0s autopkgtest [10:35:39]: starting date and time: 2026-01-23 10:35:39+0000 0s autopkgtest [10:35:39]: git checkout: 4b346b80 nova: make wait_reboot return success even when a no-op 0s autopkgtest [10:35:39]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.2d6wf6kd/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade python-ase --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.14.2-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-12.secgroup --name adt-resolute-i386-python-ase-20260123-103539-juju-7f2275-prod-proposed-migration-environment-15-73af318c-5b94-4234-a078-e5cce8b28402 --image adt/ubuntu-resolute-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 4s Creating nova instance adt-resolute-i386-python-ase-20260123-103539-juju-7f2275-prod-proposed-migration-environment-15-73af318c-5b94-4234-a078-e5cce8b28402 from image adt/ubuntu-resolute-amd64-server-20260123.img (UUID 789dbc23-4f1b-4e7c-bcab-98e6eebf04f2)... 98s autopkgtest [10:37:17]: testbed dpkg architecture: amd64 98s autopkgtest [10:37:17]: testbed apt version: 3.1.13 98s autopkgtest [10:37:17]: @@@@@@@@@@@@@@@@@@@@ test bed setup 99s autopkgtest [10:37:18]: testbed release detected to be: None 99s autopkgtest [10:37:18]: updating testbed package index (apt update) 99s Get:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease [124 kB] 99s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 99s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 99s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 99s Get:5 http://ftpmaster.internal/ubuntu resolute-proposed/restricted Sources [2820 B] 99s Get:6 http://ftpmaster.internal/ubuntu resolute-proposed/universe Sources [1059 kB] 100s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse Sources [23.6 kB] 100s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main Sources [95.6 kB] 100s Get:9 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 Packages [125 kB] 100s Get:10 http://ftpmaster.internal/ubuntu resolute-proposed/main i386 Packages [104 kB] 100s Get:11 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 c-n-f Metadata [3384 B] 100s Get:12 http://ftpmaster.internal/ubuntu resolute-proposed/restricted i386 Packages [3696 B] 100s Get:13 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 Packages [12.3 kB] 100s Get:14 http://ftpmaster.internal/ubuntu resolute-proposed/restricted amd64 c-n-f Metadata [336 B] 100s Get:15 http://ftpmaster.internal/ubuntu resolute-proposed/universe i386 Packages [409 kB] 100s Get:16 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 Packages [943 kB] 100s Get:17 http://ftpmaster.internal/ubuntu resolute-proposed/universe amd64 c-n-f Metadata [22.3 kB] 100s Get:18 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 Packages [11.6 kB] 100s Get:19 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse i386 Packages [4704 B] 100s Get:20 http://ftpmaster.internal/ubuntu resolute-proposed/multiverse amd64 c-n-f Metadata [564 B] 101s Fetched 2946 kB in 1s (3263 kB/s) 101s Reading package lists... 102s Hit:1 http://ftpmaster.internal/ubuntu resolute-proposed InRelease 102s Hit:2 http://ftpmaster.internal/ubuntu resolute InRelease 102s Hit:3 http://ftpmaster.internal/ubuntu resolute-updates InRelease 102s Hit:4 http://ftpmaster.internal/ubuntu resolute-security InRelease 102s Reading package lists... 102s Reading package lists... 102s Building dependency tree... 102s Reading state information... 103s Calculating upgrade... 103s The following packages were automatically installed and are no longer required: 103s python3.13 python3.13-minimal 103s Use 'sudo apt autoremove' to remove them. 103s The following NEW packages will be installed: 103s libpython3.14-minimal libpython3.14-stdlib python3.14 python3.14-minimal 103s The following packages will be upgraded: 103s libpython3-stdlib python3 python3-gdbm python3-minimal 103s 4 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 103s Need to get 6769 kB of archives. 103s After this operation, 24.5 MB of additional disk space will be used. 103s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-minimal amd64 3.14.2-1 [920 kB] 103s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-minimal amd64 3.14.2-1 [2563 kB] 103s Get:3 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-minimal amd64 3.14.2-1 [28.2 kB] 103s Get:4 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3 amd64 3.14.2-1 [22.9 kB] 103s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 libpython3.14-stdlib amd64 3.14.2-1 [2398 kB] 103s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14 amd64 3.14.2-1 [816 kB] 103s Get:7 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 libpython3-stdlib amd64 3.14.2-1 [10.9 kB] 103s Get:8 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-gdbm amd64 3.14.2-1 [11.1 kB] 103s dpkg-preconfigure: unable to re-open stdin: No such file or directory 103s Fetched 6769 kB in 0s (23.4 MB/s) 103s Selecting previously unselected package libpython3.14-minimal:amd64. 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124176 files and directories currently installed.) 103s Preparing to unpack .../libpython3.14-minimal_3.14.2-1_amd64.deb ... 103s Unpacking libpython3.14-minimal:amd64 (3.14.2-1) ... 103s Selecting previously unselected package python3.14-minimal. 103s Preparing to unpack .../python3.14-minimal_3.14.2-1_amd64.deb ... 103s Unpacking python3.14-minimal (3.14.2-1) ... 103s Setting up libpython3.14-minimal:amd64 (3.14.2-1) ... 103s Setting up python3.14-minimal (3.14.2-1) ... 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124518 files and directories currently installed.) 104s Preparing to unpack .../python3-minimal_3.14.2-1_amd64.deb ... 104s Unpacking python3-minimal (3.14.2-1) over (3.13.9-3) ... 104s Setting up python3-minimal (3.14.2-1) ... 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124518 files and directories currently installed.) 104s Preparing to unpack .../python3_3.14.2-1_amd64.deb ... 104s running python pre-rtupdate hooks for python3.14... 104s Unpacking python3 (3.14.2-1) over (3.13.9-3) ... 104s Selecting previously unselected package libpython3.14-stdlib:amd64. 104s Preparing to unpack .../libpython3.14-stdlib_3.14.2-1_amd64.deb ... 104s Unpacking libpython3.14-stdlib:amd64 (3.14.2-1) ... 104s Selecting previously unselected package python3.14. 104s Preparing to unpack .../python3.14_3.14.2-1_amd64.deb ... 104s Unpacking python3.14 (3.14.2-1) ... 104s Preparing to unpack .../libpython3-stdlib_3.14.2-1_amd64.deb ... 104s Unpacking libpython3-stdlib:amd64 (3.14.2-1) over (3.13.9-3) ... 105s Preparing to unpack .../python3-gdbm_3.14.2-1_amd64.deb ... 105s Unpacking python3-gdbm (3.14.2-1) over (3.13.9-3) ... 105s Setting up libpython3.14-stdlib:amd64 (3.14.2-1) ... 105s Setting up python3.14 (3.14.2-1) ... 105s Setting up libpython3-stdlib:amd64 (3.14.2-1) ... 105s Setting up python3-gdbm (3.14.2-1) ... 105s Setting up python3 (3.14.2-1) ... 105s running python rtupdate hooks for python3.14... 105s running python post-rtupdate hooks for python3.14... 105s Processing triggers for man-db (2.13.1-1) ... 106s Processing triggers for systemd (259-1ubuntu2) ... 106s autopkgtest [10:37:25]: upgrading testbed (apt dist-upgrade and autopurge) 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 106s Calculating upgrade... 106s The following packages were automatically installed and are no longer required: 106s python3.13 python3.13-minimal 106s Use 'sudo apt autoremove' to remove them. 106s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 107s Solving dependencies... 107s The following packages will be REMOVED: 107s python3.13* python3.13-minimal* 107s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 107s After this operation, 7860 kB disk space will be freed. 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124948 files and directories currently installed.) 107s Removing python3.13 (3.13.11-1) ... 107s Removing python3.13-minimal (3.13.11-1) ... 107s Processing triggers for man-db (2.13.1-1) ... 108s Processing triggers for systemd (259-1ubuntu2) ... 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124921 files and directories currently installed.) 108s Purging configuration files for python3.13-minimal (3.13.11-1) ... 110s autopkgtest [10:37:29]: testbed running kernel: Linux 6.18.0-9-generic #9-Ubuntu SMP PREEMPT_DYNAMIC Mon Jan 12 16:49:02 UTC 2026 110s autopkgtest [10:37:29]: @@@@@@@@@@@@@@@@@@@@ apt-source python-ase 112s Get:1 http://ftpmaster.internal/ubuntu resolute/universe python-ase 3.26.0-2ubuntu1 (dsc) [2745 B] 112s Get:2 http://ftpmaster.internal/ubuntu resolute/universe python-ase 3.26.0-2ubuntu1 (tar) [2632 kB] 112s Get:3 http://ftpmaster.internal/ubuntu resolute/universe python-ase 3.26.0-2ubuntu1 (diff) [10.3 kB] 112s gpgv: Signature made Wed Nov 12 18:16:14 2025 UTC 112s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 112s gpgv: Can't check signature: No public key 112s dpkg-source: warning: cannot verify inline signature for ./python-ase_3.26.0-2ubuntu1.dsc: no acceptable signature found 112s autopkgtest [10:37:31]: testing package python-ase version 3.26.0-2ubuntu1 112s autopkgtest [10:37:31]: build not needed 115s autopkgtest [10:37:34]: test command1: preparing testbed 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s Solving dependencies... 115s The following NEW packages will be installed: 115s ase fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 115s fonts-lyx libaec0 libblas3 libdeflate0 libfontconfig1 libgfortran5 libgomp1 115s libgraphite2-3 libharfbuzz0b libhdf5-310 libhdf5-hl-310 libimagequant0 115s libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap5 libjs-jquery 115s libjs-jquery-ui liblapack3 liblcms2-2 liblerc4 libnetcdf22 libopenjp2-7 115s libqhull-r8.0 libraqm0 libsharpyuv0 libsymspg2 libsz2 libtcl8.6 libtiff6 115s libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 115s libxss1 libzopfli1 node-popper2 python-matplotlib-data python3-all 115s python3-ase python3-brotli python3-cftime python3-contourpy python3-cycler 115s python3-decorator python3-fonttools python3-iniconfig python3-kiwisolver 115s python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-netcdf4 115s python3-numpy python3-numpy-dev python3-pil python3-pil.imagetk 115s python3-pluggy python3-pycodcif python3-pytest python3-pytest-mock 115s python3-scipy python3-spglib python3-sympy python3-tk python3-ufolib2 115s python3-zopfli python3.13 python3.13-minimal python3.13-tk python3.14-tk 115s unicode-data x11-common 116s 0 upgraded, 81 newly installed, 0 to remove and 0 not upgraded. 116s Need to get 88.2 MB of archives. 116s After this operation, 393 MB of additional disk space will be used. 116s Get:1 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-minimal amd64 3.13.11-1 [2408 kB] 116s Get:2 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy-dev amd64 1:2.3.5+ds-3 [147 kB] 116s Get:3 http://ftpmaster.internal/ubuntu resolute/main amd64 libblas3 amd64 3.12.1-7ubuntu1 [260 kB] 116s Get:4 http://ftpmaster.internal/ubuntu resolute/main amd64 libgfortran5 amd64 15.2.0-11ubuntu1 [939 kB] 116s Get:5 http://ftpmaster.internal/ubuntu resolute/main amd64 liblapack3 amd64 3.12.1-7ubuntu1 [2739 kB] 116s Get:6 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-numpy amd64 1:2.3.5+ds-3 [8129 kB] 116s Get:7 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13 amd64 3.13.11-1 [758 kB] 116s Get:8 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1build1 [531 kB] 116s Get:9 http://ftpmaster.internal/ubuntu resolute/universe amd64 node-popper2 all 2.11.2-9 [106 kB] 116s Get:10 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-bootstrap5 all 5.3.8+dfsg-2 [480 kB] 116s Get:11 http://ftpmaster.internal/ubuntu resolute/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1build1 [321 kB] 116s Get:12 http://ftpmaster.internal/ubuntu resolute/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1build1 [251 kB] 116s Get:13 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-decorator all 5.2.1-2 [28.1 kB] 116s Get:14 http://ftpmaster.internal/ubuntu resolute/universe amd64 libqhull-r8.0 amd64 2020.2-8 [197 kB] 116s Get:15 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-scipy amd64 1.16.3-3 [18.8 MB] 116s Get:16 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsymspg2 amd64 2.6.0-3build1 [209 kB] 117s Get:17 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-spglib amd64 2.6.0-3build1 [32.6 kB] 117s Get:18 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-mono all 2.37-8build1 [502 kB] 117s Get:19 http://ftpmaster.internal/ubuntu resolute/main amd64 fonts-dejavu-core all 2.37-8build1 [834 kB] 117s Get:20 http://ftpmaster.internal/ubuntu resolute/universe amd64 fonts-lyx all 2.5.0~RC2-3 [171 kB] 117s Get:21 http://ftpmaster.internal/ubuntu resolute/universe amd64 python-matplotlib-data all 3.10.7+dfsg1-1 [2930 kB] 117s Get:22 http://ftpmaster.internal/ubuntu resolute/main amd64 libgomp1 amd64 15.2.0-11ubuntu1 [151 kB] 117s Get:23 http://ftpmaster.internal/ubuntu resolute/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 117s Get:24 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg-turbo8 amd64 2.1.5-4ubuntu2 [152 kB] 117s Get:25 http://ftpmaster.internal/ubuntu resolute/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 117s Get:26 http://ftpmaster.internal/ubuntu resolute/main amd64 liblcms2-2 amd64 2.17-1 [170 kB] 117s Get:27 http://ftpmaster.internal/ubuntu resolute/main amd64 libopenjp2-7 amd64 2.5.4-1 [188 kB] 117s Get:28 http://ftpmaster.internal/ubuntu resolute/main amd64 libgraphite2-3 amd64 1.3.14-11ubuntu1 [73.7 kB] 117s Get:29 http://ftpmaster.internal/ubuntu resolute/main amd64 libharfbuzz0b amd64 12.3.0-4 [529 kB] 117s Get:30 http://ftpmaster.internal/ubuntu resolute/main amd64 libraqm0 amd64 0.10.3-1 [15.4 kB] 117s Get:31 http://ftpmaster.internal/ubuntu resolute/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 117s Get:32 http://ftpmaster.internal/ubuntu resolute/main amd64 libjbig0 amd64 2.1-6.1ubuntu3 [30.0 kB] 117s Get:33 http://ftpmaster.internal/ubuntu resolute/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu2 [207 kB] 117s Get:34 http://ftpmaster.internal/ubuntu resolute/main amd64 libsharpyuv0 amd64 1.5.0-0.1build1 [17.6 kB] 117s Get:35 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebp7 amd64 1.5.0-0.1build1 [264 kB] 117s Get:36 http://ftpmaster.internal/ubuntu resolute/main amd64 libtiff6 amd64 4.7.0-3ubuntu3 [209 kB] 117s Get:37 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpdemux2 amd64 1.5.0-0.1build1 [12.8 kB] 117s Get:38 http://ftpmaster.internal/ubuntu resolute/main amd64 libwebpmux3 amd64 1.5.0-0.1build1 [26.4 kB] 117s Get:39 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-pil amd64 12.0.0-1ubuntu1 [494 kB] 117s Get:40 http://ftpmaster.internal/ubuntu resolute/main amd64 libtcl8.6 amd64 8.6.17+dfsg-1 [1036 kB] 117s Get:41 http://ftpmaster.internal/ubuntu resolute/main amd64 fontconfig-config amd64 2.15.0-2.4ubuntu1 [38.1 kB] 117s Get:42 http://ftpmaster.internal/ubuntu resolute/main amd64 libfontconfig1 amd64 2.15.0-2.4ubuntu1 [143 kB] 117s Get:43 http://ftpmaster.internal/ubuntu resolute/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 117s Get:44 http://ftpmaster.internal/ubuntu resolute/main amd64 libxft2 amd64 2.3.6-1build2 [45.1 kB] 117s Get:45 http://ftpmaster.internal/ubuntu resolute/main amd64 x11-common all 1:7.7+24ubuntu1 [22.4 kB] 117s Get:46 http://ftpmaster.internal/ubuntu resolute/main amd64 libxss1 amd64 1:1.2.3-1build4 [7084 B] 117s Get:47 http://ftpmaster.internal/ubuntu resolute/main amd64 libtk8.6 amd64 8.6.17-1 [823 kB] 117s Get:48 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.13-tk amd64 3.13.11-1 [108 kB] 117s Get:49 http://ftpmaster.internal/ubuntu resolute/main amd64 python3.14-tk amd64 3.14.2-1 [109 kB] 117s Get:50 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-tk amd64 3.14.2-1 [11.2 kB] 117s Get:51 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pil.imagetk amd64 12.0.0-1ubuntu1 [9700 B] 117s Get:52 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-contourpy amd64 1.3.3-1 [255 kB] 117s Get:53 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cycler all 0.12.1-2 [9850 B] 117s Get:54 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-brotli amd64 1.1.0-2build6 [340 kB] 117s Get:55 http://ftpmaster.internal/ubuntu resolute/main amd64 libxslt1.1 amd64 1.1.43-0.3 [172 kB] 117s Get:56 http://ftpmaster.internal/ubuntu resolute/main amd64 python3-lxml amd64 6.0.2-1 [2333 kB] 117s Get:57 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-lz4 amd64 4.4.5+dfsg-1 [27.7 kB] 117s Get:58 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-mpmath all 1.3.0-2 [423 kB] 117s Get:59 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-sympy all 1.14.0-2 [4306 kB] 117s Get:60 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ufolib2 all 0.18.1+dfsg1-1 [33.7 kB] 117s Get:61 http://ftpmaster.internal/ubuntu resolute-proposed/main amd64 python3-all amd64 3.14.2-1 [890 B] 117s Get:62 http://ftpmaster.internal/ubuntu resolute/universe amd64 libzopfli1 amd64 1.0.3-3 [141 kB] 117s Get:63 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-zopfli amd64 0.4.0-1 [11.1 kB] 117s Get:64 http://ftpmaster.internal/ubuntu resolute/universe amd64 unicode-data all 16.0.0-1build1 [9543 kB] 117s Get:65 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-fonttools amd64 4.61.1-3 [1742 kB] 117s Get:66 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-kiwisolver amd64 1.4.10~rc0-1 [65.5 kB] 117s Get:67 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-matplotlib amd64 3.10.7+dfsg1-1 [17.2 MB] 117s Get:68 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-ase all 3.26.0-2ubuntu1 [1803 kB] 117s Get:69 http://ftpmaster.internal/ubuntu resolute/universe amd64 ase all 3.26.0-2ubuntu1 [31.1 kB] 117s Get:70 http://ftpmaster.internal/ubuntu resolute/universe amd64 libaec0 amd64 1.1.4-2 [22.9 kB] 117s Get:71 http://ftpmaster.internal/ubuntu resolute/universe amd64 libsz2 amd64 1.1.4-2 [5516 B] 117s Get:72 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-310 amd64 1.14.5+repack-4 [1432 kB] 118s Get:73 http://ftpmaster.internal/ubuntu resolute/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-4 [59.8 kB] 118s Get:74 http://ftpmaster.internal/ubuntu resolute/universe amd64 libnetcdf22 amd64 1:4.9.3-1build1 [561 kB] 118s Get:75 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-cftime amd64 1.6.5-1 [521 kB] 118s Get:76 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-iniconfig all 2.1.0-2 [6962 B] 118s Get:77 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-netcdf4 amd64 1.7.4-1 [917 kB] 118s Get:78 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pluggy all 1.6.0-2 [21.1 kB] 118s Get:79 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pycodcif amd64 3.11.0+dfsg-2 [77.4 kB] 118s Get:80 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest all 9.0.2-2 [277 kB] 118s Get:81 http://ftpmaster.internal/ubuntu resolute/universe amd64 python3-pytest-mock all 3.15.1-1 [11.9 kB] 118s Fetched 88.2 MB in 2s (39.2 MB/s) 118s Selecting previously unselected package python3.13-minimal. 118s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124923 files and directories currently installed.) 118s Preparing to unpack .../00-python3.13-minimal_3.13.11-1_amd64.deb ... 118s Unpacking python3.13-minimal (3.13.11-1) ... 118s Selecting previously unselected package python3-numpy-dev:amd64. 118s Preparing to unpack .../01-python3-numpy-dev_1%3a2.3.5+ds-3_amd64.deb ... 118s Unpacking python3-numpy-dev:amd64 (1:2.3.5+ds-3) ... 118s Selecting previously unselected package libblas3:amd64. 118s Preparing to unpack .../02-libblas3_3.12.1-7ubuntu1_amd64.deb ... 118s Unpacking libblas3:amd64 (3.12.1-7ubuntu1) ... 118s Selecting previously unselected package libgfortran5:amd64. 118s Preparing to unpack .../03-libgfortran5_15.2.0-11ubuntu1_amd64.deb ... 118s Unpacking libgfortran5:amd64 (15.2.0-11ubuntu1) ... 118s Selecting previously unselected package liblapack3:amd64. 118s Preparing to unpack .../04-liblapack3_3.12.1-7ubuntu1_amd64.deb ... 118s Unpacking liblapack3:amd64 (3.12.1-7ubuntu1) ... 118s Selecting previously unselected package python3-numpy. 118s Preparing to unpack .../05-python3-numpy_1%3a2.3.5+ds-3_amd64.deb ... 118s Unpacking python3-numpy (1:2.3.5+ds-3) ... 118s Selecting previously unselected package python3.13. 118s Preparing to unpack .../06-python3.13_3.13.11-1_amd64.deb ... 118s Unpacking python3.13 (3.13.11-1) ... 118s Selecting previously unselected package fonts-font-awesome. 118s Preparing to unpack .../07-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1build1_all.deb ... 118s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 118s Selecting previously unselected package node-popper2. 118s Preparing to unpack .../08-node-popper2_2.11.2-9_all.deb ... 118s Unpacking node-popper2 (2.11.2-9) ... 118s Selecting previously unselected package libjs-bootstrap5. 118s Preparing to unpack .../09-libjs-bootstrap5_5.3.8+dfsg-2_all.deb ... 118s Unpacking libjs-bootstrap5 (5.3.8+dfsg-2) ... 118s Selecting previously unselected package libjs-jquery. 118s Preparing to unpack .../10-libjs-jquery_3.7.1+dfsg+~3.5.33-1build1_all.deb ... 118s Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 118s Selecting previously unselected package libjs-jquery-ui. 118s Preparing to unpack .../11-libjs-jquery-ui_1.13.2+dfsg-1build1_all.deb ... 118s Unpacking libjs-jquery-ui (1.13.2+dfsg-1build1) ... 118s Selecting previously unselected package python3-decorator. 118s Preparing to unpack .../12-python3-decorator_5.2.1-2_all.deb ... 118s Unpacking python3-decorator (5.2.1-2) ... 118s Selecting previously unselected package libqhull-r8.0:amd64. 118s Preparing to unpack .../13-libqhull-r8.0_2020.2-8_amd64.deb ... 118s Unpacking libqhull-r8.0:amd64 (2020.2-8) ... 118s Selecting previously unselected package python3-scipy. 118s Preparing to unpack .../14-python3-scipy_1.16.3-3_amd64.deb ... 118s Unpacking python3-scipy (1.16.3-3) ... 119s Selecting previously unselected package libsymspg2:amd64. 119s Preparing to unpack .../15-libsymspg2_2.6.0-3build1_amd64.deb ... 119s Unpacking libsymspg2:amd64 (2.6.0-3build1) ... 119s Selecting previously unselected package python3-spglib. 119s Preparing to unpack .../16-python3-spglib_2.6.0-3build1_amd64.deb ... 119s Unpacking python3-spglib (2.6.0-3build1) ... 119s Selecting previously unselected package fonts-dejavu-mono. 119s Preparing to unpack .../17-fonts-dejavu-mono_2.37-8build1_all.deb ... 119s Unpacking fonts-dejavu-mono (2.37-8build1) ... 119s Selecting previously unselected package fonts-dejavu-core. 119s Preparing to unpack .../18-fonts-dejavu-core_2.37-8build1_all.deb ... 119s Unpacking fonts-dejavu-core (2.37-8build1) ... 119s Selecting previously unselected package fonts-lyx. 119s Preparing to unpack .../19-fonts-lyx_2.5.0~RC2-3_all.deb ... 119s Unpacking fonts-lyx (2.5.0~RC2-3) ... 119s Selecting previously unselected package python-matplotlib-data. 119s Preparing to unpack .../20-python-matplotlib-data_3.10.7+dfsg1-1_all.deb ... 119s Unpacking python-matplotlib-data (3.10.7+dfsg1-1) ... 119s Selecting previously unselected package libgomp1:amd64. 119s Preparing to unpack .../21-libgomp1_15.2.0-11ubuntu1_amd64.deb ... 119s Unpacking libgomp1:amd64 (15.2.0-11ubuntu1) ... 119s Selecting previously unselected package libimagequant0:amd64. 119s Preparing to unpack .../22-libimagequant0_2.18.0-1build1_amd64.deb ... 119s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 119s Selecting previously unselected package libjpeg-turbo8:amd64. 119s Preparing to unpack .../23-libjpeg-turbo8_2.1.5-4ubuntu2_amd64.deb ... 119s Unpacking libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 119s Selecting previously unselected package libjpeg8:amd64. 119s Preparing to unpack .../24-libjpeg8_8c-2ubuntu11_amd64.deb ... 119s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 119s Selecting previously unselected package liblcms2-2:amd64. 119s Preparing to unpack .../25-liblcms2-2_2.17-1_amd64.deb ... 119s Unpacking liblcms2-2:amd64 (2.17-1) ... 119s Selecting previously unselected package libopenjp2-7:amd64. 119s Preparing to unpack .../26-libopenjp2-7_2.5.4-1_amd64.deb ... 119s Unpacking libopenjp2-7:amd64 (2.5.4-1) ... 119s Selecting previously unselected package libgraphite2-3:amd64. 119s Preparing to unpack .../27-libgraphite2-3_1.3.14-11ubuntu1_amd64.deb ... 119s Unpacking libgraphite2-3:amd64 (1.3.14-11ubuntu1) ... 119s Selecting previously unselected package libharfbuzz0b:amd64. 119s Preparing to unpack .../28-libharfbuzz0b_12.3.0-4_amd64.deb ... 119s Unpacking libharfbuzz0b:amd64 (12.3.0-4) ... 119s Selecting previously unselected package libraqm0:amd64. 119s Preparing to unpack .../29-libraqm0_0.10.3-1_amd64.deb ... 119s Unpacking libraqm0:amd64 (0.10.3-1) ... 119s Selecting previously unselected package libdeflate0:amd64. 119s Preparing to unpack .../30-libdeflate0_1.23-2_amd64.deb ... 119s Unpacking libdeflate0:amd64 (1.23-2) ... 119s Selecting previously unselected package libjbig0:amd64. 119s Preparing to unpack .../31-libjbig0_2.1-6.1ubuntu3_amd64.deb ... 119s Unpacking libjbig0:amd64 (2.1-6.1ubuntu3) ... 119s Selecting previously unselected package liblerc4:amd64. 119s Preparing to unpack .../32-liblerc4_4.0.0+ds-5ubuntu2_amd64.deb ... 119s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 119s Selecting previously unselected package libsharpyuv0:amd64. 119s Preparing to unpack .../33-libsharpyuv0_1.5.0-0.1build1_amd64.deb ... 119s Unpacking libsharpyuv0:amd64 (1.5.0-0.1build1) ... 119s Selecting previously unselected package libwebp7:amd64. 119s Preparing to unpack .../34-libwebp7_1.5.0-0.1build1_amd64.deb ... 119s Unpacking libwebp7:amd64 (1.5.0-0.1build1) ... 119s Selecting previously unselected package libtiff6:amd64. 119s Preparing to unpack .../35-libtiff6_4.7.0-3ubuntu3_amd64.deb ... 119s Unpacking libtiff6:amd64 (4.7.0-3ubuntu3) ... 119s Selecting previously unselected package libwebpdemux2:amd64. 119s Preparing to unpack .../36-libwebpdemux2_1.5.0-0.1build1_amd64.deb ... 119s Unpacking libwebpdemux2:amd64 (1.5.0-0.1build1) ... 119s Selecting previously unselected package libwebpmux3:amd64. 119s Preparing to unpack .../37-libwebpmux3_1.5.0-0.1build1_amd64.deb ... 119s Unpacking libwebpmux3:amd64 (1.5.0-0.1build1) ... 119s Selecting previously unselected package python3-pil:amd64. 119s Preparing to unpack .../38-python3-pil_12.0.0-1ubuntu1_amd64.deb ... 119s Unpacking python3-pil:amd64 (12.0.0-1ubuntu1) ... 119s Selecting previously unselected package libtcl8.6:amd64. 119s Preparing to unpack .../39-libtcl8.6_8.6.17+dfsg-1_amd64.deb ... 119s Unpacking libtcl8.6:amd64 (8.6.17+dfsg-1) ... 119s Selecting previously unselected package fontconfig-config. 119s Preparing to unpack .../40-fontconfig-config_2.15.0-2.4ubuntu1_amd64.deb ... 119s Unpacking fontconfig-config (2.15.0-2.4ubuntu1) ... 119s Selecting previously unselected package libfontconfig1:amd64. 119s Preparing to unpack .../41-libfontconfig1_2.15.0-2.4ubuntu1_amd64.deb ... 119s Unpacking libfontconfig1:amd64 (2.15.0-2.4ubuntu1) ... 119s Selecting previously unselected package libxrender1:amd64. 119s Preparing to unpack .../42-libxrender1_1%3a0.9.12-1_amd64.deb ... 119s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 119s Selecting previously unselected package libxft2:amd64. 119s Preparing to unpack .../43-libxft2_2.3.6-1build2_amd64.deb ... 119s Unpacking libxft2:amd64 (2.3.6-1build2) ... 119s Selecting previously unselected package x11-common. 119s Preparing to unpack .../44-x11-common_1%3a7.7+24ubuntu1_all.deb ... 119s Unpacking x11-common (1:7.7+24ubuntu1) ... 119s Selecting previously unselected package libxss1:amd64. 119s Preparing to unpack .../45-libxss1_1%3a1.2.3-1build4_amd64.deb ... 119s Unpacking libxss1:amd64 (1:1.2.3-1build4) ... 119s Selecting previously unselected package libtk8.6:amd64. 119s Preparing to unpack .../46-libtk8.6_8.6.17-1_amd64.deb ... 119s Unpacking libtk8.6:amd64 (8.6.17-1) ... 119s Selecting previously unselected package python3.13-tk. 119s Preparing to unpack .../47-python3.13-tk_3.13.11-1_amd64.deb ... 119s Unpacking python3.13-tk (3.13.11-1) ... 119s Selecting previously unselected package python3.14-tk. 119s Preparing to unpack .../48-python3.14-tk_3.14.2-1_amd64.deb ... 119s Unpacking python3.14-tk (3.14.2-1) ... 119s Selecting previously unselected package python3-tk. 119s Preparing to unpack .../49-python3-tk_3.14.2-1_amd64.deb ... 119s Unpacking python3-tk (3.14.2-1) ... 119s Selecting previously unselected package python3-pil.imagetk:amd64. 119s Preparing to unpack .../50-python3-pil.imagetk_12.0.0-1ubuntu1_amd64.deb ... 119s Unpacking python3-pil.imagetk:amd64 (12.0.0-1ubuntu1) ... 119s Selecting previously unselected package python3-contourpy. 119s Preparing to unpack .../51-python3-contourpy_1.3.3-1_amd64.deb ... 119s Unpacking python3-contourpy (1.3.3-1) ... 119s Selecting previously unselected package python3-cycler. 119s Preparing to unpack .../52-python3-cycler_0.12.1-2_all.deb ... 119s Unpacking python3-cycler (0.12.1-2) ... 119s Selecting previously unselected package python3-brotli. 119s Preparing to unpack .../53-python3-brotli_1.1.0-2build6_amd64.deb ... 119s Unpacking python3-brotli (1.1.0-2build6) ... 119s Selecting previously unselected package libxslt1.1:amd64. 119s Preparing to unpack .../54-libxslt1.1_1.1.43-0.3_amd64.deb ... 119s Unpacking libxslt1.1:amd64 (1.1.43-0.3) ... 119s Selecting previously unselected package python3-lxml:amd64. 119s Preparing to unpack .../55-python3-lxml_6.0.2-1_amd64.deb ... 119s Unpacking python3-lxml:amd64 (6.0.2-1) ... 119s Selecting previously unselected package python3-lz4. 119s Preparing to unpack .../56-python3-lz4_4.4.5+dfsg-1_amd64.deb ... 119s Unpacking python3-lz4 (4.4.5+dfsg-1) ... 119s Selecting previously unselected package python3-mpmath. 119s Preparing to unpack .../57-python3-mpmath_1.3.0-2_all.deb ... 119s Unpacking python3-mpmath (1.3.0-2) ... 119s Selecting previously unselected package python3-sympy. 119s Preparing to unpack .../58-python3-sympy_1.14.0-2_all.deb ... 119s Unpacking python3-sympy (1.14.0-2) ... 120s Selecting previously unselected package python3-ufolib2. 120s Preparing to unpack .../59-python3-ufolib2_0.18.1+dfsg1-1_all.deb ... 120s Unpacking python3-ufolib2 (0.18.1+dfsg1-1) ... 120s Selecting previously unselected package python3-all. 120s Preparing to unpack .../60-python3-all_3.14.2-1_amd64.deb ... 120s Unpacking python3-all (3.14.2-1) ... 120s Selecting previously unselected package libzopfli1. 120s Preparing to unpack .../61-libzopfli1_1.0.3-3_amd64.deb ... 120s Unpacking libzopfli1 (1.0.3-3) ... 120s Selecting previously unselected package python3-zopfli. 120s Preparing to unpack .../62-python3-zopfli_0.4.0-1_amd64.deb ... 120s Unpacking python3-zopfli (0.4.0-1) ... 120s Selecting previously unselected package unicode-data. 120s Preparing to unpack .../63-unicode-data_16.0.0-1build1_all.deb ... 120s Unpacking unicode-data (16.0.0-1build1) ... 120s Selecting previously unselected package python3-fonttools. 120s Preparing to unpack .../64-python3-fonttools_4.61.1-3_amd64.deb ... 120s Unpacking python3-fonttools (4.61.1-3) ... 120s Selecting previously unselected package python3-kiwisolver. 120s Preparing to unpack .../65-python3-kiwisolver_1.4.10~rc0-1_amd64.deb ... 120s Unpacking python3-kiwisolver (1.4.10~rc0-1) ... 120s Selecting previously unselected package python3-matplotlib. 120s Preparing to unpack .../66-python3-matplotlib_3.10.7+dfsg1-1_amd64.deb ... 120s Unpacking python3-matplotlib (3.10.7+dfsg1-1) ... 120s Selecting previously unselected package python3-ase. 120s Preparing to unpack .../67-python3-ase_3.26.0-2ubuntu1_all.deb ... 120s Unpacking python3-ase (3.26.0-2ubuntu1) ... 120s Selecting previously unselected package ase. 120s Preparing to unpack .../68-ase_3.26.0-2ubuntu1_all.deb ... 120s Unpacking ase (3.26.0-2ubuntu1) ... 120s Selecting previously unselected package libaec0:amd64. 120s Preparing to unpack .../69-libaec0_1.1.4-2_amd64.deb ... 120s Unpacking libaec0:amd64 (1.1.4-2) ... 120s Selecting previously unselected package libsz2:amd64. 120s Preparing to unpack .../70-libsz2_1.1.4-2_amd64.deb ... 120s Unpacking libsz2:amd64 (1.1.4-2) ... 120s Selecting previously unselected package libhdf5-310:amd64. 120s Preparing to unpack .../71-libhdf5-310_1.14.5+repack-4_amd64.deb ... 120s Unpacking libhdf5-310:amd64 (1.14.5+repack-4) ... 120s Selecting previously unselected package libhdf5-hl-310:amd64. 120s Preparing to unpack .../72-libhdf5-hl-310_1.14.5+repack-4_amd64.deb ... 120s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-4) ... 120s Selecting previously unselected package libnetcdf22:amd64. 120s Preparing to unpack .../73-libnetcdf22_1%3a4.9.3-1build1_amd64.deb ... 120s Unpacking libnetcdf22:amd64 (1:4.9.3-1build1) ... 120s Selecting previously unselected package python3-cftime. 120s Preparing to unpack .../74-python3-cftime_1.6.5-1_amd64.deb ... 120s Unpacking python3-cftime (1.6.5-1) ... 120s Selecting previously unselected package python3-iniconfig. 120s Preparing to unpack .../75-python3-iniconfig_2.1.0-2_all.deb ... 120s Unpacking python3-iniconfig (2.1.0-2) ... 120s Selecting previously unselected package python3-netcdf4. 120s Preparing to unpack .../76-python3-netcdf4_1.7.4-1_amd64.deb ... 120s Unpacking python3-netcdf4 (1.7.4-1) ... 120s Selecting previously unselected package python3-pluggy. 120s Preparing to unpack .../77-python3-pluggy_1.6.0-2_all.deb ... 120s Unpacking python3-pluggy (1.6.0-2) ... 120s Selecting previously unselected package python3-pycodcif. 120s Preparing to unpack .../78-python3-pycodcif_3.11.0+dfsg-2_amd64.deb ... 120s Unpacking python3-pycodcif (3.11.0+dfsg-2) ... 120s Selecting previously unselected package python3-pytest. 120s Preparing to unpack .../79-python3-pytest_9.0.2-2_all.deb ... 120s Unpacking python3-pytest (9.0.2-2) ... 120s Selecting previously unselected package python3-pytest-mock. 120s Preparing to unpack .../80-python3-pytest-mock_3.15.1-1_all.deb ... 120s Unpacking python3-pytest-mock (3.15.1-1) ... 120s Setting up libgraphite2-3:amd64 (1.3.14-11ubuntu1) ... 120s Setting up liblcms2-2:amd64 (2.17-1) ... 120s Setting up python3-iniconfig (2.1.0-2) ... 120s Setting up libsharpyuv0:amd64 (1.5.0-0.1build1) ... 120s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu2) ... 120s Setting up libxrender1:amd64 (1:0.9.12-1) ... 120s Setting up python3-lz4 (4.4.5+dfsg-1) ... 120s Setting up fonts-lyx (2.5.0~RC2-3) ... 120s Setting up x11-common (1:7.7+24ubuntu1) ... 121s Setting up libdeflate0:amd64 (1.23-2) ... 121s Setting up libqhull-r8.0:amd64 (2020.2-8) ... 121s Setting up python3-pycodcif (3.11.0+dfsg-2) ... 121s Setting up libgomp1:amd64 (15.2.0-11ubuntu1) ... 121s Setting up libjbig0:amd64 (2.1-6.1ubuntu3) ... 121s Setting up libaec0:amd64 (1.1.4-2) ... 121s Setting up unicode-data (16.0.0-1build1) ... 121s Setting up libsymspg2:amd64 (2.6.0-3build1) ... 121s Setting up python3-decorator (5.2.1-2) ... 121s Setting up libblas3:amd64 (3.12.1-7ubuntu1) ... 121s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 121s Setting up libzopfli1 (1.0.3-3) ... 121s Setting up python3-brotli (1.1.0-2build6) ... 121s Setting up python3-cycler (0.12.1-2) ... 121s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 121s Setting up fonts-dejavu-mono (2.37-8build1) ... 121s Setting up python3-kiwisolver (1.4.10~rc0-1) ... 121s Setting up python3-numpy-dev:amd64 (1:2.3.5+ds-3) ... 121s Setting up libtcl8.6:amd64 (8.6.17+dfsg-1) ... 121s Setting up fonts-dejavu-core (2.37-8build1) ... 121s Setting up libjpeg-turbo8:amd64 (2.1.5-4ubuntu2) ... 121s Setting up libgfortran5:amd64 (15.2.0-11ubuntu1) ... 121s Setting up python3-pluggy (1.6.0-2) ... 121s Setting up libwebp7:amd64 (1.5.0-0.1build1) ... 121s Setting up node-popper2 (2.11.2-9) ... 121s Setting up libxslt1.1:amd64 (1.1.43-0.3) ... 121s Setting up libopenjp2-7:amd64 (2.5.4-1) ... 121s Setting up python3.13-minimal (3.13.11-1) ... 122s Setting up libharfbuzz0b:amd64 (12.3.0-4) ... 122s Setting up libxss1:amd64 (1:1.2.3-1build4) ... 122s Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1build1) ... 122s Setting up python3-mpmath (1.3.0-2) ... 122s Setting up python-matplotlib-data (3.10.7+dfsg1-1) ... 122s Setting up libwebpmux3:amd64 (1.5.0-0.1build1) ... 122s Setting up libjs-bootstrap5 (5.3.8+dfsg-2) ... 122s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1build1) ... 123s Setting up libsz2:amd64 (1.1.4-2) ... 123s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 123s Setting up python3-sympy (1.14.0-2) ... 129s /usr/lib/python3/dist-packages/sympy/testing/runtests.py:283: SyntaxWarning: 'return' in a 'finally' block 129s return p.returncode 130s Setting up liblapack3:amd64 (3.12.1-7ubuntu1) ... 130s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 130s Setting up python3.13 (3.13.11-1) ... 130s Setting up fontconfig-config (2.15.0-2.4ubuntu1) ... 130s Setting up python3-pytest (9.0.2-2) ... 131s Setting up libwebpdemux2:amd64 (1.5.0-0.1build1) ... 131s Setting up python3-all (3.14.2-1) ... 131s Setting up python3-zopfli (0.4.0-1) ... 131s Setting up libjs-jquery-ui (1.13.2+dfsg-1build1) ... 131s Setting up libraqm0:amd64 (0.10.3-1) ... 131s Setting up python3-numpy (1:2.3.5+ds-3) ... 133s Setting up libhdf5-310:amd64 (1.14.5+repack-4) ... 133s Setting up python3-pytest-mock (3.15.1-1) ... 133s Setting up python3-lxml:amd64 (6.0.2-1) ... 133s Setting up libtiff6:amd64 (4.7.0-3ubuntu3) ... 133s Setting up python3-contourpy (1.3.3-1) ... 133s Setting up libfontconfig1:amd64 (2.15.0-2.4ubuntu1) ... 133s Setting up python3-spglib (2.6.0-3build1) ... 133s Setting up libhdf5-hl-310:amd64 (1.14.5+repack-4) ... 133s Setting up libxft2:amd64 (2.3.6-1build2) ... 133s Setting up python3-scipy (1.16.3-3) ... 138s Setting up libtk8.6:amd64 (8.6.17-1) ... 138s Setting up libnetcdf22:amd64 (1:4.9.3-1build1) ... 138s Setting up python3.13-tk (3.13.11-1) ... 138s Setting up python3-pil:amd64 (12.0.0-1ubuntu1) ... 138s Setting up python3-cftime (1.6.5-1) ... 138s Setting up python3-netcdf4 (1.7.4-1) ... 138s Setting up python3.14-tk (3.14.2-1) ... 139s Setting up python3-tk (3.14.2-1) ... 139s Setting up python3-pil.imagetk:amd64 (12.0.0-1ubuntu1) ... 139s Setting up python3-fonttools (4.61.1-3) ... 140s Setting up python3-ufolib2 (0.18.1+dfsg1-1) ... 140s Setting up python3-matplotlib (3.10.7+dfsg1-1) ... 142s Setting up python3-ase (3.26.0-2ubuntu1) ... 144s Setting up ase (3.26.0-2ubuntu1) ... 144s Processing triggers for libc-bin (2.42-2ubuntu4) ... 144s Processing triggers for systemd (259-1ubuntu2) ... 144s Processing triggers for man-db (2.13.1-1) ... 145s autopkgtest [10:38:04]: test environment configured for cross building 145s autopkgtest [10:38:04]: test command1: for py in $(py3versions -s); do cd "$AUTOPKGTEST_TMP"; $py -m ase test --pytest -p no:cacheprovider; done 145s autopkgtest [10:38:04]: test command1: [----------------------- 145s About to run pytest with these parameters: 145s -p 145s no:cacheprovider 149s ============================= test session starts ============================== 149s platform linux -- Python 3.13.11, pytest-9.0.2, pluggy-1.6.0 149s 149s Libraries 149s ========= 149s 149s ase-3.26.0 /usr/lib/python3/dist-packages/ase 149s numpy-2.3.5 /usr/lib/python3/dist-packages/numpy 149s scipy-1.16.3 /usr/lib/python3/dist-packages/scipy 149s matplotlib-3.10.7+dfsg1 /usr/lib/python3/dist-packages/matplotlib 149s spglib-2.6.0 /usr/lib/python3/dist-packages/spglib 149s ase_ext not installed 149s flask not installed 149s psycopg2 not installed 149s pyamg not installed 149s 149s 149s Calculators 149s =========== 149s Config: No configuration file specified 149s Datafiles: ase-datafiles package not installed 149s 149s [ ] abinit not installed: 'abinit' 149s [ ] ace cfg= 149s [ ] aims not installed: 'aims' 149s [ ] amber cfg= 149s [ ] asap not installed: asap3 149s [ ] castep not installed: 'castep' 149s [ ] cp2k not installed: 'cp2k' 149s [ ] crystal cfg= 149s [ ] demon cfg= 149s [ ] demonnano cfg= 149s [ ] dftb not installed: No 'dftb' section 149s [ ] dftd3 not installed: 'dftd3' 149s [ ] dmol cfg= 149s [ ] elk not installed: 'elk' 149s [ ] espresso not installed: 'espresso' 149s [ ] exciting not installed: 'exciting' 149s [ ] gamess_us cfg= 149s [ ] gaussian cfg= 149s [ ] gpaw not installed: gpaw 149s [ ] gromacs not installed: 'gromacs' 149s [ ] gulp cfg= 149s [ ] hotbit cfg= 149s [ ] lammpslib not installed: missing python wrappers: cannot import lammps 149s [ ] lammpsrun not installed: 'lammps' 149s [ ] mopac not installed: No 'mopac' section 149s [ ] nwchem not installed: No 'nwchem' section 149s [ ] octopus not installed: 'octopus' 149s [ ] onetep cfg= 149s [ ] openmx not installed: 'openmx' 149s [ ] orca not installed: 'orca' 149s [ ] plumed not installed: 149s [ ] psi4 not installed: psi4 149s [ ] qchem cfg= 149s [ ] siesta not installed: No 'siesta' section 149s [ ] turbomole cfg= 149s [ ] vasp not installed: 'vasp' 149s 149s * Use --calculators option to select calculators. 149s 149s * See "ase test --help-calculators" on how to configure calculators. 149s 149s * This listing only includes external calculators known by the test 149s system. Others are "configured" by setting an environment variable 149s like "ASE_xxx_COMMAND" in order to allow tests to run. Please see 149s the documentation of that individual calculator. 149s 149s 149s rootdir: /usr/lib/python3/dist-packages/ase/test 149s configfile: pytest.ini 149s plugins: typeguard-4.4.4, mock-3.15.1 149s collected 3614 items 149s 149s atoms/test_atom.py .. [ 0%] 149s atoms/test_atom_scaled_pos.py ... [ 0%] 149s atoms/test_atoms.py .............. [ 0%] 149s atoms/test_atoms_angle.py . [ 0%] 149s atoms/test_atoms_distance.py .. [ 0%] 149s atoms/test_atoms_formula.py . [ 0%] 149s atoms/test_atoms_get_duplicates.py ... [ 0%] 149s atoms/test_atoms_get_positions.py ... [ 0%] 149s atoms/test_atoms_getitem.py ............. [ 1%] 149s atoms/test_atoms_indices.py . [ 1%] 149s atoms/test_atoms_info_copy.py . [ 1%] 149s atoms/test_atoms_instantiation.py .... [ 1%] 149s atoms/test_build.py . [ 1%] 149s atoms/test_center.py ........... [ 1%] 149s atoms/test_center_nonperiodic.py . [ 1%] 149s atoms/test_compare_atoms.py . [ 1%] 149s atoms/test_deprecated_get_set.py ... [ 1%] 149s atoms/test_get_angles.py . [ 1%] 149s atoms/test_h2.py . [ 1%] 149s atoms/test_mic.py . [ 1%] 149s atoms/test_momenta_velocities.py ... [ 1%] 149s atoms/test_permute_axes.py . [ 1%] 149s atoms/test_rotate.py . [ 2%] 149s atoms/test_rotate_euler.py . [ 2%] 149s atoms/test_scaled_positions.py . [ 2%] 149s atoms/test_set_get_angle.py . [ 2%] 149s bandstructure/test_bandpath.py ....... [ 2%] 149s bandstructure/test_bandstructure.py .... [ 2%] 149s bandstructure/test_bandstructure_json.py . [ 2%] 151s bandstructure/test_bandstructure_many.py ....................... [ 3%] 151s bandstructure/test_bandstructure_transform_mcl.py . [ 3%] 151s bandstructure/test_resolve_custom_kpoints.py ..... [ 3%] 151s bravais/test_2d_cell_pbc.py ..... [ 3%] 151s bravais/test_bravais_type_engine.py ................. [ 3%] 151s bravais/test_eps.py .. [ 3%] 151s bravais/test_hex.py . [ 3%] 152s bravais/test_lattices.py ............................................... [ 5%] 152s .. [ 5%] 152s bravais/test_line_lattice.py . [ 5%] 152s bravais/test_main.py ......................... [ 6%] 152s bravais/test_orcc_mcl.py . [ 6%] 152s bravais/test_reduce.py . [ 6%] 152s bravais/test_standard_form.py ....................... [ 6%] 152s build_/test_attach.py .... [ 6%] 152s build_/test_build_bulk.py .............................................. [ 8%] 152s ........................................................................ [ 10%] 152s ........................................................................ [ 12%] 152s .................................................. [ 13%] 152s build_/test_bulk.py .......... [ 13%] 152s build_/test_connected.py .... [ 13%] 152s build_/test_minimize_rotation_and_translation.py .. [ 13%] 153s build_/test_supercells.py .............................................. [ 15%] 155s .......................... [ 15%] 155s build_/test_surface.py ... [ 15%] 155s build_/test_surface_stack.py . [ 15%] 155s build_/test_surface_terminations.py . [ 16%] 155s calculator/abinit/test_abinit_cmdline.py s [ 16%] 155s calculator/abinit/test_main.py sssssssss [ 16%] 155s calculator/ace/test_ace.py s [ 16%] 155s calculator/ace/test_ace_calculator.py . [ 16%] 155s calculator/aims/test_H2O_aims.py s [ 16%] 155s calculator/aims/test_aims_interface.py s [ 16%] 155s calculator/aims/test_version.py . [ 16%] 155s calculator/amber/test_amber.py s [ 16%] 155s calculator/castep/test_castep_interface.py ........ [ 16%] 155s calculator/cp2k/test_cp2k_H2_None.py s [ 16%] 155s calculator/cp2k/test_cp2k_dcd.py s [ 16%] 155s calculator/cp2k/test_cp2k_many.py ssssssssssss [ 17%] 155s calculator/cp2k/test_cp2k_restart.py . [ 17%] 155s calculator/cp2k/test_cp2k_stress.py s [ 17%] 155s calculator/crystal/test_bulk.py s [ 17%] 155s calculator/crystal/test_graphene.py s [ 17%] 155s calculator/crystal/test_molecule.py s [ 17%] 155s calculator/demon/test_h2o.py s [ 17%] 155s calculator/demon/test_h2o_xas_xes.py s [ 17%] 155s calculator/demonnano/test_h2o.py s [ 17%] 155s calculator/dftb/test_dftb_bandstructure.py s [ 17%] 155s calculator/dftb/test_dftb_relax_bulk.py .s [ 17%] 155s calculator/dftb/test_dftb_relax_dimer.py s [ 17%] 155s calculator/dftb/test_dftb_relax_surface.py s [ 17%] 155s calculator/dftb/test_dipole.py s [ 17%] 155s calculator/dftb/test_xtb_static.py s [ 17%] 155s calculator/dmol/test_Al_dmol.py s [ 17%] 155s calculator/dmol/test_water_dmol.py s [ 17%] 155s calculator/elk/test_elk.py ss [ 17%] 155s calculator/espresso/test_espresso.py ..ssss.. [ 17%] 155s calculator/exciting/test_exciting.py sssss [ 17%] 155s calculator/exciting/test_runner.py ssss. [ 18%] 155s calculator/gamess_us/test_basis_ecp.py s [ 18%] 155s calculator/gamess_us/test_gamess_us.py sssss [ 18%] 155s calculator/gaussian/test_h2of.py s [ 18%] 155s calculator/gaussian/test_optimizer_irc.py ss [ 18%] 155s calculator/gaussian/test_water.py s [ 18%] 155s calculator/gpaw_/test_no_spin_and_spin.py s [ 18%] 155s calculator/gpaw_/test_read_text_output.py . [ 18%] 156s calculator/gpaw_/test_wannier.py ...........................ssssssssssss [ 19%] 156s ssssssssssssssssssssssssssssssssssssssssssssssssssssssss....ssss [ 21%] 156s calculator/gromacs/test_gromacs.py .ss [ 21%] 156s calculator/kim/test_cutoff_skin.py s [ 21%] 156s calculator/kim/test_energy_forces_stress.py s [ 21%] 156s calculator/kim/test_modify_parameters.py s [ 21%] 156s calculator/kim/test_multi_neighlist.py s [ 21%] 156s calculator/kim/test_relax.py s [ 21%] 156s calculator/kim/test_single_atom.py s [ 21%] 156s calculator/kim/test_update_coords.py s [ 21%] 156s calculator/kim/test_update_neighbor_parameters.py s [ 21%] 156s calculator/lammps/test_prism.py ........................................ [ 22%] 156s . [ 22%] 156s calculator/lammpslib/test_Pt_stress_cellopt.py s [ 22%] 156s calculator/lammpslib/test_lammpslib_change_cell_bcs.py s [ 22%] 156s calculator/lammpslib/test_lammpslib_neighlist_bug.py s [ 22%] 156s calculator/lammpslib/test_lammpslib_post_changebox_cmds.py s [ 22%] 156s calculator/lammpslib/test_lammpslib_simple.py sssss [ 22%] 156s calculator/lammpslib/test_lammpslib_small_nonperiodic.py s [ 22%] 156s calculator/lammpsrun/test_Ar_minimize.py ss [ 23%] 156s calculator/lammpsrun/test_NaCl_minimize.py s [ 23%] 156s calculator/lammpsrun/test_Pt_md_constraints_multistep.py s [ 23%] 156s calculator/lammpsrun/test_Pt_stress_cellopt.py s [ 23%] 156s calculator/lammpsrun/test_lammps_units.py s [ 23%] 156s calculator/lammpsrun/test_no_data_file_wrap.py s [ 23%] 156s calculator/nwchem/test_nwchem_bands.py s [ 23%] 156s calculator/nwchem/test_nwchem_broken_symmetry.py s [ 23%] 156s calculator/nwchem/test_nwchem_cmdline.py s [ 23%] 156s calculator/nwchem/test_nwchem_eigenvalues.py ss [ 23%] 156s calculator/nwchem/test_nwchem_h3o2m.py s [ 23%] 156s calculator/nwchem/test_nwchem_multitask.py sss [ 23%] 156s calculator/nwchem/test_nwchem_parser.py . [ 23%] 156s calculator/nwchem/test_nwchem_runmany.py ssssssssssssss [ 23%] 156s calculator/nwchem/test_nwchem_spin_symmetry.py s [ 23%] 156s calculator/nwchem/test_nwchem_stress.py s [ 23%] 156s calculator/nwchem/test_nwchem_version.py s [ 23%] 156s calculator/octopus/test_big.py ss [ 23%] 156s calculator/onetep/test_onetep.py s [ 24%] 156s calculator/openmx/test_md.py s [ 24%] 156s calculator/openmx/test_version.py . [ 24%] 156s calculator/plumed/test_plumed.py ssssss [ 24%] 156s calculator/psi4/test_psi4_HF_3_21G.py s [ 24%] 156s calculator/qchem/test_qchem_calculator.py s [ 24%] 156s calculator/siesta/lrtddft/test_siesta_lrtddft.py s [ 24%] 156s calculator/siesta/lrtddft/test_siesta_raman.py s [ 24%] 156s calculator/siesta/test_bandstructure.py s [ 24%] 156s calculator/siesta/test_dos.py s [ 24%] 156s calculator/siesta/test_fdf_io.py s [ 24%] 156s calculator/siesta/test_siesta_read_eigenvalues.py .s [ 24%] 156s calculator/siesta/test_siesta_version.py . [ 24%] 156s calculator/siesta/test_siesta_zmat.py sss [ 24%] 156s calculator/siesta/test_write_input.py sssss [ 24%] 156s calculator/socketio/test_h2_stiffness.py sssss [ 24%] 156s calculator/socketio/test_integration.py ss [ 24%] 156s calculator/socketio/test_ipi_protocol_bfgs.py ss [ 24%] 157s calculator/socketio/test_python_interface.py . [ 25%] 157s calculator/socketio/test_socket_io_mpi_line.py . [ 25%] 157s calculator/test_al.py s [ 25%] 157s calculator/test_bond_polarizability.py ... [ 25%] 157s calculator/test_calculator.py .. [ 25%] 157s calculator/test_ch4_energy.py sssssssssss [ 25%] 157s calculator/test_command.py ............................................. [ 26%] 157s ............... [ 27%] 157s calculator/test_dftd3.py sssssssssssssss [ 27%] 157s calculator/test_eam.py . [ 27%] 157s calculator/test_eam_run.py sssssssss [ 27%] 157s calculator/test_fd.py ... [ 27%] 157s calculator/test_gulp.py s [ 27%] 157s calculator/test_gulp_opt.py s [ 28%] 157s calculator/test_h2.py sss [ 28%] 157s calculator/test_h2_bond_force.py sssssss [ 28%] 157s calculator/test_h2morse.py ..... [ 28%] 158s calculator/test_harmonic.py ...... [ 28%] 158s calculator/test_lj.py ....... [ 28%] 158s calculator/test_mopac.py ss [ 28%] 158s calculator/test_mopac_version.py ... [ 28%] 158s calculator/test_morse.py ..... [ 29%] 158s calculator/test_orca.py .sssssss [ 29%] 158s calculator/test_orca_qmmm.py s [ 29%] 158s calculator/test_polarizability.py . [ 29%] 158s calculator/test_si_stress.py sssss [ 29%] 159s calculator/test_subprocess_calculator.py ..s. [ 29%] 159s calculator/test_tersoff.py ...... [ 29%] 159s calculator/test_traj.py sssss.sss [ 29%] 159s calculator/test_ts09.py .. [ 30%] 159s calculator/turbomole/test_turbomole_2h2o.py s [ 30%] 159s calculator/turbomole/test_turbomole_H2.py ss [ 30%] 159s calculator/turbomole/test_turbomole_au13.py s [ 30%] 159s calculator/turbomole/test_turbomole_calculator.py .... [ 30%] 159s calculator/turbomole/test_turbomole_h2o.py ss [ 30%] 159s calculator/turbomole/test_turbomole_h3o2m.py s [ 30%] 159s calculator/turbomole/test_turbomole_optimizer.py ss [ 30%] 159s calculator/turbomole/test_turbomole_parameters.py ............. [ 30%] 159s calculator/turbomole/test_turbomole_qmmm.py s [ 30%] 159s calculator/turbomole/test_turbomole_reader.py . [ 30%] 159s calculator/turbomole/test_turbomole_statpt.py s [ 30%] 159s calculator/vasp/test_chgcar.py . [ 30%] 159s calculator/vasp/test_vasp_Al_volrelax.py s [ 30%] 160s calculator/vasp/test_vasp_calculator.py ...................... [ 31%] 160s calculator/vasp/test_vasp_charge.py ssssss [ 31%] 160s calculator/vasp/test_vasp_check_state.py s [ 31%] 160s calculator/vasp/test_vasp_co.py s [ 31%] 160s calculator/vasp/test_vasp_converge.py . [ 31%] 160s calculator/vasp/test_vasp_errors.py . [ 31%] 160s calculator/vasp/test_vasp_freq.py s [ 31%] 160s calculator/vasp/test_vasp_get_dos.py s [ 31%] 160s calculator/vasp/test_vasp_incar.py .......... [ 32%] 160s calculator/vasp/test_vasp_input.py ........................ [ 32%] 160s calculator/vasp/test_vasp_kpoints.py ....ss... [ 33%] 160s calculator/vasp/test_vasp_potcar.py ss [ 33%] 160s calculator/vasp/test_vasp_setup.py sssssss [ 33%] 160s calculator/vasp/test_vasp_wdir.py s [ 33%] 160s calculator/vasp/test_vasp_xml.py s [ 33%] 160s calculator/vasp/test_version.py . [ 33%] 160s cell/test_cell.py ........... [ 33%] 160s cell/test_cell_completion.py . [ 33%] 160s cell/test_cell_conv.py . [ 33%] 160s cell/test_cell_uncompletion.py .. [ 33%] 160s cell/test_conventional_map.py ....................... [ 34%] 160s cell/test_minkowski_reduce.py ....................... [ 35%] 160s cell/test_niggli.py .................... [ 35%] 160s cell/test_niggli_ndim.py ............................ [ 36%] 160s cell/test_niggli_op.py . [ 36%] 160s cell/test_standard_form.py . [ 36%] 160s cell/test_supercell.py .... [ 36%] 160s cli/test_ag.py . [ 36%] 161s cli/test_bandstructure.py . [ 36%] 163s cli/test_bzplot.py ... [ 36%] 163s cli/test_complete.py . [ 36%] 163s cli/test_convert.py . [ 36%] 165s cli/test_diff.py ......... [ 36%] 166s cli/test_dimensionality.py .... [ 37%] 168s cli/test_exec.py ..... [ 37%] 168s cli/test_imports.py . [ 37%] 170s cli/test_info.py ..... [ 37%] 170s cli/test_run.py . [ 37%] 170s constraints/test_CO2linear_Au111.py .. [ 37%] 170s constraints/test_external_force.py . [ 37%] 170s constraints/test_fix_bond_length_mic.py .. [ 37%] 173s constraints/test_fix_symmetry.py ........... [ 37%] 173s constraints/test_fixatoms.py . [ 37%] 175s constraints/test_fixbondlength_CO2_Au111.py .. [ 37%] 175s constraints/test_fixbonds.py . [ 37%] 175s constraints/test_fixcartesian.py .. [ 38%] 175s constraints/test_fixcom.py ... [ 38%] 175s constraints/test_fixedline_fixedplane.py ............................... [ 38%] 175s ............. [ 39%] 175s constraints/test_fixedmode.py . [ 39%] 176s constraints/test_fixinternals.py ....... [ 39%] 176s constraints/test_fixscaled.py .. [ 39%] 176s constraints/test_fixsubsetcom.py ... [ 39%] 176s constraints/test_getindices.py . [ 39%] 176s constraints/test_hookean.py . [ 39%] 176s constraints/test_hookean_pbc.py . [ 39%] 176s constraints/test_mirror.py . [ 39%] 176s constraints/test_negativeindex.py . [ 39%] 176s constraints/test_parameteric_constr.py . [ 39%] 176s constraints/test_repeat_FixAtoms.py . [ 39%] 176s constraints/test_setpos.py . [ 39%] 178s db/test_cli.py ...... [ 40%] 184s db/test_db.py .. [ 40%] 184s db/test_db2.py ... [ 40%] 184s db/test_db_web.py ssss. [ 40%] 184s db/test_jsondb.py . [ 40%] 184s db/test_metadata.py .. [ 40%] 184s db/test_o2b2o.py . [ 40%] 184s db/test_row.py . [ 40%] 185s db/test_sql_db_ext_tables.py ...... [ 40%] 185s db/test_sqlite.py .... [ 40%] 185s db/test_table.py . [ 40%] 185s db/test_update.py .. [ 40%] 185s dft/test_bandgap.py . [ 40%] 185s dft/test_bee.py ... [ 40%] 185s dft/test_bz.py . [ 41%] 185s dft/test_dos.py . [ 41%] 185s dft/test_hex.py . [ 41%] 185s dft/test_interpolate.py . [ 41%] 185s dft/test_kpt_density_monkhorst_pack.py . [ 41%] 185s dft/test_kpts_size_offsets.py ........ [ 41%] 186s dft/test_min_distance_monkhorst_pack.py ... [ 41%] 186s dft/test_monoclinic.py . [ 41%] 186s emt/test_emt.py . [ 41%] 186s emt/test_emt1.py . [ 41%] 186s emt/test_emt2.py . [ 41%] 186s emt/test_emt_h3o2m.py . [ 41%] 186s emt/test_emt_stress.py . [ 41%] 186s filter/test_cellfilter.py sssssssssssssssssss [ 42%] 186s filter/test_filter.py ................. [ 42%] 186s filter/test_strain.py ss [ 42%] 186s filter/test_strain_emt.py . [ 42%] 186s fio/aims/test_aims_out.py ......... [ 42%] 187s fio/aims/test_aims_out_chunks.py ....................................... [ 43%] 187s ............................................................... [ 45%] 187s fio/aims/test_geometry.py ........... [ 46%] 187s fio/aims/test_write_control.py ...x.......x [ 46%] 187s fio/castep/test_castep_reader.py ................ [ 46%] 187s fio/castep/test_cell.py ........... [ 47%] 187s fio/castep/test_geom_md_ts.py .. [ 47%] 187s fio/castep/test_read_bands.py . [ 47%] 187s fio/exciting/test_exciting.py ssssss [ 47%] 187s fio/octopus/test_input.py .... [ 47%] 187s fio/octopus/test_output.py ...... [ 47%] 187s fio/test_abinit.py ..... [ 47%] 187s fio/test_ace.py .. [ 47%] 187s fio/test_amber.py ... [ 47%] 187s fio/test_animate.py . [ 47%] 187s fio/test_atoms_bytes.py . [ 47%] 187s fio/test_bundletrajectory.py ...... [ 48%] 187s fio/test_cfg.py . [ 48%] 187s fio/test_cif.py ..................... [ 48%] 187s fio/test_cifblock.py ........ [ 48%] 187s fio/test_cjson.py .. [ 49%] 187s fio/test_compression.py ...................... [ 49%] 187s fio/test_cube.py .... [ 49%] 187s fio/test_dftb.py ..... [ 49%] 187s fio/test_dlp.py ... [ 49%] 187s fio/test_dmol.py . [ 50%] 187s fio/test_elk.py ... [ 50%] 187s fio/test_eon_multi_image_read.py . [ 50%] 187s fio/test_eon_readwrite.py ...... [ 50%] 187s fio/test_espresso.py .................. [ 50%] 187s fio/test_espresso_ph.py ..... [ 50%] 187s fio/test_external_io_formats.py .... [ 51%] 188s fio/test_extxyz.py ..................................... [ 52%] 188s fio/test_fileobj.py . [ 52%] 188s fio/test_formats.py ... [ 52%] 188s fio/test_gaussian.py .......... [ 52%] 188s fio/test_gaussian_gjf_input.py ........... [ 52%] 188s fio/test_gaussian_out.py .......... [ 53%] 188s fio/test_gen.py ......................... [ 53%] 188s fio/test_gpaw.py . [ 53%] 188s fio/test_gpumd.py .......... [ 54%] 188s fio/test_info.py . [ 54%] 188s fio/test_ioformats.py .sssssssssssssssssssssssssssssssssssssssssssssssss [ 55%] 188s ssssssssssssssssssssssssssssssssssssssssssssssssss [ 56%] 188s fio/test_iread_path.py . [ 56%] 188s fio/test_json_arrays.py . [ 56%] 188s fio/test_jsonio.py .. [ 56%] 188s fio/test_jsonio_atoms.py ... [ 57%] 188s fio/test_lammpsdump.py .................... [ 57%] 188s fio/test_magmom.py . [ 57%] 188s fio/test_magres.py .... [ 57%] 188s fio/test_match_magic.py . [ 57%] 188s fio/test_mustem.py .. [ 57%] 188s fio/test_netcdftrajectory.py .... [ 57%] 188s fio/test_nomad.py . [ 57%] 188s fio/test_nwchem.py ..... [ 58%] 188s fio/test_oi.py ......................................................... [ 59%] 189s .......................... [ 60%] 189s fio/test_oldtraj.py . [ 60%] 189s fio/test_onetep.py .... [ 60%] 189s fio/test_openmx.py .. [ 60%] 189s fio/test_opls.py . [ 60%] 189s fio/test_orca.py ...... [ 60%] 189s fio/test_parallel.py . [ 60%] 189s fio/test_pdb_cell_io.py .... [ 60%] 189s fio/test_pdb_extra.py .. [ 60%] 189s fio/test_pickle_bundle_trajectory.py ..x.x.. [ 61%] 189s fio/test_plotting_variables.py ..... [ 61%] 189s fio/test_povray.py ss.ss [ 61%] 189s fio/test_prismatic.py .. [ 61%] 189s fio/test_proteindatabank.py .......... [ 61%] 189s fio/test_py.py . [ 61%] 189s fio/test_pycodcif_read.py . [ 61%] 189s fio/test_qbox.py .. [ 61%] 189s fio/test_readwrite_errors.py ........ [ 62%] 189s fio/test_res.py . [ 62%] 189s fio/test_rmc6f.py ............ [ 62%] 189s fio/test_sdf.py .. [ 62%] 189s fio/test_siesta.py ... [ 62%] 189s fio/test_traj_bytesio.py . [ 62%] 189s fio/test_trajectory.py .... [ 62%] 189s fio/test_trajectory_heterogeneous.py . [ 62%] 189s fio/test_turbomole.py . [ 62%] 189s fio/test_ulm.py .... [ 62%] 189s fio/test_ulm_dummy.py . [ 62%] 189s fio/test_v_sim.py . [ 62%] 189s fio/test_vasp_structure.py ............ [ 63%] 189s fio/test_wout.py .. [ 63%] 189s fio/test_xsd_bond.py . [ 63%] 190s fio/test_xsf_spec.py . [ 63%] 190s fio/test_xyz.py ...... [ 63%] 190s fio/vasp/test_incar_writer.py ............. [ 63%] 190s fio/vasp/test_poscar.py . [ 63%] 190s fio/vasp/test_read_vasp_xml.py ........ [ 64%] 190s fio/vasp/test_vasp_out.py ....... [ 64%] 190s fio/vasp/test_vasp_outcar_parsers.py ............................ [ 65%] 190s fio/vasp/test_vasp_poscar.py ............ [ 65%] 190s forcefields/test_acn.py . [ 65%] 190s forcefields/test_aic.py . [ 65%] 190s forcefields/test_combine_mm.py . [ 65%] 192s forcefields/test_combine_mm2.py . [ 65%] 193s forcefields/test_counterions.py . [ 65%] 194s forcefields/test_forceqmmm.py .............. [ 65%] 194s forcefields/test_qmmm.py . [ 65%] 194s forcefields/test_qmmm_acn.py . [ 66%] 196s forcefields/test_rattle.py . [ 66%] 196s forcefields/test_rattle_linear.py . [ 66%] 196s forcefields/test_tip4p.py . [ 66%] 196s forcefields/test_tipnp.py . [ 66%] 196s forcefields/test_utils_ff_vdw.py . [ 66%] 196s ga/test_add_candidates.py . [ 66%] 197s ga/test_basic_example_main_run.py . [ 66%] 199s ga/test_bulk_operators.py . [ 66%] 199s ga/test_chain_operators.py . [ 66%] 199s ga/test_create_database.py . [ 66%] 199s ga/test_cutandsplicepairing.py . [ 66%] 199s ga/test_database_logic.py . [ 66%] 199s ga/test_element_operators.py . [ 66%] 200s ga/test_film_operators.py . [ 66%] 200s ga/test_mutations.py . [ 66%] 200s ga/test_particle_comparators.py . [ 66%] 200s ga/test_particle_mutations.py . [ 66%] 200s ga/test_particle_operators.py . [ 66%] 200s ga/test_slab_operators.py ..... [ 66%] 200s ga/test_standardcomparator.py . [ 66%] 200s geometry/test_analysis.py ... [ 66%] 200s geometry/test_dimensionality.py ......... [ 67%] 200s geometry/test_distance.py . [ 67%] 200s geometry/test_geometry.py . [ 67%] 200s geometry/test_geometry_derivatives.py .... [ 67%] 200s geometry/test_geometry_rdf.py .... [ 67%] 201s gui/test_run.py sssssssssssssssssssssssssssssssssssssssssssssss [ 68%] 201s lammpsdata/test_lammpsdata_read.py . [ 68%] 201s lammpsdata/test_lammpsdata_write.py . [ 68%] 201s lammpsdata/test_read_connectivity.py ...... [ 68%] 201s lammpsdata/test_write_and_read.py .............................. [ 69%] 201s md/test_CO2linear_Au111_langevin.py . [ 69%] 202s md/test_bussi.py .... [ 69%] 203s md/test_ce_curvature.py .. [ 69%] 203s md/test_ce_logging.py . [ 69%] 203s md/test_ce_potentiostat.py .. [ 69%] 203s md/test_fixrotation.py s [ 69%] 203s md/test_idealgas.py . [ 69%] 203s md/test_langevin_asapcompat.py . [ 70%] 203s md/test_langevin_com.py . [ 70%] 205s md/test_langevin_switching.py . [ 70%] 206s md/test_maxwellboltzmann.py .. [ 70%] 206s md/test_md.py .. [ 70%] 206s md/test_md_logger.py .... [ 70%] 207s md/test_md_logger_interval.py ...... [ 70%] 207s md/test_md_stepwise.py . [ 70%] 209s md/test_nose_hoover_chain.py ........ssssssssssssssssss [ 71%] 209s md/test_nvt_npt.py ssssssss [ 71%] 209s md/test_phonon_md_init.py s [ 71%] 209s md/test_rng.py .. [ 71%] 209s md/test_velocity_distribution.py ... [ 71%] 209s md/test_verlet_thermostats_asap.py s [ 71%] 209s neb/test_COCu111.py . [ 71%] 209s neb/test_COCu111_2.py . [ 71%] 209s neb/test_autoneb.py s. [ 71%] 215s neb/test_dynamic_neb.py . [ 71%] 215s neb/test_idpp.py . [ 71%] 215s neb/test_interpolate_images.py ..... [ 71%] 216s neb/test_neb_tr.py . [ 71%] 221s neb/test_precon_neb.py ............ [ 72%] 221s neb/test_shared_calculator_neb.py ....... [ 72%] 222s neighbor/test_neighbor.py ................................ [ 73%] 222s neighbor/test_neighbor_initialization.py . [ 73%] 223s neighbor/test_neighbor_kernel.py . [ 73%] 223s optimize/test_bad_restart.py . [ 73%] 224s optimize/test_cellawarebfgs.py ....... [ 73%] 224s optimize/test_climb_fix_internals.py ... [ 73%] 225s optimize/test_fire.py . [ 73%] 225s optimize/test_fire2.py . [ 73%] 225s optimize/test_maxstep.py . [ 73%] 225s optimize/test_minimahop.py s [ 73%] 225s optimize/test_nsteps.py ... [ 73%] 225s optimize/test_optimize_stepwise.py .. [ 73%] 226s optimize/test_optimizer_restart.py ..x [ 74%] 227s optimize/test_optimizers.py ............................................ [ 75%] 228s ............ [ 75%] 228s optimize/test_pure.py . [ 75%] 228s optimize/test_replay.py . [ 75%] 228s precon/test_amin.py . [ 75%] 236s precon/test_ff_and_precon_c60.py . [ 75%] 237s precon/test_lbfgs.py . [ 75%] 237s precon/test_precon_assembly.py .................................... [ 76%] 237s precon/test_smallcell.py .. [ 76%] 238s precon/test_unitcellfilter.py .. [ 76%] 240s spacegroup/test_minerals.py ................................ [ 77%] 241s spacegroup/test_space_group_data.py ......... [ 77%] 241s spacegroup/test_spacegroup.py .... [ 78%] 241s spacegroup/test_spacegroup_crystal.py .. [ 78%] 241s spacegroup/test_spacegroup_utils.py .................................... [ 79%] 241s ................ [ 79%] 241s spectrum/test_doscollection.py ......................................... [ 80%] 241s .. [ 80%] 241s spectrum/test_dosdata.py ............................................... [ 82%] 241s ..... [ 82%] 241s standardization/test_properties.py . [ 82%] 241s test_bader.py . [ 82%] 241s test_bandpath_kpts_axis.py . [ 82%] 242s test_basin.py . [ 82%] 242s test_calc_outputs_big.py ... [ 82%] 242s test_calc_properties.py .......................................... [ 83%] 242s test_calculator_equal.py ............................................... [ 84%] 242s ........................................................................ [ 86%] 242s ........................................................................ [ 88%] 242s ............................................. [ 90%] 242s test_calculator_label.py . [ 90%] 242s test_checkpoint.py .. [ 90%] 243s test_cluster.py ........................ [ 90%] 243s test_cutoffs.py . [ 90%] 243s test_dependency_list.py .. [ 90%] 243s test_diffusion_coefficient.py .. [ 90%] 243s test_dimer.py . [ 91%] 243s test_dimer_method.py . [ 91%] 243s test_distmom.py . [ 91%] 243s test_doctests.py ................ [ 91%] 244s test_dos.py . [ 91%] 244s test_eos.py . [ 91%] 244s test_example.py . [ 91%] 245s test_external_viewer.py ..ss.......... [ 91%] 245s test_filecache.py ................. [ 92%] 245s test_forcecurve.py . [ 92%] 245s test_formula.py .................. [ 92%] 245s test_grid_slice.py . [ 92%] 245s test_gromacs.py .. [ 93%] 245s test_hcp.py . [ 93%] 245s test_imports.py . [ 93%] 245s test_isotopes.py . [ 93%] 245s test_issue276.py . [ 93%] 245s test_kpts.py . [ 93%] 245s test_kpts2kpts.py ............................. [ 93%] 245s test_lattice_lindep.py ........ [ 94%] 245s test_linesearch_maxstep.py .... [ 94%] 246s test_lock.py .. [ 94%] 246s test_loggingcalc.py . [ 94%] 246s test_makebandpath.py . [ 94%] 246s test_matplotlib_plot.py ..... [ 94%] 246s test_minimum_image_convention.py ... [ 94%] 246s test_mixingcalc.py . [ 94%] 246s test_mpi.py .s [ 94%] 246s test_noncollinear.py . [ 94%] 246s test_nwchem_writer.py ... [ 94%] 246s test_parsemath.py . [ 94%] 246s test_pathlib_support.py . [ 94%] 246s test_phasediagram.py ... [ 94%] 247s test_phonons.py ....... [ 95%] 247s test_potential_energies.py . [ 95%] 247s test_pourbaix.py ...... [ 95%] 247s test_properties.py . [ 95%] 247s test_ptable.py . [ 95%] 247s test_pubchem.py ...... [ 95%] 247s test_quaternions.py ......... [ 95%] 247s test_root_surf.py . [ 95%] 247s test_s22.py . [ 95%] 247s test_singlepoint_dft_calc.py . [ 95%] 247s test_singlepointcalc.py . [ 95%] 247s test_springcalc.py . [ 95%] 247s test_stm.py . [ 96%] 247s test_stress.py .. [ 96%] 249s test_structure_comparator.py .................... [ 96%] 249s test_symbols.py ........... [ 96%] 249s test_thermochemistry.py .........s..... [ 97%] 249s test_things.py . [ 97%] 249s test_timing.py . [ 97%] 249s test_units.py .. [ 97%] 249s test_util.py ......................... [ 98%] 249s test_versionnumber.py . [ 98%] 249s test_x3d.py s [ 98%] 249s test_xrdebye.py ... [ 98%] 249s test_xwopen.py ... [ 98%] 249s test_zmatrix.py .... [ 98%] 250s transport/test_transport_calculator.py . [ 98%] 250s vibrations/test_albrecht.py .... [ 98%] 250s vibrations/test_bond_polarizability_raman.py ... [ 98%] 250s vibrations/test_combine.py . [ 98%] 250s vibrations/test_folding.py . [ 98%] 250s vibrations/test_franck_condon.py ... [ 98%] 250s vibrations/test_pickle2json.py . [ 98%] 251s vibrations/test_placzek.py .... [ 98%] 251s vibrations/test_profeta_albrecht.py . [ 99%] 251s vibrations/test_vib.py ................................... [ 99%] 251s vibrations/test_vibrations_example.py . [100%] 251s 251s =============================== warnings summary =============================== 251s :488 251s :488: RuntimeWarning: numpy.ndarray size changed, may indicate binary incompatibility. Expected 16 from C header, got 96 from PyObject 251s 251s calculator/turbomole/test_turbomole_optimizer.py::test_turbomole_optimizer 251s /usr/lib/python3.13/pathlib/_local.py:289: ResourceWarning: unclosed file <_io.FileIO name='/dev/null' mode='wb' closefd=True> 251s @property 251s Enable tracemalloc to get traceback where the object was allocated. 251s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 251s 251s dft/test_bz.py::test_repeat_transpose_bz 251s /usr/lib/python3/dist-packages/matplotlib/colors.py:247: ResourceWarning: unclosed database in 251s for k, v in kwargs.items(): 251s Enable tracemalloc to get traceback where the object was allocated. 251s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 251s 251s dft/test_bz.py::test_repeat_transpose_bz 251s /usr/lib/python3/dist-packages/matplotlib/colors.py:247: ResourceWarning: unclosed database in 251s for k, v in kwargs.items(): 251s Enable tracemalloc to get traceback where the object was allocated. 251s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 251s 251s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 251s /usr/lib/python3/dist-packages/ase/db/sqlite.py:524: ResourceWarning: unclosed file <_io.FileIO name='/dev/null' mode='wb' closefd=True> 251s def _old2new(self, values): 251s Enable tracemalloc to get traceback where the object was allocated. 251s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 251s 251s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 251s /usr/lib/python3/dist-packages/ase/db/sqlite.py:524: ResourceWarning: unclosed database in 251s def _old2new(self, values): 251s Enable tracemalloc to get traceback where the object was allocated. 251s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 251s 251s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 251s /usr/lib/python3/dist-packages/ase/db/sqlite.py:524: ResourceWarning: unclosed database in 251s def _old2new(self, values): 251s Enable tracemalloc to get traceback where the object was allocated. 251s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 251s 251s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 251s /usr/lib/python3/dist-packages/ase/db/sqlite.py:524: ResourceWarning: unclosed database in 251s def _old2new(self, values): 251s Enable tracemalloc to get traceback where the object was allocated. 251s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 251s 251s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 251s /usr/lib/python3/dist-packages/ase/db/sqlite.py:524: ResourceWarning: unclosed database in 251s def _old2new(self, values): 251s Enable tracemalloc to get traceback where the object was allocated. 251s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 251s 251s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 251s /usr/lib/python3/dist-packages/ase/db/sqlite.py:524: ResourceWarning: unclosed database in 251s def _old2new(self, values): 251s Enable tracemalloc to get traceback where the object was allocated. 251s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 251s 251s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 251s /usr/lib/python3/dist-packages/ase/db/sqlite.py:524: ResourceWarning: unclosed database in 251s def _old2new(self, values): 251s Enable tracemalloc to get traceback where the object was allocated. 251s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 251s 251s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] 251s /usr/lib/python3/dist-packages/ase/db/sqlite.py:524: ResourceWarning: unclosed database in 251s def _old2new(self, values): 251s Enable tracemalloc to get traceback where the object was allocated. 251s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 251s 251s geometry/test_analysis.py::test_analysis 251s /usr/lib/python3/dist-packages/scipy/sparse/_coo.py:215: ResourceWarning: unclosed database in 251s self.coords = tuple(np.asarray(idx, dtype=idx_dtype) 251s Enable tracemalloc to get traceback where the object was allocated. 251s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 251s 251s md/test_rng.py::test_andersen[rng0] 251s /usr/lib/python3/dist-packages/ase/neighborlist.py:1020: ResourceWarning: unclosed file <_io.TextIOWrapper name='/dev/null' mode='w' encoding='utf-8'> 251s displacements2 = [[] for a in range(natoms)] 251s Enable tracemalloc to get traceback where the object was allocated. 251s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 251s 251s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 251s ==== 3056 passed, 553 skipped, 5 xfailed, 14 warnings in 104.58s (0:01:44) ===== 252s About to run pytest with these parameters: 252s -p 252s no:cacheprovider 252s ImportError while loading conftest '/usr/lib/python3/dist-packages/ase/test/conftest.py'. 252s conftest.py:15: in 252s from ase.test.factories import ( 252s factories.py:32: in 252s from ase.calculators.vasp import Vasp, get_vasp_version 252s ../calculators/vasp/__init__.py:4: in 252s from .vasp import Vasp 252s ../calculators/vasp/vasp.py:43: in 252s from ase.vibrations.data import VibrationsData 252s ../vibrations/__init__.py:1: in 252s from ase.vibrations.data import VibrationsData 252s ../vibrations/data.py:18: in 252s from ase.spectrum.doscollection import DOSCollection 252s ../spectrum/doscollection.py:18: in 252s from matplotlib.axes import Axes 252s ../../matplotlib/__init__.py:161: in 252s from . import _api, _version, cbook, _docstring, rcsetup 252s ../../matplotlib/rcsetup.py:29: in 252s from matplotlib._fontconfig_pattern import parse_fontconfig_pattern 252s ../../matplotlib/_fontconfig_pattern.py:15: in 252s from pyparsing import ( 252s ../../pyparsing/__init__.py:132: in 252s from .core import __diag__, __compat__ 252s E File "/usr/lib/python3/dist-packages/pyparsing/core.py", line 5637 252s E return f"{type(self).__name__}: {retString}" 252s E ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 252s E SyntaxError: 'return' in a 'finally' block 253s autopkgtest [10:39:52]: test command1: -----------------------] 253s command1 FAIL non-zero exit status 4 253s autopkgtest [10:39:52]: test command1: - - - - - - - - - - results - - - - - - - - - - 253s autopkgtest [10:39:52]: @@@@@@@@@@@@@@@@@@@@ summary 253s command1 FAIL non-zero exit status 4