborative project with many contributors. 197s Type 'contributors()' for more information and 197s 'citation()' on how to cite R or R packages in publications. 197s 197s Type 'demo()' for some demos, 'help()' for on-line help, or 197s 'help.start()' for an HTML browser interface to help. 197s Type 'q()' to quit R. 197s 197s > suppressPackageStartupMessages(library(stars)) 198s > 198s > if (require(dplyr, quietly = TRUE)) { 198s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 198s + x <- read_stars(tif) 198s + (y <- x %>% select(L7_ETMs.tif)) 198s + (y <- x %>% filter(band > 2)) 198s + (z <- x %>% mutate(foo = 2* L7_ETMs.tif)) 198s + x %>% pull(L7_ETMs.tif) %>% class() 198s + x %>% filter(x > 289900) 198s + x %>% slice("x", 50:100) 198s + 198s + suppressPackageStartupMessages(library(ggplot2)) 198s + ggplot() + geom_stars(data = x) + coord_equal() + facet_wrap(~band) 198s + ggplot() + geom_stars(data = x[,c(1:50,52:100),c(1:45, 50:60)]) + 198s + coord_equal() 198s + ggplot() + geom_stars(data = x[,1:10,1:10,1:2], sf = TRUE) + facet_wrap(~band) 198s + 198s + 198s + # see https://github.com/r-spatial/stars/issues/539 : 198s + x <- read_stars(system.file("tif/L7_ETMs.tif", package = "stars")) 198s + y <- transmute(x, L7_ETMs.tif = units::set_units(L7_ETMs.tif, degree_C)) # same as x but with units 198s + 198s + x - slice(x, 'band', 1) # runs as expected, recycling the second object 198s + try(y - slice(x, 'band', 1)) # fails as expected because x is unitless 198s + try(x - slice(y, 'band', 1)) # fails as expected 198s + y - slice(y, 'band', 1) # runs as expected 198s + } 198s 198s Attaching package: 'dplyr' 198s 198s The following objects are masked from 'package:stats': 198s 198s filter, lag 198s 198s The following objects are masked from 'package:base': 198s 198s intersect, setdiff, setequal, union 198s 198s Error in Ops.units(X[[i]], ...) : 198s both operands of the expression should be "units" objects 198s Error in Ops.units(X[[i]], ...) : 198s both operands of the expression should be "units" objects 198s stars object with 3 dimensions and 1 attribute 198s attribute(s): 198s Min. 1st Qu. Median Mean 3rd Qu. Max. 198s L7_ETMs.tif [degree_Celsius] -184 -19 -8 -10.2353 0 131 198s dimension(s): 198s from to offset delta refsys point x/y 198s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 198s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 198s band 1 6 NA NA NA NA 198s > 198s BEGIN TEST transform.R 198s 198s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 198s Copyright (C) 2025 The R Foundation for Statistical Computing 198s Platform: x86_64-pc-linux-gnu 198s 198s R is free software and comes with ABSOLUTELY NO WARRANTY. 198s You are welcome to redistribute it under certain conditions. 198s Type 'license()' or 'licence()' for distribution details. 198s 198s R is a collaborative project with many contributors. 198s Type 'contributors()' for more information and 198s 'citation()' on how to cite R or R packages in publications. 198s 198s Type 'demo()' for some demos, 'help()' for on-line help, or 198s 'help.start()' for an HTML browser interface to help. 198s Type 'q()' to quit R. 198s 198s > suppressPackageStartupMessages(library(stars)) 199s > #suppressPackageStartupMessages(library(lwgeom)) 199s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 199s > (x = read_stars(geomatrix)) 199s stars object with 2 dimensions and 1 attribute 199s attribute(s): 199s Min. 1st Qu. Median Mean 3rd Qu. Max. 199s geomatrix.tif 74 107 123 126.765 132 255 199s dimension(s): 199s from to offset delta refsys point x/y 199s x 1 20 1841002 1.5 WGS 84 / UTM zone 11N TRUE [x] 199s y 1 20 1144003 -1.5 WGS 84 / UTM zone 11N TRUE [y] 199s sheared raster with parameters: -5 -5 199s > new = st_crs(4326) 199s > y = st_transform(x, new) 199s > plot(st_transform(st_as_sfc(st_bbox(x)), new), col = NA, border = 'red') 199s > plot(st_as_sfc(y, as_points=FALSE), col = NA, border = 'green', axes = TRUE, add = TRUE) 199s > image(y, add = TRUE) 199s > plot(st_as_sfc(y, as_points=TRUE), pch=3, cex=.5, col = 'blue', add = TRUE) 199s > plot(st_transform(st_as_sfc(x, as_points=FALSE), new), add = TRUE) 199s > 199s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 199s > x = read_stars(tif)[,1:10,1:10,1:3] 199s > x_ = st_transform(x, st_crs(4326)) 199s > ## IGNORE_RDIFF_BEGIN 199s > if (require(lwgeom, quietly = TRUE)) { 199s + x__ = st_transform_proj(x, st_crs(4326)$proj4string) 199s + st_crs(x_) = st_crs(x__) 199s + print(all.equal(x_,x__)) 199s + 199s + # x__ = st_transform(x, x_) #now in st_warp 199s + # all.equal(x_, x__) 199s + 199s + x = st_xy2sfc(x, as_points = FALSE) 199s + (x_ = st_transform(x, st_crs(4326))) 199s + (x__ = st_transform_proj(x, st_crs(4326))) 199s + print(all.equal(x_,x__,check.attributes = FALSE)) 199s + } 199s Linking to liblwgeom 3.0.0beta1 r16016, GEOS 3.13.0, PROJ 9.5.1 199s 199s Attaching package: 'lwgeom' 199s 199s The following object is masked from 'package:sf': 199s 199s st_perimeter 199s 199s [1] TRUE 199s [1] TRUE 199s > ## IGNORE_RDIFF_END 199s > 199s > # nothing to transform: now errs: 199s > try(st_transform(st_as_stars(list(m = matrix(1,10,10))), st_crs(4326))) 199s > try(st_transform_proj(st_as_stars(list(m = matrix(1,10,10))), st_crs(4326))) 199s > Warning messages: 199s 1: In fun(libname, pkgname) : 199s GEOS versions differ: lwgeom has 3.13.0 sf has 3.14.1 199s 2: In fun(libname, pkgname) : 199s PROJ versions differ: lwgeom has 9.5.1 sf has 9.7.0 199s Error in st_transform.stars(st_as_stars(list(m = matrix(1, 10, 10))), : 199s !is.na(st_crs(x)) is not TRUE 199s Error in st_transform_proj.stars(st_as_stars(list(m = matrix(1, 10, 10))), : 199s !is.na(st_crs(x)) is not TRUE 199s 199s BEGIN TEST warp.R 199s 199s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 199s Copyright (C) 2025 The R Foundation for Statistical Computing 199s Platform: x86_64-pc-linux-gnu 199s 199s R is free software and comes with ABSOLUTELY NO WARRANTY. 199s You are welcome to redistribute it under certain conditions. 199s Type 'license()' or 'licence()' for distribution details. 199s 199s R is a collaborative project with many contributors. 199s Type 'contributors()' for more information and 199s 'citation()' on how to cite R or R packages in publications. 199s 199s Type 'demo()' for some demos, 'help()' for on-line help, or 199s 'help.start()' for an HTML browser interface to help. 199s Type 'q()' to quit R. 199s 199s > suppressPackageStartupMessages(library(stars)) 199s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 199s > x = read_stars(geomatrix) 199s > # can stars reproduce what gdal does, by default? 199s > x2 = st_warp(x, use_gdal = TRUE, no_data_value = -9999) 199s > y = st_warp(x, x2) 199s > if (interactive()) { plot(x2, breaks = "equal", axes=TRUE) } 199s > if (interactive()) { plot(y, breaks = "equal", axes=TRUE) } 199s > names(x2) = names(y) 199s > all.equal(x2, y) # yes? 199s [1] TRUE 199s > 199s > # does gdal reproduce with stars template object? 199s > (x2 = setNames(st_warp(x, y, use_gdal = TRUE, no_data_value=-1), "file.tif")) 199s stars object with 2 dimensions and 1 attribute 199s attribute(s): 199s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 199s file.tif 74 115 123 126.4289 132 255 224 199s dimension(s): 199s from to offset delta refsys point x/y 199s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N FALSE [x] 199s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N FALSE [y] 199s > 199s > # does gdal reproduce what stars does, default cell size? 199s > (x2 = st_warp(x, crs = st_crs(x), use_gdal = FALSE)) 199s stars object with 2 dimensions and 1 attribute 199s attribute(s): 199s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 199s geomatrix.tif 74 115 123 126.4289 132 255 224 199s dimension(s): 199s from to offset delta refsys x/y 199s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N [x] 199s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N [y] 199s > (y = setNames(st_warp(x, x2, use_gdal = TRUE, debug = FALSE, no_data_value=-1), "file.tif")) 199s stars object with 2 dimensions and 1 attribute 199s attribute(s): 199s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 199s file.tif 74 115 123 126.4289 132 255 224 199s dimension(s): 199s from to offset delta refsys point x/y 199s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N FALSE [x] 199s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N FALSE [y] 199s > 199s > # try with multiple bands: 199s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 199s > (x1 = read_stars(tif)) 199s stars object with 3 dimensions and 1 attribute 199s attribute(s): 199s Min. 1st Qu. Median Mean 3rd Qu. Max. 199s L7_ETMs.tif 1 54 69 68.91242 86 255 199s dimension(s): 199s from to offset delta refsys point x/y 199s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 199s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 199s band 1 6 NA NA NA NA 199s > tifcp = tempfile(fileext = ".tif") 199s > file.copy(tif, tifcp) 199s [1] TRUE 199s > x1p = read_stars(tifcp, proxy = TRUE) 199s > st_dimensions(x1p) 199s from to offset delta refsys point x/y 199s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 199s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 199s band 1 6 NA NA NA NA 199s > (x1a = st_warp(x1, crs = st_crs(4326))) 199s stars object with 3 dimensions and 1 attribute 199s attribute(s): 199s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 199s L7_ETMs.tif 1 54 69 68.93072 86 255 8778 199s dimension(s): 199s from to offset delta refsys x/y 199s x 1 350 -34.92 0.0002592 WGS 84 [x] 199s y 1 352 -7.95 -0.0002592 WGS 84 [y] 199s band 1 6 NA NA NA 199s > (x1b = setNames(st_warp(x1, x1p, use_gdal = TRUE, no_data_value=-1), "file.tif")) 200s stars object with 3 dimensions and 1 attribute 200s attribute(s): 200s Min. 1st Qu. Median Mean 3rd Qu. Max. 200s file.tif 1 54 69 68.91242 86 255 200s dimension(s): 200s from to offset delta refsys point x/y 200s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 200s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 200s band 1 6 NA NA NA NA 200s > 200s > # does gdal reproduce what stars does? Smaller grid: 200s > x2 = st_warp(x, crs = st_crs(x), use_gdal = FALSE, cellsize = 3) 200s > # x2 = x2[,2:43,2:43] 200s > if (interactive()) { plot(x2, breaks = "equal", axes=TRUE, reset = FALSE) } 200s > if (interactive()) { plot(st_as_sfc(st_bbox(x2)), add = TRUE, col = NA, border = 'red') } 200s > ### doesn't work: FIXME: check with more recent GDAL: 200s > (y = setNames(st_warp(x, x2, use_gdal = TRUE, debug = FALSE, no_data_value=-1), "file.tif")) 200s stars object with 2 dimensions and 1 attribute 200s attribute(s): 200s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 200s file.tif 74 107 123 126.6584 132 255 727 200s dimension(s): 200s from to offset delta refsys point x/y 200s x 1 44 1840902 3 WGS 84 / UTM zone 11N FALSE [x] 200s y 1 44 1144003 -3 WGS 84 / UTM zone 11N FALSE [y] 200s > if (interactive()) { plot(y, breaks = "equal") } 200s > names(x2) = names(y) 200s > # isTRUE(all.equal(x2, y, check.attributes=FALSE)) 200s > m = mean(as.vector(x2[[1]]==y[[1]]), na.rm = TRUE) 200s > u = unique(as.vector(x2[[1]]-y[[1]])) 200s > 200s > g = st_as_stars() 200s > attr(g, "dimensions")$x$offset = 0 200s > g$values = as.vector(t(matrix(seq_len(prod(dim(g))), 180, 360))) 200s > if (interactive()) { plot(g, axes=TRUE) } 200s > a = st_warp(g, st_as_stars(), use_gdal=FALSE) 200s > b = st_warp(g, st_as_stars(), use_gdal=TRUE, no_data_value = -1) 200s > all.equal(a, b, check.attributes = FALSE) 200s [1] TRUE 200s > 200s BEGIN TEST write.R 200s 200s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 200s Copyright (C) 2025 The R Foundation for Statistical Computing 200s Platform: x86_64-pc-linux-gnu 200s 200s R is free software and comes with ABSOLUTELY NO WARRANTY. 200s You are welcome to redistribute it under certain conditions. 200s Type 'license()' or 'licence()' for distribution details. 200s 200s R is a collaborative project with many contributors. 200s Type 'contributors()' for more information and 200s 'citation()' on how to cite R or R packages in publications. 200s 200s Type 'demo()' for some demos, 'help()' for on-line help, or 200s 'help.start()' for an HTML browser interface to help. 200s Type 'q()' to quit R. 200s 200s > suppressPackageStartupMessages(library(stars)) 200s > 200s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 200s > (x = read_stars(tif)) 200s stars object with 3 dimensions and 1 attribute 200s attribute(s): 200s Min. 1st Qu. Median Mean 3rd Qu. Max. 200s L7_ETMs.tif 1 54 69 68.91242 86 255 200s dimension(s): 200s from to offset delta refsys point x/y 200s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 200s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 200s band 1 6 NA NA NA NA 200s > 200s > # write stars object: 200s > write_stars(x, tempfile(), driver = "GTiff") 200s > 200s > # write stars_proxy object: 200s > (x = read_stars(tif, proxy = TRUE)) 200s stars_proxy object with 1 attribute in 1 file(s): 200s $L7_ETMs.tif 200s [1] "[...]/L7_ETMs.tif" 200s 200s dimension(s): 200s from to offset delta refsys point x/y 200s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 200s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 200s band 1 6 NA NA NA NA 200s > write_stars(x, tempfile(), driver = "GTiff") 200s 200s > 201s autopkgtest [17:58:18]: test run-unit-test: -----------------------] 201s autopkgtest [17:58:18]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 201s run-unit-test PASS 201s autopkgtest [17:58:18]: test pkg-r-autopkgtest: preparing testbed 221s Creating nova instance adt-resolute-i386-r-cran-stars-20260129-175456-juju-7f2275-prod-proposed-migration-environment-2-a1783b7b-4f76-4747-96a6-5ec98811453f from image adt/ubuntu-resolute-amd64-server-20260129.img (UUID c052dd91-e629-41e8-9bf0-bad94c4bd713)... 294s autopkgtest [17:59:51]: testbed dpkg architecture: amd64 295s autopkgtest [17:59:52]: testbed apt version: 3.1.14 295s autopkgtest [17:59:52]: @@@@@@@@@@@@@@@@@@@@ test bed setup 295s autopkgtest [17:59:52]: testbed release detected to be: resolute 296s autopkgtest [17:59:53]: updating testbed package index (apt update) 296s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 297s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 297s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 297s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 297s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [106 kB] 297s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [25.4 kB] 297s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 297s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1073 kB] 297s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [133 kB] 297s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [115 kB] 297s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [4360 B] 297s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3696 B] 297s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [12.3 kB] 297s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 297s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [357 kB] 297s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [874 kB] 297s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [23.0 kB] 297s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [3336 B] 297s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [23.2 kB] 297s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [1036 B] 298s Fetched 2882 kB in 1s (2833 kB/s) 299s Reading package lists... 299s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 299s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 299s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 299s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 300s Reading package lists... 300s Reading package lists... 300s Building dependency tree... 300s Reading state information... 300s Calculating upgrade... 300s The following packages will be upgraded: 300s libsgutils2-1.48 sg3-utils sg3-utils-udev 300s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 300s Need to get 1147 kB of archives. 300s After this operation, 0 B of additional disk space will be used. 300s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libsgutils2-1.48 amd64 1.48-3ubuntu2 [120 kB] 300s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 sg3-utils amd64 1.48-3ubuntu2 [1020 kB] 301s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 sg3-utils-udev all 1.48-3ubuntu2 [6610 B] 301s dpkg-preconfigure: unable to re-open stdin: No such file or directory 301s Fetched 1147 kB in 0s (3930 kB/s) 301s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124211 files and directories currently installed.) 301s Preparing to unpack .../libsgutils2-1.48_1.48-3ubuntu2_amd64.deb ... 301s Unpacking libsgutils2-1.48:amd64 (1.48-3ubuntu2) over (1.48-3ubuntu1) ... 301s Preparing to unpack .../sg3-utils_1.48-3ubuntu2_amd64.deb ... 301s Unpacking sg3-utils (1.48-3ubuntu2) over (1.48-3ubuntu1) ... 301s Preparing to unpack .../sg3-utils-udev_1.48-3ubuntu2_all.deb ... 301s Unpacking sg3-utils-udev (1.48-3ubuntu2) over (1.48-3ubuntu1) ... 301s Setting up libsgutils2-1.48:amd64 (1.48-3ubuntu2) ... 301s Setting up sg3-utils (1.48-3ubuntu2) ... 301s Setting up sg3-utils-udev (1.48-3ubuntu2) ... 301s update-initramfs: deferring update (trigger activated) 301s Processing triggers for libc-bin (2.42-2ubuntu4) ... 301s Processing triggers for man-db (2.13.1-1) ... 301s Processing triggers for initramfs-tools (0.150ubuntu7) ... 302s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 307s autopkgtest [18:00:04]: upgrading testbed (apt dist-upgrade and autopurge) 307s Reading package lists... 307s Building dependency tree... 307s Reading state information... 307s Calculating upgrade... 307s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 307s Reading package lists... 307s Building dependency tree... 307s Reading state information... 307s Solving dependencies... 308s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 308s autopkgtest [18:00:05]: rebooting testbed after setup commands that affected boot 338s Reading package lists... 338s Building dependency tree... 338s Reading state information... 338s Solving dependencies... 339s The following NEW packages will be installed: 339s build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu 339s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 339s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-15 339s g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-15 339s gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu gdal-data gdal-plugins gfortran 339s gfortran-15 gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu 339s icu-devtools javascript-common libabsl20260107 libaec0 libaom3 339s libarmadillo15 libarpack2t64 libasan8 libavif16 libblas-dev libblas3 339s libblosc1 libbz2-dev libcairo2 libcc1-0 libcfitsio10t64 libdatrie1 libdav1d7 339s libde265-0 libdeflate-dev libdeflate0 libfontconfig1 libfreexl1 libfyba0t64 339s libgav1-2 libgcc-15-dev libgdal38 libgeos-c1t64 libgeos3.14.1 libgeotiff5 339s libgfortran-15-dev libgfortran5 libgif7 libgomp1 libgpgmepp6t64 339s libgraphite2-3 libharfbuzz0b libhdf4-0 libhdf5-310 libhdf5-hl-310 339s libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libhwasan0 libhwy1t64 339s libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 339s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 339s libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 339s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 339s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 339s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker libjxl0.11 339s libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack-dev liblapack3 339s liblcms2-2 liblerc4 liblsan0 libltdl7 liblua5.4-0 liblzma-dev libminizip1t64 339s libmpc3 libmuparser2v5 libmysqlclient24 libncurses-dev libnetcdf22 libodbc2 339s libodbcinst2 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 339s libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 339s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 339s libpoppler147 libpq5 libproj25 libqhull-r8.0 libquadmath0 libreadline-dev 339s librttopo1 libsharpyuv0 libsm6 libsnappy1v5 libspatialite8t64 339s libstdc++-15-dev libsuperlu7 libsz2 libtcl8.6 libthai-data libthai0 libtiff6 339s libtirpc-dev libtk8.6 libtsan2 libubsan1 libudunits2-0 libudunits2-data 339s liburiparser1 libwebp7 libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 339s libxrender1 libxss1 libxt6t64 libyuv0 libzstd-dev mysql-common 339s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 339s pkg-r-autopkgtest pkgconf pkgconf-bin proj-data r-base-core r-base-dev 339s r-cran-abind r-cran-areal r-cran-askpass r-cran-base64enc r-cran-bdsmatrix 339s r-cran-brio r-cran-bslib r-cran-cachem r-cran-cairo r-cran-callr 339s r-cran-cftime r-cran-class r-cran-classint r-cran-cli r-cran-clue 339s r-cran-cluster r-cran-codetools r-cran-collapse r-cran-commonmark 339s r-cran-covr r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-deldir 339s r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 339s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fnn 339s r-cran-fontawesome r-cran-formula r-cran-fs r-cran-future 339s r-cran-future.apply r-cran-generics r-cran-ggforce r-cran-ggplot2 339s r-cran-ggthemes r-cran-globals r-cran-glue r-cran-goftest r-cran-gridextra 339s r-cran-gtable r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr 339s r-cran-intervals r-cran-isoband r-cran-jquerylib r-cran-jsonlite 339s r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice 339s r-cran-lazyeval r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lmtest 339s r-cran-lwgeom r-cran-magrittr r-cran-mapdata r-cran-maps r-cran-mass 339s r-cran-matrix r-cran-maxlik r-cran-memoise r-cran-mgcv r-cran-mime 339s r-cran-misctools r-cran-ncdfgeom r-cran-ncmeta r-cran-nlme r-cran-openssl 339s r-cran-parallelly r-cran-pbapply r-cran-pcict r-cran-pillar r-cran-pkgbuild 339s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plm r-cran-polyclip 339s r-cran-praise r-cran-processx r-cran-promises r-cran-proxy r-cran-ps 339s r-cran-purrr r-cran-r6 r-cran-randomforest r-cran-rappdirs r-cran-raster 339s r-cran-rbibutils r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen 339s r-cran-rdpack r-cran-rex r-cran-rlang r-cran-rmarkdown r-cran-rnetcdf 339s r-cran-rpart r-cran-rprojroot r-cran-s2 r-cran-sandwich r-cran-sass 339s r-cran-scales r-cran-sf r-cran-shiny r-cran-sourcetools r-cran-sp 339s r-cran-spacetime r-cran-spatstat r-cran-spatstat.data 339s r-cran-spatstat.explore r-cran-spatstat.geom r-cran-spatstat.linnet 339s r-cran-spatstat.model r-cran-spatstat.random r-cran-spatstat.sparse 339s r-cran-spatstat.univar r-cran-spatstat.utils r-cran-stars r-cran-stringi 339s r-cran-stringr r-cran-survival r-cran-sys r-cran-systemfonts r-cran-tensor 339s r-cran-terra r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 339s r-cran-tinytex r-cran-tweenr r-cran-units r-cran-utf8 r-cran-vctrs 339s r-cran-viridis r-cran-viridislite r-cran-waldo r-cran-withr r-cran-wk 339s r-cran-xfun r-cran-xtable r-cran-xts r-cran-yaml r-cran-zoo unixodbc-common 339s unzip x11-common xdg-utils zip zlib1g-dev 339s 0 upgraded, 344 newly installed, 0 to remove and 0 not upgraded. 339s Need to get 401 MB of archives. 339s After this operation, 1153 MB of additional disk space will be used. 339s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB] 339s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB] 339s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-11ubuntu1 [12.9 MB] 339s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-11ubuntu1 [1030 B] 339s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B] 339s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB] 339s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 15.2.0-11ubuntu1 [47.4 kB] 339s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-11ubuntu1 [151 kB] 339s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 15.2.0-11ubuntu1 [29.5 kB] 339s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 15.2.0-11ubuntu1 [3070 kB] 339s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 15.2.0-11ubuntu1 [1360 kB] 339s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 15.2.0-11ubuntu1 [2757 kB] 339s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 15.2.0-11ubuntu1 [1210 kB] 340s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 15.2.0-11ubuntu1 [1685 kB] 340s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 15.2.0-11ubuntu1 [153 kB] 340s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-11ubuntu1 [2863 kB] 340s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-11ubuntu1 [25.4 MB] 341s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-11ubuntu1 [528 kB] 341s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B] 341s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B] 341s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-11ubuntu1 [2574 kB] 341s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-11ubuntu1 [14.4 MB] 341s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-11ubuntu1 [24.6 kB] 341s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B] 341s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B] 341s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B] 341s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 dctrl-tools amd64 2.24-3build4 [104 kB] 341s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 341s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 341s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB] 341s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB] 341s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB] 341s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 342s Get:34 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 342s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 342s Get:36 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-data all 3.12.1+dfsg-1 [278 kB] 342s Get:37 http://ftpmaster.internal/ubuntu resolute/universe amd64 gdal-plugins amd64 3.12.1+dfsg-1 [26.8 kB] 342s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-11ubuntu1 [939 kB] 342s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-11ubuntu1 [972 kB] 342s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-11ubuntu1 [13.6 MB] 342s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-11ubuntu1 [17.9 kB] 342s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1014 B] 342s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran amd64 4:15.2.0-4ubuntu1 [1172 B] 342s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB] 342s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 javascript-common all 12+nmu1 [4828 B] 342s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libabsl20260107 amd64 20260107.0-0ubuntu2 [587 kB] 342s Get:47 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.5-1 [22.5 kB] 342s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libaom3 amd64 3.13.1-2 [1970 kB] 342s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 342s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 342s Get:51 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarpack2t64 amd64 3.9.1-6 [108 kB] 342s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsuperlu7 amd64 7.0.1+dfsg1-2 [186 kB] 342s Get:53 http://ftpmaster.internal/ubuntu resolute/universe amd64 libarmadillo15 amd64 1:15.2.1+dfsg-2 [109 kB] 342s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 libdav1d7 amd64 1.5.3-1 [626 kB] 342s Get:55 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgav1-2 amd64 0.20.0-2build1 [402 kB] 342s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 343s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 343s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libyuv0 amd64 0.0.1922.20260106-1 [184 kB] 343s Get:59 http://ftpmaster.internal/ubuntu resolute/universe amd64 libavif16 amd64 1.3.0-1ubuntu3 [117 kB] 343s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas-dev amd64 3.12.1-7ubuntu1 [235 kB] 343s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libsnappy1v5 amd64 1.2.2-2 [30.8 kB] 343s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 libblosc1 amd64 1.21.5+ds-2 [35.8 kB] 343s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-dev amd64 1.0.8-6build1 [37.0 kB] 343s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 343s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB] 343s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B] 343s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 343s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 343s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 libcfitsio10t64 amd64 4.6.3-1 [549 kB] 343s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB] 343s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libde265-0 amd64 1.0.16-1build1 [172 kB] 343s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 343s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate-dev amd64 1.23-2 [56.8 kB] 343s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfyba0t64 amd64 4.1.1-11build2 [120 kB] 343s Get:75 http://ftpmaster.internal/ubuntu resolute/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [23.5 kB] 343s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 libfreexl1 amd64 2.0.0-1build3 [42.9 kB] 343s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos3.14.1 amd64 3.14.1-2 [976 kB] 343s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeos-c1t64 amd64 3.14.1-2 [116 kB] 343s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 proj-data all 9.7.1-1 [7950 kB] 343s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 343s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 343s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 343s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 343s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 343s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 libproj25 amd64 9.7.1-1 [1499 kB] 343s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgeotiff5 amd64 1.7.4-1 [60.2 kB] 343s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 libgif7 amd64 5.2.2-1ubuntu3 [36.0 kB] 343s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.5-1 [17.9 kB] 343s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf4-0 amd64 4.3.1-2 [318 kB] 343s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.6+repack-2 [1433 kB] 343s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-aomdec amd64 1.21.2-1 [14.2 kB] 343s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif-plugin-libde265 amd64 1.21.2-1 [9978 B] 343s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 libheif1 amd64 1.21.2-1 [544 kB] 343s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwy1t64 amd64 1.3.0-2 [768 kB] 343s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.17-1 [170 kB] 343s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 libjxl0.11 amd64 0.11.1-6ubuntu1 [1122 kB] 343s Get:97 http://ftpmaster.internal/ubuntu resolute/universe amd64 liburiparser1 amd64 0.9.8+dfsg-2 [46.8 kB] 343s Get:98 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlbase1t64 amd64 1.3.0-13 [51.7 kB] 343s Get:99 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmldom1t64 amd64 1.3.0-13 [156 kB] 343s Get:100 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkmlengine1t64 amd64 1.3.0-13 [74.1 kB] 343s Get:101 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmuparser2v5 amd64 2.3.4-2 [143 kB] 343s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 mysql-common all 5.8+1.1.1ubuntu2 [7002 B] 344s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 libmysqlclient24 amd64 8.4.8-0ubuntu1 [1258 kB] 344s Get:104 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.6+repack-2 [59.9 kB] 344s Get:105 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnetcdf22 amd64 1:4.9.3-1build1 [561 kB] 344s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libltdl7 amd64 2.5.4-9 [43.7 kB] 344s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbc2 amd64 2.3.14-1 [160 kB] 344s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 unixodbc-common all 2.3.14-1 [8792 B] 344s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 libodbcinst2 amd64 2.3.14-1 [32.0 kB] 344s Get:110 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.4-1 [188 kB] 344s Get:111 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpgmepp6t64 amd64 1.24.2-3ubuntu2 [124 kB] 344s Get:112 http://ftpmaster.internal/ubuntu resolute/main amd64 libpoppler147 amd64 25.03.0-11.1 [1224 kB] 344s Get:113 http://ftpmaster.internal/ubuntu resolute/main amd64 libpq5 amd64 18.1-2 [155 kB] 344s Get:114 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-8 [197 kB] 344s Get:115 http://ftpmaster.internal/ubuntu resolute/universe amd64 librttopo1 amd64 1.1.0-4 [205 kB] 344s Get:116 http://ftpmaster.internal/ubuntu resolute/universe amd64 libspatialite8t64 amd64 5.1.0-3ubuntu1 [1927 kB] 344s Get:117 http://ftpmaster.internal/ubuntu resolute/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3build2 [991 kB] 344s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 libgdal38 amd64 3.12.1+dfsg-1 [11.4 MB] 344s Get:119 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 344s Get:120 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.1-1 [519 kB] 344s Get:121 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 344s Get:122 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB] 344s Get:123 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB] 345s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8-dev amd64 2.1.5-4ubuntu2 [296 kB] 345s Get:125 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 345s Get:126 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 345s Get:127 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 345s Get:128 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB] 345s Get:129 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 345s Get:130 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-d3 all 3.5.17-4build1 [136 kB] 345s Get:131 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 345s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 345s Get:133 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 345s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 345s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 345s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B] 345s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 345s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB] 345s Get:139 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB] 345s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-prettify all 2015.12.04+dfsg-2 [41.3 kB] 345s Get:141 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack-dev amd64 3.12.1-7ubuntu1 [5433 kB] 345s Get:142 http://ftpmaster.internal/ubuntu resolute/main amd64 liblua5.4-0 amd64 5.4.8-1 [174 kB] 345s Get:143 http://ftpmaster.internal/ubuntu resolute/main amd64 libncurses-dev amd64 6.6+20251231-1 [389 kB] 345s Get:144 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB] 345s Get:145 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB] 345s Get:146 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB] 345s Get:147 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB] 345s Get:148 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB] 345s Get:149 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB] 345s Get:150 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB] 345s Get:151 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB] 345s Get:152 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB] 345s Get:153 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-posix3 amd64 10.46-1 [7354 B] 345s Get:154 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-dev amd64 10.46-1 [832 kB] 345s Get:155 http://ftpmaster.internal/ubuntu resolute/main amd64 libpkgconf3 amd64 1.8.1-4build1 [32.8 kB] 345s Get:156 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB] 345s Get:157 http://ftpmaster.internal/ubuntu resolute/main amd64 libpng-dev amd64 1.6.54-1 [273 kB] 345s Get:158 http://ftpmaster.internal/ubuntu resolute/main amd64 libreadline-dev amd64 8.3-3 [189 kB] 345s Get:159 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1 [16.4 kB] 345s Get:160 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1036 kB] 345s Get:161 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 345s Get:162 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 345s Get:163 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 345s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-data all 2.2.28-8 [19.3 kB] 345s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 libudunits2-0 amd64 2.2.28-8 [54.6 kB] 345s Get:166 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB] 345s Get:167 http://ftpmaster.internal/ubuntu resolute/main amd64 libzstd-dev amd64 1.5.7+dfsg-2 [376 kB] 345s Get:168 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 345s Get:169 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 345s Get:170 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 345s Get:171 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 345s Get:172 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc amd64 3.1.11.1+ds-4 [27.2 MB] 347s Get:173 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu2 [178 kB] 347s Get:174 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB] 347s Get:175 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 347s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB] 348s Get:177 http://ftpmaster.internal/ubuntu resolute/main amd64 liblzma-dev amd64 5.8.2-2 [179 kB] 348s Get:178 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf-bin amd64 1.8.1-4build1 [21.7 kB] 348s Get:179 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf amd64 1.8.1-4build1 [16.8 kB] 348s Get:180 http://ftpmaster.internal/ubuntu resolute/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB] 348s Get:181 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 348s Get:182 http://ftpmaster.internal/ubuntu resolute/universe amd64 pkg-r-autopkgtest all 20250812 [6158 B] 348s Get:183 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-abind all 1.4-8-1build1 [67.0 kB] 348s Get:184 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 348s Get:185 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-generics all 0.1.4-1 [84.0 kB] 348s Get:186 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 348s Get:187 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB] 348s Get:188 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 348s Get:189 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 348s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 348s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 348s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB] 348s Get:193 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 348s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fansi amd64 1.0.6-2 [626 kB] 348s Get:195 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 348s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 348s Get:197 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 348s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 348s Get:199 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 349s Get:200 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 349s Get:201 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB] 349s Get:202 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 349s Get:203 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 349s Get:204 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-e1071 amd64 1.7-17-1 [579 kB] 349s Get:205 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-kernsmooth amd64 2.23-26-1build1 [93.6 kB] 349s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-classint amd64 0.4-11+dfsg-1 [108 kB] 349s Get:207 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbi all 1.2.3-1build1 [855 kB] 349s Get:208 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.21-2 [84.4 kB] 349s Get:209 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 349s Get:210 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB] 349s Get:211 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-wk amd64 0.9.4-1 [1791 kB] 349s Get:212 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-s2 amd64 1.1.9-1build1 [1815 kB] 349s Get:213 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-units amd64 0.8-7+dfsg-2 [300 kB] 349s Get:214 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sf amd64 1.0-19+dfsg-2build2 [3298 kB] 349s Get:215 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-areal all 0.1.8+dfsg-2 [1004 kB] 349s Get:216 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 349s Get:217 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 349s Get:218 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-base64enc amd64 0.1-3-3build1 [28.5 kB] 349s Get:219 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bdsmatrix amd64 1.3-7-1 [299 kB] 349s Get:220 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 349s Get:221 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 349s Get:222 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 349s Get:223 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB] 349s Get:224 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 349s Get:225 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB] 349s Get:226 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 349s Get:227 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-memoise all 2.0.1-1build1 [54.5 kB] 349s Get:228 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 349s Get:229 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 349s Get:230 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rappdirs amd64 0.3.3-1build1 [49.3 kB] 350s Get:231 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 350s Get:232 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB] 350s Get:233 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cairo amd64 1.6-2-1 [88.8 kB] 350s Get:234 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB] 350s Get:235 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 350s Get:236 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 350s Get:237 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cftime all 1.7.2-1 [918 kB] 350s Get:238 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cluster amd64 2.1.8.1-1 [579 kB] 350s Get:239 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-clue amd64 0.3-66-1 [968 kB] 350s Get:240 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-codetools all 0.2-20-1build1 [91.1 kB] 350s Get:241 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-collapse amd64 2.1.0-1 [3485 kB] 350s Get:242 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB] 350s Get:243 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lazyeval amd64 0.2.2-1build2 [146 kB] 350s Get:244 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rex all 1.2.1-1build1 [126 kB] 350s Get:245 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-curl amd64 7.0.0+dfsg-1 [202 kB] 350s Get:246 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 350s Get:247 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 350s Get:248 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 350s Get:249 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 350s Get:250 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB] 350s Get:251 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cpp11 all 0.5.3-1 [242 kB] 350s Get:252 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 350s Get:253 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 350s Get:254 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-diffobj amd64 0.3.5-1build1 [1156 kB] 351s Get:255 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 351s Get:256 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 351s Get:257 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB] 351s Get:258 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 351s Get:259 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 351s Get:260 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-globals all 0.18.0-1 [158 kB] 351s Get:261 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-listenv all 0.10.0+dfsg-1 [113 kB] 351s Get:262 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-parallelly amd64 1.42.0-1 [540 kB] 351s Get:263 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 351s Get:264 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-future.apply all 1.11.3+dfsg-1 [175 kB] 351s Get:265 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 351s Get:266 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 351s Get:267 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lattice amd64 0.22-7-1 [1367 kB] 351s Get:268 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-nlme amd64 3.1.168-1 [2320 kB] 352s Get:269 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrix amd64 1.7-4-1 [4220 kB] 352s Get:270 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mgcv amd64 1.9-4-1 [3556 kB] 352s Get:271 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 352s Get:272 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 352s Get:273 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 352s Get:274 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB] 352s Get:275 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 353s Get:276 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tweenr amd64 2.0.3-1 [410 kB] 353s Get:277 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB] 353s Get:278 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-systemfonts amd64 1.2.1-1 [347 kB] 353s Get:279 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 353s Get:280 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggforce amd64 0.4.2-1 [1777 kB] 353s Get:281 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringi amd64 1.8.4-1build2 [908 kB] 353s Get:282 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 353s Get:283 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggthemes all 5.2.0-1 [760 kB] 353s Get:284 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-goftest amd64 1.2-3-1build1 [60.5 kB] 353s Get:285 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gridextra all 2.3-3build2 [1032 kB] 354s Get:286 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB] 354s Get:287 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 354s Get:288 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 354s Get:289 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 354s Get:290 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 354s Get:291 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-intervals amd64 0.15.5-1 [602 kB] 354s Get:292 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 354s Get:293 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 354s Get:294 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-zoo amd64 1.8-15-1 [1025 kB] 354s Get:295 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lmtest amd64 0.9.40-1build1 [400 kB] 354s Get:296 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lwgeom amd64 0.2-14-1 [463 kB] 355s Get:297 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-maps amd64 3.4.2.1-1 [2352 kB] 355s Get:298 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mapdata amd64 2.3.1-1 [23.5 MB] 357s Get:299 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-misctools all 0.6-28-1 [99.9 kB] 357s Get:300 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sandwich all 3.1-1-1 [1483 kB] 357s Get:301 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-maxlik all 1.5-2.2-1 [1115 kB] 357s Get:302 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rnetcdf amd64 2.9-2-1 [254 kB] 357s Get:303 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 357s Get:304 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ncmeta all 0.4.0-1 [362 kB] 357s Get:305 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stars all 0.6-8-1 [4414 kB] 357s Get:306 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ncdfgeom all 1.1.6+dfsg-1 [4124 kB] 357s Get:307 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 357s Get:308 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pcict amd64 0.5-4.4-1 [94.4 kB] 357s Get:309 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgbuild all 1.4.8-1 [219 kB] 357s Get:310 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rprojroot all 2.1.1-1 [131 kB] 357s Get:311 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgload all 1.4.1-1 [252 kB] 357s Get:312 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rbibutils amd64 2.3-1 [1023 kB] 357s Get:313 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rdpack all 2.6.3-1 [636 kB] 357s Get:314 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plm all 2.6-7-1 [1823 kB] 357s Get:315 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-praise all 1.0.0-4build2 [20.9 kB] 357s Get:316 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-randomforest amd64 4.7-1.2-1 [216 kB] 357s Get:317 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sp amd64 1:2.2-0+dfsg-1 [1444 kB] 358s Get:318 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-terra amd64 1.8-70-1build2 [4344 kB] 358s Get:319 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-raster amd64 3.6-32-1 [3186 kB] 358s Get:320 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tinytex all 0.58-1 [148 kB] 358s Get:321 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-modernizr all 3.13.0-0.1build1 [100 kB] 358s Get:322 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xtable all 1:1.8-4-2build1 [691 kB] 358s Get:323 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 358s Get:324 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 358s Get:325 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 358s Get:326 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 358s Get:327 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 359s Get:328 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 359s Get:329 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xts amd64 0.14.1-1 [1198 kB] 359s Get:330 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spacetime all 1.3-3-2 [2780 kB] 359s Get:331 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.utils amd64 3.1-3-1 [387 kB] 359s Get:332 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.data all 3.1-6-1 [4153 kB] 359s Get:333 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.univar amd64 3.1-2-1 [315 kB] 359s Get:334 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.geom amd64 3.3-6-1 [3968 kB] 359s Get:335 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.random amd64 3.3-3-1 [1177 kB] 359s Get:336 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tensor all 1.5-4build1 [16.3 kB] 359s Get:337 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.sparse amd64 3.1-0-1 [221 kB] 360s Get:338 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.explore amd64 3.3-4-1 [3347 kB] 360s Get:339 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.model amd64 3.3-4-1 [3397 kB] 360s Get:340 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat.linnet amd64 3.2-5-1 [1509 kB] 360s Get:341 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-spatstat amd64 3.3-1-1 [4121 kB] 360s Get:342 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-waldo all 0.6.2-1 [153 kB] 360s Get:343 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 360s Get:344 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 361s Preconfiguring packages ... 361s Fetched 401 MB in 22s (18.4 MB/s) 361s Selecting previously unselected package libisl23:amd64. 361s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124211 files and directories currently installed.) 361s Preparing to unpack .../000-libisl23_0.27-1build1_amd64.deb ... 361s Unpacking libisl23:amd64 (0.27-1build1) ... 361s Selecting previously unselected package libmpc3:amd64. 361s Preparing to unpack .../001-libmpc3_1.3.1-2_amd64.deb ... 361s Unpacking libmpc3:amd64 (1.3.1-2) ... 361s Selecting previously unselected package cpp-15-x86-64-linux-gnu. 361s Preparing to unpack .../002-cpp-15-x86-64-linux-gnu_15.2.0-11ubuntu1_amd64.deb ... 361s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-11ubuntu1) ... 361s Selecting previously unselected package cpp-15. 361s Preparing to unpack .../003-cpp-15_15.2.0-11ubuntu1_amd64.deb ... 361s Unpacking cpp-15 (15.2.0-11ubuntu1) ... 361s Selecting previously unselected package cpp-x86-64-linux-gnu. 361s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 361s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 361s Selecting previously unselected package cpp. 361s Preparing to unpack .../005-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ... 361s Unpacking cpp (4:15.2.0-4ubuntu1) ... 361s Selecting previously unselected package libcc1-0:amd64. 361s Preparing to unpack .../006-libcc1-0_15.2.0-11ubuntu1_amd64.deb ... 361s Unpacking libcc1-0:amd64 (15.2.0-11ubuntu1) ... 361s Selecting previously unselected package libgomp1:amd64. 361s Preparing to unpack .../007-libgomp1_15.2.0-11ubuntu1_amd64.deb ... 361s Unpacking libgomp1:amd64 (15.2.0-11ubuntu1) ... 361s Selecting previously unselected package libitm1:amd64. 361s Preparing to unpack .../008-libitm1_15.2.0-11ubuntu1_amd64.deb ... 361s Unpacking libitm1:amd64 (15.2.0-11ubuntu1) ... 361s Selecting previously unselected package libasan8:amd64. 361s Preparing to unpack .../009-libasan8_15.2.0-11ubuntu1_amd64.deb ... 361s Unpacking libasan8:amd64 (15.2.0-11ubuntu1) ... 361s Selecting previously unselected package liblsan0:amd64. 361s Preparing to unpack .../010-liblsan0_15.2.0-11ubuntu1_amd64.deb ... 361s Unpacking liblsan0:amd64 (15.2.0-11ubuntu1) ... 361s Selecting previously unselected package libtsan2:amd64. 361s Preparing to unpack .../011-libtsan2_15.2.0-11ubuntu1_amd64.deb ... 361s Unpacking libtsan2:amd64 (15.2.0-11ubuntu1) ... 361s Selecting previously unselected package libubsan1:amd64. 361s Preparing to unpack .../012-libubsan1_15.2.0-11ubuntu1_amd64.deb ... 361s Unpacking libubsan1:amd64 (15.2.0-11ubuntu1) ... 361s Selecting previously unselected package libhwasan0:amd64. 361s Preparing to unpack .../013-libhwasan0_15.2.0-11ubuntu1_amd64.deb ... 361s Unpacking libhwasan0:amd64 (15.2.0-11ubuntu1) ... 361s Selecting previously unselected package libquadmath0:amd64. 361s Preparing to unpack .../014-libquadmath0_15.2.0-11ubuntu1_amd64.deb ... 361s Unpacking libquadmath0:amd64 (15.2.0-11ubuntu1) ... 361s Selecting previously unselected package libgcc-15-dev:amd64. 361s Preparing to unpack .../015-libgcc-15-dev_15.2.0-11ubuntu1_amd64.deb ... 361s Unpacking libgcc-15-dev:amd64 (15.2.0-11ubuntu1) ... 361s Selecting previously unselected package gcc-15-x86-64-linux-gnu. 361s Preparing to unpack .../016-gcc-15-x86-64-linux-gnu_15.2.0-11ubuntu1_amd64.deb ... 361s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-11ubuntu1) ... 362s Selecting previously unselected package gcc-15. 362s Preparing to unpack .../017-gcc-15_15.2.0-11ubuntu1_amd64.deb ... 362s Unpacking gcc-15 (15.2.0-11ubuntu1) ... 362s Selecting previously unselected package gcc-x86-64-linux-gnu. 362s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 362s Unpacking gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 362s Selecting previously unselected package gcc. 362s Preparing to unpack .../019-gcc_4%3a15.2.0-4ubuntu1_amd64.deb ... 362s Unpacking gcc (4:15.2.0-4ubuntu1) ... 362s Selecting previously unselected package libstdc++-15-dev:amd64. 362s Preparing to unpack .../020-libstdc++-15-dev_15.2.0-11ubuntu1_amd64.deb ... 362s Unpacking libstdc++-15-dev:amd64 (15.2.0-11ubuntu1) ... 362s Selecting previously unselected package g++-15-x86-64-linux-gnu. 362s Preparing to unpack .../021-g++-15-x86-64-linux-gnu_15.2.0-11ubuntu1_amd64.deb ... 362s Unpacking g++-15-x86-64-linux-gnu (15.2.0-11ubuntu1) ... 362s Selecting previously unselected package g++-15. 362s Preparing to unpack .../022-g++-15_15.2.0-11ubuntu1_amd64.deb ... 362s Unpacking g++-15 (15.2.0-11ubuntu1) ... 362s Selecting previously unselected package g++-x86-64-linux-gnu. 362s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 362s Unpacking g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 362s Selecting previously unselected package g++. 362s Preparing to unpack .../024-g++_4%3a15.2.0-4ubuntu1_amd64.deb ... 362s Unpacking g++ (4:15.2.0-4ubuntu1) ... 362s Selecting previously unselected package build-essential. 362s Preparing to unpack .../025-build-essential_12.12ubuntu2_amd64.deb ... 362s Unpacking build-essential (12.12ubuntu2) ... 362s Selecting previously unselected package dctrl-tools. 362s Preparing to unpack .../026-dctrl-tools_2.24-3build4_amd64.deb ... 362s Unpacking dctrl-tools (2.24-3build4) ... 362s Selecting previously unselected package fonts-dejavu-mono. 362s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8build1_all.deb ... 362s Unpacking fonts-dejavu-mono (2.37-8build1) ... 362s Selecting previously unselected package fonts-dejavu-core. 362s Preparing to unpack .../028-fonts-dejavu-core_2.37-8build1_all.deb ... 362s Unpacking fonts-dejavu-core (2.37-8build1) ... 362s Selecting previously unselected package fontconfig-config. 362s Preparing to unpack .../029-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ... 362s Unpacking fontconfig-config (2.17.1-3ubuntu1) ... 362s Selecting previously unselected package libfontconfig1:amd64. 362s Preparing to unpack .../030-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ... 362s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ... 362s Selecting previously unselected package fontconfig. 362s Preparing to unpack .../031-fontconfig_2.17.1-3ubuntu1_amd64.deb ... 362s Unpacking fontconfig (2.17.1-3ubuntu1) ... 362s Selecting previously unselected package fonts-font-awesome. 362s Preparing to unpack .../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ... 362s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 362s Selecting previously unselected package fonts-glyphicons-halflings. 362s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ... 362s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ... 362s Selecting previously unselected package fonts-mathjax. 362s Preparing to unpack .../034-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ... 362s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ... 362s Selecting previously unselected package gdal-data. 362s Preparing to unpack .../035-gdal-data_3.12.1+dfsg-1_all.deb ... 362s Unpacking gdal-data (3.12.1+dfsg-1) ... 362s Selecting previously unselected package gdal-plugins:amd64. 362s Preparing to unpack .../036-gdal-plugins_3.12.1+dfsg-1_amd64.deb ... 362s Unpacking gdal-plugins:amd64 (3.12.1+dfsg-1) ... 362s Selecting previously unselected package libgfortran5:amd64. 362s Preparing to unpack .../037-libgfortran5_15.2.0-11ubuntu1_amd64.deb ... 362s Unpacking libgfortran5:amd64 (15.2.0-11ubuntu1) ... 362s Selecting previously unselected package libgfortran-15-dev:amd64. 362s Preparing to unpack .../038-libgfortran-15-dev_15.2.0-11ubuntu1_amd64.deb ... 362s Unpacking libgfortran-15-dev:amd64 (15.2.0-11ubuntu1) ... 362s Selecting previously unselected package gfortran-15-x86-64-linux-gnu. 362s Preparing to unpack .../039-gfortran-15-x86-64-linux-gnu_15.2.0-11ubuntu1_amd64.deb ... 362s Unpacking gfortran-15-x86-64-linux-gnu (15.2.0-11ubuntu1) ... 362s Selecting previously unselected package gfortran-15. 362s Preparing to unpack .../040-gfortran-15_15.2.0-11ubuntu1_amd64.deb ... 363s Unpacking gfortran-15 (15.2.0-11ubuntu1) ... 363s Selecting previously unselected package gfortran-x86-64-linux-gnu. 363s Preparing to unpack .../041-gfortran-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 363s Unpacking gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 363s Selecting previously unselected package gfortran. 363s Preparing to unpack .../042-gfortran_4%3a15.2.0-4ubuntu1_amd64.deb ... 363s Unpacking gfortran (4:15.2.0-4ubuntu1) ... 363s Selecting previously unselected package icu-devtools. 363s Preparing to unpack .../043-icu-devtools_78.2-1ubuntu1_amd64.deb ... 363s Unpacking icu-devtools (78.2-1ubuntu1) ... 363s Selecting previously unselected package javascript-common. 363s Preparing to unpack .../044-javascript-common_12+nmu1_all.deb ... 363s Unpacking javascript-common (12+nmu1) ... 363s Selecting previously unselected package libabsl20260107:amd64. 363s Preparing to unpack .../045-libabsl20260107_20260107.0-0ubuntu2_amd64.deb ... 363s Unpacking libabsl20260107:amd64 (20260107.0-0ubuntu2) ... 363s Selecting previously unselected package libaec0:amd64. 363s Preparing to unpack .../046-libaec0_1.1.5-1_amd64.deb ... 363s Unpacking libaec0:amd64 (1.1.5-1) ... 363s Selecting previously unselected package libaom3:amd64. 363s Preparing to unpack .../047-libaom3_3.13.1-2_amd64.deb ... 363s Unpacking libaom3:amd64 (3.13.1-2) ... 363s Selecting previously unselected package libblas3:amd64. 363s Preparing to unpack .../048-libblas3_3.12.1-7ubuntu1_amd64.deb ... 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previously unselected package libde265-0:amd64. 363s Preparing to unpack .../070-libde265-0_1.0.16-1build1_amd64.deb ... 363s Unpacking libde265-0:amd64 (1.0.16-1build1) ... 363s Selecting previously unselected package libdeflate0:amd64. 363s Preparing to unpack .../071-libdeflate0_1.23-2_amd64.deb ... 363s Unpacking libdeflate0:amd64 (1.23-2) ... 363s Selecting previously unselected package libdeflate-dev:amd64. 363s Preparing to unpack .../072-libdeflate-dev_1.23-2_amd64.deb ... 363s Unpacking libdeflate-dev:amd64 (1.23-2) ... 363s Selecting previously unselected package libfyba0t64:amd64. 363s Preparing to unpack .../073-libfyba0t64_4.1.1-11build2_amd64.deb ... 363s Unpacking libfyba0t64:amd64 (4.1.1-11build2) ... 363s Selecting previously unselected package libminizip1t64:amd64. 363s Preparing to unpack .../074-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ... 363s Unpacking libminizip1t64:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 363s Selecting previously unselected package libfreexl1:amd64. 363s Preparing to unpack .../075-libfreexl1_2.0.0-1build3_amd64.deb ... 363s Unpacking libfreexl1:amd64 (2.0.0-1build3) ... 363s Selecting previously unselected package libgeos3.14.1:amd64. 363s Preparing to unpack .../076-libgeos3.14.1_3.14.1-2_amd64.deb ... 363s Unpacking libgeos3.14.1:amd64 (3.14.1-2) ... 363s Selecting previously unselected package libgeos-c1t64:amd64. 363s Preparing to unpack .../077-libgeos-c1t64_3.14.1-2_amd64.deb ... 363s Unpacking libgeos-c1t64:amd64 (3.14.1-2) ... 363s Selecting previously unselected package proj-data. 363s Preparing to unpack .../078-proj-data_9.7.1-1_all.deb ... 363s Unpacking proj-data (9.7.1-1) ... 363s Selecting previously unselected package libjbig0:amd64. 363s Preparing to unpack .../079-libjbig0_2.1-6.1ubuntu3_amd64.deb ... 363s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ... 363s Selecting previously unselected package liblerc4:amd64. 363s Preparing to unpack .../080-liblerc4_4.0.0+ds-5ubuntu2_amd64.deb ... 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(0.9.8+dfsg-2) ... 363s Selecting previously unselected package libkmlbase1t64:amd64. 363s Preparing to unpack .../097-libkmlbase1t64_1.3.0-13_amd64.deb ... 363s Unpacking libkmlbase1t64:amd64 (1.3.0-13) ... 363s Selecting previously unselected package libkmldom1t64:amd64. 363s Preparing to unpack .../098-libkmldom1t64_1.3.0-13_amd64.deb ... 363s Unpacking libkmldom1t64:amd64 (1.3.0-13) ... 363s Selecting previously unselected package libkmlengine1t64:amd64. 363s Preparing to unpack .../099-libkmlengine1t64_1.3.0-13_amd64.deb ... 363s Unpacking libkmlengine1t64:amd64 (1.3.0-13) ... 363s Selecting previously unselected package libmuparser2v5:amd64. 363s Preparing to unpack .../100-libmuparser2v5_2.3.4-2_amd64.deb ... 363s Unpacking libmuparser2v5:amd64 (2.3.4-2) ... 363s Selecting previously unselected package mysql-common. 363s Preparing to unpack .../101-mysql-common_5.8+1.1.1ubuntu2_all.deb ... 363s Unpacking mysql-common (5.8+1.1.1ubuntu2) ... 363s Selecting previously unselected package libmysqlclient24:amd64. 363s Preparing to unpack .../102-libmysqlclient24_8.4.8-0ubuntu1_amd64.deb ... 363s Unpacking libmysqlclient24:amd64 (8.4.8-0ubuntu1) ... 364s Selecting previously unselected package libhdf5-hl-310:amd64. 364s Preparing to unpack .../103-libhdf5-hl-310_1.14.6+repack-2_amd64.deb ... 364s Unpacking libhdf5-hl-310:amd64 (1.14.6+repack-2) ... 364s Selecting previously unselected package libnetcdf22:amd64. 364s Preparing to unpack .../104-libnetcdf22_1%3a4.9.3-1build1_amd64.deb ... 364s Unpacking libnetcdf22:amd64 (1:4.9.3-1build1) ... 364s Selecting previously unselected package libltdl7:amd64. 364s Preparing to unpack .../105-libltdl7_2.5.4-9_amd64.deb ... 364s Unpacking libltdl7:amd64 (2.5.4-9) ... 364s Selecting previously unselected package libodbc2:amd64. 364s Preparing to unpack .../106-libodbc2_2.3.14-1_amd64.deb ... 364s Unpacking libodbc2:amd64 (2.3.14-1) ... 364s Selecting previously unselected package unixodbc-common. 364s Preparing to unpack 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libjpeg-turbo8-dev:amd64. 364s Preparing to unpack .../123-libjpeg-turbo8-dev_2.1.5-4ubuntu2_amd64.deb ... 364s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-4ubuntu2) ... 364s Selecting previously unselected package libjpeg8-dev:amd64. 364s Preparing to unpack .../124-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 364s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 364s Selecting previously unselected package libjpeg-dev:amd64. 364s Preparing to unpack .../125-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 364s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 364s Selecting previously unselected package libjs-bootstrap. 364s Preparing to unpack .../126-libjs-bootstrap_3.4.1+dfsg-6_all.deb ... 364s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ... 364s Selecting previously unselected package libjs-popper.js. 364s Preparing to unpack .../127-libjs-popper.js_1.16.1+ds-6build1_all.deb ... 364s Unpacking libjs-popper.js (1.16.1+ds-6build1) ... 364s Selecting previously unselected package libjs-bootstrap4. 364s 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libpaper2:amd64 (2.2.5-0.3build1) ... 365s Selecting previously unselected package libpaper-utils. 365s Preparing to unpack .../149-libpaper-utils_2.2.5-0.3build1_amd64.deb ... 365s Unpacking libpaper-utils (2.2.5-0.3build1) ... 365s Selecting previously unselected package libpcre2-16-0:amd64. 365s Preparing to unpack .../150-libpcre2-16-0_10.46-1_amd64.deb ... 365s Unpacking libpcre2-16-0:amd64 (10.46-1) ... 365s Selecting previously unselected package libpcre2-32-0:amd64. 365s Preparing to unpack .../151-libpcre2-32-0_10.46-1_amd64.deb ... 365s Unpacking libpcre2-32-0:amd64 (10.46-1) ... 365s Selecting previously unselected package libpcre2-posix3:amd64. 365s Preparing to unpack .../152-libpcre2-posix3_10.46-1_amd64.deb ... 365s Unpacking libpcre2-posix3:amd64 (10.46-1) ... 365s Selecting previously unselected package libpcre2-dev:amd64. 365s Preparing to unpack .../153-libpcre2-dev_10.46-1_amd64.deb ... 365s Unpacking libpcre2-dev:amd64 (10.46-1) ... 365s Selecting previously unselected package libpkgconf3:amd64. 365s Preparing to unpack .../154-libpkgconf3_1.8.1-4build1_amd64.deb ... 365s Unpacking libpkgconf3:amd64 (1.8.1-4build1) ... 365s Selecting previously unselected package zlib1g-dev:amd64. 365s Preparing to unpack .../155-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ... 365s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 365s Selecting previously unselected package libpng-dev:amd64. 365s Preparing to unpack .../156-libpng-dev_1.6.54-1_amd64.deb ... 365s Unpacking libpng-dev:amd64 (1.6.54-1) ... 365s Selecting previously unselected package libreadline-dev:amd64. 365s Preparing to unpack .../157-libreadline-dev_8.3-3_amd64.deb ... 365s Unpacking libreadline-dev:amd64 (8.3-3) ... 365s Selecting previously unselected package libsm6:amd64. 365s Preparing to unpack .../158-libsm6_2%3a1.2.6-1_amd64.deb ... 365s Unpacking libsm6:amd64 (2:1.2.6-1) ... 365s Selecting previously unselected package libtcl8.6:amd64. 365s Preparing to unpack .../159-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... 365s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... 365s Selecting previously unselected package libxft2:amd64. 365s Preparing to unpack .../160-libxft2_2.3.6-1build2_amd64.deb ... 365s Unpacking libxft2:amd64 (2.3.6-1build2) ... 365s Selecting previously unselected package libxss1:amd64. 365s Preparing to unpack .../161-libxss1_1%3a1.2.3-1build4_amd64.deb ... 365s Unpacking libxss1:amd64 (1:1.2.3-1build4) ... 365s Selecting previously unselected package libtk8.6:amd64. 365s Preparing to unpack .../162-libtk8.6_8.6.17-1_amd64.deb ... 365s Unpacking libtk8.6:amd64 (8.6.17-1) ... 365s Selecting previously unselected package libudunits2-data. 365s Preparing to unpack .../163-libudunits2-data_2.2.28-8_all.deb ... 365s Unpacking libudunits2-data (2.2.28-8) ... 365s Selecting previously unselected package libudunits2-0:amd64. 365s Preparing to unpack .../164-libudunits2-0_2.2.28-8_amd64.deb ... 365s Unpacking libudunits2-0:amd64 (2.2.28-8) 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Preparing to unpack .../170-pandoc-data_3.1.11.1-3build1_all.deb ... 365s Unpacking pandoc-data (3.1.11.1-3build1) ... 365s Selecting previously unselected package pandoc. 365s Preparing to unpack .../171-pandoc_3.1.11.1+ds-4_amd64.deb ... 365s Unpacking pandoc (3.1.11.1+ds-4) ... 365s Selecting previously unselected package zip. 365s Preparing to unpack .../172-zip_3.0-15ubuntu2_amd64.deb ... 365s Unpacking zip (3.0-15ubuntu2) ... 366s Selecting previously unselected package unzip. 366s Preparing to unpack .../173-unzip_6.0-29ubuntu1_amd64.deb ... 366s Unpacking unzip (6.0-29ubuntu1) ... 366s Selecting previously unselected package xdg-utils. 366s Preparing to unpack .../174-xdg-utils_1.2.1-2ubuntu2_all.deb ... 366s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 366s Selecting previously unselected package r-base-core. 366s Preparing to unpack .../175-r-base-core_4.5.2-1ubuntu2_amd64.deb ... 366s Unpacking r-base-core (4.5.2-1ubuntu2) ... 366s Selecting previously unselected package liblzma-dev:amd64. 366s Preparing to unpack .../176-liblzma-dev_5.8.2-2_amd64.deb ... 366s Unpacking liblzma-dev:amd64 (5.8.2-2) ... 366s Selecting previously unselected package pkgconf-bin. 366s Preparing to unpack .../177-pkgconf-bin_1.8.1-4build1_amd64.deb ... 366s Unpacking pkgconf-bin (1.8.1-4build1) ... 366s Selecting previously unselected package pkgconf:amd64. 366s Preparing to unpack .../178-pkgconf_1.8.1-4build1_amd64.deb ... 366s Unpacking pkgconf:amd64 (1.8.1-4build1) ... 366s Selecting previously unselected package libtirpc-dev:amd64. 366s Preparing to unpack .../179-libtirpc-dev_1.3.6+ds-1_amd64.deb ... 366s Unpacking libtirpc-dev:amd64 (1.3.6+ds-1) ... 366s Selecting previously unselected package r-base-dev. 366s Preparing to unpack .../180-r-base-dev_4.5.2-1ubuntu2_all.deb ... 366s Unpacking r-base-dev (4.5.2-1ubuntu2) ... 366s Selecting previously unselected package pkg-r-autopkgtest. 366s Preparing to unpack .../181-pkg-r-autopkgtest_20250812_all.deb ... 366s Unpacking pkg-r-autopkgtest (20250812) ... 366s Selecting previously unselected package r-cran-abind. 366s Preparing to unpack .../182-r-cran-abind_1.4-8-1build1_all.deb ... 366s Unpacking r-cran-abind (1.4-8-1build1) ... 366s Selecting previously unselected package r-cran-cli. 366s Preparing to unpack .../183-r-cran-cli_3.6.4-1_amd64.deb ... 366s Unpacking r-cran-cli (3.6.4-1) ... 366s Selecting previously unselected package r-cran-generics. 366s Preparing to unpack .../184-r-cran-generics_0.1.4-1_all.deb ... 366s Unpacking r-cran-generics (0.1.4-1) ... 366s Selecting previously unselected package r-cran-glue. 366s Preparing to unpack .../185-r-cran-glue_1.8.0-1_amd64.deb ... 366s Unpacking r-cran-glue (1.8.0-1) ... 366s Selecting previously unselected package r-cran-rlang. 366s Preparing to unpack .../186-r-cran-rlang_1.1.5-3_amd64.deb ... 366s Unpacking r-cran-rlang (1.1.5-3) ... 366s Selecting previously unselected package r-cran-lifecycle. 366s Preparing to unpack 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r-cran-fansi. 366s Preparing to unpack .../193-r-cran-fansi_1.0.6-2_amd64.deb ... 366s Unpacking r-cran-fansi (1.0.6-2) ... 366s Selecting previously unselected package r-cran-pkgconfig. 366s Preparing to unpack .../194-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 366s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 366s Selecting previously unselected package r-cran-tibble. 366s Preparing to unpack .../195-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 366s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 366s Selecting previously unselected package r-cran-withr. 366s Preparing to unpack .../196-r-cran-withr_3.0.2+dfsg-1_all.deb ... 366s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 366s Selecting previously unselected package r-cran-tidyselect. 366s Preparing to unpack .../197-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 366s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 366s Selecting previously unselected package r-cran-dplyr. 366s Preparing to unpack .../198-r-cran-dplyr_1.1.4-4_amd64.deb ... 366s Unpacking r-cran-dplyr (1.1.4-4) ... 366s Selecting previously unselected package r-cran-purrr. 366s Preparing to unpack .../199-r-cran-purrr_1.0.4-1_amd64.deb ... 366s Unpacking r-cran-purrr (1.0.4-1) ... 366s Selecting previously unselected package r-cran-mass. 366s Preparing to unpack .../200-r-cran-mass_7.3-65-1_amd64.deb ... 366s Unpacking r-cran-mass (7.3-65-1) ... 366s Selecting previously unselected package r-cran-class. 366s Preparing to unpack .../201-r-cran-class_7.3-23-1_amd64.deb ... 366s Unpacking r-cran-class (7.3-23-1) ... 366s Selecting previously unselected package r-cran-proxy. 366s Preparing to unpack .../202-r-cran-proxy_0.4-27-1_amd64.deb ... 366s Unpacking r-cran-proxy (0.4-27-1) ... 366s Selecting previously unselected package r-cran-e1071. 366s Preparing to unpack .../203-r-cran-e1071_1.7-17-1_amd64.deb ... 366s Unpacking r-cran-e1071 (1.7-17-1) ... 366s Selecting previously unselected package r-cran-kernsmooth. 366s Preparing to unpack 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Selecting previously unselected package r-cran-wk. 366s Preparing to unpack .../210-r-cran-wk_0.9.4-1_amd64.deb ... 366s Unpacking r-cran-wk (0.9.4-1) ... 366s Selecting previously unselected package r-cran-s2. 366s Preparing to unpack .../211-r-cran-s2_1.1.9-1build1_amd64.deb ... 366s Unpacking r-cran-s2 (1.1.9-1build1) ... 366s Selecting previously unselected package r-cran-units. 366s Preparing to unpack .../212-r-cran-units_0.8-7+dfsg-2_amd64.deb ... 366s Unpacking r-cran-units (0.8-7+dfsg-2) ... 366s Selecting previously unselected package r-cran-sf. 366s Preparing to unpack .../213-r-cran-sf_1.0-19+dfsg-2build2_amd64.deb ... 366s Unpacking r-cran-sf (1.0-19+dfsg-2build2) ... 366s Selecting previously unselected package r-cran-areal. 366s Preparing to unpack .../214-r-cran-areal_0.1.8+dfsg-2_all.deb ... 366s Unpacking r-cran-areal (0.1.8+dfsg-2) ... 366s Selecting previously unselected package r-cran-sys. 366s Preparing to unpack .../215-r-cran-sys_3.4.3-1_amd64.deb ... 366s Unpacking r-cran-sys (3.4.3-1) ... 366s Selecting previously unselected package r-cran-askpass. 367s Preparing to unpack .../216-r-cran-askpass_1.2.1-1_amd64.deb ... 367s Unpacking r-cran-askpass (1.2.1-1) ... 367s Selecting previously unselected package r-cran-base64enc. 367s Preparing to unpack .../217-r-cran-base64enc_0.1-3-3build1_amd64.deb ... 367s Unpacking r-cran-base64enc (0.1-3-3build1) ... 367s Selecting previously unselected package r-cran-bdsmatrix. 367s Preparing to unpack .../218-r-cran-bdsmatrix_1.3-7-1_amd64.deb ... 367s Unpacking r-cran-bdsmatrix (1.3-7-1) ... 367s Selecting previously unselected package r-cran-brio. 367s Preparing to unpack .../219-r-cran-brio_1.1.5-1_amd64.deb ... 367s Unpacking r-cran-brio (1.1.5-1) ... 367s Selecting previously unselected package r-cran-fastmap. 367s Preparing to unpack .../220-r-cran-fastmap_1.2.0-1_amd64.deb ... 367s Unpacking r-cran-fastmap (1.2.0-1) ... 367s Selecting previously unselected package r-cran-cachem. 367s Preparing to unpack .../221-r-cran-cachem_1.1.0-1_amd64.deb ... 367s Unpacking r-cran-cachem (1.1.0-1) ... 367s Selecting previously unselected package r-cran-digest. 367s Preparing to unpack .../222-r-cran-digest_0.6.39-1_amd64.deb ... 367s Unpacking r-cran-digest (0.6.39-1) ... 367s Selecting previously unselected package r-cran-htmltools. 367s Preparing to unpack .../223-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 367s Unpacking r-cran-htmltools (0.5.8.1-1) ... 367s Selecting previously unselected package r-cran-jquerylib. 367s Preparing to unpack .../224-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ... 367s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ... 367s Selecting previously unselected package r-cran-jsonlite. 367s Preparing to unpack .../225-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 367s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 367s Selecting previously unselected package r-cran-memoise. 367s Preparing to unpack .../226-r-cran-memoise_2.0.1-1build1_all.deb ... 367s Unpacking r-cran-memoise (2.0.1-1build1) ... 367s Selecting previously unselected package r-cran-mime. 367s Preparing to unpack .../227-r-cran-mime_0.12-2_amd64.deb ... 367s Unpacking r-cran-mime (0.12-2) ... 367s Selecting previously unselected package r-cran-fs. 367s Preparing to unpack .../228-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 367s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 367s Selecting previously unselected package r-cran-rappdirs. 367s Preparing to unpack .../229-r-cran-rappdirs_0.3.3-1build1_amd64.deb ... 367s Unpacking r-cran-rappdirs (0.3.3-1build1) ... 367s Selecting previously unselected package r-cran-sass. 367s Preparing to unpack .../230-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 367s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 367s Selecting previously unselected package r-cran-bslib. 367s Preparing to unpack .../231-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ... 367s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ... 367s Selecting previously unselected package r-cran-cairo. 367s Preparing to unpack .../232-r-cran-cairo_1.6-2-1_amd64.deb ... 367s Unpacking r-cran-cairo (1.6-2-1) ... 367s Selecting previously unselected package r-cran-ps. 367s Preparing to unpack .../233-r-cran-ps_1.9.0-1_amd64.deb ... 367s Unpacking r-cran-ps (1.9.0-1) ... 367s Selecting previously unselected package r-cran-processx. 367s Preparing to unpack .../234-r-cran-processx_3.8.6-1_amd64.deb ... 367s Unpacking r-cran-processx (3.8.6-1) ... 367s Selecting previously unselected package r-cran-callr. 367s Preparing to unpack .../235-r-cran-callr_3.7.6-1_all.deb ... 367s Unpacking r-cran-callr (3.7.6-1) ... 367s Selecting previously unselected package r-cran-cftime. 367s Preparing to unpack .../236-r-cran-cftime_1.7.2-1_all.deb ... 367s Unpacking r-cran-cftime (1.7.2-1) ... 367s Selecting previously unselected package r-cran-cluster. 367s Preparing to unpack .../237-r-cran-cluster_2.1.8.1-1_amd64.deb ... 367s Unpacking r-cran-cluster (2.1.8.1-1) ... 367s Selecting previously unselected package r-cran-clue. 367s Preparing to unpack .../238-r-cran-clue_0.3-66-1_amd64.deb ... 367s Unpacking r-cran-clue (0.3-66-1) ... 367s Selecting previously unselected package r-cran-codetools. 367s Preparing to unpack .../239-r-cran-codetools_0.2-20-1build1_all.deb ... 367s Unpacking r-cran-codetools (0.2-20-1build1) ... 367s Selecting previously unselected package r-cran-collapse. 367s Preparing to unpack .../240-r-cran-collapse_2.1.0-1_amd64.deb ... 367s Unpacking r-cran-collapse (2.1.0-1) ... 367s Selecting previously unselected package r-cran-commonmark. 367s Preparing to unpack .../241-r-cran-commonmark_1.9.5-1_amd64.deb ... 367s Unpacking r-cran-commonmark (1.9.5-1) ... 367s Selecting previously unselected package r-cran-lazyeval. 367s Preparing to unpack .../242-r-cran-lazyeval_0.2.2-1build2_amd64.deb ... 367s Unpacking r-cran-lazyeval (0.2.2-1build2) ... 367s Selecting previously unselected package r-cran-rex. 367s Preparing to unpack .../243-r-cran-rex_1.2.1-1build1_all.deb ... 367s Unpacking r-cran-rex (1.2.1-1build1) ... 367s Selecting previously unselected package r-cran-curl. 367s Preparing to unpack .../244-r-cran-curl_7.0.0+dfsg-1_amd64.deb ... 367s Unpacking r-cran-curl (7.0.0+dfsg-1) ... 367s Selecting previously unselected package r-cran-openssl. 367s Preparing to unpack .../245-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 367s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 367s Selecting previously unselected package r-cran-httr. 367s Preparing to unpack .../246-r-cran-httr_1.4.7+dfsg-1_all.deb ... 367s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 367s Selecting previously unselected package r-cran-crayon. 367s Preparing to unpack .../247-r-cran-crayon_1.5.3-1_all.deb ... 367s Unpacking r-cran-crayon (1.5.3-1) ... 367s Selecting previously unselected package r-cran-yaml. 367s Preparing to unpack .../248-r-cran-yaml_2.3.10-1_amd64.deb ... 367s Unpacking r-cran-yaml (2.3.10-1) ... 367s Selecting previously unselected package r-cran-covr. 367s Preparing to unpack .../249-r-cran-covr_3.6.4+dfsg-1_amd64.deb ... 367s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 367s Selecting previously unselected package r-cran-cpp11. 367s Preparing to unpack .../250-r-cran-cpp11_0.5.3-1_all.deb ... 367s Unpacking r-cran-cpp11 (0.5.3-1) ... 367s Selecting previously unselected package r-cran-deldir. 367s Preparing to unpack .../251-r-cran-deldir_2.0-4-1build1_amd64.deb ... 367s Unpacking r-cran-deldir (2.0-4-1build1) ... 367s Selecting previously unselected package r-cran-desc. 367s Preparing to unpack .../252-r-cran-desc_1.4.3-1_all.deb ... 367s Unpacking r-cran-desc (1.4.3-1) ... 367s Selecting previously unselected package r-cran-diffobj. 367s Preparing to unpack .../253-r-cran-diffobj_0.3.5-1build1_amd64.deb ... 367s Unpacking r-cran-diffobj (0.3.5-1build1) ... 367s Selecting previously unselected package r-cran-evaluate. 367s Preparing to unpack .../254-r-cran-evaluate_1.0.3-1_all.deb ... 367s Unpacking r-cran-evaluate (1.0.3-1) ... 367s Selecting previously unselected package r-cran-farver. 367s Preparing to unpack .../255-r-cran-farver_2.1.2-1_amd64.deb ... 367s Unpacking r-cran-farver (2.1.2-1) ... 367s Selecting previously unselected package r-cran-fnn. 367s Preparing to unpack .../256-r-cran-fnn_1.1.4.1-1_amd64.deb ... 367s Unpacking r-cran-fnn (1.1.4.1-1) ... 367s Selecting previously unselected package r-cran-fontawesome. 367s Preparing to unpack .../257-r-cran-fontawesome_0.5.3-1_all.deb ... 367s Unpacking r-cran-fontawesome (0.5.3-1) ... 367s Selecting previously unselected package r-cran-formula. 367s Preparing to unpack .../258-r-cran-formula_1.2-5-1_all.deb ... 367s Unpacking r-cran-formula (1.2-5-1) ... 367s Selecting previously unselected package r-cran-globals. 367s Preparing to unpack .../259-r-cran-globals_0.18.0-1_all.deb ... 367s Unpacking r-cran-globals (0.18.0-1) ... 367s Selecting previously unselected package r-cran-listenv. 367s Preparing to unpack .../260-r-cran-listenv_0.10.0+dfsg-1_all.deb ... 367s Unpacking r-cran-listenv (0.10.0+dfsg-1) ... 367s Selecting previously unselected package r-cran-parallelly. 367s Preparing to unpack .../261-r-cran-parallelly_1.42.0-1_amd64.deb ... 367s Unpacking r-cran-parallelly (1.42.0-1) ... 367s Selecting previously unselected package r-cran-future. 367s Preparing to unpack .../262-r-cran-future_1.34.0+dfsg-1_all.deb ... 367s Unpacking r-cran-future (1.34.0+dfsg-1) ... 367s Selecting previously unselected package r-cran-future.apply. 367s Preparing to unpack .../263-r-cran-future.apply_1.11.3+dfsg-1_all.deb ... 367s Unpacking r-cran-future.apply (1.11.3+dfsg-1) ... 367s Selecting previously unselected package r-cran-gtable. 367s Preparing to unpack .../264-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 367s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 367s Selecting previously unselected package r-cran-isoband. 367s Preparing to unpack .../265-r-cran-isoband_0.2.7-1_amd64.deb ... 367s Unpacking r-cran-isoband (0.2.7-1) ... 367s Selecting previously unselected package r-cran-lattice. 367s Preparing to unpack .../266-r-cran-lattice_0.22-7-1_amd64.deb ... 367s Unpacking r-cran-lattice (0.22-7-1) ... 367s Selecting previously unselected package r-cran-nlme. 367s Preparing to unpack .../267-r-cran-nlme_3.1.168-1_amd64.deb ... 367s Unpacking r-cran-nlme (3.1.168-1) ... 367s Selecting previously unselected package r-cran-matrix. 367s Preparing to unpack .../268-r-cran-matrix_1.7-4-1_amd64.deb ... 367s Unpacking r-cran-matrix (1.7-4-1) ... 368s Selecting previously unselected package r-cran-mgcv. 368s Preparing to unpack .../269-r-cran-mgcv_1.9-4-1_amd64.deb ... 368s Unpacking r-cran-mgcv (1.9-4-1) ... 368s Selecting previously unselected package r-cran-labeling. 368s Preparing to unpack .../270-r-cran-labeling_0.4.3-1_all.deb ... 368s Unpacking r-cran-labeling (0.4.3-1) ... 368s Selecting previously unselected package r-cran-rcolorbrewer. 368s Preparing to unpack .../271-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ... 368s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ... 368s Selecting previously unselected package r-cran-viridislite. 368s Preparing to unpack .../272-r-cran-viridislite_0.4.2-2_all.deb ... 368s Unpacking r-cran-viridislite (0.4.2-2) ... 368s Selecting previously unselected package r-cran-scales. 368s Preparing to unpack .../273-r-cran-scales_1.4.0-1_all.deb ... 368s Unpacking r-cran-scales (1.4.0-1) ... 368s Selecting previously unselected package r-cran-ggplot2. 368s Preparing to unpack .../274-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 368s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 368s Selecting previously unselected package r-cran-tweenr. 368s Preparing to unpack .../275-r-cran-tweenr_2.0.3-1_amd64.deb ... 368s Unpacking r-cran-tweenr (2.0.3-1) ... 368s Selecting previously unselected package r-cran-polyclip. 368s Preparing to unpack .../276-r-cran-polyclip_1.10-7-1_amd64.deb ... 368s Unpacking r-cran-polyclip (1.10-7-1) ... 368s Selecting previously unselected package r-cran-systemfonts. 368s Preparing to unpack .../277-r-cran-systemfonts_1.2.1-1_amd64.deb ... 368s Unpacking r-cran-systemfonts (1.2.1-1) ... 368s Selecting previously unselected package r-cran-rcppeigen. 368s Preparing to unpack .../278-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 368s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 368s Selecting previously unselected package r-cran-ggforce. 368s Preparing to unpack .../279-r-cran-ggforce_0.4.2-1_amd64.deb ... 368s Unpacking r-cran-ggforce (0.4.2-1) ... 368s Selecting previously unselected package r-cran-stringi. 368s Preparing to unpack .../280-r-cran-stringi_1.8.4-1build2_amd64.deb ... 368s Unpacking r-cran-stringi (1.8.4-1build2) ... 368s Selecting previously unselected package r-cran-stringr. 368s Preparing to unpack .../281-r-cran-stringr_1.5.1-1_all.deb ... 368s Unpacking r-cran-stringr (1.5.1-1) ... 368s Selecting previously unselected package r-cran-ggthemes. 368s Preparing to unpack .../282-r-cran-ggthemes_5.2.0-1_all.deb ... 368s Unpacking r-cran-ggthemes (5.2.0-1) ... 368s Selecting previously unselected package r-cran-goftest. 368s Preparing to unpack .../283-r-cran-goftest_1.2-3-1build1_amd64.deb ... 368s Unpacking r-cran-goftest (1.2-3-1build1) ... 368s Selecting previously unselected package r-cran-gridextra. 368s Preparing to unpack .../284-r-cran-gridextra_2.3-3build2_all.deb ... 368s Unpacking r-cran-gridextra (2.3-3build2) ... 368s Selecting previously unselected package r-cran-xfun. 368s Preparing to unpack .../285-r-cran-xfun_0.55+dfsg-1_amd64.deb ... 368s Unpacking r-cran-xfun (0.55+dfsg-1) ... 368s Selecting previously unselected package r-cran-highr. 368s Preparing to unpack .../286-r-cran-highr_0.11+dfsg-1_all.deb ... 368s Unpacking r-cran-highr (0.11+dfsg-1) ... 368s Selecting previously unselected package r-cran-later. 368s Preparing to unpack .../287-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 368s Unpacking r-cran-later (1.4.1+dfsg-1) ... 368s Selecting previously unselected package r-cran-promises. 368s Preparing to unpack .../288-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 368s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 368s Selecting previously unselected package r-cran-httpuv. 368s Preparing to unpack .../289-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 368s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 368s Selecting previously unselected package r-cran-intervals. 368s Preparing to unpack .../290-r-cran-intervals_0.15.5-1_amd64.deb ... 368s Unpacking r-cran-intervals (0.15.5-1) ... 368s Selecting previously unselected package libjs-mathjax. 368s Preparing to unpack .../291-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ... 368s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ... 368s Selecting previously unselected package r-cran-knitr. 368s Preparing to unpack .../292-r-cran-knitr_1.51+dfsg-1_all.deb ... 368s Unpacking r-cran-knitr (1.51+dfsg-1) ... 368s Selecting previously unselected package r-cran-zoo. 368s Preparing to unpack .../293-r-cran-zoo_1.8-15-1_amd64.deb ... 368s Unpacking r-cran-zoo (1.8-15-1) ... 368s Selecting previously unselected package r-cran-lmtest. 368s Preparing to unpack .../294-r-cran-lmtest_0.9.40-1build1_amd64.deb ... 368s Unpacking r-cran-lmtest (0.9.40-1build1) ... 368s Selecting previously unselected package r-cran-lwgeom. 368s Preparing to unpack .../295-r-cran-lwgeom_0.2-14-1_amd64.deb ... 368s Unpacking r-cran-lwgeom (0.2-14-1) ... 368s Selecting previously unselected package r-cran-maps. 368s Preparing to unpack .../296-r-cran-maps_3.4.2.1-1_amd64.deb ... 368s Unpacking r-cran-maps (3.4.2.1-1) ... 368s Selecting previously unselected package r-cran-mapdata. 368s Preparing to unpack .../297-r-cran-mapdata_2.3.1-1_amd64.deb ... 368s Unpacking r-cran-mapdata (2.3.1-1) ... 368s Selecting previously unselected package r-cran-misctools. 368s Preparing to unpack .../298-r-cran-misctools_0.6-28-1_all.deb ... 368s Unpacking r-cran-misctools (0.6-28-1) ... 368s Selecting previously unselected package r-cran-sandwich. 369s Preparing to unpack .../299-r-cran-sandwich_3.1-1-1_all.deb ... 369s Unpacking r-cran-sandwich (3.1-1-1) ... 369s Selecting previously unselected package r-cran-maxlik. 369s Preparing to unpack .../300-r-cran-maxlik_1.5-2.2-1_all.deb ... 369s Unpacking r-cran-maxlik (1.5-2.2-1) ... 369s Selecting previously unselected package r-cran-rnetcdf. 369s Preparing to unpack .../301-r-cran-rnetcdf_2.9-2-1_amd64.deb ... 369s Unpacking r-cran-rnetcdf (2.9-2-1) ... 369s Selecting previously unselected package r-cran-tidyr. 369s Preparing to unpack .../302-r-cran-tidyr_1.3.1-1_amd64.deb ... 369s Unpacking r-cran-tidyr (1.3.1-1) ... 369s Selecting previously unselected package r-cran-ncmeta. 369s Preparing to unpack .../303-r-cran-ncmeta_0.4.0-1_all.deb ... 369s Unpacking r-cran-ncmeta (0.4.0-1) ... 369s Selecting previously unselected package r-cran-stars. 369s Preparing to unpack .../304-r-cran-stars_0.6-8-1_all.deb ... 369s Unpacking r-cran-stars (0.6-8-1) ... 369s Selecting previously unselected package r-cran-ncdfgeom. 369s Preparing to unpack .../305-r-cran-ncdfgeom_1.1.6+dfsg-1_all.deb ... 369s Unpacking r-cran-ncdfgeom (1.1.6+dfsg-1) ... 369s Selecting previously unselected package r-cran-pbapply. 369s Preparing to unpack .../306-r-cran-pbapply_1.7-2-1_all.deb ... 369s Unpacking r-cran-pbapply (1.7-2-1) ... 369s Selecting previously unselected package r-cran-pcict. 369s Preparing to unpack .../307-r-cran-pcict_0.5-4.4-1_amd64.deb ... 369s Unpacking r-cran-pcict (0.5-4.4-1) ... 369s Selecting previously unselected package r-cran-pkgbuild. 369s Preparing to unpack .../308-r-cran-pkgbuild_1.4.8-1_all.deb ... 369s Unpacking r-cran-pkgbuild (1.4.8-1) ... 369s Selecting previously unselected package r-cran-rprojroot. 369s Preparing to unpack .../309-r-cran-rprojroot_2.1.1-1_all.deb ... 369s Unpacking r-cran-rprojroot (2.1.1-1) ... 369s Selecting previously unselected package r-cran-pkgload. 369s Preparing to unpack .../310-r-cran-pkgload_1.4.1-1_all.deb ... 369s Unpacking r-cran-pkgload (1.4.1-1) ... 369s Selecting previously unselected package r-cran-rbibutils. 369s Preparing to unpack .../311-r-cran-rbibutils_2.3-1_amd64.deb ... 369s Unpacking r-cran-rbibutils (2.3-1) ... 369s Selecting previously unselected package r-cran-rdpack. 369s Preparing to unpack .../312-r-cran-rdpack_2.6.3-1_all.deb ... 369s Unpacking r-cran-rdpack (2.6.3-1) ... 369s Selecting previously unselected package r-cran-plm. 369s Preparing to unpack .../313-r-cran-plm_2.6-7-1_all.deb ... 369s Unpacking r-cran-plm (2.6-7-1) ... 369s Selecting previously unselected package r-cran-praise. 369s Preparing to unpack .../314-r-cran-praise_1.0.0-4build2_all.deb ... 369s Unpacking r-cran-praise (1.0.0-4build2) ... 369s Selecting previously unselected package r-cran-randomforest. 369s Preparing to unpack .../315-r-cran-randomforest_4.7-1.2-1_amd64.deb ... 369s Unpacking r-cran-randomforest (4.7-1.2-1) ... 369s Selecting previously unselected package r-cran-sp. 369s Preparing to unpack .../316-r-cran-sp_1%3a2.2-0+dfsg-1_amd64.deb ... 369s Unpacking r-cran-sp (1:2.2-0+dfsg-1) ... 369s Selecting previously unselected package r-cran-terra. 369s Preparing to unpack .../317-r-cran-terra_1.8-70-1build2_amd64.deb ... 369s Unpacking r-cran-terra (1.8-70-1build2) ... 369s Selecting previously unselected package r-cran-raster. 369s Preparing to unpack .../318-r-cran-raster_3.6-32-1_amd64.deb ... 369s Unpacking r-cran-raster (3.6-32-1) ... 369s Selecting previously unselected package r-cran-tinytex. 369s Preparing to unpack .../319-r-cran-tinytex_0.58-1_all.deb ... 369s Unpacking r-cran-tinytex (0.58-1) ... 369s Selecting previously unselected package libjs-modernizr. 369s Preparing to unpack .../320-libjs-modernizr_3.13.0-0.1build1_all.deb ... 369s Unpacking libjs-modernizr (3.13.0-0.1build1) ... 369s Selecting previously unselected package r-cran-xtable. 369s Preparing to unpack .../321-r-cran-xtable_1%3a1.8-4-2build1_all.deb ... 369s Unpacking r-cran-xtable (1:1.8-4-2build1) ... 369s Selecting previously unselected package r-cran-sourcetools. 369s Preparing to unpack .../322-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 369s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 369s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 369s Preparing to unpack .../323-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 369s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 369s Selecting previously unselected package r-cran-shiny. 369s Preparing to unpack .../324-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 369s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 369s Selecting previously unselected package r-cran-rmarkdown. 369s Preparing to unpack .../325-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 369s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 369s Selecting previously unselected package r-cran-survival. 369s Preparing to unpack .../326-r-cran-survival_3.8-3-1_amd64.deb ... 369s Unpacking r-cran-survival (3.8-3-1) ... 369s Selecting previously unselected package r-cran-rpart. 369s Preparing to unpack .../327-r-cran-rpart_4.1.24-1_amd64.deb ... 369s Unpacking r-cran-rpart (4.1.24-1) ... 369s Selecting previously unselected package r-cran-xts. 369s Preparing to unpack .../328-r-cran-xts_0.14.1-1_amd64.deb ... 369s Unpacking r-cran-xts (0.14.1-1) ... 369s Selecting previously unselected package r-cran-spacetime. 369s Preparing to unpack .../329-r-cran-spacetime_1.3-3-2_all.deb ... 369s Unpacking r-cran-spacetime (1.3-3-2) ... 369s Selecting previously unselected package r-cran-spatstat.utils. 369s Preparing to unpack .../330-r-cran-spatstat.utils_3.1-3-1_amd64.deb ... 369s Unpacking r-cran-spatstat.utils (3.1-3-1) ... 369s Selecting previously unselected package r-cran-spatstat.data. 369s Preparing to unpack .../331-r-cran-spatstat.data_3.1-6-1_all.deb ... 369s Unpacking r-cran-spatstat.data (3.1-6-1) ... 369s Selecting previously unselected package r-cran-spatstat.univar. 369s Preparing to unpack .../332-r-cran-spatstat.univar_3.1-2-1_amd64.deb ... 369s Unpacking r-cran-spatstat.univar (3.1-2-1) ... 369s Selecting previously unselected package r-cran-spatstat.geom. 369s Preparing to unpack .../333-r-cran-spatstat.geom_3.3-6-1_amd64.deb ... 369s Unpacking r-cran-spatstat.geom (3.3-6-1) ... 369s Selecting previously unselected package r-cran-spatstat.random. 369s Preparing to unpack .../334-r-cran-spatstat.random_3.3-3-1_amd64.deb ... 369s Unpacking r-cran-spatstat.random (3.3-3-1) ... 369s Selecting previously unselected package r-cran-tensor. 369s Preparing to unpack .../335-r-cran-tensor_1.5-4build1_all.deb ... 369s Unpacking r-cran-tensor (1.5-4build1) ... 369s Selecting previously unselected package r-cran-spatstat.sparse. 369s Preparing to unpack .../336-r-cran-spatstat.sparse_3.1-0-1_amd64.deb ... 369s Unpacking r-cran-spatstat.sparse (3.1-0-1) ... 369s Selecting previously unselected package r-cran-spatstat.explore. 369s Preparing to unpack .../337-r-cran-spatstat.explore_3.3-4-1_amd64.deb ... 369s Unpacking r-cran-spatstat.explore (3.3-4-1) ... 369s Selecting previously unselected package r-cran-spatstat.model. 369s Preparing to unpack .../338-r-cran-spatstat.model_3.3-4-1_amd64.deb ... 369s Unpacking r-cran-spatstat.model (3.3-4-1) ... 369s Selecting previously unselected package r-cran-spatstat.linnet. 369s Preparing to unpack .../339-r-cran-spatstat.linnet_3.2-5-1_amd64.deb ... 369s Unpacking r-cran-spatstat.linnet (3.2-5-1) ... 369s Selecting previously unselected package r-cran-spatstat. 369s Preparing to unpack .../340-r-cran-spatstat_3.3-1-1_amd64.deb ... 369s Unpacking r-cran-spatstat (3.3-1-1) ... 369s Selecting previously unselected package r-cran-waldo. 369s Preparing to unpack .../341-r-cran-waldo_0.6.2-1_all.deb ... 369s Unpacking r-cran-waldo (0.6.2-1) ... 370s Selecting previously unselected package r-cran-testthat. 370s Preparing to unpack .../342-r-cran-testthat_3.2.3-1_amd64.deb ... 370s Unpacking 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(1.4.7+dfsg-1) ... 372s Setting up r-cran-gridextra (2.3-3build2) ... 372s Setting up r-cran-memoise (2.0.1-1build1) ... 372s Setting up r-cran-covr (3.6.4+dfsg-1) ... 372s Setting up r-cran-promises (1.3.2+dfsg-1) ... 372s Setting up r-cran-purrr (1.0.4-1) ... 372s Setting up r-cran-e1071 (1.7-17-1) ... 372s Setting up r-cran-spatstat.data (3.1-6-1) ... 372s Setting up r-cran-maxlik (1.5-2.2-1) ... 372s Setting up r-cran-spacetime (1.3-3-2) ... 372s Setting up pkg-r-autopkgtest (20250812) ... 372s Setting up r-cran-spatstat.geom (3.3-6-1) ... 372s Setting up r-cran-pkgbuild (1.4.8-1) ... 372s Setting up r-cran-dplyr (1.1.4-4) ... 372s Setting up r-cran-pkgload (1.4.1-1) ... 372s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 372s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 372s Setting up r-cran-rpart (4.1.24-1) ... 372s Setting up r-cran-spatstat.random (3.3-3-1) ... 372s Setting up r-cran-plm (2.6-7-1) ... 372s Setting up r-cran-viridis (0.6.5-1) ... 372s Setting up r-cran-testthat (3.2.3-1) ... 372s Setting up r-cran-classint (0.4-11+dfsg-1) ... 372s Setting up r-cran-bslib (0.9.0+dfsg-3build1) ... 372s Setting up r-cran-spatstat.explore (3.3-4-1) ... 372s Setting up r-cran-ggthemes (5.2.0-1) ... 372s Setting up r-cran-tidyr (1.3.1-1) ... 372s Setting up r-cran-ggforce (0.4.2-1) ... 372s Setting up r-cran-spatstat.model (3.3-4-1) ... 372s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 372s Setting up r-cran-ncmeta (0.4.0-1) ... 372s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 372s Setting up r-cran-spatstat.linnet (3.2-5-1) ... 372s Setting up r-cran-spatstat (3.3-1-1) ... 372s Setting up libheif-plugin-aomdec:amd64 (1.21.2-1) ... 372s Setting up libheif-plugin-libde265:amd64 (1.21.2-1) ... 372s Setting up libheif1:amd64 (1.21.2-1) ... 372s Setting up libgdal38:amd64 (3.12.1+dfsg-1) ... 372s Setting up r-cran-terra (1.8-70-1build2) ... 372s Setting up r-cran-sf (1.0-19+dfsg-2build2) ... 372s Setting up r-cran-stars (0.6-8-1) ... 372s Setting up r-cran-areal (0.1.8+dfsg-2) ... 372s Setting up r-cran-raster (3.6-32-1) ... 372s Setting up r-cran-lwgeom (0.2-14-1) ... 372s Setting up r-cran-ncdfgeom (1.1.6+dfsg-1) ... 372s Processing triggers for libc-bin (2.42-2ubuntu4) ... 372s Processing triggers for man-db (2.13.1-1) ... 373s Processing triggers for install-info (7.2-5) ... 378s autopkgtest [18:01:15]: test environment configured for cross building 378s autopkgtest [18:01:15]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 378s autopkgtest [18:01:15]: test pkg-r-autopkgtest: [----------------------- 378s Test: Try to load the R library stars 378s 378s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 378s Copyright (C) 2025 The R Foundation for Statistical Computing 378s Platform: x86_64-pc-linux-gnu 378s 378s R is free software and comes with ABSOLUTELY NO WARRANTY. 378s You are welcome to redistribute it under certain conditions. 378s Type 'license()' or 'licence()' for distribution details. 378s 378s R is a collaborative project with many contributors. 378s Type 'contributors()' for more information and 378s 'citation()' on how to cite R or R packages in publications. 378s 378s Type 'demo()' for some demos, 'help()' for on-line help, or 378s 'help.start()' for an HTML browser interface to help. 378s Type 'q()' to quit R. 378s 378s > library('stars') 378s Loading required package: abind 378s Loading required package: sf 379s Linking to GEOS 3.14.1, GDAL 3.12.1, PROJ 9.7.0; sf_use_s2() is TRUE 379s > 379s autopkgtest [18:01:16]: test pkg-r-autopkgtest: -----------------------] 379s pkg-r-autopkgtest PASS 379s autopkgtest [18:01:16]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 380s autopkgtest [18:01:17]: @@@@@@@@@@@@@@@@@@@@ summary 380s run-unit-test PASS 380s pkg-r-autopkgtest PASS