0s autopkgtest [23:23:26]: starting date and time: 2026-02-09 23:23:26+0000
  0s autopkgtest [23:23:26]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op
  0s autopkgtest [23:23:26]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.v1w32pmw/out --timeout-copy=6000 --needs-internet=try -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:lattice --apt-upgrade r-bioc-geneplotter --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=lattice/0.22-9-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-14.secgroup --name adt-resolute-i386-r-bioc-geneplotter-20260209-232326-juju-7f2275-prod-proposed-migration-environment-20-e38fad86-6115-4033-aaf7-56b604365757 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
  3s Creating nova instance adt-resolute-i386-r-bioc-geneplotter-20260209-232326-juju-7f2275-prod-proposed-migration-environment-20-e38fad86-6115-4033-aaf7-56b604365757 from image adt/ubuntu-resolute-amd64-server-20260204.img (UUID fedf54b4-458b-493e-8072-6425c19717b4)...
156s autopkgtest [23:26:02]: testbed dpkg architecture: amd64
156s autopkgtest [23:26:02]: testbed apt version: 3.1.14
157s autopkgtest [23:26:03]: @@@@@@@@@@@@@@@@@@@@ test bed setup
157s autopkgtest [23:26:03]: testbed release detected to be: None
157s autopkgtest [23:26:03]: updating testbed package index (apt update)
158s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB]
158s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
158s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
158s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
158s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [176 kB]
158s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1645 kB]
160s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [29.4 kB]
160s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [249 kB]
160s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [210 kB]
160s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [5980 B]
160s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [316 B]
160s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [1592 kB]
163s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [657 kB]
164s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [33.1 kB]
164s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [25.2 kB]
165s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [4320 B]
165s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [996 B]
165s Fetched 4752 kB in 7s (666 kB/s)
166s Reading package lists...
166s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease
166s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease
166s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease
166s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease
167s Reading package lists...
167s Reading package lists...
167s Building dependency tree...
167s Reading state information...
167s Calculating upgrade...
167s The following package was automatically installed and is no longer required:
167s   libpython3.13
167s Use 'sudo apt autoremove' to remove it.
168s The following NEW packages will be installed:
168s   libpython3.14 libpython3.14-minimal libpython3.14-stdlib
168s   linux-headers-6.19.0-3 linux-headers-6.19.0-3-generic
168s   linux-image-6.19.0-3-generic linux-modules-6.19.0-3-generic
168s   linux-tools-6.19.0-3 linux-tools-6.19.0-3-generic
168s The following packages will be upgraded:
168s   3cpio amd64-microcode apt bpftool busybox-initramfs busybox-static
168s   cryptsetup-bin dash dbus dbus-bin dbus-daemon dbus-session-bus-common
168s   dbus-system-bus-common dbus-user-session debianutils dmsetup dracut-install
168s   ethtool findutils gir1.2-girepository-3.0 gir1.2-glib-2.0 hwdata iproute2
168s   iptables less libapt-pkg7.0 libattr1 libbpf1 libbsd0 libcryptsetup12
168s   libdbus-1-3 libdevmapper1.02.1 libdrm-amdgpu1 libdrm-common libdrm2
168s   libevent-core-2.1-7t64 libgdbm-compat4t64 libgdbm6t64 libgirepository-2.0-0
168s   libglib2.0-0t64 libglib2.0-data libgpm2 libgudev-1.0-0 libidn2-0 libip4tc2
168s   libip6tc2 libjansson4 libkeyutils1 liblsof0 libmaxminddb0
168s   libnetfilter-conntrack3 libnpth0t64 libonig5 libpcap0.8t64 libpci3
168s   libsensors-config libsensors5 libusb-1.0-0 libwrap0 libxau6 libxkbcommon0
168s   libxtables12 linux-generic linux-headers-generic linux-headers-virtual
168s   linux-image-generic linux-image-virtual linux-perf linux-tools-common
168s   linux-virtual lsof man-db mawk patch pciutils pnp.ids pollinate
168s   python3-linkify-it python3-markdown-it python3-referencing sed
168s   shared-mime-info tar tcpdump ubuntu-kernel-accessories ubuntu-standard wget
168s 87 upgraded, 9 newly installed, 0 to remove and 0 not upgraded.
168s Need to get 236 MB of archives.
168s After this operation, 339 MB of additional disk space will be used.
168s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 debianutils amd64 5.23.2build1 [93.3 kB]
168s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 dash amd64 0.5.12-12ubuntu3 [96.0 kB]
168s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 findutils amd64 4.10.0-3build2 [307 kB]
168s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 sed amd64 4.9-2build3 [195 kB]
168s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 tar amd64 1.35+dfsg-3.1build2 [257 kB]
168s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libattr1 amd64 1:2.5.2-3build2 [11.4 kB]
168s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libbsd0 amd64 0.12.2-2build2 [42.3 kB]
168s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 mawk amd64 1.3.4.20260129-1 [133 kB]
168s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 libapt-pkg7.0 amd64 3.1.15 [1151 kB]
170s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 apt amd64 3.1.15 [1479 kB]
172s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-system-bus-common all 1.16.2-2ubuntu3 [55.8 kB]
172s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-session-bus-common all 1.16.2-2ubuntu3 [54.4 kB]
172s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-user-session amd64 1.16.2-2ubuntu3 [9696 B]
172s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-daemon amd64 1.16.2-2ubuntu3 [119 kB]
172s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus-bin amd64 1.16.2-2ubuntu3 [40.1 kB]
172s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 dbus amd64 1.16.2-2ubuntu3 [24.2 kB]
172s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libdbus-1-3 amd64 1.16.2-2ubuntu3 [185 kB]
172s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libdevmapper1.02.1 amd64 2:1.02.205-2ubuntu3 [142 kB]
172s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 dmsetup amd64 2:1.02.205-2ubuntu3 [79.4 kB]
172s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 ethtool amd64 1:6.15-3build1 [318 kB]
172s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-girepository-3.0 amd64 2.87.2-2 [25.2 kB]
172s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libgirepository-2.0-0 amd64 2.87.2-2 [76.1 kB]
172s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gir1.2-glib-2.0 amd64 2.87.2-2 [182 kB]
172s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-0t64 amd64 2.87.2-2 [1613 kB]
175s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libbpf1 amd64 1:1.6.2-1build1 [184 kB]
175s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 iptables amd64 1.8.11-2ubuntu3 [381 kB]
175s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libip4tc2 amd64 1.8.11-2ubuntu3 [24.2 kB]
175s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libip6tc2 amd64 1.8.11-2ubuntu3 [24.4 kB]
175s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libnetfilter-conntrack3 amd64 1.1.1-1 [47.5 kB]
175s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 libxtables12 amd64 1.8.11-2ubuntu3 [36.6 kB]
175s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 iproute2 amd64 6.18.0-1ubuntu1 [1178 kB]
177s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 less amd64 668-1build1 [172 kB]
177s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 libcryptsetup12 amd64 2:2.8.0-1ubuntu3 [283 kB]
177s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libglib2.0-data all 2.87.2-2 [58.2 kB]
177s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libidn2-0 amd64 2.3.8-4build1 [67.6 kB]
177s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libkeyutils1 amd64 1.6.3-6ubuntu3 [10.6 kB]
177s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-linkify-it all 2.0.3-1ubuntu3 [19.4 kB]
177s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-markdown-it all 3.0.0-3build1 [54.4 kB]
177s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 shared-mime-info amd64 2.4-5build3 [476 kB]
177s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-static amd64 1:1.37.0-7ubuntu1 [1034 kB]
179s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-common all 2.4.131-1 [9774 B]
179s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm2 amd64 2.4.131-1 [42.3 kB]
179s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm6t64 amd64 1.26-1build1 [36.5 kB]
179s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libgpm2 amd64 1.20.7-12build1 [14.4 kB]
179s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 libjansson4 amd64 2.14-2build4 [33.2 kB]
179s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 lsof amd64 4.99.4+dfsg-2build2 [239 kB]
179s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsof0 amd64 4.99.4+dfsg-2build2 [56.5 kB]
179s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 libmaxminddb0 amd64 1.12.2-1build2 [18.9 kB]
179s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcap0.8t64 amd64 1.10.5-2ubuntu3 [154 kB]
179s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 pciutils amd64 1:3.14.0-1build2 [95.5 kB]
179s Get:51 http://ftpmaster.internal/ubuntu resolute/main amd64 libpci3 amd64 1:3.14.0-1build2 [38.1 kB]
179s Get:52 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors-config all 1:3.6.2-2build1 [6862 B]
179s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libsensors5 amd64 1:3.6.2-2build1 [28.9 kB]
179s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libusb-1.0-0 amd64 2:1.0.29-2build1 [56.9 kB]
179s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libxau6 amd64 1:1.0.11-1build2 [7502 B]
179s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libxkbcommon0 amd64 1.13.1-1 [159 kB]
179s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 man-db amd64 2.13.1-1build1 [1392 kB]
181s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 tcpdump amd64 4.99.5-2ubuntu3 [477 kB]
181s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 wget amd64 1.25.0-2ubuntu4 [353 kB]
181s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-standard amd64 1.564 [13.3 kB]
181s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 3cpio amd64 0.14.0-1ubuntu1 [285 kB]
182s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 bpftool amd64 7.7.0+6.19.0-3.3 [1229 kB]
183s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 busybox-initramfs amd64 1:1.37.0-7ubuntu1 [191 kB]
183s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 cryptsetup-bin amd64 2:2.8.0-1ubuntu3 [228 kB]
183s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 dracut-install amd64 109-11ubuntu1 [45.8 kB]
183s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 hwdata all 0.394-1build1 [1566 B]
183s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 pnp.ids all 0.394-1build1 [29.6 kB]
183s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libdrm-amdgpu1 amd64 2.4.131-1 [23.2 kB]
183s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10build2 [93.1 kB]
183s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libgdbm-compat4t64 amd64 1.26-1build1 [6796 B]
183s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libgudev-1.0-0 amd64 1:238-7build1 [15.9 kB]
183s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libnpth0t64 amd64 1.8-3build1 [9302 B]
184s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libonig5 amd64 6.9.10-1build1 [174 kB]
184s Get:74 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB]
185s Get:75 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB]
189s Get:76 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14 amd64 3.14.2-1 [2568 kB]
193s Get:77 http://ftpmaster.internal/ubuntu resolute/main amd64 libwrap0 amd64 7.6.q-36build2 [48.5 kB]
193s Get:78 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-modules-6.19.0-3-generic amd64 6.19.0-3.3 [171 MB]
515s Get:79 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-6.19.0-3-generic amd64 6.19.0-3.3+1 [16.8 MB]
559s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 amd64-microcode amd64 3.20251202.1ubuntu1 [459 kB]
559s Get:81 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-generic amd64 6.19.0-3.3 [1698 B]
559s Get:82 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-generic amd64 6.19.0-3.3 [12.2 kB]
559s Get:83 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-virtual amd64 6.19.0-3.3 [1700 B]
559s Get:84 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-image-virtual amd64 6.19.0-3.3 [12.1 kB]
559s Get:85 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-virtual amd64 6.19.0-3.3 [1646 B]
559s Get:86 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3 all 6.19.0-3.3 [14.9 MB]
587s Get:87 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-6.19.0-3-generic amd64 6.19.0-3.3 [4330 kB]
599s Get:88 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-headers-generic amd64 6.19.0-3.3 [12.0 kB]
599s Get:89 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-perf amd64 6.19.0-3.3 [4480 kB]
608s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-common all 6.19.0-3.3 [345 kB]
608s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3 amd64 6.19.0-3.3 [1455 kB]
611s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-tools-6.19.0-3-generic amd64 6.19.0-3.3 [1612 B]
611s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 patch amd64 2.8-2build1 [95.7 kB]
611s Get:94 http://ftpmaster.internal/ubuntu resolute/main amd64 pollinate all 4.33-4ubuntu5 [14.0 kB]
611s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-referencing all 0.36.2-1ubuntu2 [22.2 kB]
611s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 ubuntu-kernel-accessories amd64 1.564 [13.1 kB]
611s dpkg-preconfigure: unable to re-open stdin: No such file or directory
611s Fetched 236 MB in 7min 23s (532 kB/s)
611s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83957 files and directories currently installed.)
611s Preparing to unpack .../debianutils_5.23.2build1_amd64.deb ...
611s Unpacking debianutils (5.23.2build1) over (5.23.2) ...
611s Setting up debianutils (5.23.2build1) ...
611s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83957 files and directories currently installed.)
611s Preparing to unpack .../dash_0.5.12-12ubuntu3_amd64.deb ...
611s Unpacking dash (0.5.12-12ubuntu3) over (0.5.12-12ubuntu2) ...
611s Setting up dash (0.5.12-12ubuntu3) ...
611s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83957 files and directories currently installed.)
611s Preparing to unpack .../findutils_4.10.0-3build2_amd64.deb ...
611s Unpacking findutils (4.10.0-3build2) over (4.10.0-3build1) ...
611s Setting up findutils (4.10.0-3build2) ...
611s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83957 files and directories currently installed.)
611s Preparing to unpack .../sed_4.9-2build3_amd64.deb ...
611s Unpacking sed (4.9-2build3) over (4.9-2build2) ...
611s Setting up sed (4.9-2build3) ...
612s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83957 files and directories currently installed.)
612s Preparing to unpack .../tar_1.35+dfsg-3.1build2_amd64.deb ...
612s Unpacking tar (1.35+dfsg-3.1build2) over (1.35+dfsg-3.1build1) ...
612s Setting up tar (1.35+dfsg-3.1build2) ...
612s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83957 files and directories currently installed.)
612s Preparing to unpack .../libattr1_1%3a2.5.2-3build2_amd64.deb ...
612s Unpacking libattr1:amd64 (1:2.5.2-3build2) over (1:2.5.2-3build1) ...
612s Setting up libattr1:amd64 (1:2.5.2-3build2) ...
612s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 83957 files and directories currently installed.)
612s Preparing to unpack .../00-libbsd0_0.12.2-2build2_amd64.deb ...
612s Unpacking libbsd0:amd64 (0.12.2-2build2) over (0.12.2-2build1) ...
612s Preparing to unpack .../01-mawk_1.3.4.20260129-1_amd64.deb ...
612s Unpacking mawk (1.3.4.20260129-1) over (1.3.4.20250131-2) ...
612s Preparing to unpack .../02-libapt-pkg7.0_3.1.15_amd64.deb ...
612s Unpacking libapt-pkg7.0:amd64 (3.1.15) over (3.1.14) ...
612s Preparing to unpack .../03-apt_3.1.15_amd64.deb ...
612s Unpacking apt (3.1.15) over (3.1.14) ...
612s Preparing to unpack .../04-dbus-system-bus-common_1.16.2-2ubuntu3_all.deb ...
612s Unpacking dbus-system-bus-common (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ...
612s Preparing to unpack .../05-dbus-session-bus-common_1.16.2-2ubuntu3_all.deb ...
612s Unpacking dbus-session-bus-common (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ...
612s Preparing to unpack .../06-dbus-user-session_1.16.2-2ubuntu3_amd64.deb ...
612s Unpacking dbus-user-session (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ...
612s Preparing to unpack .../07-dbus-daemon_1.16.2-2ubuntu3_amd64.deb ...
612s Unpacking dbus-daemon (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ...
612s Preparing to unpack .../08-dbus-bin_1.16.2-2ubuntu3_amd64.deb ...
612s Unpacking dbus-bin (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ...
612s Preparing to unpack .../09-dbus_1.16.2-2ubuntu3_amd64.deb ...
612s Unpacking dbus (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ...
612s Preparing to unpack .../10-libdbus-1-3_1.16.2-2ubuntu3_amd64.deb ...
612s Unpacking libdbus-1-3:amd64 (1.16.2-2ubuntu3) over (1.16.2-2ubuntu2) ...
612s Preparing to unpack .../11-libdevmapper1.02.1_2%3a1.02.205-2ubuntu3_amd64.deb ...
612s Unpacking libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ...
612s Preparing to unpack .../12-dmsetup_2%3a1.02.205-2ubuntu3_amd64.deb ...
612s Unpacking dmsetup (2:1.02.205-2ubuntu3) over (2:1.02.205-2ubuntu2) ...
612s Preparing to unpack .../13-ethtool_1%3a6.15-3build1_amd64.deb ...
612s Unpacking ethtool (1:6.15-3build1) over (1:6.15-3) ...
612s Preparing to unpack .../14-gir1.2-girepository-3.0_2.87.2-2_amd64.deb ...
612s Unpacking gir1.2-girepository-3.0:amd64 (2.87.2-2) over (2.86.3-4) ...
612s Preparing to unpack .../15-libgirepository-2.0-0_2.87.2-2_amd64.deb ...
612s Unpacking libgirepository-2.0-0:amd64 (2.87.2-2) over (2.86.3-4) ...
612s Preparing to unpack .../16-gir1.2-glib-2.0_2.87.2-2_amd64.deb ...
612s Unpacking gir1.2-glib-2.0:amd64 (2.87.2-2) over (2.86.3-4) ...
612s Preparing to unpack .../17-libglib2.0-0t64_2.87.2-2_amd64.deb ...
612s Unpacking libglib2.0-0t64:amd64 (2.87.2-2) over (2.86.3-4) ...
612s Preparing to unpack .../18-libbpf1_1%3a1.6.2-1build1_amd64.deb ...
612s Unpacking libbpf1:amd64 (1:1.6.2-1build1) over (1:1.6.2-1) ...
612s Preparing to unpack .../19-iptables_1.8.11-2ubuntu3_amd64.deb ...
612s Unpacking iptables (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ...
613s Preparing to unpack .../20-libip4tc2_1.8.11-2ubuntu3_amd64.deb ...
613s Unpacking libip4tc2:amd64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ...
613s Preparing to unpack .../21-libip6tc2_1.8.11-2ubuntu3_amd64.deb ...
613s Unpacking libip6tc2:amd64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ...
613s Preparing to unpack .../22-libnetfilter-conntrack3_1.1.1-1_amd64.deb ...
613s Unpacking libnetfilter-conntrack3:amd64 (1.1.1-1) over (1.1.0-1build1) ...
613s Preparing to unpack .../23-libxtables12_1.8.11-2ubuntu3_amd64.deb ...
613s Unpacking libxtables12:amd64 (1.8.11-2ubuntu3) over (1.8.11-2ubuntu2) ...
613s Preparing to unpack .../24-iproute2_6.18.0-1ubuntu1_amd64.deb ...
613s Unpacking iproute2 (6.18.0-1ubuntu1) over (6.16.0-1ubuntu3) ...
613s Preparing to unpack .../25-less_668-1build1_amd64.deb ...
613s Unpacking less (668-1build1) over (668-1) ...
613s Preparing to unpack .../26-libcryptsetup12_2%3a2.8.0-1ubuntu3_amd64.deb ...
613s Unpacking libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ...
613s Preparing to unpack .../27-libglib2.0-data_2.87.2-2_all.deb ...
613s Unpacking libglib2.0-data (2.87.2-2) over (2.86.3-4) ...
613s Preparing to unpack .../28-libidn2-0_2.3.8-4build1_amd64.deb ...
613s Unpacking libidn2-0:amd64 (2.3.8-4build1) over (2.3.8-4) ...
613s Preparing to unpack .../29-libkeyutils1_1.6.3-6ubuntu3_amd64.deb ...
613s Unpacking libkeyutils1:amd64 (1.6.3-6ubuntu3) over (1.6.3-6ubuntu2) ...
613s Preparing to unpack .../30-python3-linkify-it_2.0.3-1ubuntu3_all.deb ...
613s Unpacking python3-linkify-it (2.0.3-1ubuntu3) over (2.0.3-1ubuntu2) ...
613s Preparing to unpack .../31-python3-markdown-it_3.0.0-3build1_all.deb ...
613s Unpacking python3-markdown-it (3.0.0-3build1) over (3.0.0-3) ...
613s Preparing to unpack .../32-shared-mime-info_2.4-5build3_amd64.deb ...
613s Unpacking shared-mime-info (2.4-5build3) over (2.4-5build2) ...
613s Preparing to unpack .../33-busybox-static_1%3a1.37.0-7ubuntu1_amd64.deb ...
613s Unpacking busybox-static (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ...
613s Preparing to unpack .../34-libdrm-common_2.4.131-1_all.deb ...
613s Unpacking libdrm-common (2.4.131-1) over (2.4.129-1) ...
613s Preparing to unpack .../35-libdrm2_2.4.131-1_amd64.deb ...
613s Unpacking libdrm2:amd64 (2.4.131-1) over (2.4.129-1) ...
613s Preparing to unpack .../36-libgdbm6t64_1.26-1build1_amd64.deb ...
613s Unpacking libgdbm6t64:amd64 (1.26-1build1) over (1.26-1) ...
613s Preparing to unpack .../37-libgpm2_1.20.7-12build1_amd64.deb ...
613s Unpacking libgpm2:amd64 (1.20.7-12build1) over (1.20.7-12) ...
613s Preparing to unpack .../38-libjansson4_2.14-2build4_amd64.deb ...
613s Unpacking libjansson4:amd64 (2.14-2build4) over (2.14-2build3) ...
613s Preparing to unpack .../39-lsof_4.99.4+dfsg-2build2_amd64.deb ...
613s Unpacking lsof (4.99.4+dfsg-2build2) over (4.99.4+dfsg-2build1) ...
613s Preparing to unpack .../40-liblsof0_4.99.4+dfsg-2build2_amd64.deb ...
613s Unpacking liblsof0 (4.99.4+dfsg-2build2) over (4.99.4+dfsg-2build1) ...
613s Preparing to unpack .../41-libmaxminddb0_1.12.2-1build2_amd64.deb ...
613s Unpacking libmaxminddb0:amd64 (1.12.2-1build2) over (1.12.2-1build1) ...
614s Preparing to unpack .../42-libpcap0.8t64_1.10.5-2ubuntu3_amd64.deb ...
614s Unpacking libpcap0.8t64:amd64 (1.10.5-2ubuntu3) over (1.10.5-2ubuntu2) ...
614s Preparing to unpack .../43-pciutils_1%3a3.14.0-1build2_amd64.deb ...
614s Unpacking pciutils (1:3.14.0-1build2) over (1:3.14.0-1build1) ...
614s Preparing to unpack .../44-libpci3_1%3a3.14.0-1build2_amd64.deb ...
614s Unpacking libpci3:amd64 (1:3.14.0-1build2) over (1:3.14.0-1build1) ...
614s Preparing to unpack .../45-libsensors-config_1%3a3.6.2-2build1_all.deb ...
614s Unpacking libsensors-config (1:3.6.2-2build1) over (1:3.6.2-2) ...
614s Preparing to unpack .../46-libsensors5_1%3a3.6.2-2build1_amd64.deb ...
614s Unpacking libsensors5:amd64 (1:3.6.2-2build1) over (1:3.6.2-2) ...
614s Preparing to unpack .../47-libusb-1.0-0_2%3a1.0.29-2build1_amd64.deb ...
614s Unpacking libusb-1.0-0:amd64 (2:1.0.29-2build1) over (2:1.0.29-2) ...
614s Preparing to unpack .../48-libxau6_1%3a1.0.11-1build2_amd64.deb ...
614s Unpacking libxau6:amd64 (1:1.0.11-1build2) over (1:1.0.11-1build1) ...
614s Preparing to unpack .../49-libxkbcommon0_1.13.1-1_amd64.deb ...
614s Unpacking libxkbcommon0:amd64 (1.13.1-1) over (1.12.3-1) ...
614s Preparing to unpack .../50-man-db_2.13.1-1build1_amd64.deb ...
614s Unpacking man-db (2.13.1-1build1) over (2.13.1-1) ...
614s Preparing to unpack .../51-tcpdump_4.99.5-2ubuntu3_amd64.deb ...
614s Unpacking tcpdump (4.99.5-2ubuntu3) over (4.99.5-2ubuntu2) ...
614s Preparing to unpack .../52-wget_1.25.0-2ubuntu4_amd64.deb ...
614s Unpacking wget (1.25.0-2ubuntu4) over (1.25.0-2ubuntu3) ...
614s Preparing to unpack .../53-ubuntu-standard_1.564_amd64.deb ...
614s Unpacking ubuntu-standard (1.564) over (1.563) ...
614s Preparing to unpack .../54-3cpio_0.14.0-1ubuntu1_amd64.deb ...
614s Unpacking 3cpio (0.14.0-1ubuntu1) over (0.13.1-1ubuntu1) ...
614s Preparing to unpack .../55-bpftool_7.7.0+6.19.0-3.3_amd64.deb ...
614s Unpacking bpftool (7.7.0+6.19.0-3.3) over (7.7.0+6.18.0-9.9) ...
614s Preparing to unpack .../56-busybox-initramfs_1%3a1.37.0-7ubuntu1_amd64.deb ...
614s Unpacking busybox-initramfs (1:1.37.0-7ubuntu1) over (1:1.37.0-4ubuntu1) ...
614s Preparing to unpack .../57-cryptsetup-bin_2%3a2.8.0-1ubuntu3_amd64.deb ...
614s Unpacking cryptsetup-bin (2:2.8.0-1ubuntu3) over (2:2.8.0-1ubuntu2) ...
614s Preparing to unpack .../58-dracut-install_109-11ubuntu1_amd64.deb ...
614s Unpacking dracut-install (109-11ubuntu1) over (109-9ubuntu1) ...
614s Preparing to unpack .../59-hwdata_0.394-1build1_all.deb ...
614s Unpacking hwdata (0.394-1build1) over (0.394-1) ...
614s Preparing to unpack .../60-pnp.ids_0.394-1build1_all.deb ...
614s Unpacking pnp.ids (0.394-1build1) over (0.394-1) ...
614s Preparing to unpack .../61-libdrm-amdgpu1_2.4.131-1_amd64.deb ...
614s Unpacking libdrm-amdgpu1:amd64 (2.4.131-1) over (2.4.129-1) ...
614s Preparing to unpack .../62-libevent-core-2.1-7t64_2.1.12-stable-10build2_amd64.deb ...
614s Unpacking libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) over (2.1.12-stable-10build1) ...
614s Preparing to unpack .../63-libgdbm-compat4t64_1.26-1build1_amd64.deb ...
614s Unpacking libgdbm-compat4t64:amd64 (1.26-1build1) over (1.26-1) ...
614s Preparing to unpack .../64-libgudev-1.0-0_1%3a238-7build1_amd64.deb ...
614s Unpacking libgudev-1.0-0:amd64 (1:238-7build1) over (1:238-7) ...
614s Preparing to unpack .../65-libnpth0t64_1.8-3build1_amd64.deb ...
614s Unpacking libnpth0t64:amd64 (1.8-3build1) over (1.8-3) ...
614s Preparing to unpack .../66-libonig5_6.9.10-1build1_amd64.deb ...
614s Unpacking libonig5:amd64 (6.9.10-1build1) over (6.9.10-1) ...
614s Selecting previously unselected package libpython3.14-minimal:amd64.
614s Preparing to unpack .../67-libpython3.14-minimal_3.14.2-1_amd64.deb ...
614s Unpacking libpython3.14-minimal:amd64 (3.14.2-1) ...
614s Selecting previously unselected package libpython3.14-stdlib:amd64.
614s Preparing to unpack .../68-libpython3.14-stdlib_3.14.2-1_amd64.deb ...
614s Unpacking libpython3.14-stdlib:amd64 (3.14.2-1) ...
614s Selecting previously unselected package libpython3.14:amd64.
614s Preparing to unpack .../69-libpython3.14_3.14.2-1_amd64.deb ...
614s Unpacking libpython3.14:amd64 (3.14.2-1) ...
615s Preparing to unpack .../70-libwrap0_7.6.q-36build2_amd64.deb ...
615s Unpacking libwrap0:amd64 (7.6.q-36build2) over (7.6.q-36build1) ...
615s Selecting previously unselected package linux-modules-6.19.0-3-generic.
615s Preparing to unpack .../71-linux-modules-6.19.0-3-generic_6.19.0-3.3_amd64.deb ...
615s Unpacking linux-modules-6.19.0-3-generic (6.19.0-3.3) ...
615s Selecting previously unselected package linux-image-6.19.0-3-generic.
615s Preparing to unpack .../72-linux-image-6.19.0-3-generic_6.19.0-3.3+1_amd64.deb ...
615s Unpacking linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
615s Preparing to unpack .../73-amd64-microcode_3.20251202.1ubuntu1_amd64.deb ...
615s Unpacking amd64-microcode (3.20251202.1ubuntu1) over (3.20250708.1ubuntu1) ...
615s Preparing to unpack .../74-linux-generic_6.19.0-3.3_amd64.deb ...
615s Unpacking linux-generic (6.19.0-3.3) over (6.18.0-9.9+1) ...
615s Preparing to unpack .../75-linux-image-generic_6.19.0-3.3_amd64.deb ...
615s Unpacking linux-image-generic (6.19.0-3.3) over (6.18.0-9.9+1) ...
616s Preparing to unpack .../76-linux-virtual_6.19.0-3.3_amd64.deb ...
616s Unpacking linux-virtual (6.19.0-3.3) over (6.18.0-9.9+1) ...
616s Preparing to unpack .../77-linux-image-virtual_6.19.0-3.3_amd64.deb ...
616s Unpacking linux-image-virtual (6.19.0-3.3) over (6.18.0-9.9+1) ...
616s Preparing to unpack .../78-linux-headers-virtual_6.19.0-3.3_amd64.deb ...
616s Unpacking linux-headers-virtual (6.19.0-3.3) over (6.18.0-9.9+1) ...
616s Selecting previously unselected package linux-headers-6.19.0-3.
616s Preparing to unpack .../79-linux-headers-6.19.0-3_6.19.0-3.3_all.deb ...
616s Unpacking linux-headers-6.19.0-3 (6.19.0-3.3) ...
617s Selecting previously unselected package linux-headers-6.19.0-3-generic.
617s Preparing to unpack .../80-linux-headers-6.19.0-3-generic_6.19.0-3.3_amd64.deb ...
617s Unpacking linux-headers-6.19.0-3-generic (6.19.0-3.3) ...
617s Preparing to unpack .../81-linux-headers-generic_6.19.0-3.3_amd64.deb ...
617s Unpacking linux-headers-generic (6.19.0-3.3) over (6.18.0-9.9+1) ...
617s Preparing to unpack .../82-linux-perf_6.19.0-3.3_amd64.deb ...
617s Unpacking linux-perf (6.19.0-3.3) over (6.18.0-9.9) ...
618s Preparing to unpack .../83-linux-tools-common_6.19.0-3.3_all.deb ...
618s Unpacking linux-tools-common (6.19.0-3.3) over (6.18.0-9.9) ...
618s Selecting previously unselected package linux-tools-6.19.0-3.
618s Preparing to unpack .../84-linux-tools-6.19.0-3_6.19.0-3.3_amd64.deb ...
618s Unpacking linux-tools-6.19.0-3 (6.19.0-3.3) ...
618s Selecting previously unselected package linux-tools-6.19.0-3-generic.
618s Preparing to unpack .../85-linux-tools-6.19.0-3-generic_6.19.0-3.3_amd64.deb ...
618s Unpacking linux-tools-6.19.0-3-generic (6.19.0-3.3) ...
618s Preparing to unpack .../86-patch_2.8-2build1_amd64.deb ...
618s Unpacking patch (2.8-2build1) over (2.8-2) ...
618s Preparing to unpack .../87-pollinate_4.33-4ubuntu5_all.deb ...
618s Unpacking pollinate (4.33-4ubuntu5) over (4.33-4ubuntu4) ...
618s Preparing to unpack .../88-python3-referencing_0.36.2-1ubuntu2_all.deb ...
618s Unpacking python3-referencing (0.36.2-1ubuntu2) over (0.36.2-1ubuntu1) ...
618s Preparing to unpack .../89-ubuntu-kernel-accessories_1.564_amd64.deb ...
618s Unpacking ubuntu-kernel-accessories (1.564) over (1.563) ...
618s Setting up libip4tc2:amd64 (1.8.11-2ubuntu3) ...
618s Setting up 3cpio (0.14.0-1ubuntu1) ...
618s Setting up libxau6:amd64 (1:1.0.11-1build2) ...
618s Setting up libnpth0t64:amd64 (1.8-3build1) ...
618s Setting up libkeyutils1:amd64 (1.6.3-6ubuntu3) ...
618s Setting up ubuntu-kernel-accessories (1.564) ...
618s Setting up libgpm2:amd64 (1.20.7-12build1) ...
618s Setting up libgdbm6t64:amd64 (1.26-1build1) ...
618s Setting up linux-modules-6.19.0-3-generic (6.19.0-3.3) ...
619s Setting up libgdbm-compat4t64:amd64 (1.26-1build1) ...
619s Setting up bpftool (7.7.0+6.19.0-3.3) ...
619s Setting up libip6tc2:amd64 (1.8.11-2ubuntu3) ...
619s Setting up liblsof0 (4.99.4+dfsg-2build2) ...
619s Setting up libmaxminddb0:amd64 (1.12.2-1build2) ...
619s Setting up libpython3.14-minimal:amd64 (3.14.2-1) ...
619s Setting up libsensors-config (1:3.6.2-2build1) ...
619s Setting up less (668-1build1) ...
619s Setting up linux-headers-6.19.0-3 (6.19.0-3.3) ...
619s Setting up libidn2-0:amd64 (2.3.8-4build1) ...
619s Setting up amd64-microcode (3.20251202.1ubuntu1) ...
619s amd64-microcode: microcode will be updated at next boot
619s Setting up man-db (2.13.1-1build1) ...
619s Updating database of manual pages ...
621s man-db.service is a disabled or a static unit not running, not starting it.
621s Setting up libjansson4:amd64 (2.14-2build4) ...
621s Setting up libglib2.0-0t64:amd64 (2.87.2-2) ...
621s No schema files found: doing nothing.
621s Setting up libglib2.0-data (2.87.2-2) ...
621s Setting up pollinate (4.33-4ubuntu5) ...
631s Setting up busybox-static (1:1.37.0-7ubuntu1) ...
631s Setting up libwrap0:amd64 (7.6.q-36build2) ...
631s Setting up linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
632s I: /boot/vmlinuz is now a symlink to vmlinuz-6.19.0-3-generic
632s I: /boot/initrd.img is now a symlink to initrd.img-6.19.0-3-generic
632s Setting up libdbus-1-3:amd64 (1.16.2-2ubuntu3) ...
632s Setting up shared-mime-info (2.4-5build3) ...
633s Setting up patch (2.8-2build1) ...
633s Setting up gir1.2-glib-2.0:amd64 (2.87.2-2) ...
633s Setting up libsensors5:amd64 (1:3.6.2-2build1) ...
633s Setting up busybox-initramfs (1:1.37.0-7ubuntu1) ...
633s Setting up libxtables12:amd64 (1.8.11-2ubuntu3) ...
633s Setting up lsof (4.99.4+dfsg-2build2) ...
633s Setting up libpci3:amd64 (1:3.14.0-1build2) ...
633s Setting up libdevmapper1.02.1:amd64 (2:1.02.205-2ubuntu3) ...
633s Setting up dracut-install (109-11ubuntu1) ...
633s Setting up dmsetup (2:1.02.205-2ubuntu3) ...
633s Setting up libnetfilter-conntrack3:amd64 (1.1.1-1) ...
633s Setting up pnp.ids (0.394-1build1) ...
633s Setting up dbus-session-bus-common (1.16.2-2ubuntu3) ...
633s Setting up python3-linkify-it (2.0.3-1ubuntu3) ...
633s Setting up libpcap0.8t64:amd64 (1.10.5-2ubuntu3) ...
633s Setting up libcryptsetup12:amd64 (2:2.8.0-1ubuntu3) ...
633s Setting up mawk (1.3.4.20260129-1) ...
633s Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10build2) ...
633s Setting up libusb-1.0-0:amd64 (2:1.0.29-2build1) ...
633s Setting up libapt-pkg7.0:amd64 (3.1.15) ...
633s Setting up linux-image-virtual (6.19.0-3.3) ...
633s Setting up dbus-system-bus-common (1.16.2-2ubuntu3) ...
633s Setting up libbsd0:amd64 (0.12.2-2build2) ...
633s Setting up libdrm-common (2.4.131-1) ...
633s Setting up dbus-bin (1.16.2-2ubuntu3) ...
633s Setting up libonig5:amd64 (6.9.10-1build1) ...
633s Setting up libgudev-1.0-0:amd64 (1:238-7build1) ...
633s Setting up libbpf1:amd64 (1:1.6.2-1build1) ...
633s Setting up ethtool (1:6.15-3build1) ...
633s Setting up python3-referencing (0.36.2-1ubuntu2) ...
634s Setting up libxkbcommon0:amd64 (1.13.1-1) ...
634s Setting up cryptsetup-bin (2:2.8.0-1ubuntu3) ...
634s Setting up linux-headers-6.19.0-3-generic (6.19.0-3.3) ...
634s Setting up tcpdump (4.99.5-2ubuntu3) ...
634s Setting up linux-image-generic (6.19.0-3.3) ...
634s Setting up apt (3.1.15) ...
634s Setting up wget (1.25.0-2ubuntu4) ...
634s Setting up libgirepository-2.0-0:amd64 (2.87.2-2) ...
634s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ...
634s Setting up iptables (1.8.11-2ubuntu3) ...
634s Setting up iproute2 (6.18.0-1ubuntu1) ...
634s Setting up linux-headers-generic (6.19.0-3.3) ...
634s Setting up dbus-daemon (1.16.2-2ubuntu3) ...
634s Setting up gir1.2-girepository-3.0:amd64 (2.87.2-2) ...
634s Setting up hwdata (0.394-1build1) ...
634s Setting up dbus-user-session (1.16.2-2ubuntu3) ...
634s Setting up dbus (1.16.2-2ubuntu3) ...
634s A reboot is required to replace the running dbus-daemon.
634s Please reboot the system when convenient.
634s Setting up pciutils (1:3.14.0-1build2) ...
634s Setting up python3-markdown-it (3.0.0-3build1) ...
635s Setting up libdrm2:amd64 (2.4.131-1) ...
635s Setting up libpython3.14:amd64 (3.14.2-1) ...
635s Setting up linux-tools-common (6.19.0-3.3) ...
635s Setting up libdrm-amdgpu1:amd64 (2.4.131-1) ...
635s Setting up linux-headers-virtual (6.19.0-3.3) ...
635s Setting up linux-generic (6.19.0-3.3) ...
635s Setting up linux-tools-6.19.0-3 (6.19.0-3.3) ...
635s Setting up ubuntu-standard (1.564) ...
635s Setting up linux-virtual (6.19.0-3.3) ...
635s Setting up linux-perf (6.19.0-3.3) ...
635s Setting up linux-tools-6.19.0-3-generic (6.19.0-3.3) ...
635s Processing triggers for debianutils (5.23.2build1) ...
635s Processing triggers for install-info (7.2-5) ...
635s Processing triggers for initramfs-tools (0.150ubuntu7) ...
635s update-initramfs: Generating /boot/initrd.img-6.18.0-9-generic
639s Processing triggers for libc-bin (2.42-2ubuntu4) ...
639s Processing triggers for linux-image-6.19.0-3-generic (6.19.0-3.3+1) ...
639s /etc/kernel/postinst.d/initramfs-tools:
639s update-initramfs: Generating /boot/initrd.img-6.19.0-3-generic
644s /etc/kernel/postinst.d/zz-update-grub:
644s Sourcing file `/etc/default/grub'
644s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
644s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
644s Generating grub configuration file ...
644s Found linux image: /boot/vmlinuz-6.19.0-3-generic
644s Found initrd image: /boot/initrd.img-6.19.0-3-generic
644s Found linux image: /boot/vmlinuz-6.18.0-9-generic
644s Found initrd image: /boot/initrd.img-6.18.0-9-generic
644s Warning: os-prober will not be executed to detect other bootable partitions.
644s Systems on them will not be added to the GRUB boot configuration.
644s Check GRUB_DISABLE_OS_PROBER documentation entry.
644s Adding boot menu entry for UEFI Firmware Settings ...
644s done
644s autopkgtest [23:34:10]: upgrading testbed (apt dist-upgrade and autopurge)
645s Reading package lists...
645s Building dependency tree...
645s Reading state information...
645s Calculating upgrade...
645s The following package was automatically installed and is no longer required:
645s   libpython3.13
645s Use 'sudo apt autoremove' to remove it.
645s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
645s Reading package lists...
646s Building dependency tree...
646s Reading state information...
646s Solving dependencies...
646s The following packages will be REMOVED:
646s   libpython3.13*
646s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
646s After this operation, 7599 kB disk space will be freed.
646s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 125268 files and directories currently installed.)
646s Removing libpython3.13:amd64 (3.13.11-1) ...
646s Processing triggers for libc-bin (2.42-2ubuntu4) ...
646s autopkgtest [23:34:12]: rebooting testbed after setup commands that affected boot
678s autopkgtest [23:34:44]: testbed running kernel: Linux 6.19.0-3-generic #3-Ubuntu SMP PREEMPT_DYNAMIC Fri Jan 23 20:01:24 UTC 2026
680s autopkgtest [23:34:46]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-geneplotter
683s Get:1 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-geneplotter 1.84.0+dfsg-2 (dsc) [2263 B]
683s Get:2 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-geneplotter 1.84.0+dfsg-2 (tar) [1377 kB]
683s Get:3 http://ftpmaster.internal/ubuntu resolute/universe r-bioc-geneplotter 1.84.0+dfsg-2 (diff) [3976 B]
683s gpgv: Signature made Mon Jan 13 13:50:52 2025 UTC
683s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
683s gpgv:                issuer "crusoe@debian.org"
683s gpgv: Can't check signature: No public key
683s dpkg-source: warning: cannot verify inline signature for ./r-bioc-geneplotter_1.84.0+dfsg-2.dsc: no acceptable signature found
683s autopkgtest [23:34:49]: testing package r-bioc-geneplotter version 1.84.0+dfsg-2
684s autopkgtest [23:34:50]: build not needed
686s autopkgtest [23:34:52]: test pkg-r-autopkgtest: preparing testbed
686s Reading package lists...
686s Building dependency tree...
686s Reading state information...
686s Solving dependencies...
686s The following NEW packages will be installed:
686s   build-essential cpp cpp-15 cpp-15-x86-64-linux-gnu cpp-x86-64-linux-gnu
686s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
686s   fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax
686s   g++ g++-15 g++-15-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-15
686s   gcc-15-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-15
686s   gfortran-15-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools
686s   javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3
686s   libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdatrie1
686s   libdeflate-dev libdeflate0 libfontconfig1 libgcc-15-dev libgfortran-15-dev
686s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6
686s   libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev
686s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap
686s   libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
686s   libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json
686s   libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr
686s   libjs-popper.js libjs-prettify libjs-sifter.js
686s   libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3
686s   liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3
686s   libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
686s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
686s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1
686s   libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-15-dev
686s   libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0
686s   libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7
686s   libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1
686s   libxss1 libxt6t64 libzstd-dev libzzip-0-13t64 linux-libc-dev
686s   node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data
686s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-annotate
686s   r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocstyle
686s   r-bioc-biocversion r-bioc-biostrings r-bioc-geneplotter r-bioc-genomeinfodb
686s   r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-keggrest r-bioc-s4vectors
686s   r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-askpass
686s   r-cran-base64enc r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-blob
686s   r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-commonmark
686s   r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-digest
686s   r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-glue
686s   r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-jquerylib
686s   r-cran-jsonlite r-cran-knitr r-cran-later r-cran-lattice r-cran-lifecycle
686s   r-cran-littler r-cran-magrittr r-cran-memoise r-cran-mime r-cran-openssl
686s   r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-promises
686s   r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rlang
686s   r-cran-rmarkdown r-cran-rsqlite r-cran-sass r-cran-shiny r-cran-sourcetools
686s   r-cran-sys r-cran-tinytex r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml
686s   r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base
686s   texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common
686s   xdg-utils zip zlib1g-dev
686s 0 upgraded, 230 newly installed, 0 to remove and 0 not upgraded.
686s Need to get 391 MB of archives.
686s After this operation, 1149 MB of additional disk space will be used.
686s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libc-dev-bin amd64 2.42-2ubuntu4 [23.3 kB]
686s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 linux-libc-dev amd64 6.19.0-3.3 [1846 kB]
690s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libcrypt-dev amd64 1:4.5.1-1 [122 kB]
690s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 rpcsvc-proto amd64 1.4.3-1build1 [68.3 kB]
690s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libc6-dev amd64 2.42-2ubuntu4 [2207 kB]
693s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 libisl23 amd64 0.27-1build1 [691 kB]
695s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 libmpc3 amd64 1.3.1-2 [54.8 kB]
695s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [12.9 MB]
720s Get:9 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-15 amd64 15.2.0-12ubuntu1 [1034 B]
720s Get:10 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [5746 B]
720s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 cpp amd64 4:15.2.0-4ubuntu1 [22.4 kB]
720s Get:12 http://ftpmaster.internal/ubuntu resolute/main amd64 libcc1-0 amd64 15.2.0-12ubuntu1 [47.4 kB]
720s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-12ubuntu1 [151 kB]
720s Get:14 http://ftpmaster.internal/ubuntu resolute/main amd64 libitm1 amd64 15.2.0-12ubuntu1 [29.5 kB]
720s Get:15 http://ftpmaster.internal/ubuntu resolute/main amd64 libasan8 amd64 15.2.0-12ubuntu1 [3070 kB]
726s Get:16 http://ftpmaster.internal/ubuntu resolute/main amd64 liblsan0 amd64 15.2.0-12ubuntu1 [1360 kB]
730s Get:17 http://ftpmaster.internal/ubuntu resolute/main amd64 libtsan2 amd64 15.2.0-12ubuntu1 [2757 kB]
740s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 libubsan1 amd64 15.2.0-12ubuntu1 [1210 kB]
743s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 libhwasan0 amd64 15.2.0-12ubuntu1 [1685 kB]
749s Get:20 http://ftpmaster.internal/ubuntu resolute/main amd64 libquadmath0 amd64 15.2.0-12ubuntu1 [153 kB]
749s Get:21 http://ftpmaster.internal/ubuntu resolute/main amd64 libgcc-15-dev amd64 15.2.0-12ubuntu1 [2866 kB]
755s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [25.4 MB]
816s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-15 amd64 15.2.0-12ubuntu1 [530 kB]
818s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1208 B]
818s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 gcc amd64 4:15.2.0-4ubuntu1 [5024 B]
818s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 libstdc++-15-dev amd64 15.2.0-12ubuntu1 [2553 kB]
824s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [14.4 MB]
848s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-15 amd64 15.2.0-12ubuntu1 [25.3 kB]
848s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 g++-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [966 B]
848s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 g++ amd64 4:15.2.0-4ubuntu1 [1100 B]
848s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 build-essential amd64 12.12ubuntu2 [5256 B]
848s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 dctrl-tools amd64 2.24-3build4 [104 kB]
848s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB]
849s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB]
850s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.17.1-3ubuntu1 [38.5 kB]
850s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.17.1-3ubuntu1 [144 kB]
850s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig amd64 2.17.1-3ubuntu1 [180 kB]
850s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB]
851s Get:39 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-6 [119 kB]
851s Get:40 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-lmodern all 2.005-1build1 [4788 kB]
861s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-mathjax all 2.7.9+dfsg-1build1 [2283 kB]
864s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-12ubuntu1 [939 kB]
866s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran-15-dev amd64 15.2.0-12ubuntu1 [973 kB]
868s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-12ubuntu1 [13.6 MB]
890s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-15 amd64 15.2.0-12ubuntu1 [18.1 kB]
890s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4ubuntu1 [1014 B]
890s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 gfortran amd64 4:15.2.0-4ubuntu1 [1172 B]
890s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 icu-devtools amd64 78.2-1ubuntu1 [214 kB]
890s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 javascript-common all 12+nmu1build1 [4864 B]
890s Get:50 http://ftpmaster.internal/ubuntu resolute/main amd64 libio-string-perl all 1.08-4 [11.1 kB]
890s Get:51 http://ftpmaster.internal/ubuntu resolute/universe amd64 liblatex-tounicode-perl all 1.93-1 [29.2 kB]
890s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 libbibtex-parser-perl all 1.93+dfsg-1 [17.4 kB]
890s Get:53 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB]
890s Get:54 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas-dev amd64 3.12.1-7ubuntu1 [235 kB]
890s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libbz2-dev amd64 1.0.8-6build2 [36.2 kB]
890s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 libpixman-1-0 amd64 0.46.4-1 [287 kB]
890s Get:57 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-render0 amd64 1.17.0-2ubuntu1 [16.2 kB]
890s Get:58 http://ftpmaster.internal/ubuntu resolute/main amd64 libxcb-shm0 amd64 1.17.0-2ubuntu1 [5808 B]
890s Get:59 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB]
890s Get:60 http://ftpmaster.internal/ubuntu resolute/main amd64 libcairo2 amd64 1.18.4-3 [579 kB]
891s Get:61 http://ftpmaster.internal/ubuntu resolute/main amd64 libdatrie1 amd64 0.2.14-1 [19.8 kB]
891s Get:62 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2build1 [51.6 kB]
891s Get:63 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate-dev amd64 1.23-2build1 [58.8 kB]
891s Get:64 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB]
891s Get:65 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.2-1 [519 kB]
891s Get:66 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB]
891s Get:67 http://ftpmaster.internal/ubuntu resolute/main amd64 libice6 amd64 2:1.1.1-1build1 [44.0 kB]
891s Get:68 http://ftpmaster.internal/ubuntu resolute/main amd64 libicu-dev amd64 78.2-1ubuntu1 [12.5 MB]
913s Get:69 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu3 [156 kB]
913s Get:70 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8-dev amd64 2.1.5-4ubuntu3 [300 kB]
913s Get:71 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
913s Get:72 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B]
913s Get:73 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B]
913s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-6 [129 kB]
913s Get:75 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-popper.js all 1.16.1+ds-6build1 [53.8 kB]
913s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap4 all 4.6.2+dfsg-1 [532 kB]
913s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-d3 all 3.5.17-4build1 [136 kB]
913s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
913s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-highlight.js all 10.7.3+dfsg-2 [144 kB]
913s Get:80 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB]
913s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2build1 [145 kB]
913s Get:82 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
913s Get:83 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-2 [3946 B]
913s Get:84 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
913s Get:85 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB]
913s Get:86 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-json all 0~20221030+~1.0.8-1build1 [20.6 kB]
913s Get:87 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB]
913s Get:88 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-prettify all 2015.12.04+dfsg-3 [41.4 kB]
913s Get:89 http://ftpmaster.internal/ubuntu resolute/universe amd64 libkpathsea6 amd64 2025.20250727.75242+ds-5build1 [66.0 kB]
913s Get:90 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB]
918s Get:91 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack-dev amd64 3.12.1-7ubuntu1 [5433 kB]
927s Get:92 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB]
927s Get:93 http://ftpmaster.internal/ubuntu resolute/main amd64 liblua5.4-0 amd64 5.4.8-1 [174 kB]
927s Get:94 http://ftpmaster.internal/ubuntu resolute/universe amd64 libmpfi0 amd64 1.5.4+ds-4build1 [36.6 kB]
927s Get:95 http://ftpmaster.internal/ubuntu resolute/main amd64 libncurses-dev amd64 6.6+20251231-1 [389 kB]
927s Get:96 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai-data all 0.1.30-1 [155 kB]
927s Get:97 http://ftpmaster.internal/ubuntu resolute/main amd64 libthai0 amd64 0.1.30-1 [19.2 kB]
928s Get:98 http://ftpmaster.internal/ubuntu resolute/main amd64 libpango-1.0-0 amd64 1.57.0-1 [241 kB]
928s Get:99 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangoft2-1.0-0 amd64 1.57.0-1 [53.3 kB]
928s Get:100 http://ftpmaster.internal/ubuntu resolute/main amd64 libpangocairo-1.0-0 amd64 1.57.0-1 [29.0 kB]
928s Get:101 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper2 amd64 2.2.5-0.3build1 [17.3 kB]
928s Get:102 http://ftpmaster.internal/ubuntu resolute/main amd64 libpaper-utils amd64 2.2.5-0.3build1 [15.6 kB]
928s Get:103 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-16-0 amd64 10.46-1 [243 kB]
928s Get:104 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-32-0 amd64 10.46-1 [230 kB]
928s Get:105 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-posix3 amd64 10.46-1 [7354 B]
928s Get:106 http://ftpmaster.internal/ubuntu resolute/main amd64 libpcre2-dev amd64 10.46-1 [832 kB]
929s Get:107 http://ftpmaster.internal/ubuntu resolute/main amd64 libpkgconf3 amd64 1.8.1-4build1 [32.8 kB]
929s Get:108 http://ftpmaster.internal/ubuntu resolute/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu2 [898 kB]
930s Get:109 http://ftpmaster.internal/ubuntu resolute/main amd64 libpng-dev amd64 1.6.54-1 [273 kB]
930s Get:110 http://ftpmaster.internal/ubuntu resolute/universe amd64 libpotrace0 amd64 1.16-2build2 [17.9 kB]
930s Get:111 http://ftpmaster.internal/ubuntu resolute/universe amd64 libptexenc1 amd64 2025.20250727.75242+ds-5build1 [46.4 kB]
930s Get:112 http://ftpmaster.internal/ubuntu resolute/main amd64 libreadline-dev amd64 8.3-3 [189 kB]
930s Get:113 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB]
930s Get:114 http://ftpmaster.internal/ubuntu resolute/main amd64 libsm6 amd64 2:1.2.6-1build1 [16.9 kB]
930s Get:115 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsynctex2 amd64 2025.20250727.75242+ds-5build1 [62.1 kB]
931s Get:116 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1build1 [1003 kB]
932s Get:117 http://ftpmaster.internal/ubuntu resolute/universe amd64 libteckit0 amd64 2.5.13+ds-1 [431 kB]
932s Get:118 http://ftpmaster.internal/ubuntu resolute/universe amd64 libtexlua53-5 amd64 2025.20250727.75242+ds-5build1 [125 kB]
932s Get:119 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB]
932s Get:120 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB]
932s Get:121 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB]
932s Get:122 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB]
932s Get:123 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B]
932s Get:124 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB]
934s Get:125 http://ftpmaster.internal/ubuntu resolute/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [173 kB]
934s Get:126 http://ftpmaster.internal/ubuntu resolute/main amd64 libxmu6 amd64 2:1.1.3-4 [48.9 kB]
934s Get:127 http://ftpmaster.internal/ubuntu resolute/main amd64 libxpm4 amd64 1:3.5.17-1build3 [37.3 kB]
934s Get:128 http://ftpmaster.internal/ubuntu resolute/main amd64 libxaw7 amd64 2:1.0.16-1build1 [190 kB]
934s Get:129 http://ftpmaster.internal/ubuntu resolute/main amd64 libxi6 amd64 2:1.8.2-2 [33.1 kB]
934s Get:130 http://ftpmaster.internal/ubuntu resolute/main amd64 libzstd-dev amd64 1.5.7+dfsg-3 [376 kB]
934s Get:131 http://ftpmaster.internal/ubuntu resolute/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.2 [30.1 kB]
934s Get:132 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB]
934s Get:133 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
934s Get:134 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-normalize.css all 8.0.1-5.1 [10.4 kB]
934s Get:135 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB]
934s Get:136 http://ftpmaster.internal/ubuntu resolute/universe amd64 pandoc amd64 3.1.11.1+ds-4 [27.2 MB]
986s Get:137 http://ftpmaster.internal/ubuntu resolute/main amd64 zip amd64 3.0-15ubuntu3 [175 kB]
986s Get:138 http://ftpmaster.internal/ubuntu resolute/main amd64 unzip amd64 6.0-29ubuntu1 [180 kB]
986s Get:139 http://ftpmaster.internal/ubuntu resolute/main amd64 xdg-utils all 1.2.1-2ubuntu2 [66.1 kB]
986s Get:140 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-core amd64 4.5.2-1ubuntu2 [28.8 MB]
1063s Get:141 http://ftpmaster.internal/ubuntu resolute/main amd64 liblzma-dev amd64 5.8.2-2 [179 kB]
1063s Get:142 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf-bin amd64 1.8.1-4build1 [21.7 kB]
1063s Get:143 http://ftpmaster.internal/ubuntu resolute/main amd64 pkgconf amd64 1.8.1-4build1 [16.8 kB]
1063s Get:144 http://ftpmaster.internal/ubuntu resolute/main amd64 libtirpc-dev amd64 1.3.6+ds-1 [195 kB]
1063s Get:145 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-base-dev all 4.5.2-1ubuntu2 [1880 B]
1063s Get:146 http://ftpmaster.internal/ubuntu resolute/universe amd64 pkg-r-autopkgtest all 20250812 [6158 B]
1063s Get:147 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB]
1064s Get:148 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB]
1068s Get:149 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB]
1072s Get:150 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-iranges amd64 2.40.1-3 [2309 kB]
1077s Get:151 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-dbi all 1.2.3-1build1 [855 kB]
1080s Get:152 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB]
1080s Get:153 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bit64 amd64 4.6.0-1-4 [491 kB]
1080s Get:154 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB]
1083s Get:155 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB]
1085s Get:156 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB]
1085s Get:157 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB]
1085s Get:158 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
1088s Get:159 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-blob all 1.3.0-1 [54.1 kB]
1088s Get:160 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB]
1088s Get:161 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB]
1088s Get:162 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-memoise all 2.0.1-1build1 [54.5 kB]
1088s Get:163 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgconfig all 2.0.3-2build2 [20.4 kB]
1088s Get:164 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-plogr all 0.2.0-3build2 [15.8 kB]
1088s Get:165 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-cpp11 all 0.5.3-1 [242 kB]
1088s Get:166 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB]
1090s Get:167 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-curl amd64 7.0.0+dfsg-1 [202 kB]
1090s Get:168 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB]
1090s Get:169 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB]
1090s Get:170 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB]
1090s Get:171 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB]
1090s Get:172 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB]
1090s Get:173 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB]
1090s Get:174 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB]
1090s Get:175 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB]
1090s Get:176 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
1090s Get:177 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB]
1091s Get:178 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB]
1091s Get:179 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB]
1117s Get:180 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB]
1125s Get:181 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB]
1125s Get:182 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB]
1150s Get:183 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-3 [183 kB]
1150s Get:184 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB]
1160s Get:185 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xml amd64 3.99-0.20-1 [1751 kB]
1163s Get:186 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xtable all 1:1.8-4-2build1 [691 kB]
1164s Get:187 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-annotate all 1.84.0+dfsg-2 [1870 kB]
1167s Get:188 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-base64enc amd64 0.1-3-3build1 [28.5 kB]
1167s Get:189 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-digest amd64 0.6.39-1 [203 kB]
1167s Get:190 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB]
1167s Get:191 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-evaluate all 1.0.5-1 [117 kB]
1168s Get:192 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-xfun amd64 0.55+dfsg-1 [587 kB]
1169s Get:193 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB]
1169s Get:194 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB]
1169s Get:195 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-mathjax all 2.7.9+dfsg-1build1 [6017 kB]
1179s Get:196 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-knitr all 1.51+dfsg-1 [847 kB]
1181s Get:197 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-5 [13.7 kB]
1181s Get:198 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB]
1181s Get:199 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rappdirs amd64 0.3.3-1build1 [49.3 kB]
1181s Get:200 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB]
1183s Get:201 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bslib all 0.9.0+dfsg-3build1 [4560 kB]
1191s Get:202 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB]
1193s Get:203 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-tinytex all 0.58-1 [148 kB]
1193s Get:204 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-modernizr all 3.13.0-0.1build1 [100 kB]
1194s Get:205 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-littler amd64 0.3.22-1 [85.5 kB]
1194s Get:206 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
1194s Get:207 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcpp amd64 1.1.0-1 [2021 kB]
1197s Get:208 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB]
1197s Get:209 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
1197s Get:210 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB]
1197s Get:211 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB]
1197s Get:212 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB]
1197s Get:213 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
1197s Get:214 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB]
1197s Get:215 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
1197s Get:216 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB]
1203s Get:217 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rmarkdown all 2.30+dfsg-1 [1501 kB]
1206s Get:218 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB]
1209s Get:219 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB]
1209s Get:220 http://ftpmaster.internal/ubuntu resolute/universe amd64 tex-common all 6.20 [30.0 kB]
1209s Get:221 http://ftpmaster.internal/ubuntu resolute/main amd64 t1utils amd64 1.41-4build4 [62.7 kB]
1209s Get:222 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-binaries amd64 2025.20250727.75242+ds-5build1 [8747 kB]
1228s Get:223 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-base all 2025.20260124-1 [22.8 MB]
1286s Get:224 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-latex-base all 2025.20260124-1 [1321 kB]
1288s Get:225 http://ftpmaster.internal/ubuntu resolute/universe amd64 texlive-bibtex-extra all 2025.20260124-1 [80.6 MB]
1465s Get:226 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB]
1465s Get:227 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB]
1465s Get:228 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 r-cran-lattice amd64 0.22-9-1 [1399 kB]
1469s Get:229 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build2 [54.0 kB]
1469s Get:230 http://ftpmaster.internal/ubuntu resolute/universe amd64 r-bioc-geneplotter all 1.84.0+dfsg-2 [1508 kB]
1473s Preconfiguring packages ...
1473s Fetched 391 MB in 13min 6s (497 kB/s)
1473s Selecting previously unselected package libc-dev-bin.
1473s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 125264 files and directories currently installed.)
1473s Preparing to unpack .../000-libc-dev-bin_2.42-2ubuntu4_amd64.deb ...
1473s Unpacking libc-dev-bin (2.42-2ubuntu4) ...
1473s Selecting previously unselected package linux-libc-dev:amd64.
1473s Preparing to unpack .../001-linux-libc-dev_6.19.0-3.3_amd64.deb ...
1473s Unpacking linux-libc-dev:amd64 (6.19.0-3.3) ...
1473s Selecting previously unselected package libcrypt-dev:amd64.
1473s Preparing to unpack .../002-libcrypt-dev_1%3a4.5.1-1_amd64.deb ...
1473s Unpacking libcrypt-dev:amd64 (1:4.5.1-1) ...
1473s Selecting previously unselected package rpcsvc-proto.
1473s Preparing to unpack .../003-rpcsvc-proto_1.4.3-1build1_amd64.deb ...
1473s Unpacking rpcsvc-proto (1.4.3-1build1) ...
1473s Selecting previously unselected package libc6-dev:amd64.
1473s Preparing to unpack .../004-libc6-dev_2.42-2ubuntu4_amd64.deb ...
1473s Unpacking libc6-dev:amd64 (2.42-2ubuntu4) ...
1473s Selecting previously unselected package libisl23:amd64.
1473s Preparing to unpack .../005-libisl23_0.27-1build1_amd64.deb ...
1473s Unpacking libisl23:amd64 (0.27-1build1) ...
1473s Selecting previously unselected package libmpc3:amd64.
1473s Preparing to unpack .../006-libmpc3_1.3.1-2_amd64.deb ...
1473s Unpacking libmpc3:amd64 (1.3.1-2) ...
1473s Selecting previously unselected package cpp-15-x86-64-linux-gnu.
1473s Preparing to unpack .../007-cpp-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
1473s Unpacking cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
1473s Selecting previously unselected package cpp-15.
1473s Preparing to unpack .../008-cpp-15_15.2.0-12ubuntu1_amd64.deb ...
1473s Unpacking cpp-15 (15.2.0-12ubuntu1) ...
1474s Selecting previously unselected package cpp-x86-64-linux-gnu.
1474s Preparing to unpack .../009-cpp-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
1474s Unpacking cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
1474s Selecting previously unselected package cpp.
1474s Preparing to unpack .../010-cpp_4%3a15.2.0-4ubuntu1_amd64.deb ...
1474s Unpacking cpp (4:15.2.0-4ubuntu1) ...
1474s Selecting previously unselected package libcc1-0:amd64.
1474s Preparing to unpack .../011-libcc1-0_15.2.0-12ubuntu1_amd64.deb ...
1474s Unpacking libcc1-0:amd64 (15.2.0-12ubuntu1) ...
1474s Selecting previously unselected package libgomp1:amd64.
1474s Preparing to unpack .../012-libgomp1_15.2.0-12ubuntu1_amd64.deb ...
1474s Unpacking libgomp1:amd64 (15.2.0-12ubuntu1) ...
1474s Selecting previously unselected package libitm1:amd64.
1474s Preparing to unpack .../013-libitm1_15.2.0-12ubuntu1_amd64.deb ...
1474s Unpacking libitm1:amd64 (15.2.0-12ubuntu1) ...
1474s Selecting previously unselected package libasan8:amd64.
1474s Preparing to unpack .../014-libasan8_15.2.0-12ubuntu1_amd64.deb ...
1474s Unpacking libasan8:amd64 (15.2.0-12ubuntu1) ...
1474s Selecting previously unselected package liblsan0:amd64.
1474s Preparing to unpack .../015-liblsan0_15.2.0-12ubuntu1_amd64.deb ...
1474s Unpacking liblsan0:amd64 (15.2.0-12ubuntu1) ...
1474s Selecting previously unselected package libtsan2:amd64.
1474s Preparing to unpack .../016-libtsan2_15.2.0-12ubuntu1_amd64.deb ...
1474s Unpacking libtsan2:amd64 (15.2.0-12ubuntu1) ...
1474s Selecting previously unselected package libubsan1:amd64.
1474s Preparing to unpack .../017-libubsan1_15.2.0-12ubuntu1_amd64.deb ...
1474s Unpacking libubsan1:amd64 (15.2.0-12ubuntu1) ...
1474s Selecting previously unselected package libhwasan0:amd64.
1474s Preparing to unpack .../018-libhwasan0_15.2.0-12ubuntu1_amd64.deb ...
1474s Unpacking libhwasan0:amd64 (15.2.0-12ubuntu1) ...
1474s Selecting previously unselected package libquadmath0:amd64.
1474s Preparing to unpack .../019-libquadmath0_15.2.0-12ubuntu1_amd64.deb ...
1474s Unpacking libquadmath0:amd64 (15.2.0-12ubuntu1) ...
1474s Selecting previously unselected package libgcc-15-dev:amd64.
1474s Preparing to unpack .../020-libgcc-15-dev_15.2.0-12ubuntu1_amd64.deb ...
1474s Unpacking libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ...
1474s Selecting previously unselected package gcc-15-x86-64-linux-gnu.
1474s Preparing to unpack .../021-gcc-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
1474s Unpacking gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
1474s Selecting previously unselected package gcc-15.
1474s Preparing to unpack .../022-gcc-15_15.2.0-12ubuntu1_amd64.deb ...
1474s Unpacking gcc-15 (15.2.0-12ubuntu1) ...
1474s Selecting previously unselected package gcc-x86-64-linux-gnu.
1474s Preparing to unpack .../023-gcc-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
1474s Unpacking gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
1474s Selecting previously unselected package gcc.
1474s Preparing to unpack .../024-gcc_4%3a15.2.0-4ubuntu1_amd64.deb ...
1474s Unpacking gcc (4:15.2.0-4ubuntu1) ...
1474s Selecting previously unselected package libstdc++-15-dev:amd64.
1474s Preparing to unpack .../025-libstdc++-15-dev_15.2.0-12ubuntu1_amd64.deb ...
1474s Unpacking libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ...
1474s Selecting previously unselected package g++-15-x86-64-linux-gnu.
1474s Preparing to unpack .../026-g++-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
1474s Unpacking g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
1474s Selecting previously unselected package g++-15.
1474s Preparing to unpack .../027-g++-15_15.2.0-12ubuntu1_amd64.deb ...
1474s Unpacking g++-15 (15.2.0-12ubuntu1) ...
1474s Selecting previously unselected package g++-x86-64-linux-gnu.
1474s Preparing to unpack .../028-g++-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
1474s Unpacking g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
1474s Selecting previously unselected package g++.
1474s Preparing to unpack .../029-g++_4%3a15.2.0-4ubuntu1_amd64.deb ...
1474s Unpacking g++ (4:15.2.0-4ubuntu1) ...
1474s Selecting previously unselected package build-essential.
1474s Preparing to unpack .../030-build-essential_12.12ubuntu2_amd64.deb ...
1474s Unpacking build-essential (12.12ubuntu2) ...
1474s Selecting previously unselected package dctrl-tools.
1474s Preparing to unpack .../031-dctrl-tools_2.24-3build4_amd64.deb ...
1474s Unpacking dctrl-tools (2.24-3build4) ...
1474s Selecting previously unselected package fonts-dejavu-mono.
1474s Preparing to unpack .../032-fonts-dejavu-mono_2.37-8build1_all.deb ...
1474s Unpacking fonts-dejavu-mono (2.37-8build1) ...
1474s Selecting previously unselected package fonts-dejavu-core.
1474s Preparing to unpack .../033-fonts-dejavu-core_2.37-8build1_all.deb ...
1474s Unpacking fonts-dejavu-core (2.37-8build1) ...
1474s Selecting previously unselected package fontconfig-config.
1474s Preparing to unpack .../034-fontconfig-config_2.17.1-3ubuntu1_amd64.deb ...
1475s Unpacking fontconfig-config (2.17.1-3ubuntu1) ...
1475s Selecting previously unselected package libfontconfig1:amd64.
1475s Preparing to unpack .../035-libfontconfig1_2.17.1-3ubuntu1_amd64.deb ...
1475s Unpacking libfontconfig1:amd64 (2.17.1-3ubuntu1) ...
1475s Selecting previously unselected package fontconfig.
1475s Preparing to unpack .../036-fontconfig_2.17.1-3ubuntu1_amd64.deb ...
1475s Unpacking fontconfig (2.17.1-3ubuntu1) ...
1475s Selecting previously unselected package fonts-font-awesome.
1475s Preparing to unpack .../037-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ...
1475s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ...
1475s Selecting previously unselected package fonts-glyphicons-halflings.
1475s Preparing to unpack .../038-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-6_all.deb ...
1475s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ...
1475s Selecting previously unselected package fonts-lmodern.
1475s Preparing to unpack .../039-fonts-lmodern_2.005-1build1_all.deb ...
1475s Unpacking fonts-lmodern (2.005-1build1) ...
1475s Selecting previously unselected package fonts-mathjax.
1475s Preparing to unpack .../040-fonts-mathjax_2.7.9+dfsg-1build1_all.deb ...
1475s Unpacking fonts-mathjax (2.7.9+dfsg-1build1) ...
1475s Selecting previously unselected package libgfortran5:amd64.
1475s Preparing to unpack .../041-libgfortran5_15.2.0-12ubuntu1_amd64.deb ...
1475s Unpacking libgfortran5:amd64 (15.2.0-12ubuntu1) ...
1475s Selecting previously unselected package libgfortran-15-dev:amd64.
1475s Preparing to unpack .../042-libgfortran-15-dev_15.2.0-12ubuntu1_amd64.deb ...
1475s Unpacking libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ...
1475s Selecting previously unselected package gfortran-15-x86-64-linux-gnu.
1475s Preparing to unpack .../043-gfortran-15-x86-64-linux-gnu_15.2.0-12ubuntu1_amd64.deb ...
1475s Unpacking gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
1475s Selecting previously unselected package gfortran-15.
1475s Preparing to unpack .../044-gfortran-15_15.2.0-12ubuntu1_amd64.deb ...
1475s Unpacking gfortran-15 (15.2.0-12ubuntu1) ...
1475s Selecting previously unselected package gfortran-x86-64-linux-gnu.
1475s Preparing to unpack .../045-gfortran-x86-64-linux-gnu_4%3a15.2.0-4ubuntu1_amd64.deb ...
1475s Unpacking gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
1475s Selecting previously unselected package gfortran.
1475s Preparing to unpack .../046-gfortran_4%3a15.2.0-4ubuntu1_amd64.deb ...
1475s Unpacking gfortran (4:15.2.0-4ubuntu1) ...
1475s Selecting previously unselected package icu-devtools.
1475s Preparing to unpack .../047-icu-devtools_78.2-1ubuntu1_amd64.deb ...
1475s Unpacking icu-devtools (78.2-1ubuntu1) ...
1475s Selecting previously unselected package javascript-common.
1475s Preparing to unpack .../048-javascript-common_12+nmu1build1_all.deb ...
1475s Unpacking javascript-common (12+nmu1build1) ...
1475s Selecting previously unselected package libio-string-perl.
1475s Preparing to unpack .../049-libio-string-perl_1.08-4_all.deb ...
1475s Unpacking libio-string-perl (1.08-4) ...
1475s Selecting previously unselected package liblatex-tounicode-perl.
1475s Preparing to unpack .../050-liblatex-tounicode-perl_1.93-1_all.deb ...
1475s Unpacking liblatex-tounicode-perl (1.93-1) ...
1475s Selecting previously unselected package libbibtex-parser-perl.
1475s Preparing to unpack .../051-libbibtex-parser-perl_1.93+dfsg-1_all.deb ...
1475s Unpacking libbibtex-parser-perl (1.93+dfsg-1) ...
1475s Selecting previously unselected package libblas3:amd64.
1475s Preparing to unpack .../052-libblas3_3.12.1-7ubuntu1_amd64.deb ...
1475s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ...
1475s Selecting previously unselected package libblas-dev:amd64.
1475s Preparing to unpack .../053-libblas-dev_3.12.1-7ubuntu1_amd64.deb ...
1475s Unpacking libblas-dev:amd64 (3.12.1-7ubuntu1) ...
1475s Selecting previously unselected package libbz2-dev:amd64.
1475s Preparing to unpack .../054-libbz2-dev_1.0.8-6build2_amd64.deb ...
1475s Unpacking libbz2-dev:amd64 (1.0.8-6build2) ...
1475s Selecting previously unselected package libpixman-1-0:amd64.
1475s Preparing to unpack .../055-libpixman-1-0_0.46.4-1_amd64.deb ...
1475s Unpacking libpixman-1-0:amd64 (0.46.4-1) ...
1475s Selecting previously unselected package libxcb-render0:amd64.
1475s Preparing to unpack .../056-libxcb-render0_1.17.0-2ubuntu1_amd64.deb ...
1475s Unpacking libxcb-render0:amd64 (1.17.0-2ubuntu1) ...
1475s Selecting previously unselected package libxcb-shm0:amd64.
1475s Preparing to unpack .../057-libxcb-shm0_1.17.0-2ubuntu1_amd64.deb ...
1475s Unpacking libxcb-shm0:amd64 (1.17.0-2ubuntu1) ...
1475s Selecting previously unselected package libxrender1:amd64.
1475s Preparing to unpack .../058-libxrender1_1%3a0.9.12-1_amd64.deb ...
1475s Unpacking libxrender1:amd64 (1:0.9.12-1) ...
1475s Selecting previously unselected package libcairo2:amd64.
1475s Preparing to unpack .../059-libcairo2_1.18.4-3_amd64.deb ...
1475s Unpacking libcairo2:amd64 (1.18.4-3) ...
1475s Selecting previously unselected package libdatrie1:amd64.
1475s Preparing to unpack .../060-libdatrie1_0.2.14-1_amd64.deb ...
1475s Unpacking libdatrie1:amd64 (0.2.14-1) ...
1475s Selecting previously unselected package libdeflate0:amd64.
1475s Preparing to unpack .../061-libdeflate0_1.23-2build1_amd64.deb ...
1475s Unpacking libdeflate0:amd64 (1.23-2build1) ...
1475s Selecting previously unselected package libdeflate-dev:amd64.
1475s Preparing to unpack .../062-libdeflate-dev_1.23-2build1_amd64.deb ...
1475s Unpacking libdeflate-dev:amd64 (1.23-2build1) ...
1475s Selecting previously unselected package libgraphite2-3:amd64.
1475s Preparing to unpack .../063-libgraphite2-3_1.3.14-11ubuntu1_amd64.deb ...
1475s Unpacking libgraphite2-3:amd64 (1.3.14-11ubuntu1) ...
1475s Selecting previously unselected package libharfbuzz0b:amd64.
1475s Preparing to unpack .../064-libharfbuzz0b_12.3.2-1_amd64.deb ...
1475s Unpacking libharfbuzz0b:amd64 (12.3.2-1) ...
1475s Selecting previously unselected package x11-common.
1475s Preparing to unpack .../065-x11-common_1%3a7.7+24ubuntu1_all.deb ...
1475s Unpacking x11-common (1:7.7+24ubuntu1) ...
1475s Selecting previously unselected package libice6:amd64.
1475s Preparing to unpack .../066-libice6_2%3a1.1.1-1build1_amd64.deb ...
1475s Unpacking libice6:amd64 (2:1.1.1-1build1) ...
1475s Selecting previously unselected package libicu-dev:amd64.
1475s Preparing to unpack .../067-libicu-dev_78.2-1ubuntu1_amd64.deb ...
1475s Unpacking libicu-dev:amd64 (78.2-1ubuntu1) ...
1475s Selecting previously unselected package libjpeg-turbo8:amd64.
1475s Preparing to unpack .../068-libjpeg-turbo8_2.1.5-4ubuntu3_amd64.deb ...
1475s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu3) ...
1475s Selecting previously unselected package libjpeg-turbo8-dev:amd64.
1475s Preparing to unpack .../069-libjpeg-turbo8-dev_2.1.5-4ubuntu3_amd64.deb ...
1475s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-4ubuntu3) ...
1475s Selecting previously unselected package libjpeg8:amd64.
1476s Preparing to unpack .../070-libjpeg8_8c-2ubuntu11_amd64.deb ...
1476s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ...
1476s Selecting previously unselected package libjpeg8-dev:amd64.
1476s Preparing to unpack .../071-libjpeg8-dev_8c-2ubuntu11_amd64.deb ...
1476s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ...
1476s Selecting previously unselected package libjpeg-dev:amd64.
1476s Preparing to unpack .../072-libjpeg-dev_8c-2ubuntu11_amd64.deb ...
1476s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ...
1476s Selecting previously unselected package libjs-bootstrap.
1476s Preparing to unpack .../073-libjs-bootstrap_3.4.1+dfsg-6_all.deb ...
1476s Unpacking libjs-bootstrap (3.4.1+dfsg-6) ...
1476s Selecting previously unselected package libjs-popper.js.
1476s Preparing to unpack .../074-libjs-popper.js_1.16.1+ds-6build1_all.deb ...
1476s Unpacking libjs-popper.js (1.16.1+ds-6build1) ...
1476s Selecting previously unselected package libjs-bootstrap4.
1476s Preparing to unpack .../075-libjs-bootstrap4_4.6.2+dfsg-1_all.deb ...
1476s Unpacking libjs-bootstrap4 (4.6.2+dfsg-1) ...
1476s Selecting previously unselected package libjs-d3.
1476s Preparing to unpack .../076-libjs-d3_3.5.17-4build1_all.deb ...
1476s Unpacking libjs-d3 (3.5.17-4build1) ...
1476s Selecting previously unselected package libjs-es5-shim.
1476s Preparing to unpack .../077-libjs-es5-shim_4.6.7-2_all.deb ...
1476s Unpacking libjs-es5-shim (4.6.7-2) ...
1476s Selecting previously unselected package libjs-highlight.js.
1476s Preparing to unpack .../078-libjs-highlight.js_10.7.3+dfsg-2_all.deb ...
1476s Unpacking libjs-highlight.js (10.7.3+dfsg-2) ...
1476s Selecting previously unselected package libjs-jquery.
1476s Preparing to unpack .../079-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ...
1476s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ...
1476s Selecting previously unselected package libjs-jquery-datatables.
1476s Preparing to unpack .../080-libjs-jquery-datatables_1.11.5+dfsg-2build1_all.deb ...
1476s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2build1) ...
1476s Selecting previously unselected package libjs-sifter.js.
1476s Preparing to unpack .../081-libjs-sifter.js_0.6.0+dfsg-3_all.deb ...
1476s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ...
1476s Selecting previously unselected package libjs-microplugin.js.
1476s Preparing to unpack .../082-libjs-microplugin.js_0.0.3+dfsg-2_all.deb ...
1476s Unpacking libjs-microplugin.js (0.0.3+dfsg-2) ...
1476s Selecting previously unselected package libjs-jquery-selectize.js.
1476s Preparing to unpack .../083-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ...
1476s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ...
1476s Selecting previously unselected package libjs-jquery-ui.
1476s Preparing to unpack .../084-libjs-jquery-ui_1.13.2+dfsg-1build1_all.deb ...
1476s Unpacking libjs-jquery-ui (1.13.2+dfsg-1build1) ...
1476s Selecting previously unselected package libjs-json.
1476s Preparing to unpack .../085-libjs-json_0~20221030+~1.0.8-1build1_all.deb ...
1476s Unpacking libjs-json (0~20221030+~1.0.8-1build1) ...
1476s Selecting previously unselected package libjs-lunr.
1476s Preparing to unpack .../086-libjs-lunr_2.3.9~dfsg-2_all.deb ...
1476s Unpacking libjs-lunr (2.3.9~dfsg-2) ...
1476s Selecting previously unselected package libjs-prettify.
1476s Preparing to unpack .../087-libjs-prettify_2015.12.04+dfsg-3_all.deb ...
1476s Unpacking libjs-prettify (2015.12.04+dfsg-3) ...
1476s Selecting previously unselected package libkpathsea6:amd64.
1476s Preparing to unpack .../088-libkpathsea6_2025.20250727.75242+ds-5build1_amd64.deb ...
1476s Unpacking libkpathsea6:amd64 (2025.20250727.75242+ds-5build1) ...
1476s Selecting previously unselected package liblapack3:amd64.
1476s Preparing to unpack .../089-liblapack3_3.12.1-7ubuntu1_amd64.deb ...
1476s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ...
1476s Selecting previously unselected package liblapack-dev:amd64.
1476s Preparing to unpack .../090-liblapack-dev_3.12.1-7ubuntu1_amd64.deb ...
1476s Unpacking liblapack-dev:amd64 (3.12.1-7ubuntu1) ...
1476s Selecting previously unselected package liblerc4:amd64.
1476s Preparing to unpack .../091-liblerc4_4.0.0+ds-5ubuntu2_amd64.deb ...
1476s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu2) ...
1476s Selecting previously unselected package liblua5.4-0:amd64.
1476s Preparing to unpack .../092-liblua5.4-0_5.4.8-1_amd64.deb ...
1476s Unpacking liblua5.4-0:amd64 (5.4.8-1) ...
1476s Selecting previously unselected package libmpfi0:amd64.
1476s Preparing to unpack .../093-libmpfi0_1.5.4+ds-4build1_amd64.deb ...
1476s Unpacking libmpfi0:amd64 (1.5.4+ds-4build1) ...
1476s Selecting previously unselected package libncurses-dev:amd64.
1476s Preparing to unpack .../094-libncurses-dev_6.6+20251231-1_amd64.deb ...
1476s Unpacking libncurses-dev:amd64 (6.6+20251231-1) ...
1476s Selecting previously unselected package libthai-data.
1476s Preparing to unpack .../095-libthai-data_0.1.30-1_all.deb ...
1476s Unpacking libthai-data (0.1.30-1) ...
1476s Selecting previously unselected package libthai0:amd64.
1476s Preparing to unpack .../096-libthai0_0.1.30-1_amd64.deb ...
1476s Unpacking libthai0:amd64 (0.1.30-1) ...
1476s Selecting previously unselected package libpango-1.0-0:amd64.
1476s Preparing to unpack .../097-libpango-1.0-0_1.57.0-1_amd64.deb ...
1476s Unpacking libpango-1.0-0:amd64 (1.57.0-1) ...
1476s Selecting previously unselected package libpangoft2-1.0-0:amd64.
1476s Preparing to unpack .../098-libpangoft2-1.0-0_1.57.0-1_amd64.deb ...
1476s Unpacking libpangoft2-1.0-0:amd64 (1.57.0-1) ...
1476s Selecting previously unselected package libpangocairo-1.0-0:amd64.
1476s Preparing to unpack .../099-libpangocairo-1.0-0_1.57.0-1_amd64.deb ...
1476s Unpacking libpangocairo-1.0-0:amd64 (1.57.0-1) ...
1476s Selecting previously unselected package libpaper2:amd64.
1476s Preparing to unpack .../100-libpaper2_2.2.5-0.3build1_amd64.deb ...
1476s Unpacking libpaper2:amd64 (2.2.5-0.3build1) ...
1476s Selecting previously unselected package libpaper-utils.
1476s Preparing to unpack .../101-libpaper-utils_2.2.5-0.3build1_amd64.deb ...
1476s Unpacking libpaper-utils (2.2.5-0.3build1) ...
1476s Selecting previously unselected package libpcre2-16-0:amd64.
1476s Preparing to unpack .../102-libpcre2-16-0_10.46-1_amd64.deb ...
1476s Unpacking libpcre2-16-0:amd64 (10.46-1) ...
1476s Selecting previously unselected package libpcre2-32-0:amd64.
1476s Preparing to unpack .../103-libpcre2-32-0_10.46-1_amd64.deb ...
1476s Unpacking libpcre2-32-0:amd64 (10.46-1) ...
1476s Selecting previously unselected package libpcre2-posix3:amd64.
1476s Preparing to unpack .../104-libpcre2-posix3_10.46-1_amd64.deb ...
1476s Unpacking libpcre2-posix3:amd64 (10.46-1) ...
1476s Selecting previously unselected package libpcre2-dev:amd64.
1476s Preparing to unpack .../105-libpcre2-dev_10.46-1_amd64.deb ...
1476s Unpacking libpcre2-dev:amd64 (10.46-1) ...
1476s Selecting previously unselected package libpkgconf3:amd64.
1476s Preparing to unpack .../106-libpkgconf3_1.8.1-4build1_amd64.deb ...
1476s Unpacking libpkgconf3:amd64 (1.8.1-4build1) ...
1476s Selecting previously unselected package zlib1g-dev:amd64.
1476s Preparing to unpack .../107-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu2_amd64.deb ...
1476s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ...
1476s Selecting previously unselected package libpng-dev:amd64.
1476s Preparing to unpack .../108-libpng-dev_1.6.54-1_amd64.deb ...
1476s Unpacking libpng-dev:amd64 (1.6.54-1) ...
1476s Selecting previously unselected package libpotrace0:amd64.
1476s Preparing to unpack .../109-libpotrace0_1.16-2build2_amd64.deb ...
1476s Unpacking libpotrace0:amd64 (1.16-2build2) ...
1476s Selecting previously unselected package libptexenc1:amd64.
1476s Preparing to unpack .../110-libptexenc1_2025.20250727.75242+ds-5build1_amd64.deb ...
1476s Unpacking libptexenc1:amd64 (2025.20250727.75242+ds-5build1) ...
1476s Selecting previously unselected package libreadline-dev:amd64.
1476s Preparing to unpack .../111-libreadline-dev_8.3-3_amd64.deb ...
1476s Unpacking libreadline-dev:amd64 (8.3-3) ...
1476s Selecting previously unselected package libsharpyuv0:amd64.
1476s Preparing to unpack .../112-libsharpyuv0_1.5.0-0.1build1_amd64.deb ...
1476s Unpacking libsharpyuv0:amd64 (1.5.0-0.1build1) ...
1476s Selecting previously unselected package libsm6:amd64.
1476s Preparing to unpack .../113-libsm6_2%3a1.2.6-1build1_amd64.deb ...
1476s Unpacking libsm6:amd64 (2:1.2.6-1build1) ...
1476s Selecting previously unselected package libsynctex2:amd64.
1476s Preparing to unpack .../114-libsynctex2_2025.20250727.75242+ds-5build1_amd64.deb ...
1476s Unpacking libsynctex2:amd64 (2025.20250727.75242+ds-5build1) ...
1476s Selecting previously unselected package libtcl8.6:amd64.
1476s Preparing to unpack .../115-libtcl8.6_8.6.17+dfsg-1build1_amd64.deb ...
1476s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1build1) ...
1476s Selecting previously unselected package libteckit0:amd64.
1476s Preparing to unpack .../116-libteckit0_2.5.13+ds-1_amd64.deb ...
1476s Unpacking libteckit0:amd64 (2.5.13+ds-1) ...
1476s Selecting previously unselected package libtexlua53-5:amd64.
1476s Preparing to unpack .../117-libtexlua53-5_2025.20250727.75242+ds-5build1_amd64.deb ...
1476s Unpacking libtexlua53-5:amd64 (2025.20250727.75242+ds-5build1) ...
1476s Selecting previously unselected package libjbig0:amd64.
1476s Preparing to unpack .../118-libjbig0_2.1-6.1ubuntu3_amd64.deb ...
1476s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ...
1477s Selecting previously unselected package libwebp7:amd64.
1477s Preparing to unpack .../119-libwebp7_1.5.0-0.1build1_amd64.deb ...
1477s Unpacking libwebp7:amd64 (1.5.0-0.1build1) ...
1477s Selecting previously unselected package libtiff6:amd64.
1477s Preparing to unpack .../120-libtiff6_4.7.0-3ubuntu3_amd64.deb ...
1477s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ...
1477s Selecting previously unselected package libxft2:amd64.
1477s Preparing to unpack .../121-libxft2_2.3.6-1build2_amd64.deb ...
1477s Unpacking libxft2:amd64 (2.3.6-1build2) ...
1477s Selecting previously unselected package libxss1:amd64.
1477s Preparing to unpack .../122-libxss1_1%3a1.2.3-1build4_amd64.deb ...
1477s Unpacking libxss1:amd64 (1:1.2.3-1build4) ...
1477s Selecting previously unselected package libtk8.6:amd64.
1477s Preparing to unpack .../123-libtk8.6_8.6.17-1_amd64.deb ...
1477s Unpacking libtk8.6:amd64 (8.6.17-1) ...
1477s Selecting previously unselected package libxt6t64:amd64.
1477s Preparing to unpack .../124-libxt6t64_1%3a1.2.1-1.3_amd64.deb ...
1477s Unpacking libxt6t64:amd64 (1:1.2.1-1.3) ...
1477s Selecting previously unselected package libxmu6:amd64.
1477s Preparing to unpack .../125-libxmu6_2%3a1.1.3-4_amd64.deb ...
1477s Unpacking libxmu6:amd64 (2:1.1.3-4) ...
1477s Selecting previously unselected package libxpm4:amd64.
1477s Preparing to unpack .../126-libxpm4_1%3a3.5.17-1build3_amd64.deb ...
1477s Unpacking libxpm4:amd64 (1:3.5.17-1build3) ...
1477s Selecting previously unselected package libxaw7:amd64.
1477s Preparing to unpack .../127-libxaw7_2%3a1.0.16-1build1_amd64.deb ...
1477s Unpacking libxaw7:amd64 (2:1.0.16-1build1) ...
1477s Selecting previously unselected package libxi6:amd64.
1477s Preparing to unpack .../128-libxi6_2%3a1.8.2-2_amd64.deb ...
1477s Unpacking libxi6:amd64 (2:1.8.2-2) ...
1477s Selecting previously unselected package libzstd-dev:amd64.
1477s Preparing to unpack .../129-libzstd-dev_1.5.7+dfsg-3_amd64.deb ...
1477s Unpacking libzstd-dev:amd64 (1.5.7+dfsg-3) ...
1477s Selecting previously unselected package libzzip-0-13t64:amd64.
1477s Preparing to unpack .../130-libzzip-0-13t64_0.13.78+dfsg.1-0.2_amd64.deb ...
1477s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.2) ...
1477s Selecting previously unselected package node-bootstrap-sass.
1477s Preparing to unpack .../131-node-bootstrap-sass_3.4.3-2_all.deb ...
1477s Unpacking node-bootstrap-sass (3.4.3-2) ...
1477s Selecting previously unselected package node-html5shiv.
1477s Preparing to unpack .../132-node-html5shiv_3.7.3+dfsg-5_all.deb ...
1477s Unpacking node-html5shiv (3.7.3+dfsg-5) ...
1477s Selecting previously unselected package node-normalize.css.
1477s Preparing to unpack .../133-node-normalize.css_8.0.1-5.1_all.deb ...
1477s Unpacking node-normalize.css (8.0.1-5.1) ...
1477s Selecting previously unselected package pandoc-data.
1477s Preparing to unpack .../134-pandoc-data_3.1.11.1-3build1_all.deb ...
1477s Unpacking pandoc-data (3.1.11.1-3build1) ...
1477s Selecting previously unselected package pandoc.
1477s Preparing to unpack .../135-pandoc_3.1.11.1+ds-4_amd64.deb ...
1477s Unpacking pandoc (3.1.11.1+ds-4) ...
1477s Selecting previously unselected package zip.
1477s Preparing to unpack .../136-zip_3.0-15ubuntu3_amd64.deb ...
1477s Unpacking zip (3.0-15ubuntu3) ...
1477s Selecting previously unselected package unzip.
1477s Preparing to unpack .../137-unzip_6.0-29ubuntu1_amd64.deb ...
1477s Unpacking unzip (6.0-29ubuntu1) ...
1477s Selecting previously unselected package xdg-utils.
1477s Preparing to unpack .../138-xdg-utils_1.2.1-2ubuntu2_all.deb ...
1477s Unpacking xdg-utils (1.2.1-2ubuntu2) ...
1477s Selecting previously unselected package r-base-core.
1477s Preparing to unpack .../139-r-base-core_4.5.2-1ubuntu2_amd64.deb ...
1477s Unpacking r-base-core (4.5.2-1ubuntu2) ...
1478s Selecting previously unselected package liblzma-dev:amd64.
1478s Preparing to unpack .../140-liblzma-dev_5.8.2-2_amd64.deb ...
1478s Unpacking liblzma-dev:amd64 (5.8.2-2) ...
1478s Selecting previously unselected package pkgconf-bin.
1478s Preparing to unpack .../141-pkgconf-bin_1.8.1-4build1_amd64.deb ...
1478s Unpacking pkgconf-bin (1.8.1-4build1) ...
1478s Selecting previously unselected package pkgconf:amd64.
1478s Preparing to unpack .../142-pkgconf_1.8.1-4build1_amd64.deb ...
1478s Unpacking pkgconf:amd64 (1.8.1-4build1) ...
1478s Selecting previously unselected package libtirpc-dev:amd64.
1478s Preparing to unpack .../143-libtirpc-dev_1.3.6+ds-1_amd64.deb ...
1478s Unpacking libtirpc-dev:amd64 (1.3.6+ds-1) ...
1478s Selecting previously unselected package r-base-dev.
1478s Preparing to unpack .../144-r-base-dev_4.5.2-1ubuntu2_all.deb ...
1478s Unpacking r-base-dev (4.5.2-1ubuntu2) ...
1478s Selecting previously unselected package pkg-r-autopkgtest.
1478s Preparing to unpack .../145-pkg-r-autopkgtest_20250812_all.deb ...
1478s Unpacking pkg-r-autopkgtest (20250812) ...
1478s Selecting previously unselected package r-bioc-biocgenerics.
1478s Preparing to unpack .../146-r-bioc-biocgenerics_0.52.0-2_all.deb ...
1478s Unpacking r-bioc-biocgenerics (0.52.0-2) ...
1478s Selecting previously unselected package r-bioc-biobase.
1478s Preparing to unpack .../147-r-bioc-biobase_2.66.0-2_amd64.deb ...
1478s Unpacking r-bioc-biobase (2.66.0-2) ...
1478s Selecting previously unselected package r-bioc-s4vectors.
1478s Preparing to unpack .../148-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ...
1478s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ...
1478s Selecting previously unselected package r-bioc-iranges.
1478s Preparing to unpack .../149-r-bioc-iranges_2.40.1-3_amd64.deb ...
1478s Unpacking r-bioc-iranges (2.40.1-3) ...
1478s Selecting previously unselected package r-cran-dbi.
1478s Preparing to unpack .../150-r-cran-dbi_1.2.3-1build1_all.deb ...
1478s Unpacking r-cran-dbi (1.2.3-1build1) ...
1478s Selecting previously unselected package r-cran-bit.
1478s Preparing to unpack .../151-r-cran-bit_4.6.0+dfsg-1_amd64.deb ...
1478s Unpacking r-cran-bit (4.6.0+dfsg-1) ...
1478s Selecting previously unselected package r-cran-bit64.
1478s Preparing to unpack .../152-r-cran-bit64_4.6.0-1-4_amd64.deb ...
1478s Unpacking r-cran-bit64 (4.6.0-1-4) ...
1478s Selecting previously unselected package r-cran-rlang.
1478s Preparing to unpack .../153-r-cran-rlang_1.1.5-3_amd64.deb ...
1478s Unpacking r-cran-rlang (1.1.5-3) ...
1478s Selecting previously unselected package r-cran-cli.
1478s Preparing to unpack .../154-r-cran-cli_3.6.4-1_amd64.deb ...
1478s Unpacking r-cran-cli (3.6.4-1) ...
1478s Selecting previously unselected package r-cran-glue.
1478s Preparing to unpack .../155-r-cran-glue_1.8.0-1_amd64.deb ...
1478s Unpacking r-cran-glue (1.8.0-1) ...
1478s Selecting previously unselected package r-cran-lifecycle.
1478s Preparing to unpack .../156-r-cran-lifecycle_1.0.5+dfsg-1_all.deb ...
1478s Unpacking r-cran-lifecycle (1.0.5+dfsg-1) ...
1478s Selecting previously unselected package r-cran-vctrs.
1478s Preparing to unpack .../157-r-cran-vctrs_0.6.5-1_amd64.deb ...
1478s Unpacking r-cran-vctrs (0.6.5-1) ...
1478s Selecting previously unselected package r-cran-blob.
1478s Preparing to unpack .../158-r-cran-blob_1.3.0-1_all.deb ...
1478s Unpacking r-cran-blob (1.3.0-1) ...
1478s Selecting previously unselected package r-cran-fastmap.
1478s Preparing to unpack .../159-r-cran-fastmap_1.2.0-1_amd64.deb ...
1478s Unpacking r-cran-fastmap (1.2.0-1) ...
1478s Selecting previously unselected package r-cran-cachem.
1478s Preparing to unpack .../160-r-cran-cachem_1.1.0-1_amd64.deb ...
1478s Unpacking r-cran-cachem (1.1.0-1) ...
1478s Selecting previously unselected package r-cran-memoise.
1478s Preparing to unpack .../161-r-cran-memoise_2.0.1-1build1_all.deb ...
1478s Unpacking r-cran-memoise (2.0.1-1build1) ...
1478s Selecting previously unselected package r-cran-pkgconfig.
1478s Preparing to unpack .../162-r-cran-pkgconfig_2.0.3-2build2_all.deb ...
1478s Unpacking r-cran-pkgconfig (2.0.3-2build2) ...
1478s Selecting previously unselected package r-cran-plogr.
1478s Preparing to unpack .../163-r-cran-plogr_0.2.0-3build2_all.deb ...
1478s Unpacking r-cran-plogr (0.2.0-3build2) ...
1478s Selecting previously unselected package r-cran-cpp11.
1478s Preparing to unpack .../164-r-cran-cpp11_0.5.3-1_all.deb ...
1478s Unpacking r-cran-cpp11 (0.5.3-1) ...
1478s Selecting previously unselected package r-cran-rsqlite.
1478s Preparing to unpack .../165-r-cran-rsqlite_2.3.9-1_amd64.deb ...
1478s Unpacking r-cran-rsqlite (2.3.9-1) ...
1478s Selecting previously unselected package r-cran-curl.
1478s Preparing to unpack .../166-r-cran-curl_7.0.0+dfsg-1_amd64.deb ...
1478s Unpacking r-cran-curl (7.0.0+dfsg-1) ...
1478s Selecting previously unselected package r-cran-jsonlite.
1478s Preparing to unpack .../167-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ...
1478s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ...
1478s Selecting previously unselected package r-cran-mime.
1478s Preparing to unpack .../168-r-cran-mime_0.12-2_amd64.deb ...
1478s Unpacking r-cran-mime (0.12-2) ...
1478s Selecting previously unselected package r-cran-sys.
1478s Preparing to unpack .../169-r-cran-sys_3.4.3-1_amd64.deb ...
1478s Unpacking r-cran-sys (3.4.3-1) ...
1478s Selecting previously unselected package r-cran-askpass.
1478s Preparing to unpack .../170-r-cran-askpass_1.2.1-1_amd64.deb ...
1478s Unpacking r-cran-askpass (1.2.1-1) ...
1478s Selecting previously unselected package r-cran-openssl.
1478s Preparing to unpack .../171-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ...
1478s Unpacking r-cran-openssl (2.3.2+dfsg-1) ...
1478s Selecting previously unselected package r-cran-r6.
1478s Preparing to unpack .../172-r-cran-r6_2.6.1-1_all.deb ...
1478s Unpacking r-cran-r6 (2.6.1-1) ...
1478s Selecting previously unselected package r-cran-httr.
1478s Preparing to unpack .../173-r-cran-httr_1.4.7+dfsg-1_all.deb ...
1478s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
1478s Selecting previously unselected package r-cran-png.
1478s Preparing to unpack .../174-r-cran-png_0.1-8-1build2_amd64.deb ...
1478s Unpacking r-cran-png (0.1-8-1build2) ...
1478s Selecting previously unselected package r-bioc-zlibbioc.
1478s Preparing to unpack .../175-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ...
1478s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ...
1478s Selecting previously unselected package r-bioc-xvector.
1478s Preparing to unpack .../176-r-bioc-xvector_0.46.0-2_amd64.deb ...
1478s Unpacking r-bioc-xvector (0.46.0-2) ...
1478s Selecting previously unselected package r-bioc-ucsc.utils.
1478s Preparing to unpack .../177-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ...
1478s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ...
1478s Selecting previously unselected package r-bioc-genomeinfodbdata.
1478s Preparing to unpack .../178-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ...
1478s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ...
1478s Selecting previously unselected package r-bioc-genomeinfodb.
1478s Preparing to unpack .../179-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ...
1478s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
1478s Selecting previously unselected package r-cran-crayon.
1478s Preparing to unpack .../180-r-cran-crayon_1.5.3-1_all.deb ...
1478s Unpacking r-cran-crayon (1.5.3-1) ...
1478s Selecting previously unselected package r-bioc-biostrings.
1478s Preparing to unpack .../181-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ...
1478s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ...
1478s Selecting previously unselected package r-bioc-keggrest.
1478s Preparing to unpack .../182-r-bioc-keggrest_1.46.0+dfsg-3_all.deb ...
1478s Unpacking r-bioc-keggrest (1.46.0+dfsg-3) ...
1478s Selecting previously unselected package r-bioc-annotationdbi.
1478s Preparing to unpack .../183-r-bioc-annotationdbi_1.68.0-2_all.deb ...
1478s Unpacking r-bioc-annotationdbi (1.68.0-2) ...
1478s Selecting previously unselected package r-cran-xml.
1478s Preparing to unpack .../184-r-cran-xml_3.99-0.20-1_amd64.deb ...
1478s Unpacking r-cran-xml (3.99-0.20-1) ...
1478s Selecting previously unselected package r-cran-xtable.
1479s Preparing to unpack .../185-r-cran-xtable_1%3a1.8-4-2build1_all.deb ...
1479s Unpacking r-cran-xtable (1:1.8-4-2build1) ...
1479s Selecting previously unselected package r-bioc-annotate.
1479s Preparing to unpack .../186-r-bioc-annotate_1.84.0+dfsg-2_all.deb ...
1479s Unpacking r-bioc-annotate (1.84.0+dfsg-2) ...
1479s Selecting previously unselected package r-cran-base64enc.
1479s Preparing to unpack .../187-r-cran-base64enc_0.1-3-3build1_amd64.deb ...
1479s Unpacking r-cran-base64enc (0.1-3-3build1) ...
1479s Selecting previously unselected package r-cran-digest.
1479s Preparing to unpack .../188-r-cran-digest_0.6.39-1_amd64.deb ...
1479s Unpacking r-cran-digest (0.6.39-1) ...
1479s Selecting previously unselected package r-cran-htmltools.
1479s Preparing to unpack .../189-r-cran-htmltools_0.5.8.1-1_amd64.deb ...
1479s Unpacking r-cran-htmltools (0.5.8.1-1) ...
1479s Selecting previously unselected package r-cran-evaluate.
1479s Preparing to unpack .../190-r-cran-evaluate_1.0.5-1_all.deb ...
1479s Unpacking r-cran-evaluate (1.0.5-1) ...
1479s Selecting previously unselected package r-cran-xfun.
1479s Preparing to unpack .../191-r-cran-xfun_0.55+dfsg-1_amd64.deb ...
1479s Unpacking r-cran-xfun (0.55+dfsg-1) ...
1479s Selecting previously unselected package r-cran-highr.
1479s Preparing to unpack .../192-r-cran-highr_0.11+dfsg-1_all.deb ...
1479s Unpacking r-cran-highr (0.11+dfsg-1) ...
1479s Selecting previously unselected package r-cran-yaml.
1479s Preparing to unpack .../193-r-cran-yaml_2.3.10-1_amd64.deb ...
1479s Unpacking r-cran-yaml (2.3.10-1) ...
1479s Selecting previously unselected package libjs-mathjax.
1479s Preparing to unpack .../194-libjs-mathjax_2.7.9+dfsg-1build1_all.deb ...
1479s Unpacking libjs-mathjax (2.7.9+dfsg-1build1) ...
1479s Selecting previously unselected package r-cran-knitr.
1479s Preparing to unpack .../195-r-cran-knitr_1.51+dfsg-1_all.deb ...
1479s Unpacking r-cran-knitr (1.51+dfsg-1) ...
1479s Selecting previously unselected package r-cran-jquerylib.
1479s Preparing to unpack .../196-r-cran-jquerylib_0.1.4+dfsg-5_all.deb ...
1479s Unpacking r-cran-jquerylib (0.1.4+dfsg-5) ...
1479s Selecting previously unselected package r-cran-fs.
1479s Preparing to unpack .../197-r-cran-fs_1.6.5+dfsg-1_amd64.deb ...
1479s Unpacking r-cran-fs (1.6.5+dfsg-1) ...
1479s Selecting previously unselected package r-cran-rappdirs.
1479s Preparing to unpack .../198-r-cran-rappdirs_0.3.3-1build1_amd64.deb ...
1479s Unpacking r-cran-rappdirs (0.3.3-1build1) ...
1479s Selecting previously unselected package r-cran-sass.
1479s Preparing to unpack .../199-r-cran-sass_0.4.9+dfsg-1_amd64.deb ...
1479s Unpacking r-cran-sass (0.4.9+dfsg-1) ...
1479s Selecting previously unselected package r-cran-bslib.
1479s Preparing to unpack .../200-r-cran-bslib_0.9.0+dfsg-3build1_all.deb ...
1479s Unpacking r-cran-bslib (0.9.0+dfsg-3build1) ...
1479s Selecting previously unselected package r-cran-fontawesome.
1479s Preparing to unpack .../201-r-cran-fontawesome_0.5.3-1_all.deb ...
1479s Unpacking r-cran-fontawesome (0.5.3-1) ...
1479s Selecting previously unselected package r-cran-tinytex.
1479s Preparing to unpack .../202-r-cran-tinytex_0.58-1_all.deb ...
1479s Unpacking r-cran-tinytex (0.58-1) ...
1479s Selecting previously unselected package libjs-modernizr.
1479s Preparing to unpack .../203-libjs-modernizr_3.13.0-0.1build1_all.deb ...
1479s Unpacking libjs-modernizr (3.13.0-0.1build1) ...
1479s Selecting previously unselected package r-cran-littler.
1479s Preparing to unpack .../204-r-cran-littler_0.3.22-1_amd64.deb ...
1479s Unpacking r-cran-littler (0.3.22-1) ...
1479s Selecting previously unselected package r-cran-pkgkitten.
1479s Preparing to unpack .../205-r-cran-pkgkitten_0.2.4-1_all.deb ...
1479s Unpacking r-cran-pkgkitten (0.2.4-1) ...
1479s Selecting previously unselected package r-cran-rcpp.
1479s Preparing to unpack .../206-r-cran-rcpp_1.1.0-1_amd64.deb ...
1479s Unpacking r-cran-rcpp (1.1.0-1) ...
1479s Selecting previously unselected package r-cran-later.
1479s Preparing to unpack .../207-r-cran-later_1.4.1+dfsg-1_amd64.deb ...
1479s Unpacking r-cran-later (1.4.1+dfsg-1) ...
1479s Selecting previously unselected package r-cran-magrittr.
1479s Preparing to unpack .../208-r-cran-magrittr_2.0.3-1_amd64.deb ...
1479s Unpacking r-cran-magrittr (2.0.3-1) ...
1479s Selecting previously unselected package r-cran-promises.
1479s Preparing to unpack .../209-r-cran-promises_1.3.2+dfsg-1_amd64.deb ...
1479s Unpacking r-cran-promises (1.3.2+dfsg-1) ...
1479s Selecting previously unselected package r-cran-httpuv.
1479s Preparing to unpack .../210-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ...
1479s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ...
1479s Selecting previously unselected package r-cran-sourcetools.
1479s Preparing to unpack .../211-r-cran-sourcetools_0.1.7-1-1_amd64.deb ...
1479s Unpacking r-cran-sourcetools (0.1.7-1-1) ...
1479s Selecting previously unselected package r-cran-withr.
1479s Preparing to unpack .../212-r-cran-withr_3.0.2+dfsg-1_all.deb ...
1479s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
1479s Selecting previously unselected package r-cran-commonmark.
1479s Preparing to unpack .../213-r-cran-commonmark_1.9.5-1_amd64.deb ...
1479s Unpacking r-cran-commonmark (1.9.5-1) ...
1479s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
1479s Preparing to unpack .../214-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ...
1479s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
1479s Selecting previously unselected package r-cran-shiny.
1479s Preparing to unpack .../215-r-cran-shiny_1.10.0+dfsg-2_all.deb ...
1479s Unpacking r-cran-shiny (1.10.0+dfsg-2) ...
1479s Selecting previously unselected package r-cran-rmarkdown.
1479s Preparing to unpack .../216-r-cran-rmarkdown_2.30+dfsg-1_all.deb ...
1479s Unpacking r-cran-rmarkdown (2.30+dfsg-1) ...
1479s Selecting previously unselected package r-cran-bookdown.
1479s Preparing to unpack .../217-r-cran-bookdown_0.42+dfsg-1_all.deb ...
1479s Unpacking r-cran-bookdown (0.42+dfsg-1) ...
1479s Selecting previously unselected package r-cran-biocmanager.
1479s Preparing to unpack .../218-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ...
1479s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ...
1479s Selecting previously unselected package tex-common.
1479s Preparing to unpack .../219-tex-common_6.20_all.deb ...
1479s Unpacking tex-common (6.20) ...
1479s Selecting previously unselected package t1utils.
1480s Preparing to unpack .../220-t1utils_1.41-4build4_amd64.deb ...
1480s Unpacking t1utils (1.41-4build4) ...
1480s Selecting previously unselected package texlive-binaries.
1480s Preparing to unpack .../221-texlive-binaries_2025.20250727.75242+ds-5build1_amd64.deb ...
1480s Unpacking texlive-binaries (2025.20250727.75242+ds-5build1) ...
1480s Selecting previously unselected package texlive-base.
1480s Preparing to unpack .../222-texlive-base_2025.20260124-1_all.deb ...
1480s Unpacking texlive-base (2025.20260124-1) ...
1480s Selecting previously unselected package texlive-latex-base.
1480s Preparing to unpack .../223-texlive-latex-base_2025.20260124-1_all.deb ...
1480s Unpacking texlive-latex-base (2025.20260124-1) ...
1480s Selecting previously unselected package texlive-bibtex-extra.
1480s Preparing to unpack .../224-texlive-bibtex-extra_2025.20260124-1_all.deb ...
1480s Unpacking texlive-bibtex-extra (2025.20260124-1) ...
1482s Selecting previously unselected package r-bioc-biocversion.
1482s Preparing to unpack .../225-r-bioc-biocversion_3.20.0-2_all.deb ...
1482s Unpacking r-bioc-biocversion (3.20.0-2) ...
1482s Selecting previously unselected package r-bioc-biocstyle.
1482s Preparing to unpack .../226-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ...
1482s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ...
1482s Selecting previously unselected package r-cran-lattice.
1482s Preparing to unpack .../227-r-cran-lattice_0.22-9-1_amd64.deb ...
1482s Unpacking r-cran-lattice (0.22-9-1) ...
1482s Selecting previously unselected package r-cran-rcolorbrewer.
1482s Preparing to unpack .../228-r-cran-rcolorbrewer_1.1-3-1build2_all.deb ...
1482s Unpacking r-cran-rcolorbrewer (1.1-3-1build2) ...
1482s Selecting previously unselected package r-bioc-geneplotter.
1482s Preparing to unpack .../229-r-bioc-geneplotter_1.84.0+dfsg-2_all.deb ...
1482s Unpacking r-bioc-geneplotter (1.84.0+dfsg-2) ...
1482s Setting up libjs-json (0~20221030+~1.0.8-1build1) ...
1482s Setting up javascript-common (12+nmu1build1) ...
1482s Setting up libgraphite2-3:amd64 (1.3.14-11ubuntu1) ...
1482s Setting up libpixman-1-0:amd64 (0.46.4-1) ...
1482s Setting up libsharpyuv0:amd64 (1.5.0-0.1build1) ...
1482s Setting up fonts-mathjax (2.7.9+dfsg-1build1) ...
1482s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu2) ...
1482s Setting up libzstd-dev:amd64 (1.5.7+dfsg-3) ...
1482s Setting up libxpm4:amd64 (1:3.5.17-1build3) ...
1482s Setting up libjs-mathjax (2.7.9+dfsg-1build1) ...
1482s Setting up libxi6:amd64 (2:1.8.2-2) ...
1482s Setting up libxrender1:amd64 (1:0.9.12-1) ...
1482s Setting up libdatrie1:amd64 (0.2.14-1) ...
1482s Setting up libjs-popper.js (1.16.1+ds-6build1) ...
1482s Setting up libxcb-render0:amd64 (1.17.0-2ubuntu1) ...
1482s Setting up libjs-sifter.js (0.6.0+dfsg-3) ...
1482s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-6) ...
1482s Setting up libjs-lunr (2.3.9~dfsg-2) ...
1482s Setting up unzip (6.0-29ubuntu1) ...
1482s Setting up liblatex-tounicode-perl (1.93-1) ...
1482s Setting up x11-common (1:7.7+24ubuntu1) ...
1482s Setting up node-html5shiv (3.7.3+dfsg-5) ...
1482s Setting up libdeflate0:amd64 (1.23-2build1) ...
1482s Setting up linux-libc-dev:amd64 (6.19.0-3.3) ...
1482s Setting up libjs-microplugin.js (0.0.3+dfsg-2) ...
1482s Setting up libxcb-shm0:amd64 (1.17.0-2ubuntu1) ...
1482s Setting up libgomp1:amd64 (15.2.0-12ubuntu1) ...
1482s Setting up libjs-modernizr (3.13.0-0.1build1) ...
1482s Setting up libjbig0:amd64 (2.1-6.1ubuntu3) ...
1482s Setting up libpcre2-16-0:amd64 (10.46-1) ...
1482s Setting up libjs-es5-shim (4.6.7-2) ...
1482s Setting up tex-common (6.20) ...
1482s update-language: texlive-base not installed and configured, doing nothing!
1482s Setting up libio-string-perl (1.08-4) ...
1482s Setting up zip (3.0-15ubuntu3) ...
1482s Setting up libpcre2-32-0:amd64 (10.46-1) ...
1482s Setting up libblas3:amd64 (3.12.1-7ubuntu1) ...
1482s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
1482s Setting up libtirpc-dev:amd64 (1.3.6+ds-1) ...
1482s Setting up libpkgconf3:amd64 (1.8.1-4build1) ...
1482s Setting up rpcsvc-proto (1.4.3-1build1) ...
1482s Setting up libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.2) ...
1482s Setting up libteckit0:amd64 (2.5.13+ds-1) ...
1482s Setting up t1utils (1.41-4build4) ...
1482s Setting up libquadmath0:amd64 (15.2.0-12ubuntu1) ...
1482s Setting up libtexlua53-5:amd64 (2025.20250727.75242+ds-5build1) ...
1482s Setting up libjs-d3 (3.5.17-4build1) ...
1482s Setting up fonts-dejavu-mono (2.37-8build1) ...
1482s Setting up libmpc3:amd64 (1.3.1-2) ...
1482s Setting up libtcl8.6:amd64 (8.6.17+dfsg-1build1) ...
1482s Setting up libmpfi0:amd64 (1.5.4+ds-4build1) ...
1482s Setting up icu-devtools (78.2-1ubuntu1) ...
1482s Setting up fonts-dejavu-core (2.37-8build1) ...
1482s Setting up pkgconf-bin (1.8.1-4build1) ...
1482s Setting up libjpeg-turbo8:amd64 (2.1.5-4ubuntu3) ...
1482s Setting up libkpathsea6:amd64 (2025.20250727.75242+ds-5build1) ...
1482s Setting up libgfortran5:amd64 (15.2.0-12ubuntu1) ...
1482s Setting up libwebp7:amd64 (1.5.0-0.1build1) ...
1482s Setting up liblzma-dev:amd64 (5.8.2-2) ...
1482s Setting up libubsan1:amd64 (15.2.0-12ubuntu1) ...
1482s Setting up libpcre2-posix3:amd64 (10.46-1) ...
1482s Setting up libjs-highlight.js (10.7.3+dfsg-2) ...
1482s Setting up libhwasan0:amd64 (15.2.0-12ubuntu1) ...
1482s Setting up libcrypt-dev:amd64 (1:4.5.1-1) ...
1482s Setting up libasan8:amd64 (15.2.0-12ubuntu1) ...
1482s Setting up fonts-lmodern (2.005-1build1) ...
1482s Setting up liblua5.4-0:amd64 (5.4.8-1) ...
1482s Setting up libharfbuzz0b:amd64 (12.3.2-1) ...
1482s Setting up libthai-data (0.1.30-1) ...
1482s Setting up node-bootstrap-sass (3.4.3-2) ...
1482s Setting up libjs-prettify (2015.12.04+dfsg-3) ...
1482s Setting up libxss1:amd64 (1:1.2.3-1build4) ...
1482s Setting up libjs-bootstrap4 (4.6.2+dfsg-1) ...
1482s Setting up libpaper2:amd64 (2.2.5-0.3build1) ...
1482s Setting up pandoc-data (3.1.11.1-3build1) ...
1482s Setting up libtsan2:amd64 (15.2.0-12ubuntu1) ...
1482s Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ...
1482s Setting up libisl23:amd64 (0.27-1build1) ...
1482s Setting up libc-dev-bin (2.42-2ubuntu4) ...
1482s Setting up libdeflate-dev:amd64 (1.23-2build1) ...
1482s Setting up node-normalize.css (8.0.1-5.1) ...
1482s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ...
1482s Setting up xdg-utils (1.2.1-2ubuntu2) ...
1482s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
1482s Setting up libcc1-0:amd64 (15.2.0-12ubuntu1) ...
1482s Setting up liblsan0:amd64 (15.2.0-12ubuntu1) ...
1482s Setting up libblas-dev:amd64 (3.12.1-7ubuntu1) ...
1482s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
1482s Setting up dctrl-tools (2.24-3build4) ...
1482s Setting up libjs-bootstrap (3.4.1+dfsg-6) ...
1482s Setting up libitm1:amd64 (15.2.0-12ubuntu1) ...
1482s Setting up libsynctex2:amd64 (2025.20250727.75242+ds-5build1) ...
1482s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ...
1482s Setting up libpotrace0:amd64 (1.16-2build2) ...
1482s Setting up libjpeg8:amd64 (8c-2ubuntu11) ...
1482s Setting up libice6:amd64 (2:1.1.1-1build1) ...
1482s Setting up liblapack3:amd64 (3.12.1-7ubuntu1) ...
1482s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
1482s Setting up libgcc-15-dev:amd64 (15.2.0-12ubuntu1) ...
1482s Setting up fontconfig-config (2.17.1-3ubuntu1) ...
1482s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
1482s Setting up libpaper-utils (2.2.5-0.3build1) ...
1482s Setting up cpp-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
1482s Setting up libbibtex-parser-perl (1.93+dfsg-1) ...
1482s Setting up libgfortran-15-dev:amd64 (15.2.0-12ubuntu1) ...
1482s Setting up libjs-jquery-datatables (1.11.5+dfsg-2build1) ...
1482s Setting up pkgconf:amd64 (1.8.1-4build1) ...
1482s Setting up gcc-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
1482s Setting up libthai0:amd64 (0.1.30-1) ...
1482s Setting up libjs-jquery-ui (1.13.2+dfsg-1build1) ...
1482s Setting up libptexenc1:amd64 (2025.20250727.75242+ds-5build1) ...
1482s Setting up pandoc (3.1.11.1+ds-4) ...
1482s Setting up liblapack-dev:amd64 (3.12.1-7ubuntu1) ...
1482s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
1482s Setting up cpp-15 (15.2.0-12ubuntu1) ...
1482s Setting up libtiff6:amd64 (4.7.0-3ubuntu3) ...
1482s Setting up libc6-dev:amd64 (2.42-2ubuntu4) ...
1482s Setting up libfontconfig1:amd64 (2.17.1-3ubuntu1) ...
1482s Setting up libsm6:amd64 (2:1.2.6-1build1) ...
1482s Setting up libicu-dev:amd64 (78.2-1ubuntu1) ...
1482s Setting up libbz2-dev:amd64 (1.0.8-6build2) ...
1482s Setting up cpp-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
1482s Setting up gfortran-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
1482s Setting up fontconfig (2.17.1-3ubuntu1) ...
1484s Regenerating fonts cache... done.
1484s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-4ubuntu3) ...
1484s Setting up libxft2:amd64 (2.3.6-1build2) ...
1484s Setting up libncurses-dev:amd64 (6.6+20251231-1) ...
1484s Setting up libpcre2-dev:amd64 (10.46-1) ...
1484s Setting up gcc-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
1484s Setting up libtk8.6:amd64 (8.6.17-1) ...
1484s Setting up libpango-1.0-0:amd64 (1.57.0-1) ...
1484s Setting up libreadline-dev:amd64 (8.3-3) ...
1484s Setting up gfortran-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
1484s Setting up libcairo2:amd64 (1.18.4-3) ...
1484s Setting up gcc-15 (15.2.0-12ubuntu1) ...
1484s Setting up libstdc++-15-dev:amd64 (15.2.0-12ubuntu1) ...
1484s Setting up libxt6t64:amd64 (1:1.2.1-1.3) ...
1484s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu2) ...
1484s Setting up cpp (4:15.2.0-4ubuntu1) ...
1484s Setting up libpangoft2-1.0-0:amd64 (1.57.0-1) ...
1484s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ...
1484s Setting up gfortran-15 (15.2.0-12ubuntu1) ...
1484s Setting up libpangocairo-1.0-0:amd64 (1.57.0-1) ...
1484s Setting up g++-15-x86-64-linux-gnu (15.2.0-12ubuntu1) ...
1484s Setting up libxmu6:amd64 (2:1.1.3-4) ...
1484s Setting up libpng-dev:amd64 (1.6.54-1) ...
1484s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ...
1484s Setting up libxaw7:amd64 (2:1.0.16-1build1) ...
1484s Setting up gcc (4:15.2.0-4ubuntu1) ...
1484s Setting up r-base-core (4.5.2-1ubuntu2) ...
1484s Creating config file /etc/R/Renviron with new version
1484s Setting up r-cran-crayon (1.5.3-1) ...
1484s Setting up r-cran-sourcetools (0.1.7-1-1) ...
1484s Setting up r-cran-lattice (0.22-9-1) ...
1484s Setting up r-cran-xml (3.99-0.20-1) ...
1484s Setting up texlive-binaries (2025.20250727.75242+ds-5build1) ...
1484s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
1484s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
1484s Setting up g++-x86-64-linux-gnu (4:15.2.0-4ubuntu1) ...
1484s Setting up r-cran-commonmark (1.9.5-1) ...
1484s Setting up r-cran-r6 (2.6.1-1) ...
1484s Setting up r-cran-pkgkitten (0.2.4-1) ...
1484s Setting up texlive-base (2025.20260124-1) ...
1485s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
1485s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
1485s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
1485s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
1485s Setting up g++-15 (15.2.0-12ubuntu1) ...
1485s Setting up r-cran-magrittr (2.0.3-1) ...
1485s Setting up r-cran-rappdirs (0.3.3-1build1) ...
1485s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ...
1485s Setting up r-cran-littler (0.3.22-1) ...
1485s Setting up r-cran-fs (1.6.5+dfsg-1) ...
1485s Setting up r-cran-rcpp (1.1.0-1) ...
1485s Setting up r-cran-curl (7.0.0+dfsg-1) ...
1485s Setting up r-bioc-biocgenerics (0.52.0-2) ...
1485s Setting up r-cran-rlang (1.1.5-3) ...
1485s Setting up r-cran-xfun (0.55+dfsg-1) ...
1485s Setting up r-cran-sys (3.4.3-1) ...
1485s Setting up r-cran-plogr (0.2.0-3build2) ...
1485s Setting up r-cran-withr (3.0.2+dfsg-1) ...
1485s Setting up r-cran-mime (0.12-2) ...
1485s Setting up r-cran-base64enc (0.1-3-3build1) ...
1485s Setting up r-cran-digest (0.6.39-1) ...
1485s Setting up r-cran-yaml (2.3.10-1) ...
1485s Setting up r-cran-evaluate (1.0.5-1) ...
1485s Setting up r-cran-dbi (1.2.3-1build1) ...
1485s Setting up r-cran-highr (0.11+dfsg-1) ...
1485s Setting up r-cran-glue (1.8.0-1) ...
1485s Setting up r-cran-bit (4.6.0+dfsg-1) ...
1485s Setting up r-cran-xtable (1:1.8-4-2build1) ...
1485s Setting up r-cran-cli (3.6.4-1) ...
1485s Setting up gfortran (4:15.2.0-4ubuntu1) ...
1485s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
1485s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
1485s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
1485s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
1485s Setting up r-cran-lifecycle (1.0.5+dfsg-1) ...
1485s Setting up r-bioc-biocversion (3.20.0-2) ...
1485s Setting up r-cran-bit64 (4.6.0-1-4) ...
1485s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ...
1485s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ...
1485s Setting up r-cran-askpass (1.2.1-1) ...
1485s Setting up r-cran-fastmap (1.2.0-1) ...
1485s Setting up r-cran-png (0.1-8-1build2) ...
1485s Setting up r-bioc-biobase (2.66.0-2) ...
1485s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
1485s Setting up r-cran-pkgconfig (2.0.3-2build2) ...
1485s Setting up texlive-latex-base (2025.20260124-1) ...
1485s Setting up r-cran-cpp11 (0.5.3-1) ...
1485s Setting up r-cran-rcolorbrewer (1.1-3-1build2) ...
1485s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ...
1485s Setting up r-cran-later (1.4.1+dfsg-1) ...
1485s Setting up r-cran-htmltools (0.5.8.1-1) ...
1485s Setting up r-cran-tinytex (0.58-1) ...
1485s Setting up r-cran-knitr (1.51+dfsg-1) ...
1485s Setting up g++ (4:15.2.0-4ubuntu1) ...
1485s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
1485s Setting up r-cran-cachem (1.1.0-1) ...
1485s Setting up r-cran-sass (0.4.9+dfsg-1) ...
1485s Setting up build-essential (12.12ubuntu2) ...
1485s Setting up r-bioc-iranges (2.40.1-3) ...
1485s Setting up r-cran-vctrs (0.6.5-1) ...
1485s Setting up r-cran-openssl (2.3.2+dfsg-1) ...
1485s Setting up r-base-dev (4.5.2-1ubuntu2) ...
1485s Setting up r-cran-fontawesome (0.5.3-1) ...
1485s Setting up r-cran-jquerylib (0.1.4+dfsg-5) ...
1485s Setting up texlive-bibtex-extra (2025.20260124-1) ...
1486s Setting up r-cran-httr (1.4.7+dfsg-1) ...
1486s Setting up r-cran-memoise (2.0.1-1build1) ...
1486s Setting up r-cran-promises (1.3.2+dfsg-1) ...
1486s Setting up r-cran-blob (1.3.0-1) ...
1486s Setting up pkg-r-autopkgtest (20250812) ...
1486s Setting up r-bioc-xvector (0.46.0-2) ...
1486s Setting up r-cran-rsqlite (2.3.9-1) ...
1486s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ...
1486s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
1486s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
1486s Setting up r-cran-bslib (0.9.0+dfsg-3build1) ...
1486s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ...
1486s Setting up r-cran-shiny (1.10.0+dfsg-2) ...
1486s Setting up r-cran-rmarkdown (2.30+dfsg-1) ...
1486s Setting up r-cran-bookdown (0.42+dfsg-1) ...
1486s Setting up r-bioc-keggrest (1.46.0+dfsg-3) ...
1486s Setting up r-bioc-annotationdbi (1.68.0-2) ...
1486s Setting up r-bioc-annotate (1.84.0+dfsg-2) ...
1486s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ...
1486s Setting up r-bioc-geneplotter (1.84.0+dfsg-2) ...
1486s Processing triggers for man-db (2.13.1-1build1) ...
1487s Processing triggers for install-info (7.2-5) ...
1487s Processing triggers for libc-bin (2.42-2ubuntu4) ...
1487s Processing triggers for tex-common (6.20) ...
1487s Running updmap-sys. This may take some time... done.
1487s Running mktexlsr /var/lib/texmf ... done.
1487s Building format(s) --all.
1501s 	This may take some time... done.
1502s autopkgtest [23:48:28]: test environment configured for cross building
1502s autopkgtest [23:48:28]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
1502s autopkgtest [23:48:28]: test pkg-r-autopkgtest: [-----------------------
1502s Test: Try to load the R library geneplotter
1503s 
1503s R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
1503s Copyright (C) 2025 The R Foundation for Statistical Computing
1503s Platform: x86_64-pc-linux-gnu
1503s 
1503s R is free software and comes with ABSOLUTELY NO WARRANTY.
1503s You are welcome to redistribute it under certain conditions.
1503s Type 'license()' or 'licence()' for distribution details.
1503s 
1503s R is a collaborative project with many contributors.
1503s Type 'contributors()' for more information and
1503s 'citation()' on how to cite R or R packages in publications.
1503s 
1503s Type 'demo()' for some demos, 'help()' for on-line help, or
1503s 'help.start()' for an HTML browser interface to help.
1503s Type 'q()' to quit R.
1503s 
1503s > library('geneplotter')
1503s Loading required package: Biobase
1503s Loading required package: BiocGenerics
1503s 
1503s Attaching package: ‘BiocGenerics’
1503s 
1503s The following objects are masked from ‘package:stats’:
1503s 
1503s     IQR, mad, sd, var, xtabs
1503s 
1503s The following objects are masked from ‘package:base’:
1503s 
1503s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
1503s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
1503s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
1503s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
1503s     Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff,
1503s     table, tapply, union, unique, unsplit, which.max, which.min
1503s 
1503s Welcome to Bioconductor
1503s 
1503s     Vignettes contain introductory material; view with
1503s     'browseVignettes()'. To cite Bioconductor, see
1503s     'citation("Biobase")', and for packages 'citation("pkgname")'.
1503s 
1503s Loading required package: lattice
1503s Loading required package: annotate
1503s Loading required package: AnnotationDbi
1503s Loading required package: stats4
1503s Loading required package: IRanges
1503s Loading required package: S4Vectors
1503s 
1503s Attaching package: ‘S4Vectors’
1503s 
1503s The following object is masked from ‘package:utils’:
1503s 
1503s     findMatches
1503s 
1503s The following objects are masked from ‘package:base’:
1503s 
1503s     expand.grid, I, unname
1503s 
1505s Loading required package: XML
1505s > 
1505s find: ‘tests’: No such file or directory
1505s autopkgtest [23:48:31]: test pkg-r-autopkgtest: -----------------------]
1505s autopkgtest [23:48:31]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
1505s pkg-r-autopkgtest    PASS
1506s autopkgtest [23:48:32]: @@@@@@@@@@@@@@@@@@@@ summary
1506s pkg-r-autopkgtest    PASS