0s autopkgtest [23:24:11]: starting date and time: 2026-02-09 23:24:11+0000 0s autopkgtest [23:24:11]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [23:24:11]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ysu6dkxz/out --timeout-copy=6000 --needs-internet=try -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:lattice --apt-upgrade r-bioc-gviz --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=lattice/0.22-9-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-7.secgroup --name adt-resolute-i386-r-bioc-gviz-20260209-232411-juju-7f2275-prod-proposed-migration-environment-20-2ea13e72-af9d-4cd5-ab52-e470e9088dc7 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-i386-r-bioc-gviz-20260209-232411-juju-7f2275-prod-proposed-migration-environment-20-2ea13e72-af9d-4cd5-ab52-e470e9088dc7 from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)... 209s autopkgtest [23:27:40]: testbed dpkg architecture: amd64 209s autopkgtest [23:27:40]: testbed apt version: 3.1.14 209s autopkgtest [23:27:40]: @@@@@@@@@@@@@@@@@@@@ test bed setup 209s autopkgtest [23:27:40]: testbed release detected to be: None 210s autopkgtest [23:27:41]: updating testbed package index (apt update) 210s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 210s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 210s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 210s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 211s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB] 214s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB] 214s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB] 214s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [210 kB] 214s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [249 kB] 214s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [5980 B] 214s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [316 B] 214s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1592 kB] 217s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [657 kB] 218s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [33.1 kB] 218s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [25.2 kB] 218s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [4320 B] 218s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [996 B] 219s Fetched 4752 kB in 8s (565 kB/s) 220s Reading package lists... 220s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 220s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 220s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 220s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 221s Reading package lists... 221s Reading package lists... 221s Building dependency tree... 221s Reading state information... 221s Calculating upgrade... 221s The following package was automatically installed and is no longer required: 221s libpython3.13 221s Use 'sudo apt autoremove' to remove it. 221s The following NEW packages will be installed: 221s libpython3.14 libpython3.14-minimal libpython3.14-stdlib 221s linux-headers-6.19.0-3 linux-headers-6.19.0-3-generic 221s linux-image-6.19.0-3-generic linux-modules-6.19.0-3-generic 221s linux-tools-6.19.0-3 linux-tools-6.19.0-3-generic 221s The following packages will be upgraded: 221s 3cpio amd64-microcode apt bpftool busybox-initramfs busybox-static 221s cryptsetup-bin dash dbus dbus-bin dbus-daemon dbus-session-bus-common 221s dbus-system-bus-common dbus-user-session debianutils dmsetup dracut-install 221s ethtool findutils gir1.2-girepository-3.0 gir1.2-glib-2.0 hwdata iproute2 221s iptables less libapt-pkg7.0 libattr1 libbpf1 libbsd0 libcryptsetup12 221s libdbus-1-3 libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common libdrm2 221s libevent-core-2.1-7t64 libgdbm-compat4t64 libgdbm6t64 libgirepository-2.0-0 221s libglib2.0-0t64 libglib2.0-data libgpm2 libgudev-1.0-0 libidn2-0 libip4tc2 221s libip6tc2 libjansson4 libkeyutils1 liblsof0 libmaxminddb0 221s libnetfilter-conntrack3 libnpth0t64 libonig5 libpcap0.8t64 libpci3 221s libsensors-config libsensors5 libusb-1.0-0 libwrap0 libxau6 libxkbcommon0 221s libxtables12 linux-generic linux-headers-generic linux-headers-virtual 221s linux-image-generic linux-image-virtual linux-perf linux-tools-common 221s linux-virtual lsof man-db mawk patch pciutils pnp.ids pollinate 221s python3-linkify-it python3-markdown-it python3-referencing sed 221s shared-mime-info tar tcpdump ubuntu-kernel-accessories ubuntu-standard wget 221s 87 upgraded, 9 newly installed, 0 to remove and 0 not upgraded. 221s Need to get 236 MB of archives. 221s After this operation, 339 MB of additional disk space will be used. 221s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 debianutils amd64 5.23.2build1 [93.3 kB] 221s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 dash amd64 0.5.12-12ubuntu3 [96.0 kB] 221s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB] 221s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB] 221s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB] 221s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB] 221s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libbsd0 amd64 0.12.2-2build2 [42.3 kB] 221s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB] 221s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB] 224s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB] 226s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-system-bus-common all 1.16.2-2ubuntu3 [55.8 kB] 226s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-session-bus-common all 1.16.2-2ubuntu3 [54.4 kB] 226s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-user-session amd64 1.16.2-2ubuntu3 [9696 B] 226s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-daemon amd64 1.16.2-2ubuntu3 [119 kB] 226s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-bin amd64 1.16.2-2ubuntu3 [40.1 kB] 226s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus amd64 1.16.2-2ubuntu3 [24.2 kB] 226s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libdbus-1-3 amd64 1.16.2-2ubuntu3 [185 kB] 226s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB] 226s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB] 226s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 ethtool amd64 1:6.15-3build1 [318 kB] 226s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-3.0 amd64 2.87.2-2 [25.2 kB] 226s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-2.0-0 amd64 2.87.2-2 [76.1 kB] 226s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-glib-2.0 amd64 2.87.2-2 [182 kB] 226s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-0t64 amd64 2.87.2-2 [1613 kB] 229s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libbpf1 amd64 1:1.6.2-1build1 [184 kB] 229s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 iptables amd64 1.8.11-2ubuntu3 [381 kB] 229s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libip4tc2 amd64 1.8.11-2ubuntu3 [24.2 kB] 229s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libip6tc2 amd64 1.8.11-2ubuntu3 [24.4 kB] 229s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libnetfilter-conntrack3 amd64 1.1.1-1 [47.5 kB] 229s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtables12 amd64 1.8.11-2ubuntu3 [36.6 kB] 229s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 iproute2 amd64 6.18.0-1ubuntu1 [1178 kB] 231s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB] 231s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libcryptsetup12 amd64 2:2.8.0-1ubuntu3 [283 kB] 231s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-data all 2.87.2-2 [58.2 kB] 231s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libidn2-0 amd64 2.3.8-4build1 [67.6 kB] 231s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB] 231s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB] 231s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB] 231s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 shared-mime-info amd64 2.4-5build3 [476 kB] 231s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB] 233s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B] 233s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB] 233s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm6t64 amd64 1.26-1build1 [36.5 kB] 233s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB] 233s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libjansson4 amd64 2.14-2build4 [33.2 kB] 233s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 lsof amd64 4.99.4+dfsg-2build2 [239 kB] 233s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsof0 amd64 4.99.4+dfsg-2build2 [56.5 kB] 233s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB] 233s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcap0.8t64 amd64 1.10.5-2ubuntu3 [154 kB] 233s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 pciutils amd64 1:3.14.0-1build2 [95.5 kB] 233s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libpci3 amd64 1:3.14.0-1build2 [38.1 kB] 233s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B] 233s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB] 233s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libusb-1.0-0 amd64 2:1.0.29-2build1 [56.9 kB] 233s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libxau6 amd64 1:1.0.11-1build2 [7502 B] 233s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon0 amd64 1.13.1-1 [159 kB] 233s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 man-db amd64 2.13.1-1build1 [1392 kB] 235s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 tcpdump amd64 4.99.5-2ubuntu3 [477 kB] 235s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 wget amd64 1.25.0-2ubuntu4 [353 kB] 235s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-standard amd64 1.564 [13.3 kB] 235s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.14.0-1ubuntu1 [285 kB] 235s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 bpftool amd64 7.7.0+6.19.0-3.3 [1229 kB] 237s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB] 237s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 cryptsetup-bin amd64 2:2.8.0-1ubuntu3 [228 kB] 237s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 dracut-install amd64 109-11ubuntu1 [45.8 kB] 237s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 hwdata all 0.394-1build1 [1566 B] 237s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 pnp.ids all 0.394-1build1 [29.6 kB] 237s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB] 237s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build2 [93.1 kB] 237s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm-compat4t64 amd64 1.26-1build1 [6796 B] 237s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libgudev-1.0-0 amd64 1:238-7build1 [15.9 kB] 237s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B] 238s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libonig5 amd64 6.9.10-1build1 [174 kB] 238s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB] 239s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB] 243s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14 amd64 3.14.2-1 [2568 kB] 247s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libwrap0 amd64 7.6.q-36build2 [48.5 kB] 247s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-modules-6.19.0-3-generic amd64 6.19.0-3.3 [171 MB] 580s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-6.19.0-3-generic amd64 6.19.0-3.3+1 [16.8 MB] 614s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB] 614s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-generic amd64 6.19.0-3.3 [1698 B] 614s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-generic amd64 6.19.0-3.3 [12.2 kB] 614s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-virtual amd64 6.19.0-3.3 [1700 B] 614s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-virtual amd64 6.19.0-3.3 [12.1 kB] 614s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-virtual amd64 6.19.0-3.3 [1646 B] 614s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3 all 6.19.0-3.3 [14.9 MB] 639s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3-generic amd64 6.19.0-3.3 [4330 kB] 651s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-generic amd64 6.19.0-3.3 [12.0 kB] 651s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-perf amd64 6.19.0-3.3 [4480 kB] 661s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-common all 6.19.0-3.3 [345 kB] 661s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3 amd64 6.19.0-3.3 [1455 kB] 664s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3-generic amd64 6.19.0-3.3 [1612 B] 664s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB] 664s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB] 664s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB] 664s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-kernel-accessories amd64 1.564 [13.1 kB] 664s dpkg-preconfigure: unable to re-open stdin: No such file or directory 664s Fetched 236 MB in 7min 23s (533 kB/s) 664s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 664s Preparing to unpack .../debianutils_5.23.2build1_amd64.deb ... 664s Unpacking debianutils (5.23.2build1) over (5.23.2) ... 664s Setting up debianutils (5.23.2build1) ... 664s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 664s Preparing to unpack .../dash_0.5.12-12ubuntu3_amd64.deb ... 664s Unpacking dash (0.5.12-12ubuntu3) over (0.5.12-12ubuntu2) ... 664s Setting up dash (0.5.12-12ubuntu3) ... 664s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 664s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ... 664s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ... 664s Setting up findutils (4.10.0-3build2) ... 664s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 664s Preparing to unpack .../sed_4.9-2build3_amd64.deb ... 664s Unpacking sed (4.9-2build3) over (4.9-2build2) ... 665s Setting up sed (4.9-2build3) ... 665s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 665s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ... 665s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ... 665s Setting up tar (1.35+dfsg-3.1build2) ... 665s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 665s Preparing to unpack .../libattr1_1%3a2.5.2-3build2_amd64.deb ... 665s Unpacking libattr1:amd64 (1:2.5.2-3build2) over (1:2.5.2-3build1) ... 665s Setting up libattr1:amd64 (1:2.5.2-3build2) ... 665s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83957 files and directories currently installed.) 665s Preparing to unpack .../00-libbsd0_0.12.2-2build2_amd64.deb ... 665s Unpacking libbsd0:amd64 (0.12.2-2build2) over (0.12.2-2build1) ... 665s Preparing to unpack .../01-mawk_1.3.4.20260129-1_amd64.deb ... 665s Unpacking mawk (1.3.4.20260129-1) over (1.3.4.20250131-2) ... 665s Preparing to unpack .../02-libapt-pkg7.0_3.1.15_amd64.deb ... 665s Unpacking libapt-pkg7.0:amd64 (3.1.15) over (3.1.14) ... 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... 694s I: /boot/vmlinuz is now a symlink to vmlinuz-6.19.0-3-generic 694s I: /boot/initrd.img is now a symlink to initrd.img-6.19.0-3-generic 694s Setting up libdbus-1-3:amd64 (1.16.2-2ubuntu3) ... 694s Setting up shared-mime-info (2.4-5build3) ... 694s Setting up patch (2.8-2build1) ... 694s Setting up gir1.2-glib-2.0:amd64 (2.87.2-2) ... 694s Setting up libsensors5:amd64 (1:3.6.2-2build1) ... 694s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ... 694s Setting up libxtables12:amd64 (1.8.11-2ubuntu3) ... 694s Setting up lsof (4.99.4+dfsg-2build2) ... 694s Setting up libpci3:amd64 (1:3.14.0-1build2) ... 694s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ... 694s Setting up dracut-install (109-11ubuntu1) ... 694s Setting up dmsetup (2:1.02.205-2ubuntu3) ... 694s Setting up libnetfilter-conntrack3:amd64 (1.1.1-1) ... 694s Setting up pnp.ids (0.394-1build1) ... 694s Setting up dbus-session-bus-common (1.16.2-2ubuntu3) ... 694s Setting up python3-linkify-it (2.0.3-1ubuntu3) ... 694s Setting up libpcap0.8t64:amd64 (1.10.5-2ubuntu3) ... 694s Setting up libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) ... 694s Setting up mawk (1.3.4.20260129-1) ... 694s Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) ... 694s Setting up libusb-1.0-0:amd64 (2:1.0.29-2build1) ... 694s Setting up libapt-pkg7.0:amd64 (3.1.15) ... 694s Setting up linux-image-virtual (6.19.0-3.3) ... 694s Setting up dbus-system-bus-common (1.16.2-2ubuntu3) ... 694s Setting up libbsd0:amd64 (0.12.2-2build2) ... 694s Setting up libdrm-common (2.4.131-1) ... 694s Setting up dbus-bin (1.16.2-2ubuntu3) ... 694s Setting up libonig5:amd64 (6.9.10-1build1) ... 694s Setting up libgudev-1.0-0:amd64 (1:238-7build1) ... 694s Setting up libbpf1:amd64 (1:1.6.2-1build1) ... 694s Setting up ethtool (1:6.15-3build1) ... 694s Setting up python3-referencing (0.36.2-1ubuntu2) ... 694s Setting up libxkbcommon0:amd64 (1.13.1-1) ... 694s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ... 694s Setting up linux-headers-6.19.0-3-generic (6.19.0-3.3) ... 694s Setting up tcpdump (4.99.5-2ubuntu3) ... 694s Setting up linux-image-generic (6.19.0-3.3) ... 694s Setting up apt (3.1.15) ... 694s Setting up wget (1.25.0-2ubuntu4) ... 694s Setting up libgirepository-2.0-0:amd64 (2.87.2-2) ... 694s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ... 694s Setting up iptables (1.8.11-2ubuntu3) ... 694s Setting up iproute2 (6.18.0-1ubuntu1) ... 694s Setting up linux-headers-generic (6.19.0-3.3) ... 694s Setting up dbus-daemon (1.16.2-2ubuntu3) ... 694s Setting up gir1.2-girepository-3.0:amd64 (2.87.2-2) ... 694s Setting up hwdata (0.394-1build1) ... 694s Setting up dbus-user-session (1.16.2-2ubuntu3) ... 694s Setting up dbus (1.16.2-2ubuntu3) ... 694s A reboot is required to replace the running dbus-daemon. 694s Please reboot the system when convenient. 694s Setting up pciutils (1:3.14.0-1build2) ... 694s Setting up python3-markdown-it (3.0.0-3build1) ... 694s Setting up libdrm2:amd64 (2.4.131-1) ... 694s Setting up libpython3.14:amd64 (3.14.2-1) ... 694s Setting up linux-tools-common (6.19.0-3.3) ... 694s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ... 694s Setting up linux-headers-virtual (6.19.0-3.3) ... 694s Setting up linux-generic (6.19.0-3.3) ... 694s Setting up linux-tools-6.19.0-3 (6.19.0-3.3) ... 694s Setting up ubuntu-standard (1.564) ... 694s Setting up linux-virtual (6.19.0-3.3) ... 694s Setting up linux-perf (6.19.0-3.3) ... 694s Setting up linux-tools-6.19.0-3-generic (6.19.0-3.3) ... 694s Processing triggers for debianutils (5.23.2build1) ... 694s Processing triggers for install-info (7.2-5) ... 694s Processing triggers for initramfs-tools (0.150ubuntu7) ... 694s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic 694s Processing triggers for libc-bin (2.42-2ubuntu4) ... 694s Processing triggers for linux-image-6.19.0-3-generic (6.19.0-3.3+1) ... 694s /etc/kernel/postinst.d/initramfs-tools: 694s update-initramfs: Generating /boot/initrd.img-6.19.0-3-generic 696s /etc/kernel/postinst.d/zz-update-grub: 696s Sourcing file `/etc/default/grub' 696s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 696s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 696s Generating grub configuration file ... 696s Found linux image: /boot/vmlinuz-6.19.0-3-generic 696s Found initrd image: /boot/initrd.img-6.19.0-3-generic 696s Found linux image: /boot/vmlinuz-6.18.0-9-generic 696s Found initrd image: /boot/initrd.img-6.18.0-9-generic 696s Warning: os-prober will not be executed to detect other bootable partitions. 696s Systems on them will not be added to the GRUB boot configuration. 696s Check GRUB_DISABLE_OS_PROBER documentation entry. 696s Adding boot menu entry for UEFI Firmware Settings ... 696s done 696s autopkgtest [23:35:47]: upgrading testbed (apt dist-upgrade and autopurge) 697s Reading package lists... 697s Building dependency tree... 697s Reading state information... 697s Calculating upgrade... 697s The following package was automatically installed and is no longer required: 697s libpython3.13 697s Use 'sudo apt autoremove' to remove it. 697s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 697s Reading package lists... 697s Building dependency tree... 697s Reading state information... 697s Solving dependencies... 697s The following packages will be REMOVED: 697s libpython3.13* 698s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. 698s After this operation, 7599 kB disk space will be freed. 698s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 125268 files and directories currently installed.) 698s Removing libpython3.13:amd64 (3.13.11-1) ... 698s Processing triggers for libc-bin (2.42-2ubuntu4) ... 698s autopkgtest [23:35:49]: rebooting testbed after setup commands that affected boot 726s autopkgtest [23:36:17]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 20:01:24 UTC 2026 728s autopkgtest [23:36:19]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-gviz 736s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-gviz 1.50.0+dfsg-2 (dsc) [2483 B] 736s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-gviz 1.50.0+dfsg-2 (tar) [3826 kB] 736s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-gviz 1.50.0+dfsg-2 (diff) [7412 B] 736s gpgv: Signature made Tue Jan 14 10:31:19 2025 UTC 736s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 736s gpgv: issuer "crusoe@debian.org" 736s gpgv: Can't check signature: No public key 736s dpkg-source: warning: cannot verify inline signature for ./r-bioc-gviz_1.50.0+dfsg-2.dsc: no acceptable signature found 736s autopkgtest [23:36:27]: testing package r-bioc-gviz version 1.50.0+dfsg-2 736s autopkgtest [23:36:27]: build not needed 738s autopkgtest [23:36:29]: test pkg-r-autopkgtest: preparing testbed 738s Reading package lists... 738s Building dependency tree... 738s Reading state information... 738s Solving dependencies... 738s The following NEW packages will be installed: 738s build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu 738s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 738s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 738s g++ g++-15 g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-15 738s gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-15 738s gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 738s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 738s libboost-dev libboost1.90-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 738s libcc1-0 libcrypt-dev libdatrie1 libdeflate-dev libdeflate0 libfontconfig1 738s libgcc-15-dev libgfortran-15-dev libgfortran5 libgomp1 libgraphite2-3 738s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 738s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 738s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 738s libjs-highlight.js libjs-jquery libjs-jquery-datatables 738s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 738s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 738s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 738s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 738s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libmpfi0 libncurses-dev 738s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 738s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 738s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libquadmath0 738s libreadline-dev libsharpyuv0 libsm6 libstdc++-15-dev libsynctex2 libtcl8.6 738s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 738s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 738s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzstd-dev 738s libzzip-0-13t64 linux-libc-dev node-bootstrap-sass node-html5shiv 738s node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin 738s r-base-core r-base-dev r-bioc-annotationdbi r-bioc-annotationfilter 738s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 738s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart 738s r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-delayedarray 738s r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata 738s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 738s r-bioc-gviz r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 738s r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 738s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 738s r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-variantannotation 738s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass 738s r-cran-backports r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 738s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio 738s r-cran-bslib r-cran-cachem r-cran-callr r-cran-checkmate r-cran-chron 738s r-cran-cli r-cran-cluster r-cran-codetools r-cran-colorspace 738s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table 738s r-cran-dbi r-cran-dbplyr r-cran-deldir r-cran-desc r-cran-dichromat 738s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi 738s r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 738s r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs r-cran-futile.logger 738s r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue 738s r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-hms 738s r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv 738s r-cran-httr r-cran-httr2 r-cran-interp r-cran-isoband r-cran-jpeg 738s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 738s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 738s r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass 738s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime 738s r-cran-nlme r-cran-nnet r-cran-openssl r-cran-pillar r-cran-pkgbuild 738s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png 738s r-cran-praise r-cran-prettyunits r-cran-processx r-cran-progress 738s r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-rappdirs 738s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 738s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rpart 738s r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-sass r-cran-scales 738s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr 738s r-cran-survival r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr 738s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridis 738s r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml 738s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 738s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 738s x11-common xdg-utils zip zlib1g-dev 739s 0 upgraded, 331 newly installed, 0 to remove and 0 not upgraded. 739s Need to get 509 MB of archives. 739s After this operation, 1489 MB of additional disk space will be used. 739s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libc-dev-bin amd64 2.42-2ubuntu4 [23.3 kB] 739s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.19.0-3.3 [1846 kB] 743s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB] 743s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB] 743s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libc6-dev amd64 2.42-2ubuntu4 [2207 kB] 748s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB] 749s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB] 749s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB] 774s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B] 774s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B] 774s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB] 774s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 15.2.0-12ubuntu1 [47.4 kB] 774s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-12ubuntu1 [151 kB] 774s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 15.2.0-12ubuntu1 [29.5 kB] 774s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 15.2.0-12ubuntu1 [3070 kB] 779s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 15.2.0-12ubuntu1 [1360 kB] 781s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 15.2.0-12ubuntu1 [2757 kB] 786s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 15.2.0-12ubuntu1 [1210 kB] 788s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 15.2.0-12ubuntu1 [1685 kB] 791s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 15.2.0-12ubuntu1 [153 kB] 791s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB] 796s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB] 840s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB] 841s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B] 841s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B] 841s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB] 845s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB] 869s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB] 869s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B] 869s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B] 869s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B] 869s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 dctrl-tools amd64 2.24-3build4 [104 kB] 869s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 869s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 871s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB] 871s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB] 871s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB] 871s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 873s Get:39 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB] 873s Get:40 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-lmodern all 2.005-1build1 [4788 kB] 883s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB] 889s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-12ubuntu1 [939 kB] 891s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-12ubuntu1 [973 kB] 894s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [13.6 MB] 923s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-12ubuntu1 [18.1 kB] 923s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1014 B] 923s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran amd64 4:15.2.0-4ubuntu1 [1172 B] 923s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB] 923s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 javascript-common all 12+nmu1build1 [4864 B] 923s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 923s Get:51 http://ftpmaster.internal/ubuntu resolute/universe amd64 liblatex-tounicode-perl all 1.93-1 [29.2 kB] 923s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 libbibtex-parser-perl all 1.93+dfsg-1 [17.4 kB] 923s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 923s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas-dev amd64 3.12.1-7ubuntu1 [235 kB] 923s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost1.90-dev amd64 1.90.0-2ubuntu1 [11.5 MB] 945s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libboost-dev amd64 1.90.0.0ubuntu3 [4764 B] 945s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-dev amd64 1.0.8-6build2 [36.2 kB] 945s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB] 945s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB] 945s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B] 945s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 945s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB] 946s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB] 946s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2build1 [51.6 kB] 946s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate-dev amd64 1.23-2build1 [58.8 kB] 946s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 946s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB] 946s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 946s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB] 946s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB] 967s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu3 [156 kB] 967s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8-dev amd64 2.1.5-4ubuntu3 [300 kB] 967s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 967s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 967s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 967s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB] 967s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB] 967s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB] 968s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-d3 all 3.5.17-4build1 [136 kB] 968s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 968s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB] 968s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 968s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB] 968s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 968s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B] 968s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 968s Get:87 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB] 968s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB] 968s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 968s Get:90 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-prettify all 2015.12.04+dfsg-3 [41.4 kB] 968s Get:91 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkpathsea6 amd64 2025.20250727.75242+ds-5build1 [66.0 kB] 968s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 973s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack-dev amd64 3.12.1-7ubuntu1 [5433 kB] 982s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 982s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 liblua5.4-0 amd64 5.4.8-1 [174 kB] 982s Get:96 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmpfi0 amd64 1.5.4+ds-4build1 [36.6 kB] 982s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 libncurses-dev amd64 6.6+20251231-1 [389 kB] 982s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB] 982s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB] 982s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB] 982s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB] 982s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB] 982s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB] 982s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB] 982s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB] 982s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB] 982s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-posix3 amd64 10.46-1 [7354 B] 982s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-dev amd64 10.46-1 [832 kB] 983s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 libpkgconf3 amd64 1.8.1-4build1 [32.8 kB] 983s Get:110 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB] 985s Get:111 http://ftpmaster.internal/ubuntu resolute/main amd64 libpng-dev amd64 1.6.54-1 [273 kB] 985s Get:112 http://ftpmaster.internal/ubuntu resolute/universe amd64 libpotrace0 amd64 1.16-2build2 [17.9 kB] 985s Get:113 http://ftpmaster.internal/ubuntu resolute/universe amd64 libptexenc1 amd64 2025.20250727.75242+ds-5build1 [46.4 kB] 985s Get:114 http://ftpmaster.internal/ubuntu resolute/main amd64 libreadline-dev amd64 8.3-3 [189 kB] 985s Get:115 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 985s Get:116 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB] 985s Get:117 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsynctex2 amd64 2025.20250727.75242+ds-5build1 [62.1 kB] 985s Get:118 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB] 987s Get:119 http://ftpmaster.internal/ubuntu resolute/universe amd64 libteckit0 amd64 2.5.13+ds-1 [431 kB] 987s Get:120 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtexlua53-5 amd64 2025.20250727.75242+ds-5build1 [125 kB] 987s Get:121 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 987s Get:122 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 987s Get:123 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 987s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 987s Get:125 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 987s Get:126 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 989s Get:127 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB] 989s Get:128 http://ftpmaster.internal/ubuntu resolute/main amd64 libxmu6 amd64 2:1.1.3-4 [48.9 kB] 989s Get:129 http://ftpmaster.internal/ubuntu resolute/main amd64 libxpm4 amd64 1:3.5.17-1build3 [37.3 kB] 989s Get:130 http://ftpmaster.internal/ubuntu resolute/main amd64 libxaw7 amd64 2:1.0.16-1build1 [190 kB] 989s Get:131 http://ftpmaster.internal/ubuntu resolute/main amd64 libxi6 amd64 2:1.8.2-2 [33.1 kB] 989s Get:132 http://ftpmaster.internal/ubuntu resolute/main amd64 libzstd-dev amd64 1.5.7+dfsg-3 [376 kB] 989s Get:133 http://ftpmaster.internal/ubuntu resolute/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.2 [30.1 kB] 989s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 989s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 989s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB] 989s Get:137 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 989s Get:138 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc amd64 3.1.11.1+ds-4 [27.2 MB] 1040s Get:139 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu3 [175 kB] 1040s Get:140 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB] 1040s Get:141 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB] 1041s Get:142 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB] 1096s Get:143 http://ftpmaster.internal/ubuntu resolute/main amd64 liblzma-dev amd64 5.8.2-2 [179 kB] 1096s Get:144 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf-bin amd64 1.8.1-4build1 [21.7 kB] 1096s Get:145 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf amd64 1.8.1-4build1 [16.8 kB] 1096s Get:146 http://ftpmaster.internal/ubuntu resolute/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB] 1096s Get:147 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-dev all 4.5.2-1ubuntu2 [1880 B] 1096s Get:148 http://ftpmaster.internal/ubuntu resolute/universe amd64 pkg-r-autopkgtest all 20250812 [6158 B] 1096s Get:149 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 1097s Get:150 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 1102s Get:151 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 1106s Get:152 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-iranges amd64 2.40.1-3 [2309 kB] 1111s Get:153 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbi all 1.2.3-1build1 [855 kB] 1113s Get:154 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB] 1113s Get:155 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bit64 amd64 4.6.0-1-4 [491 kB] 1113s Get:156 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB] 1116s Get:157 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 1118s Get:158 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 1118s Get:159 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] 1118s Get:160 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 1120s Get:161 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-blob all 1.3.0-1 [54.1 kB] 1120s Get:162 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 1120s Get:163 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 1120s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-memoise all 2.0.1-1build1 [54.5 kB] 1120s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB] 1120s Get:166 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plogr all 0.2.0-3build2 [15.8 kB] 1120s Get:167 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cpp11 all 0.5.3-1 [242 kB] 1120s Get:168 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB] 1123s Get:169 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-curl amd64 7.0.0+dfsg-1 [202 kB] 1123s Get:170 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 1123s Get:171 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 1123s Get:172 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 1123s Get:173 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 1123s Get:174 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 1123s Get:175 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 1123s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 1123s Get:177 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 1123s Get:178 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 1123s Get:179 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 1124s Get:180 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 1124s Get:181 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 1147s Get:182 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 1154s Get:183 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 1154s Get:184 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 1179s Get:185 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-3 [183 kB] 1179s Get:186 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 1187s Get:187 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 1191s Get:188 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lazyeval amd64 0.2.2-1build2 [146 kB] 1191s Get:189 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-annotationfilter all 1.30.0+dfsg-2 [247 kB] 1191s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-generics all 0.1.4-1 [84.0 kB] 1191s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 1191s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 1191s Get:193 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pillar all 1.11.1+dfsg-1 [456 kB] 1191s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fansi amd64 1.0.6-2 [626 kB] 1192s Get:195 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 1192s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 1192s Get:197 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 1192s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 1195s Get:199 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 1196s Get:200 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringi amd64 1.8.4-1build2 [908 kB] 1198s Get:201 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 1198s Get:202 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 1200s Get:203 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbplyr all 2.5.1+dfsg-1 [1237 kB] 1202s Get:204 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 1202s Get:205 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB] 1202s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 1202s Get:207 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 1202s Get:208 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lambda.r all 1.2.4-2build2 [118 kB] 1202s Get:209 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-futile.options all 1.0.1-3build2 [20.5 kB] 1202s Get:210 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-futile.logger all 1.4.3-4build2 [98.4 kB] 1202s Get:211 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-snow all 1:0.4.4-2build1 [98.7 kB] 1202s Get:212 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-codetools all 0.2-20-1build1 [91.1 kB] 1202s Get:213 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 1202s Get:214 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 1205s Get:215 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-base64enc amd64 0.1-3-3build1 [28.5 kB] 1205s Get:216 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB] 1205s Get:217 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 1205s Get:218 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.5-1 [117 kB] 1205s Get:219 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB] 1206s Get:220 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 1206s Get:221 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 1206s Get:222 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB] 1218s Get:223 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB] 1220s Get:224 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB] 1220s Get:225 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 1220s Get:226 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rappdirs amd64 0.3.3-1build1 [49.3 kB] 1220s Get:227 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 1222s Get:228 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB] 1230s Get:229 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 1232s Get:230 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tinytex all 0.58-1 [148 kB] 1232s Get:231 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-modernizr all 3.13.0-0.1build1 [100 kB] 1232s Get:232 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.22-1 [85.5 kB] 1232s Get:233 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 1232s Get:234 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB] 1236s Get:235 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 1236s Get:236 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 1236s Get:237 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 1236s Get:238 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xtable all 1:1.8-4-2build1 [691 kB] 1237s Get:239 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 1237s Get:240 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB] 1237s Get:241 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 1237s Get:242 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 1243s Get:243 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rmarkdown all 2.30+dfsg-1 [1501 kB] 1245s Get:244 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 1247s Get:245 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 1247s Get:246 http://ftpmaster.internal/ubuntu resolute/universe amd64 tex-common all 6.20 [30.0 kB] 1247s Get:247 http://ftpmaster.internal/ubuntu resolute/main amd64 t1utils amd64 1.41-4build4 [62.7 kB] 1247s Get:248 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-binaries amd64 2025.20250727.75242+ds-5build1 [8747 kB] 1265s Get:249 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-base all 2025.20260124-1 [22.8 MB] 1307s Get:250 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-latex-base all 2025.20260124-1 [1321 kB] 1309s Get:251 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-bibtex-extra all 2025.20260124-1 [80.6 MB] 1476s Get:252 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 1476s Get:253 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 1476s Get:254 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-hms all 1.1.4-1 [102 kB] 1476s Get:255 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 1476s Get:256 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 1476s Get:257 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr2 all 1.1.1-2 [752 kB] 1478s Get:258 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xml2 amd64 1.4.1-1 [329 kB] 1478s Get:259 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biomart all 2.62.1+dfsg-1 [444 kB] 1478s Get:260 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 1481s Get:261 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 1481s Get:262 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB] 1481s Get:263 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridislite all 0.4.3-1 [1088 kB] 1483s Get:264 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-scales all 1.4.0-1 [725 kB] 1485s Get:265 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 1485s Get:266 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 1487s Get:267 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB] 1490s Get:268 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-lattice amd64 0.22-9-1 [1399 kB] 1493s Get:269 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-nlme amd64 3.1.168-1 [2320 kB] 1497s Get:270 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrix amd64 1.7-4-1 [4220 kB] 1509s Get:271 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mgcv amd64 1.9-4-1 [3556 kB] 1517s Get:272 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 1525s Get:273 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cluster amd64 2.1.8.2-1 [570 kB] 1526s Get:274 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-survival amd64 3.8-6-1 [8274 kB] 1543s Get:275 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rpart amd64 4.1.24-1build1 [666 kB] 1545s Get:276 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-nnet amd64 7.3-20-1 [116 kB] 1545s Get:277 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-foreign amd64 0.8.91-1 [245 kB] 1545s Get:278 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-gridextra all 2.3-3build2 [1032 kB] 1547s Get:279 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-data.table amd64 1.17.0+dfsg-1 [2168 kB] 1553s Get:280 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-backports amd64 1.5.0-2 [121 kB] 1554s Get:281 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-checkmate amd64 2.3.2-1 [706 kB] 1557s Get:282 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 1557s Get:283 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rstudioapi all 0.18.0-1 [326 kB] 1557s Get:284 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmltable all 2.4.3-1 [388 kB] 1557s Get:285 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 1563s Get:286 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 1563s Get:287 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-chron amd64 2.3-62-1 [189 kB] 1563s Get:288 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jpeg amd64 0.1-10-1 [31.4 kB] 1563s Get:289 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 1563s Get:290 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 1569s Get:291 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB] 1572s Get:292 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-latticeextra all 0.6-31-1 [2177 kB] 1577s Get:293 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-acepack amd64 1.6.3-1 [86.2 kB] 1577s Get:294 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 1583s Get:295 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-hmisc amd64 5.2-5-2 [3608 kB] 1591s Get:296 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 1591s Get:297 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB] 1595s Get:298 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 1595s Get:299 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-abind all 1.4-8-1build1 [67.0 kB] 1595s Get:300 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 1600s Get:301 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-2 [1391 kB] 1605s Get:302 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 1615s Get:303 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 1619s Get:304 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB] 1619s Get:305 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB] 1624s Get:306 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB] 1634s Get:307 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB] 1638s Get:308 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xml amd64 3.99-0.20-1 [1751 kB] 1645s Get:309 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB] 1646s Get:310 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB] 1646s Get:311 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 1647s Get:312 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-rtracklayer amd64 1.66.0-3 [5225 kB] 1658s Get:313 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 1660s Get:314 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-bsgenome all 1.74.0-2 [7001 kB] 1674s Get:315 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-variantannotation amd64 1.52.0-2 [3642 kB] 1681s Get:316 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-protgenerics all 1.38.0-2 [239 kB] 1682s Get:317 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-ensembldb all 2.30.0+dfsg-3 [1520 kB] 1687s Get:318 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biovizbase amd64 1.54.0-2 [2857 kB] 1693s Get:319 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-gviz all 1.50.0+dfsg-2 [4881 kB] 1702s Get:320 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 1702s Get:321 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB] 1702s Get:322 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 1702s Get:323 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 1702s Get:324 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 1702s Get:325 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-diffobj amd64 0.3.5-1build1 [1156 kB] 1704s Get:326 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgbuild all 1.4.8-1 [219 kB] 1704s Get:327 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rprojroot all 2.1.1-1 [131 kB] 1704s Get:328 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgload all 1.4.1-1 [252 kB] 1704s Get:329 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-praise all 1.0.0-4build2 [20.9 kB] 1704s Get:330 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-waldo all 0.6.2-1 [153 kB] 1704s Get:331 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 1708s Preconfiguring packages ... 1708s Fetched 509 MB in 16min 9s (525 kB/s) 1708s Selecting previously unselected package libc-dev-bin. 1708s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 125264 files and directories currently installed.) 1708s Preparing to unpack .../000-libc-dev-bin_2.42-2ubuntu4_amd64.deb ... 1708s Unpacking libc-dev-bin (2.42-2ubuntu4) ... 1708s Selecting previously unselected package linux-libc-dev:amd64. 1708s Preparing to unpack .../001-linux-libc-dev_6.19.0-3.3_amd64.deb ... 1708s Unpacking linux-libc-dev:amd64 (6.19.0-3.3) ... 1708s Selecting previously unselected package libcrypt-dev:amd64. 1708s Preparing to unpack .../002-libcrypt-dev_1%3a4.5.1-1_amd64.deb ... 1708s Unpacking libcrypt-dev:amd64 (1:4.5.1-1) ... 1708s Selecting previously unselected package rpcsvc-proto. 1708s Preparing to unpack .../003-rpcsvc-proto_1.4.3-1build1_amd64.deb ... 1708s Unpacking rpcsvc-proto (1.4.3-1build1) ... 1708s Selecting previously unselected package libc6-dev:amd64. 1708s Preparing to unpack .../004-libc6-dev_2.42-2ubuntu4_amd64.deb ... 1708s Unpacking libc6-dev:amd64 (2.42-2ubuntu4) ... 1708s Selecting previously unselected package libisl23:amd64. 1708s Preparing to unpack .../005-libisl23_0.27-1build1_amd64.deb ... 1708s Unpacking libisl23:amd64 (0.27-1build1) ... 1708s Selecting previously unselected package libmpc3:amd64. 1708s Preparing to unpack .../006-libmpc3_1.3.1-2_amd64.deb ... 1708s Unpacking libmpc3:amd64 (1.3.1-2) ... 1708s Selecting previously unselected package cpp-15-x86-64-linux-gnu. 1708s Preparing to unpack .../007-cpp-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ... 1708s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ... 1708s Selecting previously unselected package cpp-15. 1708s Preparing to unpack .../008-cpp-15_15.2.0-12ubuntu1_amd64.deb ... 1708s Unpacking cpp-15 (15.2.0-12ubuntu1) ... 1708s Selecting previously unselected package cpp-x86-64-linux-gnu. 1708s Preparing to unpack .../009-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 1708s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 1708s Selecting previously unselected package cpp. 1708s Preparing to unpack .../010-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ... 1708s Unpacking cpp (4:15.2.0-4ubuntu1) ... 1708s Selecting previously unselected package libcc1-0:amd64. 1708s Preparing to unpack .../011-libcc1-0_15.2.0-12ubuntu1_amd64.deb ... 1708s Unpacking libcc1-0:amd64 (15.2.0-12ubuntu1) ... 1708s Selecting previously unselected package libgomp1:amd64. 1708s Preparing to unpack .../012-libgomp1_15.2.0-12ubuntu1_amd64.deb ... 1708s Unpacking libgomp1:amd64 (15.2.0-12ubuntu1) ... 1708s Selecting previously unselected package libitm1:amd64. 1708s Preparing to unpack .../013-libitm1_15.2.0-12ubuntu1_amd64.deb ... 1708s Unpacking libitm1:amd64 (15.2.0-12ubuntu1) ... 1708s Selecting previously unselected package libasan8:amd64. 1708s Preparing to unpack .../014-libasan8_15.2.0-12ubuntu1_amd64.deb ... 1708s Unpacking libasan8:amd64 (15.2.0-12ubuntu1) ... 1708s Selecting previously unselected package liblsan0:amd64. 1708s Preparing to unpack .../015-liblsan0_15.2.0-12ubuntu1_amd64.deb ... 1708s Unpacking liblsan0:amd64 (15.2.0-12ubuntu1) ... 1708s Selecting previously unselected package libtsan2:amd64. 1708s Preparing to unpack .../016-libtsan2_15.2.0-12ubuntu1_amd64.deb ... 1708s Unpacking libtsan2:amd64 (15.2.0-12ubuntu1) ... 1708s Selecting previously unselected package libubsan1:amd64. 1708s Preparing to unpack .../017-libubsan1_15.2.0-12ubuntu1_amd64.deb ... 1708s Unpacking libubsan1:amd64 (15.2.0-12ubuntu1) ... 1708s Selecting previously unselected package 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g++-x86-64-linux-gnu. 1709s Preparing to unpack .../028-g++-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ... 1709s Unpacking g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ... 1709s Selecting previously unselected package g++. 1709s Preparing to unpack .../029-g++_4%3a15.2.0-4ubuntu1_amd64.deb ... 1709s Unpacking g++ (4:15.2.0-4ubuntu1) ... 1709s Selecting previously unselected package build-essential. 1709s Preparing to unpack .../030-build-essential_12.12ubuntu2_amd64.deb ... 1709s Unpacking build-essential (12.12ubuntu2) ... 1709s Selecting previously unselected package dctrl-tools. 1709s Preparing to unpack .../031-dctrl-tools_2.24-3build4_amd64.deb ... 1709s Unpacking dctrl-tools (2.24-3build4) ... 1709s Selecting previously unselected package fonts-dejavu-mono. 1709s Preparing to unpack .../032-fonts-dejavu-mono_2.37-8build1_all.deb ... 1709s Unpacking fonts-dejavu-mono (2.37-8build1) ... 1709s Selecting previously unselected package fonts-dejavu-core. 1709s Preparing to unpack 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previously unselected package libxcb-render0:amd64. 1711s Preparing to unpack .../058-libxcb-render0_1.17.0-2ubuntu1_amd64.deb ... 1711s Unpacking libxcb-render0:amd64 (1.17.0-2ubuntu1) ... 1711s Selecting previously unselected package libxcb-shm0:amd64. 1711s Preparing to unpack .../059-libxcb-shm0_1.17.0-2ubuntu1_amd64.deb ... 1711s Unpacking libxcb-shm0:amd64 (1.17.0-2ubuntu1) ... 1711s Selecting previously unselected package libxrender1:amd64. 1711s Preparing to unpack .../060-libxrender1_1%3a0.9.12-1_amd64.deb ... 1711s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 1711s Selecting previously unselected package libcairo2:amd64. 1711s Preparing to unpack .../061-libcairo2_1.18.4-3_amd64.deb ... 1711s Unpacking libcairo2:amd64 (1.18.4-3) ... 1711s Selecting previously unselected package libdatrie1:amd64. 1711s Preparing to unpack .../062-libdatrie1_0.2.14-1_amd64.deb ... 1711s Unpacking libdatrie1:amd64 (0.2.14-1) ... 1711s Selecting previously unselected package libdeflate0:amd64. 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(2.2.5-0.3build1) ... 1712s Selecting previously unselected package libpcre2-16-0:amd64. 1712s Preparing to unpack .../104-libpcre2-16-0_10.46-1_amd64.deb ... 1712s Unpacking libpcre2-16-0:amd64 (10.46-1) ... 1712s Selecting previously unselected package libpcre2-32-0:amd64. 1712s Preparing to unpack .../105-libpcre2-32-0_10.46-1_amd64.deb ... 1712s Unpacking libpcre2-32-0:amd64 (10.46-1) ... 1712s Selecting previously unselected package libpcre2-posix3:amd64. 1712s Preparing to unpack .../106-libpcre2-posix3_10.46-1_amd64.deb ... 1712s Unpacking libpcre2-posix3:amd64 (10.46-1) ... 1712s Selecting previously unselected package libpcre2-dev:amd64. 1712s Preparing to unpack .../107-libpcre2-dev_10.46-1_amd64.deb ... 1712s Unpacking libpcre2-dev:amd64 (10.46-1) ... 1712s Selecting previously unselected package libpkgconf3:amd64. 1712s Preparing to unpack .../108-libpkgconf3_1.8.1-4build1_amd64.deb ... 1712s Unpacking libpkgconf3:amd64 (1.8.1-4build1) ... 1712s Selecting previously unselected package zlib1g-dev:amd64. 1712s Preparing to unpack .../109-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ... 1712s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ... 1712s Selecting previously unselected package libpng-dev:amd64. 1712s Preparing to unpack .../110-libpng-dev_1.6.54-1_amd64.deb ... 1712s Unpacking libpng-dev:amd64 (1.6.54-1) ... 1712s Selecting previously unselected package libpotrace0:amd64. 1712s Preparing to unpack .../111-libpotrace0_1.16-2build2_amd64.deb ... 1712s Unpacking libpotrace0:amd64 (1.16-2build2) ... 1712s Selecting previously unselected package libptexenc1:amd64. 1712s Preparing to unpack .../112-libptexenc1_2025.20250727.75242+ds-5build1_amd64.deb ... 1712s Unpacking libptexenc1:amd64 (2025.20250727.75242+ds-5build1) ... 1712s Selecting previously unselected package libreadline-dev:amd64. 1712s Preparing to unpack .../113-libreadline-dev_8.3-3_amd64.deb ... 1712s Unpacking libreadline-dev:amd64 (8.3-3) ... 1712s Selecting previously unselected package libsharpyuv0:amd64. 1712s Preparing to unpack .../114-libsharpyuv0_1.5.0-0.1build1_amd64.deb ... 1712s Unpacking libsharpyuv0:amd64 (1.5.0-0.1build1) ... 1712s Selecting previously unselected package libsm6:amd64. 1712s Preparing to unpack .../115-libsm6_2%3a1.2.6-1build1_amd64.deb ... 1712s Unpacking libsm6:amd64 (2:1.2.6-1build1) ... 1712s Selecting previously unselected package libsynctex2:amd64. 1712s Preparing to unpack .../116-libsynctex2_2025.20250727.75242+ds-5build1_amd64.deb ... 1712s Unpacking libsynctex2:amd64 (2025.20250727.75242+ds-5build1) ... 1712s Selecting previously unselected package libtcl8.6:amd64. 1712s Preparing to unpack .../117-libtcl8.6_8.6.17+dfsg-1build1_amd64.deb ... 1712s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1build1) ... 1712s Selecting previously unselected package libteckit0:amd64. 1712s Preparing to unpack .../118-libteckit0_2.5.13+ds-1_amd64.deb ... 1712s Unpacking libteckit0:amd64 (2.5.13+ds-1) ... 1712s Selecting previously unselected package libtexlua53-5:amd64. 1712s Preparing to unpack .../119-libtexlua53-5_2025.20250727.75242+ds-5build1_amd64.deb ... 1712s Unpacking libtexlua53-5:amd64 (2025.20250727.75242+ds-5build1) ... 1712s Selecting previously unselected package libjbig0:amd64. 1712s Preparing to unpack .../120-libjbig0_2.1-6.1ubuntu3_amd64.deb ... 1712s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ... 1712s Selecting previously unselected package libwebp7:amd64. 1712s Preparing to unpack .../121-libwebp7_1.5.0-0.1build1_amd64.deb ... 1712s Unpacking libwebp7:amd64 (1.5.0-0.1build1) ... 1712s Selecting previously unselected package libtiff6:amd64. 1712s Preparing to unpack .../122-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 1712s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 1712s Selecting previously unselected package libxft2:amd64. 1712s Preparing to unpack .../123-libxft2_2.3.6-1build2_amd64.deb ... 1712s Unpacking libxft2:amd64 (2.3.6-1build2) ... 1712s Selecting previously unselected package libxss1:amd64. 1712s Preparing to unpack .../124-libxss1_1%3a1.2.3-1build4_amd64.deb ... 1712s Unpacking libxss1:amd64 (1:1.2.3-1build4) ... 1712s Selecting previously unselected package libtk8.6:amd64. 1712s Preparing to unpack .../125-libtk8.6_8.6.17-1_amd64.deb ... 1712s Unpacking libtk8.6:amd64 (8.6.17-1) ... 1712s Selecting previously unselected package libxt6t64:amd64. 1712s Preparing to unpack .../126-libxt6t64_1%3a1.2.1-1.3_amd64.deb ... 1712s Unpacking libxt6t64:amd64 (1:1.2.1-1.3) ... 1712s Selecting previously unselected package libxmu6:amd64. 1712s Preparing to unpack .../127-libxmu6_2%3a1.1.3-4_amd64.deb ... 1712s Unpacking libxmu6:amd64 (2:1.1.3-4) ... 1712s Selecting previously unselected package libxpm4:amd64. 1712s Preparing to unpack .../128-libxpm4_1%3a3.5.17-1build3_amd64.deb ... 1712s Unpacking libxpm4:amd64 (1:3.5.17-1build3) ... 1712s Selecting previously unselected package libxaw7:amd64. 1712s Preparing to unpack .../129-libxaw7_2%3a1.0.16-1build1_amd64.deb ... 1712s Unpacking libxaw7:amd64 (2:1.0.16-1build1) ... 1712s Selecting previously unselected package libxi6:amd64. 1712s Preparing to unpack .../130-libxi6_2%3a1.8.2-2_amd64.deb ... 1712s Unpacking libxi6:amd64 (2:1.8.2-2) ... 1712s Selecting previously unselected package libzstd-dev:amd64. 1712s Preparing to unpack .../131-libzstd-dev_1.5.7+dfsg-3_amd64.deb ... 1712s Unpacking libzstd-dev:amd64 (1.5.7+dfsg-3) ... 1712s Selecting previously unselected package libzzip-0-13t64:amd64. 1712s Preparing to unpack .../132-libzzip-0-13t64_0.13.78+dfsg.1-0.2_amd64.deb ... 1712s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.2) ... 1712s Selecting previously unselected package node-bootstrap-sass. 1712s Preparing to unpack .../133-node-bootstrap-sass_3.4.3-2_all.deb ... 1712s Unpacking node-bootstrap-sass (3.4.3-2) ... 1712s Selecting previously unselected package node-html5shiv. 1712s Preparing to unpack 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package xdg-utils. 1713s Preparing to unpack .../140-xdg-utils_1.2.1-2ubuntu2_all.deb ... 1713s Unpacking xdg-utils (1.2.1-2ubuntu2) ... 1713s Selecting previously unselected package r-base-core. 1713s Preparing to unpack .../141-r-base-core_4.5.2-1ubuntu2_amd64.deb ... 1713s Unpacking r-base-core (4.5.2-1ubuntu2) ... 1713s Selecting previously unselected package liblzma-dev:amd64. 1713s Preparing to unpack .../142-liblzma-dev_5.8.2-2_amd64.deb ... 1713s Unpacking liblzma-dev:amd64 (5.8.2-2) ... 1713s Selecting previously unselected package pkgconf-bin. 1713s Preparing to unpack .../143-pkgconf-bin_1.8.1-4build1_amd64.deb ... 1713s Unpacking pkgconf-bin (1.8.1-4build1) ... 1713s Selecting previously unselected package pkgconf:amd64. 1713s Preparing to unpack .../144-pkgconf_1.8.1-4build1_amd64.deb ... 1713s Unpacking pkgconf:amd64 (1.8.1-4build1) ... 1713s Selecting previously unselected package libtirpc-dev:amd64. 1713s Preparing to unpack .../145-libtirpc-dev_1.3.6+ds-1_amd64.deb ... 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Selecting previously unselected package r-bioc-iranges. 1713s Preparing to unpack .../151-r-bioc-iranges_2.40.1-3_amd64.deb ... 1713s Unpacking r-bioc-iranges (2.40.1-3) ... 1713s Selecting previously unselected package r-cran-dbi. 1713s Preparing to unpack .../152-r-cran-dbi_1.2.3-1build1_all.deb ... 1713s Unpacking r-cran-dbi (1.2.3-1build1) ... 1713s Selecting previously unselected package r-cran-bit. 1713s Preparing to unpack .../153-r-cran-bit_4.6.0+dfsg-1_amd64.deb ... 1713s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 1713s Selecting previously unselected package r-cran-bit64. 1713s Preparing to unpack .../154-r-cran-bit64_4.6.0-1-4_amd64.deb ... 1713s Unpacking r-cran-bit64 (4.6.0-1-4) ... 1713s Selecting previously unselected package r-cran-rlang. 1713s Preparing to unpack .../155-r-cran-rlang_1.1.5-3_amd64.deb ... 1713s Unpacking r-cran-rlang (1.1.5-3) ... 1713s Selecting previously unselected package r-cran-cli. 1713s Preparing to unpack .../156-r-cran-cli_3.6.4-1_amd64.deb ... 1713s Unpacking r-cran-cli (3.6.4-1) ... 1713s Selecting previously unselected package r-cran-glue. 1713s Preparing to unpack .../157-r-cran-glue_1.8.0-1_amd64.deb ... 1713s Unpacking r-cran-glue (1.8.0-1) ... 1713s Selecting previously unselected package r-cran-lifecycle. 1713s Preparing to unpack .../158-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ... 1713s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ... 1713s Selecting previously unselected package r-cran-vctrs. 1713s Preparing to unpack .../159-r-cran-vctrs_0.6.5-1_amd64.deb ... 1713s Unpacking r-cran-vctrs (0.6.5-1) ... 1713s Selecting previously unselected package r-cran-blob. 1713s Preparing to unpack .../160-r-cran-blob_1.3.0-1_all.deb ... 1713s Unpacking r-cran-blob (1.3.0-1) ... 1713s Selecting previously unselected package r-cran-fastmap. 1713s Preparing to unpack .../161-r-cran-fastmap_1.2.0-1_amd64.deb ... 1713s Unpacking r-cran-fastmap (1.2.0-1) ... 1713s Selecting previously unselected package r-cran-cachem. 1713s Preparing to unpack .../162-r-cran-cachem_1.1.0-1_amd64.deb ... 1713s Unpacking r-cran-cachem (1.1.0-1) ... 1713s Selecting previously unselected package r-cran-memoise. 1713s Preparing to unpack .../163-r-cran-memoise_2.0.1-1build1_all.deb ... 1713s Unpacking r-cran-memoise (2.0.1-1build1) ... 1713s Selecting previously unselected package r-cran-pkgconfig. 1713s Preparing to unpack .../164-r-cran-pkgconfig_2.0.3-2build2_all.deb ... 1713s Unpacking r-cran-pkgconfig (2.0.3-2build2) ... 1713s Selecting previously unselected package r-cran-plogr. 1713s Preparing to unpack .../165-r-cran-plogr_0.2.0-3build2_all.deb ... 1713s Unpacking r-cran-plogr (0.2.0-3build2) ... 1713s Selecting previously unselected package r-cran-cpp11. 1713s Preparing to unpack .../166-r-cran-cpp11_0.5.3-1_all.deb ... 1713s Unpacking r-cran-cpp11 (0.5.3-1) ... 1713s Selecting previously unselected package r-cran-rsqlite. 1713s Preparing to unpack .../167-r-cran-rsqlite_2.3.9-1_amd64.deb ... 1713s Unpacking r-cran-rsqlite 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Selecting previously unselected package r-bioc-ucsc.utils. 1714s Preparing to unpack .../179-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 1714s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 1714s Selecting previously unselected package r-bioc-genomeinfodbdata. 1714s Preparing to unpack .../180-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 1714s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 1714s Selecting previously unselected package r-bioc-genomeinfodb. 1714s Preparing to unpack .../181-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 1714s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 1714s Selecting previously unselected package r-cran-crayon. 1714s Preparing to unpack .../182-r-cran-crayon_1.5.3-1_all.deb ... 1714s Unpacking r-cran-crayon (1.5.3-1) ... 1714s Selecting previously unselected package r-bioc-biostrings. 1714s Preparing to unpack .../183-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 1714s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 1714s Selecting previously unselected package r-bioc-keggrest. 1714s Preparing to unpack .../184-r-bioc-keggrest_1.46.0+dfsg-3_all.deb ... 1714s Unpacking r-bioc-keggrest (1.46.0+dfsg-3) ... 1714s Selecting previously unselected package r-bioc-annotationdbi. 1714s Preparing to unpack .../185-r-bioc-annotationdbi_1.68.0-2_all.deb ... 1714s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 1714s Selecting previously unselected package r-bioc-genomicranges. 1714s Preparing to unpack .../186-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ... 1714s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 1714s Selecting previously unselected package r-cran-lazyeval. 1714s Preparing to unpack .../187-r-cran-lazyeval_0.2.2-1build2_amd64.deb ... 1714s Unpacking r-cran-lazyeval (0.2.2-1build2) ... 1714s Selecting previously unselected package r-bioc-annotationfilter. 1714s Preparing to unpack .../188-r-bioc-annotationfilter_1.30.0+dfsg-2_all.deb ... 1714s Unpacking r-bioc-annotationfilter (1.30.0+dfsg-2) ... 1714s Selecting previously unselected package r-cran-generics. 1714s Preparing to unpack .../189-r-cran-generics_0.1.4-1_all.deb ... 1714s Unpacking r-cran-generics (0.1.4-1) ... 1714s Selecting previously unselected package r-cran-magrittr. 1714s Preparing to unpack .../190-r-cran-magrittr_2.0.3-1_amd64.deb ... 1714s Unpacking r-cran-magrittr (2.0.3-1) ... 1714s Selecting previously unselected package r-cran-utf8. 1714s Preparing to unpack .../191-r-cran-utf8_1.2.4-1_amd64.deb ... 1714s Unpacking r-cran-utf8 (1.2.4-1) ... 1714s Selecting previously unselected package r-cran-pillar. 1714s Preparing to unpack .../192-r-cran-pillar_1.11.1+dfsg-1_all.deb ... 1714s Unpacking r-cran-pillar (1.11.1+dfsg-1) ... 1714s Selecting previously unselected package r-cran-fansi. 1714s Preparing to unpack .../193-r-cran-fansi_1.0.6-2_amd64.deb ... 1714s Unpacking r-cran-fansi (1.0.6-2) ... 1714s Selecting previously unselected package r-cran-tibble. 1714s Preparing to unpack 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(1.8.4-1build2) ... 1714s Selecting previously unselected package r-cran-stringr. 1714s Preparing to unpack .../200-r-cran-stringr_1.5.1-1_all.deb ... 1714s Unpacking r-cran-stringr (1.5.1-1) ... 1714s Selecting previously unselected package r-cran-tidyr. 1714s Preparing to unpack .../201-r-cran-tidyr_1.3.1-1_amd64.deb ... 1714s Unpacking r-cran-tidyr (1.3.1-1) ... 1714s Selecting previously unselected package r-cran-dbplyr. 1714s Preparing to unpack .../202-r-cran-dbplyr_2.5.1+dfsg-1_all.deb ... 1714s Unpacking r-cran-dbplyr (2.5.1+dfsg-1) ... 1714s Selecting previously unselected package r-cran-filelock. 1714s Preparing to unpack .../203-r-cran-filelock_1.0.3-1_amd64.deb ... 1714s Unpacking r-cran-filelock (1.0.3-1) ... 1714s Selecting previously unselected package r-bioc-biocfilecache. 1714s Preparing to unpack .../204-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ... 1714s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ... 1714s Selecting previously unselected package r-bioc-biocio. 1714s Preparing to unpack .../205-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 1714s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 1714s Selecting previously unselected package r-cran-formatr. 1714s Preparing to unpack .../206-r-cran-formatr_1.14-2_all.deb ... 1714s Unpacking r-cran-formatr (1.14-2) ... 1714s Selecting previously unselected package r-cran-lambda.r. 1714s Preparing to unpack .../207-r-cran-lambda.r_1.2.4-2build2_all.deb ... 1714s Unpacking r-cran-lambda.r (1.2.4-2build2) ... 1714s Selecting previously unselected package r-cran-futile.options. 1714s Preparing to unpack .../208-r-cran-futile.options_1.0.1-3build2_all.deb ... 1714s Unpacking r-cran-futile.options (1.0.1-3build2) ... 1714s Selecting previously unselected package r-cran-futile.logger. 1714s Preparing to unpack .../209-r-cran-futile.logger_1.4.3-4build2_all.deb ... 1714s Unpacking r-cran-futile.logger (1.4.3-4build2) ... 1714s Selecting previously unselected package r-cran-snow. 1714s Preparing to unpack .../210-r-cran-snow_1%3a0.4.4-2build1_all.deb ... 1714s Unpacking r-cran-snow (1:0.4.4-2build1) ... 1714s Selecting previously unselected package r-cran-codetools. 1714s Preparing to unpack .../211-r-cran-codetools_0.2-20-1build1_all.deb ... 1714s Unpacking r-cran-codetools (0.2-20-1build1) ... 1714s Selecting previously unselected package r-cran-bh. 1714s Preparing to unpack .../212-r-cran-bh_1.84.0-1_all.deb ... 1714s Unpacking r-cran-bh (1.84.0-1) ... 1714s Selecting previously unselected package r-bioc-biocparallel. 1714s Preparing to unpack .../213-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 1714s Unpacking r-bioc-biocparallel (1.40.0-2) ... 1714s Selecting previously unselected package r-cran-base64enc. 1714s Preparing to unpack .../214-r-cran-base64enc_0.1-3-3build1_amd64.deb ... 1714s Unpacking r-cran-base64enc (0.1-3-3build1) ... 1714s Selecting previously unselected package r-cran-digest. 1714s Preparing to unpack .../215-r-cran-digest_0.6.39-1_amd64.deb ... 1714s Unpacking r-cran-digest (0.6.39-1) ... 1714s Selecting previously unselected package r-cran-htmltools. 1714s Preparing to unpack .../216-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 1714s Unpacking r-cran-htmltools (0.5.8.1-1) ... 1714s Selecting previously unselected package r-cran-evaluate. 1714s Preparing to unpack .../217-r-cran-evaluate_1.0.5-1_all.deb ... 1714s Unpacking r-cran-evaluate (1.0.5-1) ... 1714s Selecting previously unselected package r-cran-xfun. 1714s Preparing to unpack .../218-r-cran-xfun_0.55+dfsg-1_amd64.deb ... 1714s Unpacking r-cran-xfun (0.55+dfsg-1) ... 1714s Selecting previously unselected package r-cran-highr. 1714s Preparing to unpack .../219-r-cran-highr_0.11+dfsg-1_all.deb ... 1714s Unpacking r-cran-highr (0.11+dfsg-1) ... 1714s Selecting previously unselected package r-cran-yaml. 1714s Preparing to unpack .../220-r-cran-yaml_2.3.10-1_amd64.deb ... 1714s Unpacking r-cran-yaml (2.3.10-1) ... 1714s Selecting previously unselected package libjs-mathjax. 1714s Preparing to unpack .../221-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ... 1714s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ... 1715s Selecting previously unselected package r-cran-knitr. 1715s Preparing to unpack .../222-r-cran-knitr_1.51+dfsg-1_all.deb ... 1715s Unpacking r-cran-knitr (1.51+dfsg-1) ... 1715s Selecting previously unselected package r-cran-jquerylib. 1715s Preparing to unpack .../223-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ... 1715s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ... 1715s Selecting previously unselected package r-cran-fs. 1715s Preparing to unpack .../224-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 1715s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 1715s Selecting previously unselected package r-cran-rappdirs. 1715s Preparing to unpack .../225-r-cran-rappdirs_0.3.3-1build1_amd64.deb ... 1715s Unpacking r-cran-rappdirs (0.3.3-1build1) ... 1715s Selecting previously unselected package r-cran-sass. 1715s Preparing to unpack .../226-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 1715s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 1715s Selecting previously unselected package r-cran-bslib. 1715s Preparing to unpack .../227-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ... 1715s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ... 1715s Selecting previously unselected package r-cran-fontawesome. 1715s Preparing to unpack .../228-r-cran-fontawesome_0.5.3-1_all.deb ... 1715s Unpacking r-cran-fontawesome (0.5.3-1) ... 1715s Selecting previously unselected package r-cran-tinytex. 1715s Preparing to unpack .../229-r-cran-tinytex_0.58-1_all.deb ... 1715s Unpacking r-cran-tinytex (0.58-1) ... 1715s Selecting previously unselected package libjs-modernizr. 1715s Preparing to unpack .../230-libjs-modernizr_3.13.0-0.1build1_all.deb ... 1715s Unpacking libjs-modernizr (3.13.0-0.1build1) ... 1715s Selecting previously unselected package r-cran-littler. 1715s Preparing to unpack .../231-r-cran-littler_0.3.22-1_amd64.deb ... 1715s Unpacking r-cran-littler (0.3.22-1) ... 1715s Selecting previously unselected package r-cran-pkgkitten. 1715s Preparing to unpack .../232-r-cran-pkgkitten_0.2.4-1_all.deb ... 1715s Unpacking r-cran-pkgkitten (0.2.4-1) ... 1715s Selecting previously unselected package r-cran-rcpp. 1715s Preparing to unpack .../233-r-cran-rcpp_1.1.0-1_amd64.deb ... 1715s Unpacking r-cran-rcpp (1.1.0-1) ... 1715s Selecting previously unselected package r-cran-later. 1715s Preparing to unpack .../234-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 1715s Unpacking r-cran-later (1.4.1+dfsg-1) ... 1715s Selecting previously unselected package r-cran-promises. 1715s Preparing to unpack .../235-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 1715s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 1715s Selecting previously unselected package r-cran-httpuv. 1715s Preparing to unpack .../236-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 1715s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 1715s Selecting previously unselected package r-cran-xtable. 1715s Preparing to unpack .../237-r-cran-xtable_1%3a1.8-4-2build1_all.deb ... 1715s Unpacking r-cran-xtable (1:1.8-4-2build1) ... 1715s Selecting previously unselected package r-cran-sourcetools. 1715s Preparing to unpack .../238-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 1715s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 1715s Selecting previously unselected package r-cran-commonmark. 1715s Preparing to unpack .../239-r-cran-commonmark_1.9.5-1_amd64.deb ... 1715s Unpacking r-cran-commonmark (1.9.5-1) ... 1715s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 1715s Preparing to unpack .../240-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 1715s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 1715s Selecting previously unselected package r-cran-shiny. 1715s Preparing to unpack .../241-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 1715s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 1715s Selecting previously unselected package r-cran-rmarkdown. 1715s Preparing to unpack .../242-r-cran-rmarkdown_2.30+dfsg-1_all.deb ... 1715s Unpacking r-cran-rmarkdown (2.30+dfsg-1) ... 1715s Selecting previously unselected package r-cran-bookdown. 1715s Preparing to unpack .../243-r-cran-bookdown_0.42+dfsg-1_all.deb ... 1715s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 1715s Selecting previously unselected package r-cran-biocmanager. 1715s Preparing to unpack .../244-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 1715s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 1715s Selecting previously unselected package tex-common. 1715s Preparing to unpack .../245-tex-common_6.20_all.deb ... 1715s Unpacking tex-common (6.20) ... 1715s Selecting previously unselected package t1utils. 1715s Preparing to unpack .../246-t1utils_1.41-4build4_amd64.deb ... 1715s Unpacking t1utils (1.41-4build4) ... 1715s Selecting previously unselected package texlive-binaries. 1715s Preparing to unpack .../247-texlive-binaries_2025.20250727.75242+ds-5build1_amd64.deb ... 1715s Unpacking texlive-binaries (2025.20250727.75242+ds-5build1) ... 1715s Selecting previously unselected package texlive-base. 1715s Preparing to unpack .../248-texlive-base_2025.20260124-1_all.deb ... 1715s Unpacking texlive-base (2025.20260124-1) ... 1716s Selecting previously unselected package texlive-latex-base. 1716s Preparing to unpack .../249-texlive-latex-base_2025.20260124-1_all.deb ... 1716s Unpacking texlive-latex-base (2025.20260124-1) ... 1716s Selecting previously unselected package texlive-bibtex-extra. 1716s Preparing to unpack .../250-texlive-bibtex-extra_2025.20260124-1_all.deb ... 1716s Unpacking texlive-bibtex-extra (2025.20260124-1) ... 1717s Selecting previously unselected package r-bioc-biocversion. 1717s Preparing to unpack .../251-r-bioc-biocversion_3.20.0-2_all.deb ... 1717s Unpacking r-bioc-biocversion (3.20.0-2) ... 1717s Selecting previously unselected package r-bioc-biocstyle. 1717s Preparing to unpack .../252-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 1717s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 1717s Selecting previously unselected package r-cran-hms. 1717s Preparing to unpack .../253-r-cran-hms_1.1.4-1_all.deb ... 1717s Unpacking r-cran-hms (1.1.4-1) ... 1717s Selecting previously unselected package r-cran-prettyunits. 1717s Preparing to unpack .../254-r-cran-prettyunits_1.2.0-1_all.deb ... 1717s Unpacking r-cran-prettyunits (1.2.0-1) ... 1717s Selecting previously unselected package r-cran-progress. 1717s Preparing to unpack .../255-r-cran-progress_1.2.3-1_all.deb ... 1717s Unpacking r-cran-progress (1.2.3-1) ... 1717s Selecting previously unselected package r-cran-httr2. 1717s Preparing to unpack .../256-r-cran-httr2_1.1.1-2_all.deb ... 1717s Unpacking r-cran-httr2 (1.1.1-2) ... 1717s Selecting previously unselected package r-cran-xml2. 1717s Preparing to unpack .../257-r-cran-xml2_1.4.1-1_amd64.deb ... 1717s Unpacking r-cran-xml2 (1.4.1-1) ... 1717s Selecting previously unselected package r-bioc-biomart. 1717s Preparing to unpack .../258-r-bioc-biomart_2.62.1+dfsg-1_all.deb ... 1717s Unpacking r-bioc-biomart (2.62.1+dfsg-1) ... 1717s Selecting previously unselected package r-cran-farver. 1717s Preparing to unpack .../259-r-cran-farver_2.1.2-1_amd64.deb ... 1717s Unpacking r-cran-farver (2.1.2-1) ... 1717s Selecting previously unselected package r-cran-labeling. 1717s Preparing to unpack .../260-r-cran-labeling_0.4.3-1_all.deb ... 1717s Unpacking r-cran-labeling (0.4.3-1) ... 1717s Selecting previously unselected package r-cran-rcolorbrewer. 1717s Preparing to unpack .../261-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ... 1717s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ... 1717s Selecting previously unselected package r-cran-viridislite. 1717s Preparing to unpack .../262-r-cran-viridislite_0.4.3-1_all.deb ... 1717s Unpacking r-cran-viridislite (0.4.3-1) ... 1717s Selecting previously unselected package r-cran-scales. 1717s Preparing to unpack .../263-r-cran-scales_1.4.0-1_all.deb ... 1717s Unpacking r-cran-scales (1.4.0-1) ... 1717s Selecting previously unselected package r-cran-gtable. 1717s Preparing to unpack .../264-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 1717s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 1717s Selecting previously unselected package r-cran-isoband. 1717s Preparing to unpack .../265-r-cran-isoband_0.2.7-1_amd64.deb ... 1717s Unpacking r-cran-isoband (0.2.7-1) ... 1717s Selecting previously unselected package r-cran-mass. 1717s Preparing to unpack .../266-r-cran-mass_7.3-65-1_amd64.deb ... 1717s Unpacking r-cran-mass (7.3-65-1) ... 1717s Selecting previously unselected package r-cran-lattice. 1717s Preparing to unpack .../267-r-cran-lattice_0.22-9-1_amd64.deb ... 1717s Unpacking r-cran-lattice (0.22-9-1) ... 1717s Selecting previously unselected package r-cran-nlme. 1717s Preparing to unpack .../268-r-cran-nlme_3.1.168-1_amd64.deb ... 1717s Unpacking r-cran-nlme (3.1.168-1) ... 1717s Selecting previously unselected package r-cran-matrix. 1717s Preparing to unpack .../269-r-cran-matrix_1.7-4-1_amd64.deb ... 1717s Unpacking r-cran-matrix (1.7-4-1) ... 1717s Selecting previously unselected package r-cran-mgcv. 1717s Preparing to unpack .../270-r-cran-mgcv_1.9-4-1_amd64.deb ... 1717s Unpacking r-cran-mgcv (1.9-4-1) ... 1717s Selecting previously unselected package r-cran-ggplot2. 1717s Preparing to unpack .../271-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 1717s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 1718s Selecting previously unselected package r-cran-cluster. 1718s Preparing to unpack .../272-r-cran-cluster_2.1.8.2-1_amd64.deb ... 1718s Unpacking r-cran-cluster (2.1.8.2-1) ... 1718s Selecting previously unselected package r-cran-survival. 1718s Preparing to unpack .../273-r-cran-survival_3.8-6-1_amd64.deb ... 1718s Unpacking r-cran-survival (3.8-6-1) ... 1718s Selecting previously unselected package r-cran-rpart. 1718s Preparing to unpack .../274-r-cran-rpart_4.1.24-1build1_amd64.deb ... 1718s Unpacking r-cran-rpart (4.1.24-1build1) ... 1718s Selecting previously unselected package r-cran-nnet. 1718s Preparing to unpack .../275-r-cran-nnet_7.3-20-1_amd64.deb ... 1718s Unpacking r-cran-nnet (7.3-20-1) ... 1718s Selecting previously unselected package r-cran-foreign. 1718s Preparing to unpack .../276-r-cran-foreign_0.8.91-1_amd64.deb ... 1718s Unpacking r-cran-foreign (0.8.91-1) ... 1718s Selecting previously unselected package r-cran-gridextra. 1718s Preparing to unpack .../277-r-cran-gridextra_2.3-3build2_all.deb ... 1718s Unpacking r-cran-gridextra (2.3-3build2) ... 1718s Selecting previously unselected package r-cran-data.table. 1718s Preparing to unpack .../278-r-cran-data.table_1.17.0+dfsg-1_amd64.deb ... 1718s Unpacking r-cran-data.table (1.17.0+dfsg-1) ... 1718s Selecting previously unselected package r-cran-backports. 1718s Preparing to unpack .../279-r-cran-backports_1.5.0-2_amd64.deb ... 1718s Unpacking r-cran-backports (1.5.0-2) ... 1718s Selecting previously unselected package r-cran-checkmate. 1718s Preparing to unpack .../280-r-cran-checkmate_2.3.2-1_amd64.deb ... 1718s Unpacking r-cran-checkmate (2.3.2-1) ... 1718s Selecting previously unselected package r-cran-htmlwidgets. 1718s Preparing to unpack .../281-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 1718s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 1718s Selecting previously unselected package r-cran-rstudioapi. 1718s Preparing to unpack .../282-r-cran-rstudioapi_0.18.0-1_all.deb ... 1718s Unpacking r-cran-rstudioapi (0.18.0-1) ... 1718s Selecting previously unselected package r-cran-htmltable. 1718s Preparing to unpack .../283-r-cran-htmltable_2.4.3-1_all.deb ... 1718s Unpacking r-cran-htmltable (2.4.3-1) ... 1718s Selecting previously unselected package r-cran-colorspace. 1718s Preparing to unpack .../284-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ... 1718s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 1718s Selecting previously unselected package r-cran-formula. 1718s Preparing to unpack .../285-r-cran-formula_1.2-5-1_all.deb ... 1718s Unpacking r-cran-formula (1.2-5-1) ... 1718s Selecting previously unselected package r-cran-chron. 1718s Preparing to unpack .../286-r-cran-chron_2.3-62-1_amd64.deb ... 1718s Unpacking r-cran-chron (2.3-62-1) ... 1718s Selecting previously unselected package r-cran-jpeg. 1718s Preparing to unpack .../287-r-cran-jpeg_0.1-10-1_amd64.deb ... 1718s Unpacking r-cran-jpeg (0.1-10-1) ... 1718s Selecting previously unselected package r-cran-deldir. 1718s Preparing to unpack .../288-r-cran-deldir_2.0-4-1build1_amd64.deb ... 1718s Unpacking r-cran-deldir (2.0-4-1build1) ... 1718s Selecting previously unselected package r-cran-rcppeigen. 1718s Preparing to unpack .../289-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 1718s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 1718s Selecting previously unselected package r-cran-interp. 1718s Preparing to unpack .../290-r-cran-interp_1.1-6-1_amd64.deb ... 1718s Unpacking r-cran-interp (1.1-6-1) ... 1718s Selecting previously unselected package r-cran-latticeextra. 1718s Preparing to unpack .../291-r-cran-latticeextra_0.6-31-1_all.deb ... 1718s Unpacking r-cran-latticeextra (0.6-31-1) ... 1718s Selecting previously unselected package r-cran-acepack. 1718s Preparing to unpack .../292-r-cran-acepack_1.6.3-1_amd64.deb ... 1718s Unpacking r-cran-acepack (1.6.3-1) ... 1718s Selecting previously unselected package r-cran-viridis. 1718s Preparing to unpack .../293-r-cran-viridis_0.6.5-1_all.deb ... 1718s Unpacking r-cran-viridis (0.6.5-1) ... 1718s Selecting previously unselected package r-cran-hmisc. 1718s Preparing to unpack .../294-r-cran-hmisc_5.2-5-2_amd64.deb ... 1718s Unpacking r-cran-hmisc (5.2-5-2) ... 1718s Selecting previously unselected package r-cran-dichromat. 1718s Preparing to unpack .../295-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 1718s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 1718s Selecting previously unselected package r-cran-matrixstats. 1718s Preparing to unpack .../296-r-cran-matrixstats_1.5.0-1_amd64.deb ... 1718s Unpacking r-cran-matrixstats (1.5.0-1) ... 1718s Selecting previously unselected package r-bioc-matrixgenerics. 1718s Preparing to unpack .../297-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 1718s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 1718s Selecting previously unselected package r-cran-abind. 1718s Preparing to unpack .../298-r-cran-abind_1.4-8-1build1_all.deb ... 1718s Unpacking r-cran-abind (1.4-8-1build1) ... 1718s Selecting previously unselected package r-bioc-s4arrays. 1718s Preparing to unpack .../299-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 1718s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 1718s Selecting previously unselected package r-bioc-sparsearray. 1718s Preparing to unpack .../300-r-bioc-sparsearray_1.6.2+dfsg-2_amd64.deb ... 1718s Unpacking r-bioc-sparsearray (1.6.2+dfsg-2) ... 1718s Selecting previously unselected package r-bioc-delayedarray. 1718s Preparing to unpack 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1723s Setting up r-cran-highr (0.11+dfsg-1) ... 1723s Setting up r-cran-prettyunits (1.2.0-1) ... 1723s Setting up r-cran-fansi (1.0.6-2) ... 1723s Setting up r-cran-mass (7.3-65-1) ... 1723s Setting up r-cran-checkmate (2.3.2-1) ... 1723s Setting up r-cran-acepack (1.6.3-1) ... 1723s Setting up r-cran-snow (1:0.4.4-2build1) ... 1723s Setting up r-cran-data.table (1.17.0+dfsg-1) ... 1723s Setting up r-cran-glue (1.8.0-1) ... 1723s Setting up r-cran-foreign (0.8.91-1) ... 1723s Setting up r-cran-bit (4.6.0+dfsg-1) ... 1723s Setting up r-cran-xtable (1:1.8-4-2build1) ... 1723s Setting up r-cran-cli (3.6.4-1) ... 1723s Setting up gfortran (4:15.2.0-4ubuntu1) ... 1723s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 1723s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 1723s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 1723s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 1723s Setting up r-cran-lifecycle (1.0.5+dfsg-1) ... 1723s Setting up r-cran-bitops (1.0-9-1) ... 1723s Setting up r-bioc-biocversion (3.20.0-2) ... 1723s Setting up r-cran-rprojroot (2.1.1-1) ... 1723s Setting up r-cran-bit64 (4.6.0-1-4) ... 1723s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 1723s Setting up r-cran-dichromat (1:2.0-0.1-1) ... 1723s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 1723s Setting up r-cran-deldir (2.0-4-1build1) ... 1723s Setting up r-cran-askpass (1.2.1-1) ... 1723s Setting up r-cran-fastmap (1.2.0-1) ... 1723s Setting up r-cran-png (0.1-8-1build2) ... 1723s Setting up r-bioc-biobase (2.66.0-2) ... 1723s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 1723s Setting up r-cran-rstudioapi (0.18.0-1) ... 1723s Setting up r-cran-pkgconfig (2.0.3-2build2) ... 1723s Setting up r-cran-utf8 (1.2.4-1) ... 1723s Setting up r-cran-colorspace (2.1-1+dfsg-1) ... 1723s Setting up r-cran-stringi (1.8.4-1build2) ... 1723s Setting up texlive-latex-base (2025.20260124-1) ... 1723s Setting up r-cran-cpp11 (0.5.3-1) ... 1723s Setting up r-cran-rcolorbrewer (1.1-3-1build2) ... 1723s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 1723s Setting up r-cran-isoband (0.2.7-1) ... 1723s Setting up r-cran-futile.logger (1.4.3-4build2) ... 1723s Setting up r-cran-waldo (0.6.2-1) ... 1723s Setting up r-cran-scales (1.4.0-1) ... 1723s Setting up r-cran-gtable (0.3.6+dfsg-1) ... 1723s Setting up r-cran-later (1.4.1+dfsg-1) ... 1723s Setting up r-cran-matrix (1.7-4-1) ... 1723s Setting up r-cran-htmltools (0.5.8.1-1) ... 1723s Setting up r-cran-tinytex (0.58-1) ... 1723s Setting up r-cran-knitr (1.51+dfsg-1) ... 1723s Setting up r-cran-mgcv (1.9-4-1) ... 1723s Setting up g++ (4:15.2.0-4ubuntu1) ... 1723s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 1723s Setting up r-cran-cachem (1.1.0-1) ... 1723s Setting up r-cran-sass (0.4.9+dfsg-1) ... 1723s Setting up build-essential (12.12ubuntu2) ... 1723s Setting up r-bioc-iranges (2.40.1-3) ... 1723s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... 1723s Setting up r-cran-restfulr (0.0.15-1) ... 1723s Setting up r-cran-vctrs (0.6.5-1) ... 1723s Setting up r-cran-rcppeigen (0.3.4.0.2-1) ... 1723s Setting up r-cran-pillar (1.11.1+dfsg-1) ... 1723s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 1723s Setting up r-base-dev (4.5.2-1ubuntu2) ... 1723s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ... 1723s Setting up r-cran-stringr (1.5.1-1) ... 1723s Setting up r-bioc-biocparallel (1.40.0-2) ... 1723s Setting up r-cran-callr (3.7.6-1) ... 1723s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ... 1723s Setting up r-cran-desc (1.4.3-1) ... 1723s Setting up r-cran-xml2 (1.4.1-1) ... 1723s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 1723s Setting up r-cran-fontawesome (0.5.3-1) ... 1723s Setting up r-cran-survival (3.8-6-1) ... 1723s Setting up r-bioc-biocio (1.16.0+dfsg-2) ... 1723s Setting up r-cran-jquerylib (0.1.4+dfsg-5) ... 1723s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 1723s Setting up texlive-bibtex-extra (2025.20260124-1) ... 1723s Setting up r-cran-interp (1.1-6-1) ... 1723s Setting up r-cran-httr2 (1.1.1-2) ... 1723s Setting up r-cran-httr (1.4.7+dfsg-1) ... 1723s Setting up r-cran-gridextra (2.3-3build2) ... 1723s Setting up r-cran-hms (1.1.4-1) ... 1723s Setting up r-cran-memoise (2.0.1-1build1) ... 1723s Setting up r-cran-promises (1.3.2+dfsg-1) ... 1723s Setting up r-cran-purrr (1.0.4-1) ... 1723s Setting up r-cran-blob (1.3.0-1) ... 1723s Setting up pkg-r-autopkgtest (20250812) ... 1723s Setting up r-bioc-xvector (0.46.0-2) ... 1723s Setting up r-cran-pkgbuild (1.4.8-1) ... 1723s Setting up r-cran-dplyr (1.1.4-4) ... 1723s Setting up r-cran-rsqlite (2.3.9-1) ... 1723s Setting up r-cran-progress (1.2.3-1) ... 1723s Setting up r-cran-pkgload (1.4.1-1) ... 1723s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 1723s Setting up r-bioc-sparsearray (1.6.2+dfsg-2) ... 1723s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 1723s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 1723s Setting up r-cran-rpart (4.1.24-1build1) ... 1723s Setting up r-cran-latticeextra (0.6-31-1) ... 1723s Setting up r-cran-viridis (0.6.5-1) ... 1723s Setting up r-cran-testthat (3.2.3-1) ... 1723s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 1723s Setting up r-cran-bslib (0.9.0+dfsg-3build1) ... 1723s Setting up r-cran-tidyr (1.3.1-1) ... 1723s Setting up r-cran-dbplyr (2.5.1+dfsg-1) ... 1723s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 1723s Setting up r-bioc-biocfilecache (2.14.0+dfsg-2) ... 1723s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 1723s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 1723s Setting up r-bioc-annotationfilter (1.30.0+dfsg-2) ... 1723s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 1723s Setting up r-cran-rmarkdown (2.30+dfsg-1) ... 1723s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 1723s Setting up r-cran-bookdown (0.42+dfsg-1) ... 1723s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 1723s Setting up r-bioc-keggrest (1.46.0+dfsg-3) ... 1723s Setting up r-bioc-annotationdbi (1.68.0-2) ... 1723s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 1723s Setting up r-bioc-biomart (2.62.1+dfsg-1) ... 1723s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 1723s Setting up r-bioc-genomicalignments (1.42.0-2) ... 1723s Setting up r-bioc-rtracklayer (1.66.0-3) ... 1723s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 1723s Setting up r-cran-htmltable (2.4.3-1) ... 1723s Setting up r-bioc-bsgenome (1.74.0-2) ... 1723s Setting up r-bioc-ensembldb (2.30.0+dfsg-3) ... 1723s Setting up r-cran-hmisc (5.2-5-2) ... 1723s Setting up r-bioc-variantannotation (1.52.0-2) ... 1723s Setting up r-bioc-biovizbase (1.54.0-2) ... 1723s Setting up r-bioc-gviz (1.50.0+dfsg-2) ... 1723s Processing triggers for libc-bin (2.42-2ubuntu4) ... 1723s Processing triggers for man-db (2.13.1-1build1) ... 1724s Processing triggers for install-info (7.2-5) ... 1724s Processing triggers for tex-common (6.20) ... 1724s Running updmap-sys. This may take some time... done. 1724s Running mktexlsr /var/lib/texmf ... done. 1724s Building format(s) --all. 1738s This may take some time... done. 1739s autopkgtest [23:53:10]: test environment configured for cross building 1739s autopkgtest [23:53:10]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 1739s autopkgtest [23:53:10]: test pkg-r-autopkgtest: [----------------------- 1739s Test: Try to load the R library Gviz 1740s 1740s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 1740s Copyright (C) 2025 The R Foundation for Statistical Computing 1740s Platform: x86_64-pc-linux-gnu 1740s 1740s R is free software and comes with ABSOLUTELY NO WARRANTY. 1740s You are welcome to redistribute it under certain conditions. 1740s Type 'license()' or 'licence()' for distribution details. 1740s 1740s R is a collaborative project with many contributors. 1740s Type 'contributors()' for more information and 1740s 'citation()' on how to cite R or R packages in publications. 1740s 1740s Type 'demo()' for some demos, 'help()' for on-line help, or 1740s 'help.start()' for an HTML browser interface to help. 1740s Type 'q()' to quit R. 1740s 1740s > library('Gviz') 1740s Loading required package: S4Vectors 1740s Loading required package: stats4 1740s Loading required package: BiocGenerics 1740s 1740s Attaching package: ‘BiocGenerics’ 1740s 1740s The following objects are masked from ‘package:stats’: 1740s 1740s IQR, mad, sd, var, xtabs 1740s 1740s The following objects are masked from ‘package:base’: 1740s 1740s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 1740s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 1740s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 1740s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 1740s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 1740s table, tapply, union, unique, unsplit, which.max, which.min 1740s 1740s 1740s Attaching package: ‘S4Vectors’ 1740s 1740s The following object is masked from ‘package:utils’: 1740s 1740s findMatches 1740s 1740s The following objects are masked from ‘package:base’: 1740s 1740s expand.grid, I, unname 1740s 1740s Loading required package: IRanges 1740s Loading required package: GenomicRanges 1740s Loading required package: GenomeInfoDb 1741s Loading required package: grid 1748s > 1749s Test: Run tests for Gviz 1749s Start: testthat.R 1749s 1749s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 1749s Copyright (C) 2025 The R Foundation for Statistical Computing 1749s Platform: x86_64-pc-linux-gnu 1749s 1749s R is free software and comes with ABSOLUTELY NO WARRANTY. 1749s You are welcome to redistribute it under certain conditions. 1749s Type 'license()' or 'licence()' for distribution details. 1749s 1749s R is a collaborative project with many contributors. 1749s Type 'contributors()' for more information and 1749s 'citation()' on how to cite R or R packages in publications. 1749s 1749s Type 'demo()' for some demos, 'help()' for on-line help, or 1749s 'help.start()' for an HTML browser interface to help. 1749s Type 'q()' to quit R. 1749s 1749s > library(testthat) 1749s > library(Gviz) 1749s Loading required package: S4Vectors 1749s Loading required package: stats4 1749s Loading required package: BiocGenerics 1749s 1749s Attaching package: ‘BiocGenerics’ 1749s 1749s The following objects are masked from ‘package:stats’: 1749s 1749s IQR, mad, sd, var, xtabs 1749s 1749s The following objects are masked from ‘package:base’: 1749s 1749s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 1749s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 1749s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 1749s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 1749s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 1749s table, tapply, union, unique, unsplit, which.max, which.min 1749s 1749s 1749s Attaching package: ‘S4Vectors’ 1749s 1749s The following object is masked from ‘package:utils’: 1749s 1749s findMatches 1749s 1749s The following objects are masked from ‘package:base’: 1749s 1749s expand.grid, I, unname 1749s 1749s Loading required package: IRanges 1749s Loading required package: GenomicRanges 1749s Loading required package: GenomeInfoDb 1750s Loading required package: grid 1758s > 1758s > test_check("Gviz") 1758s [1] "BSgenome.Hsapiens.UCSC.hg19 is not available!" 1758s Loading required package: BSgenome.Hsapiens.UCSC.hg19 1758s Warning message: 1758s In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : 1758s there is no package called 'BSgenome.Hsapiens.UCSC.hg19' 1758s autopkgtest [23:53:29]: test pkg-r-autopkgtest: -----------------------] 1758s pkg-r-autopkgtest PASS 1758s autopkgtest [23:53:29]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 1759s autopkgtest [23:53:30]: @@@@@@@@@@@@@@@@@@@@ summary 1759s pkg-r-autopkgtest PASS